Citrus Sinensis ID: 009119

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---
Protein Sequence
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVSV
Secondary Structure (PSIPRED)
cHHHHHHcccccEEEccccccccccHHHHHccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHcccccccccccccccccccHHHHccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccEEEccccccccccHHccccccccEEEccccccccccccccccccccHHcccccccccccccccccccHHHHHHHHHcccccccEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccHHHHHccccccEEEccccccccccHHHHccccccEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccEEEccccccccccHHHHcccccccccHHHHccccccEEEccccccccccHHHcccccccEEEccccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEEccccccccccHHHHccccccEEEccccccccccHHHccccccEEEEccccccccccHHHcccccccEEEccccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHccccccccEEEcccccccccccHHcccccHHHHHHHHHHccccccccccccccccccHHHccccccEEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHcccccccEEEccccccccccccccccccccEEEcccccccccccHHccc
Coil and Loop (DISEMBL)
MDRILKAARtsgslnlsnrslrdvpnevyknfdeagegdkwwEAVDLQKLILAHNNIEKLKEDlrnlplltVLNVSHNKLSELPAAIGELHMlksldvsfnsimkipdeigSATALVkfdcssnqlkelpsslgrclnlsdfkasnncitslpedladcskmskldvegnkltVLSNNLIASWTMLTELIASKnllngmpetIGSLSRLIRLDLhqnrilsipssisgcCSLAefymgnnalsALPAElgklsklgtldlhSNQLKEYCVEACQLRLSVLDlsnnslsglppeigkMTTLRKLLLtgnplrtlrsslvngptpALLKYLRSrlpenedseasttkEDLITMATRLSVTSKELslegmnlsaipseiweageitkldlsrnsiqelppelsscASLQTLILSRnkikdwpdAILTSLsslsclkldnnplrqvpsdgfkdipmlqiLDLSyniaslpenppfsslphLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKnltslteldlsdnnisalppelvsv
Flexible Loop (DISEMBL)
mdrilkaartsgslnlsnrslrdvpnEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRtlrsslvngptPALLKYLRsrlpenedseasttkedlitMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLteldlsdnnisalppelvsv
Low Complexity Region (SEG)
MDRILKAARTSGslnlsnrslrDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQlrlsvldlsnnslsglPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIltslsslsclklDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTdilrlqqlrildlSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVSV
Disordered region (IsUnstruct)
***************************VYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL*************************************MNLSAIPSEIWEAGEITKLDL***********LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN*PFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ************************************
Disordered Region (DISOPRED)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVSV
Disordered Region (DISEMBL)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL**********TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVSV
Disordered Region (DISPRO)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDxxxxxxxxxxxxxxxxxxxxxPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	543	2.2.26 [Sep-21-2011]
Q5ZLN0	603	Leucine-rich repeat-conta	yes	no	0.931	0.839	0.335	7e-64
Q6GPJ5	605	Leucine-rich repeat-conta	N/A	no	0.961	0.862	0.335	7e-62
Q5M8G4	605	Leucine-rich repeat-conta	yes	no	0.961	0.862	0.344	3e-61
Q5RFE9	602	Leucine-rich repeat-conta	yes	no	0.935	0.843	0.335	2e-59
Q9H9A6	602	Leucine-rich repeat-conta	yes	no	0.935	0.843	0.333	7e-59
Q4R3P6	602	Leucine-rich repeat-conta	N/A	no	0.935	0.843	0.333	3e-58
Q7SXW3	601	Leucine-rich repeat-conta	yes	no	0.937	0.846	0.323	8e-58
Q9CRC8	602	Leucine-rich repeat-conta	yes	no	0.933	0.842	0.327	1e-53
Q8AVI4	577	Leucine-rich repeat prote	N/A	no	0.696	0.655	0.300	5e-36
Q5F4C4	529	Leucine-rich repeat prote	no	no	0.618	0.635	0.308	5e-35

>sp|Q5ZLN0|LRC40_CHICK Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1

 Score =  245 bits (625), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 189/563 (33%), Positives = 298/563 (52%), Gaps = 57/563 (10%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +++AAR SG LNL+ R L +VP  V++ N D   EA      G  D+WWE  DL KLILA
Sbjct: 31  LIRAARKSGQLNLAGRGLGEVPQHVWRINLDTPEEAHQNLSFGAADRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N +  L ED+R LP LTVL+V  N+L+ LP+A+G+L  L+ LDVS N +  IP+E+   
Sbjct: 91  SNQLRCLSEDVRLLPALTVLDVHDNQLTSLPSALGQLENLQKLDVSHNKLKSIPEELLQL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           + L       N+L  LP   G+ ++L +   SNN +T +P+  A    + +L++  N+L 
Sbjct: 151 SHLKGLLLQHNELSHLPDGFGQLVSLEELDLSNNHLTDIPKSFALLINLVRLNLACNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L  + I++   L +L  +KN L  +P  + S++ L +L L +N++ S+P  +  C  L 
Sbjct: 211 DLPAD-ISAMKSLRQLDCTKNYLESVPSELASMASLEQLYLRKNKLRSLP-ELPSCKLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLP 291
           E + G N +  L AE L  L+ L  L+L  N++K    E   L +L  LDL+NN +S LP
Sbjct: 269 ELHAGENQIEILNAENLKHLNSLSVLELRDNKIKSVPDEITLLQKLERLDLANNDISRLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G ++ L+ L L GNPLRT+R  L+   T  LLKYLRSR+   +D +AS  +E  +T 
Sbjct: 329 YTLGNLSQLKFLALEGNPLRTIRRDLLQKGTQELLKYLRSRI---QDDKASPNEEPPVTA 385

Query: 352 AT-----RLSV----TSKELSLEGMNLSAIPSEIWEA---GEITKLDLSRNSIQELPPEL 399
            T     R+++    T K L      ++ IP +++ A     +T ++ S+N +  +PP +
Sbjct: 386 MTLPSESRINMHAITTLKLLDYSEKQVAVIPDDVFSAVRSNPVTSVNFSKNQLTAIPPRI 445

Query: 400 SSCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
                S+  +    NKI       L +L  L+ L + NN L  +P +  + +  LQ+++L
Sbjct: 446 VELKDSVCDVNFGFNKISSV-SLELCTLHKLTHLDIRNNVLTSLPEE-MEALTRLQVINL 503

Query: 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGF 517
           S+N                        + +  P+ + R+  L  + LS N + SI P   
Sbjct: 504 SFN------------------------RFKVFPSVLYRMLALETILLSNNQVGSIDPLQL 539

Query: 518 KNLTSLTELDLSDNNISALPPEL 540
           K +  L  LDL +N++  +PPEL
Sbjct: 540 KKMEQLGTLDLQNNDLLQVPPEL 562

Gallus gallus (taxid: 9031)

>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1

 Score =  238 bits (608), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 281/554 (50%), Gaps = 32/554 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L +VP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTEVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N+++ LP AI EL  L+ L++S N I ++P+E+   
Sbjct: 91  SNKLQALSEDISLLPALVVLDIHDNQIASLPCAIRELTNLQKLNISHNKIKQLPNELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L  F    NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSFLLQHNQLEELPDSIGHLSILEELDVSNNCLRSVSSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLRQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L+ L  LDLSNN +  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPKEISLLKGLERLDLSNNDIGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL--PENEDSEASTTKEDLI 349
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R+  P+    EA+   +  +
Sbjct: 329 DTLGSLPNLKSLQLDGNPLRGIRRDILNKGTQELLKYLKGRVQTPDMTTQEAANPPDTAM 388

Query: 350 TMAT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELS 400
           T+ +         +T K L       S IP  ++ A     IT ++ S+N + E+P  + 
Sbjct: 389 TLPSDSVINAHAIMTLKTLEYCEKQASLIPEAVFNAAASSPITTVNFSKNQLTEVPARIV 448

Query: 401 SCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
               S+  + L  NKI       L  L  L+ L + NN L  +P +  + +  LQ + LS
Sbjct: 449 EMKDSVYDVNLGFNKISSI-SLNLCMLLKLTHLDMRNNALASLPPE-MEALTRLQSIILS 506

Query: 460 YN-IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGF 517
           +N     P+     ++P+L+ + +   Q+    P  + ++ +L  LDL  N L  IP   
Sbjct: 507 FNRFKHFPD--VLYTIPNLETILISSNQIGSIDPIQLKKMTKLSTLDLQNNDLLQIPPAL 564

Query: 518 KNLTSLTELDLSDN 531
            N  SL  L L  N
Sbjct: 565 GNCESLRALHLEGN 578

Xenopus laevis (taxid: 8355)

>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1

 Score =  236 bits (603), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 191/554 (34%), Positives = 278/554 (50%), Gaps = 32/554 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L DVP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTDVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N++  LP AI EL  L+ L++S N I ++P E+   
Sbjct: 91  SNKLQLLSEDISLLPALVVLDIHDNQIVSLPCAIKELTNLQKLNISHNKIKQLPKELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSLLLQHNQLEELPDSIGHLSILEELDVSNNCLRSISSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLKQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L  L  LDLSNN L  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPEEISLLNGLERLDLSNNDLGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL-------PENEDSEAST- 343
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R+        E+E+S A+  
Sbjct: 329 CTLGSLPNLKSLQLEGNPLRGIRRDILNKGTQELLKYLKGRVQVPDVKTQEDENSTATAM 388

Query: 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA---GEITKLDLSRNSIQELPPELS 400
           T      + T   VT K L       S IP  ++ A     IT ++ S+N + E+P  + 
Sbjct: 389 TLPSESVVNTHAIVTLKTLEYCEKQASLIPEAVFNATGSSFITTVNFSKNQLTEVPARIV 448

Query: 401 SCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
               S+  + L  NKI       L  L  L+ + + NN L  +PS+  + +  LQ + LS
Sbjct: 449 EMKDSVCDVNLGFNKISSI-SLNLCMLLKLTHIDMRNNVLTSLPSE-MEAMTRLQSVILS 506

Query: 460 YN-IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGF 517
           +N     P+      +P L+ + +   Q+    PT ++++ +L  LDL  N L  IP   
Sbjct: 507 FNRFKHFPD--VLYRIPTLETILISSNQIGSIDPTQLIKMTKLSTLDLQNNDLLQIPPAL 564

Query: 518 KNLTSLTELDLSDN 531
            N  SL  L L  N
Sbjct: 565 GNCESLRALHLEGN 578

Xenopus tropicalis (taxid: 8364)

>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat-containing protein 40 OS=Pongo abelii GN=LRRC40 PE=2 SV=1

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 295/560 (52%), Gaps = 52/560 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELQNLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQFSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 AT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +      R  +T K L       + IP E+++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIRAIITLKILDYSDKQATLIPDEVFDAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVNLSFNKL-SFISLELCVLQKLTFLDLRNNFLNSLPEE-VESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNL 520
                    F  LP +  LY              R+  L  + +S N + S+ P+  K +
Sbjct: 506 --------RFKMLPEV--LY--------------RIFTLETILISNNQVGSVDPQKMKMM 541

Query: 521 TSLTELDLSDNNISALPPEL 540
            +LT LDL +N++  +PPEL
Sbjct: 542 ENLTTLDLQNNDLLQIPPEL 561

Pongo abelii (taxid: 9601)

>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1

 Score =  228 bits (582), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 294/560 (52%), Gaps = 52/560 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   LR L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  +++  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E+++A +   +T ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVDLSFNKL-SFISLELCVLQKLTFLDLRNNFLNSLPEE-MESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNL 520
                    F  LP +  LY              R+  L  + +S N + S+ P+  K +
Sbjct: 506 --------RFKMLPEV--LY--------------RIFTLETILISNNQVGSVDPQKMKMM 541

Query: 521 TSLTELDLSDNNISALPPEL 540
            +LT LDL +N++  +PPEL
Sbjct: 542 ENLTTLDLQNNDLLQIPPEL 561

Homo sapiens (taxid: 9606)

>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis GN=LRRC40 PE=2 SV=1

 Score =  226 bits (576), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 292/560 (52%), Gaps = 52/560 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+A+ EL  L+ L+VS N +   P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAMRELENLQKLNVSHNKLKIFPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESAAETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E++ A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFNAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVNLSFNKL-SFISLELCMLQKLTFLDLRNNFLNSLPEE-MESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNL 520
                    F  LP +  LY              R+  L  + +S N + S+ P+  K +
Sbjct: 506 --------RFKMLPEV--LY--------------RIFTLETILISNNQVGSVDPQKMKMM 541

Query: 521 TSLTELDLSDNNISALPPEL 540
            +LT LDL +N++  +PPEL
Sbjct: 542 ENLTTLDLQNNDLLQIPPEL 561

Macaca fascicularis (taxid: 9541)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score =  225 bits (573), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 181/560 (32%), Positives = 285/560 (50%), Gaps = 51/560 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R L +VP  V++ N D   EA      G  D+WWE  DL KL+L+
Sbjct: 29  LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct: 89  SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct: 149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct: 209 SLP-PAISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLP-ELPCCKTLK 266

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E + GNN +  L AE L  L+ L  L+L  N++K    E   L+ L  LDL+NN +S LP
Sbjct: 267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct: 327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P      
Sbjct: 387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVP------ 440

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
                     ++I D  D       SL+ + L  N L  +P+D F  +  L  +DL  N 
Sbjct: 441 ----------HRIVDLKD-------SLADINLGFNKLTTIPAD-FCHLKQLMHIDLRNNL 482

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNL 520
           + SLP       L  L+ + L   + +  P  + R+  L  + +S N +  I     K L
Sbjct: 483 LISLPME--LEGLIKLRSVILSFNRFKSFPEVLYRIPSLETILISSNQVGGIDAVQMKTL 540

Query: 521 TSLTELDLSDNNISALPPEL 540
           + L+ LDLS+N+I  +PPEL
Sbjct: 541 SRLSTLDLSNNDIMQVPPEL 560

Danio rerio (taxid: 7955)

>sp|Q9CRC8|LRC40_MOUSE Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40 PE=2 SV=2

 Score =  211 bits (536), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 184/561 (32%), Positives = 288/561 (51%), Gaps = 54/561 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
           +LKAAR+SG LNL+ R+L +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct: 31  LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct: 91  SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct: 151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P     C  L 
Sbjct: 211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLP-EFPSCRQLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++  N +  L AE L  L  +  LDL  N+L+    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct: 329 CSLGNL-HLKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP ++++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             +   I LS NK        L+ +S   CL                 +  L  LDL  N
Sbjct: 448 KEMVLDINLSFNK--------LSFISHELCL-----------------LQKLTFLDLRNN 482

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKN 519
            ++SLPE    SSL  LQ + L   + +  P  + R+  L  + +S N + S+ P+  K 
Sbjct: 483 FLSSLPEE--MSSLTKLQTINLSFNRFKVFPEVLYRISTLEAVLISNNQVGSVDPQKMKL 540

Query: 520 LTSLTELDLSDNNISALPPEL 540
           + +L  LDL +N++  +PPEL
Sbjct: 541 MENLNTLDLQNNDLLQIPPEL 561

Mus musculus (taxid: 10090)

>sp|Q8AVI4|SHOC2_XENLA Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1

 Score =  152 bits (385), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 210/436 (48%), Gaps = 58/436 (13%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P  VY+                L  L L  N I  +++DL+ LP LT+L
Sbjct: 169 LDLRHNKLREIPPVVYR-------------LSSLTTLFLRFNRITAVEKDLKMLPKLTML 215

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+  LPA IGEL  L +LDV+ N +  +P EIG+ T +   D   N+L +LP ++
Sbjct: 216 SIRENKIKHLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTI 275

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +LS      N ++++P  L+ CS++ +L++E N ++ L   L++S   +  L  ++
Sbjct: 276 GNLSSLSRLGLRYNRLSAVPRSLSKCSELDELNLENNNISTLPEGLLSSLVKVNSLTLAR 335

Query: 194 NLLNGMPETIGS---LSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 336 NCFQSYP--VGGPSQFSSIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 393

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   +   L  + VL LSNN L  LP  IG +  LR+L L  N
Sbjct: 394 GTWTSMVELNLATNQLTKIPEDVSGLVSIEVLILSNNLLKKLPHGIGNLRKLRELDLEEN 453

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L         P  + YL+                DL           ++L L    
Sbjct: 454 KLESL---------PNEIAYLK----------------DL-----------QKLVLTNNQ 477

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLS 427
           L+ +P  I     +T L L  N +  LP E+ +  +L+ L L+ N  +   P   L   S
Sbjct: 478 LTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFE-LALCS 536

Query: 428 SLSCLKLDNNPLRQVP 443
            LS + ++N PL  +P
Sbjct: 537 KLSIMSIENCPLSHLP 552

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes.

Xenopus laevis (taxid: 8355)

>sp|Q5F4C4|SHOC2_CHICK Leucine-rich repeat protein SHOC-2 OS=Gallus gallus GN=SHOC2 PE=2 SV=1

 Score =  149 bits (377), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 192/392 (48%), Gaps = 56/392 (14%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P+ VY+                L  L L  N I  +++D++ L  LT+L
Sbjct: 174 LDLRHNKLREIPSVVYR-------------LTSLATLYLRFNRITTVEKDIKTLSKLTML 220

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+ +LPA IGEL  L +LDV+ N +  +P+EIGS T +   D   N+L +LP ++
Sbjct: 221 SIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPEEIGSCTQITNLDLQHNELLDLPETI 280

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +LS      N ++++P+ LA CS++ +L++E N ++ L   L++S   LT L  ++
Sbjct: 281 GNLSSLSRLGLRYNRLSAIPKSLAKCSELDELNLENNNISTLPEGLLSSLVKLTSLTLAR 340

Query: 194 NLLNGMPETIGS---LSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 341 NCFQSYP--VGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 398

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   +   L  L VL LSNN L  LP  IG +  LR+L L  N
Sbjct: 399 GTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEEN 458

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L         P  + YL+                DL           ++L L    
Sbjct: 459 KLESL---------PNEIAYLK----------------DL-----------QKLVLTNNQ 482

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELS 400
           L+ +P  I     +T L L  N +  LP E+ 
Sbjct: 483 LTTLPRGIGHLTNLTHLGLGENLLTHLPEEIG 514

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	543
224114980	580	predicted protein [Populus trichocarpa]	0.987	0.924	0.778	0.0
255575336	571	leucine-rich repeat-containing protein,	0.992	0.943	0.761	0.0
359493861	584	PREDICTED: leucine-rich repeat-containin	0.994	0.924	0.770	0.0
225461397	588	PREDICTED: leucine-rich repeat-containin	0.994	0.918	0.757	0.0
356549743	583	PREDICTED: leucine-rich repeat-containin	0.900	0.838	0.762	0.0
449431828	583	PREDICTED: leucine-rich repeat-containin	0.981	0.914	0.752	0.0
356544024	586	PREDICTED: leucine-rich repeat-containin	0.985	0.912	0.761	0.0
30683597	584	leucine-rich repeat-containing protein [	0.994	0.924	0.720	0.0
297830120	584	leucine-rich repeat family protein [Arab	0.994	0.924	0.720	0.0
7021726	562	unknown protein [Arabidopsis thaliana]	0.994	0.960	0.720	0.0

>gi|224114980|ref|XP_002316909.1| predicted protein [Populus trichocarpa] gi|222859974|gb|EEE97521.1| predicted protein [Populus trichocarpa]

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/541 (77%), Positives = 470/541 (86%), Gaps = 5/541 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAAR+SGSLNLSNRSL +VP+EVYK  D  GEG+KWWE V+LQKLILAHNNIE +
Sbjct: 1   MDRVLKAARSSGSLNLSNRSLSEVPDEVYKILDAVGEGEKWWENVELQKLILAHNNIEAI 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDL+NL  LTVLNVSHNKLS LPAAIGEL MLK LDVSFN I K+PDEIGSAT+LVKFD
Sbjct: 61  KEDLKNLSQLTVLNVSHNKLSALPAAIGELPMLKLLDVSFNLIQKVPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQL+ELPSSLG CL LSD KASNN ITSLPEDLA CSK++K+DVEGNKL VLS NL+
Sbjct: 121 CSSNQLRELPSSLGGCLALSDLKASNNSITSLPEDLARCSKLTKVDVEGNKLKVLSGNLM 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTE  ASKNLL+ +P+  GSLSRLIRLDLHQNRI +IP SI GCCSLAEFYMGNN
Sbjct: 181 ASWTMLTEFNASKNLLSDIPDNFGSLSRLIRLDLHQNRISTIPPSIMGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ALS LPAE+G LS+LGTLDLHSNQLKE   EAC+L+LS+LDLSNNSL+GLPPE+GKMTTL
Sbjct: 241 ALSTLPAEIGALSRLGTLDLHSNQLKEIPAEACKLQLSMLDLSNNSLTGLPPELGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLL GNPLRTLRSSLV+GPT  LL YLRSRL E EDS+A+T  K+DLI+M  RLSV+S
Sbjct: 301 RKLLLNGNPLRTLRSSLVSGPTATLLNYLRSRLSEGEDSKATTPAKKDLISMTARLSVSS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSL+G+ LSA+PSE+WE+ EI K+DLSRNSIQELP ELS C     LILSRNKI DWP
Sbjct: 361 KELSLQGLGLSAVPSEVWESNEIVKVDLSRNSIQELPLELSLCC----LILSRNKISDWP 416

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNN L Q+PSDGF+ +PMLQILDLS N ASL  +P FSSLPHL+E
Sbjct: 417 CAILKSLPNLICLKLDNNALTQIPSDGFQAVPMLQILDLSGNPASLLGHPAFSSLPHLKE 476

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYLR++QLRE P+DIL LQQL+IL+LSQNSL SIPEG KNLTSLTELDLSDNNISALPPE
Sbjct: 477 LYLRQVQLREIPSDILSLQQLQILNLSQNSLHSIPEGLKNLTSLTELDLSDNNISALPPE 536

Query: 540 L 540
           L
Sbjct: 537 L 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575336|ref|XP_002528571.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223532015|gb|EEF33826.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/541 (76%), Positives = 475/541 (87%), Gaps = 2/541 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAARTSGSLNLSNRSLR + +EVY++ D AGEG+KWWE V+LQKLILAHN+IE L
Sbjct: 1   MDRVLKAARTSGSLNLSNRSLRQL-HEVYRSSDAAGEGEKWWETVELQKLILAHNSIESL 59

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLR LP LTVLNVS+NKL+ LPAAIGEL +LKSLDVSFN I  +PDEIGSAT+LVKFD
Sbjct: 60  KEDLRLLPQLTVLNVSNNKLTALPAAIGELSLLKSLDVSFNMIQTVPDEIGSATSLVKFD 119

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQLKELP S+GRCL+LS+ K SNN ITS PEDLA C K++K+DVEGNKL   S NL+
Sbjct: 120 CSSNQLKELPGSVGRCLDLSELKVSNNLITSFPEDLAKCLKLTKVDVEGNKLQTFSENLM 179

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKNLL  +P+ +GSLSRLIRLD HQN+I SIP SI GCCSL EFYMGNN
Sbjct: 180 ASWTMLTELNASKNLLTCIPDNVGSLSRLIRLDFHQNKISSIPPSIKGCCSLLEFYMGNN 239

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS LPAE+G++S+L TLDLHSNQLKE+ VE C+L LSVLDLSNNSLSGLP EIG+MTTL
Sbjct: 240 LLSTLPAEIGEVSRLATLDLHSNQLKEFPVEGCKLHLSVLDLSNNSLSGLPLEIGRMTTL 299

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLLTGNPLRT+RSSLV+GPTPALL+YLRSRL E EDSEA+T  ++D+I MA+RLS+++
Sbjct: 300 RKLLLTGNPLRTIRSSLVSGPTPALLRYLRSRLSEGEDSEANTPPRKDVIAMASRLSIST 359

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KEL L G+ LSA+PSE+WE+GEI K+DLS+NSIQ+LP ELSSC SLQTLILS+NKI++WP
Sbjct: 360 KELFLVGLGLSAVPSEVWESGEIVKVDLSKNSIQKLPVELSSCVSLQTLILSKNKIQEWP 419

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SLS+LSCLKLDNNPLRQ+P DGF+ + MLQILDLS N AS+ E PPFS LPHLQE
Sbjct: 420 GAILKSLSNLSCLKLDNNPLRQIPLDGFQAVSMLQILDLSGNPASVCELPPFSKLPHLQE 479

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYLR +QL E P+DIL L QLRILDLS+NSLQSIPEGFK+LTSLTELDLSDN+I+ALPPE
Sbjct: 480 LYLRHVQLHEVPSDILSLLQLRILDLSRNSLQSIPEGFKSLTSLTELDLSDNSIAALPPE 539

Query: 540 L 540
           L
Sbjct: 540 L 540

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493861|ref|XP_003634682.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 2 [Vitis vinifera] gi|302143032|emb|CBI20327.3| unnamed protein product [Vitis vinifera]

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/541 (77%), Positives = 480/541 (88%), Gaps = 1/541 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT-KEDLITMATRLSVTS 359
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +EDSEA+TT KE+++TMA R+S+TS
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEDSEAATTAKENVVTMAARISITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ LILSRNKI++WP
Sbjct: 361 KELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKIQEWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
             IL SL +LSCLKLDNNPLRQ+P+DGF+ +  LQILDLS N ASLP+NP FSSLP LQE
Sbjct: 421 GVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLPQLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYLRRMQL E P+DIL LQQL+ILDLSQNSLQ IPEGFKNLTSLTEL+LSDN+I+ LPPE
Sbjct: 481 LYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPEGFKNLTSLTELNLSDNSIATLPPE 540

Query: 540 L 540
           L
Sbjct: 541 L 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461397|ref|XP_002284846.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 1 [Vitis vinifera]

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/545 (75%), Positives = 477/545 (87%), Gaps = 5/545 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED-----SEASTTKEDLITMATRL 355
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +E      + A+T KE+++TMA R+
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEGVFLFFTSATTAKENVVTMAARI 360

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
           S+TSKELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ LILSRNKI
Sbjct: 361 SITSKELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKI 420

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475
           ++WP  IL SL +LSCLKLDNNPLRQ+P+DGF+ +  LQILDLS N ASLP+NP FSSLP
Sbjct: 421 QEWPGVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLP 480

Query: 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535
            LQELYLRRMQL E P+DIL LQQL+ILDLSQNSLQ IPEGFKNLTSLTEL+LSDN+I+ 
Sbjct: 481 QLQELYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPEGFKNLTSLTELNLSDNSIAT 540

Query: 536 LPPEL 540
           LPPEL
Sbjct: 541 LPPEL 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549743|ref|XP_003543250.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/540 (76%), Positives = 475/540 (87%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL ++P+EVY+N +  G  DKWWEA +LQKLILAHN+I  L
Sbjct: 1   MDRILKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGDDKWWEAAELQKLILAHNSIASL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLRNLP L+VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+KIP+EIGSA +LVK D
Sbjct: 61  KEDLRNLPFLSVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVKIPEEIGSAVSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+L ELPSSLGRCL LSD K SNN IT+LPEDLA+CSK+SKLD+EGN+LTV+S NLI
Sbjct: 121 CSNNRLTELPSSLGRCLELSDLKGSNNLITNLPEDLANCSKLSKLDMEGNRLTVMSENLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           +SWTMLTE  +SKNLLNG+P +IG LSRLIRLDLHQNRI +IPSSI GC SL E Y+GNN
Sbjct: 181 SSWTMLTEFNSSKNLLNGIPTSIGGLSRLIRLDLHQNRISAIPSSIIGCHSLTELYLGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTTL
Sbjct: 241 NISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
           RKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++ITMATRLS++SK
Sbjct: 301 RKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVITMATRLSISSK 360

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
           ELS+E + LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQTLILS+N+IKDWP 
Sbjct: 361 ELSMEELGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKDWPG 420

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQEL 480
           +IL SLSSLSCLKLDNNPLRQ+PSDGF+ +P LQILDLS N ASL + P FSSLP+LQEL
Sbjct: 421 SILKSLSSLSCLKLDNNPLRQIPSDGFEMVPKLQILDLSGNAASLLDGPAFSSLPYLQEL 480

Query: 481 YLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
           YLRRM+L E P+DI+ L QLRILDLSQNSLQSIP G K LTSL ELDLS+NNI+ LPPEL
Sbjct: 481 YLRRMRLSEVPSDIVGLHQLRILDLSQNSLQSIPVGLKALTSLQELDLSNNNIAVLPPEL 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431828|ref|XP_004133702.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus] gi|449478165|ref|XP_004155239.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/534 (75%), Positives = 461/534 (86%), Gaps = 1/534 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL DVP+EVY++ D     +KWWEAV+LQKLILAHNNI+ L
Sbjct: 1   MDRILKAARASGSLNLSNRSLSDVPSEVYRSLDAVQADEKWWEAVELQKLILAHNNIQLL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
            E+LRNL  L VLNVSHNKLSELPAAIGEL  LK LDVSFNS+M+IPDEIGSAT+LVKFD
Sbjct: 61  SEELRNLSSLAVLNVSHNKLSELPAAIGELPALKLLDVSFNSLMRIPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN L+ELP  LGRC +LSD KASNN I+SLP +LA+CSK++KLD+EGNKL V+S NLI
Sbjct: 121 CSSNHLQELPGGLGRCSDLSDLKASNNSISSLPVELANCSKLTKLDMEGNKLKVISKNLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWT+LTEL ASKNLLN +PE IGSL RLIRL++ QN+I SIP SI  CC+LAE YMGNN
Sbjct: 181 ASWTLLTELNASKNLLNELPENIGSLLRLIRLNVFQNKISSIPPSIKDCCALAELYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ++S LP E+G LS LGTLDLHSNQLKEY VEAC+L L VLDLSNNSLSGLPPEIGKMTTL
Sbjct: 241 SVSTLPVEIGALSHLGTLDLHSNQLKEYPVEACKLHLLVLDLSNNSLSGLPPEIGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE-DLITMATRLSVTS 359
           RKLLLTGNP+RTLRSSLV+GPTPALL++LRSRLPENE  EAS+T+  D+ITMA R+S+TS
Sbjct: 301 RKLLLTGNPIRTLRSSLVSGPTPALLRFLRSRLPENEGPEASSTQRGDVITMAARMSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG  LSA+PSE+WE+ E+ KLDLS+NS QELP ELSSC SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGQGLSAVPSEVWESSELMKLDLSKNSFQELPVELSSCTSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL +L +L+CLKLDNNPL+Q+PSDGF+ +  LQ+LDLS NIA LPE+P FSSLP LQE
Sbjct: 421 GAILKTLPNLTCLKLDNNPLKQIPSDGFQAVSKLQVLDLSGNIACLPEHPTFSSLPLLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 533
           LYLRRM+L E P+ IL L+ +RILDLSQNS+Q +PE  KNL +LTELDLSDNNI
Sbjct: 481 LYLRRMRLHEVPSSILGLKHMRILDLSQNSIQLVPEELKNLAALTELDLSDNNI 534

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544024|ref|XP_003540456.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/536 (76%), Positives = 470/536 (87%), Gaps = 1/536 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGD-KWWEAVDLQKLILAHNNIEK 59
           MDR+LKAAR SGSLNLSNRSL ++P+EVY+N +  G GD KWWEAV+LQKLILAHN+I  
Sbjct: 1   MDRLLKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGGDDKWWEAVELQKLILAHNSIAS 60

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119
           LKEDLRNLP L VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+ IP+EIGSA +LVK 
Sbjct: 61  LKEDLRNLPFLAVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVNIPEEIGSAMSLVKL 120

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+NQL ELPSSLGRCL LSD K SNN ITSLPEDLA+CSK+SKLD+EGNKLTV+S NL
Sbjct: 121 DCSNNQLTELPSSLGRCLELSDLKGSNNLITSLPEDLANCSKLSKLDMEGNKLTVISENL 180

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
           I+SWTMLTE  ASKNLLNG+P +IG LSRLIR+ +HQNRI +IPSSI GC SL E Y+GN
Sbjct: 181 ISSWTMLTEFNASKNLLNGIPTSIGGLSRLIRVYVHQNRISAIPSSIIGCHSLTELYLGN 240

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
           N +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTT
Sbjct: 241 NNISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTT 300

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           LRKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++I MATRLS+TS
Sbjct: 301 LRKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVIAMATRLSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELS+EG+ LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQTLILS+N+IK+WP
Sbjct: 361 KELSMEGLGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKEWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            +IL SLSSLSCLKLDNNPL+Q+P DGF+ +P LQILDLS N ASL + P FSSLP+LQE
Sbjct: 421 GSILKSLSSLSCLKLDNNPLKQIPLDGFEVVPKLQILDLSGNAASLLDVPAFSSLPYLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535
           LYLRRM+L E P+DI+ LQQLRILDLSQNSLQSIP G K+LTSL ELDLS+NNIS 
Sbjct: 481 LYLRRMRLSEVPSDIVGLQQLRILDLSQNSLQSIPVGLKDLTSLKELDLSNNNISV 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683597|ref|NP_188160.2| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|21703129|gb|AAM74505.1| AT3g15410/MJK13_7 [Arabidopsis thaliana] gi|24111377|gb|AAN46812.1| At3g15410/MJK13_7 [Arabidopsis thaliana] gi|332642149|gb|AEE75670.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/541 (72%), Positives = 457/541 (84%), Gaps = 1/541 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+IE L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHNKLS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+LKELP S+GRCL+LSD KA+NN I+SLPED+ +CSK+SKLDVEGNKLT LS N I
Sbjct: 121 CSSNRLKELPDSIGRCLDLSDLKATNNQISSLPEDMVNCSKLSKLDVEGNKLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTML EL A KN+L  +P+ IGSLSRLIRLDLHQN+I S+P SI GC SL EFY+G N
Sbjct: 181 ASWTMLAELNACKNMLGVLPQNIGSLSRLIRLDLHQNKISSVPPSIGGCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLS +PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSDVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  LQILDLS N  S  E+P F  LP L+E
Sbjct: 421 GAILKSLPNLMCLKLDNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+G KN+TSL  LD+S+NNIS+LPPE
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPKGIKNMTSLKHLDISNNNISSLPPE 540

Query: 540 L 540
           L
Sbjct: 541 L 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830120|ref|XP_002882942.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297328782|gb|EFH59201.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/541 (72%), Positives = 458/541 (84%), Gaps = 1/541 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+I  L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPIEVYQCLETTGEGENWWEAVDLQKLILAHNDIAVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHN LS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNNLSQLPAAIGELTAMKSLDVSFNSITELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+ KELP S+GRCL+LSD KASNN I+SLPED+ +CSK+SKLDVEGN+LT LS N I
Sbjct: 121 CSSNRFKELPESIGRCLDLSDLKASNNQISSLPEDMVNCSKLSKLDVEGNRLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKN+L+G+P+ IGSLSRLIRLDLHQN+ILS+P SI  C SL EFY+G N
Sbjct: 181 ASWTMLTELNASKNMLSGLPQNIGSLSRLIRLDLHQNKILSVPPSIGDCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLSA+PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSAVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  L+ILDLS N  S  E+P F  LP LQE
Sbjct: 421 GAILKSLPNLVCLKLDNNPLTQIPLDGFQAVSGLRILDLSGNAVSFREHPKFCHLPQLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+  KN+TSL  LD+S+NNIS+LPPE
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPKSIKNMTSLKHLDISNNNISSLPPE 540

Query: 540 L 540
           L
Sbjct: 541 L 541

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7021726|gb|AAF35407.1| unknown protein [Arabidopsis thaliana]

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/541 (72%), Positives = 457/541 (84%), Gaps = 1/541 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+IE L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHNKLS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+LKELP S+GRCL+LSD KA+NN I+SLPED+ +CSK+SKLDVEGNKLT LS N I
Sbjct: 121 CSSNRLKELPDSIGRCLDLSDLKATNNQISSLPEDMVNCSKLSKLDVEGNKLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTML EL A KN+L  +P+ IGSLSRLIRLDLHQN+I S+P SI GC SL EFY+G N
Sbjct: 181 ASWTMLAELNACKNMLGVLPQNIGSLSRLIRLDLHQNKISSVPPSIGGCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLS +PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSDVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  LQILDLS N  S  E+P F  LP L+E
Sbjct: 421 GAILKSLPNLMCLKLDNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+G KN+TSL  LD+S+NNIS+LPPE
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPKGIKNMTSLKHLDISNNNISSLPPE 540

Query: 540 L 540
           L
Sbjct: 541 L 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	543
ZFIN|ZDB-GENE-030131-6062	601	lrrc40 "leucine rich repeat co	0.937	0.846	0.287	3.6e-50
MGI|MGI:1914394	602	Lrrc40 "leucine rich repeat co	0.937	0.845	0.291	2.6e-47
UNIPROTKB|E1BU15	582	SHOC2 "Leucine-rich repeat pro	0.675	0.630	0.303	7.2e-36
WB|WBGene00004929	559	soc-2 [Caenorhabditis elegans	0.736	0.715	0.286	2.2e-35
UNIPROTKB|Q22875	559	soc-2 "Leucine-rich repeat pro	0.736	0.715	0.286	2.2e-35
DICTYBASE|DDB_G0294094	510	lrrA "leucine-rich repeat-cont	0.740	0.788	0.303	5.1e-35
ZFIN|ZDB-GENE-050208-523	561	shoc2 "soc-2 suppressor of cle	0.666	0.645	0.301	1.2e-34
WB|WBGene00002632	699	let-413 [Caenorhabditis elegan	0.650	0.505	0.296	4.6e-34
UNIPROTKB|O61967	699	let-413 "Protein lap1" [Caenor	0.650	0.505	0.296	4.6e-34
RGD|1308146	582	Shoc2 "soc-2 (suppressor of cl	0.666	0.621	0.299	8.5e-34

ZFIN|ZDB-GENE-030131-6062 lrrc40 "leucine rich repeat containing 40" [Danio rerio (taxid:7955)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 161/560 (28%), Positives = 258/560 (46%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
             +LKAAR SG          +VP  V++ N D   EA      G  D+WWE  DL KL+L+
Sbjct:    29 LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct:    89 SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct:   149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct:   209 SLPP-AISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLPE-LPCCKTLK 266

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E + GNN +  L AE L  L+ L  L+L  N++K    E                    P
Sbjct:   267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct:   327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query:   352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
              ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P      
Sbjct:   387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVP------ 440

Query:   403 ASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
                       ++I D  D++              N L  +P+D F  +  L  +DL  N+
Sbjct:   441 ----------HRIVDLKDSLADINLGF-------NKLTTIPAD-FCHLKQLMHIDLRNNL 482

Query:   463 A-SLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNL 520
               SLP       L  L+ + L   + +  P              S N +  I     K L
Sbjct:   483 LISLPME--LEGLIKLRSVILSFNRFKSFPEVLYRIPSLETILISSNQVGGIDAVQMKTL 540

Query:   521 TSLTELDLSDNNISALPPEL 540
             + L+ LDLS+N+I  +PPEL
Sbjct:   541 SRLSTLDLSNNDIMQVPPEL 560

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1914394 Lrrc40 "leucine rich repeat containing 40" [Mus musculus (taxid:10090)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 163/559 (29%), Positives = 263/559 (47%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
             +LKAAR+SG          +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct:    31 LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct:    91 SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
               L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct:   151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P   S C  L 
Sbjct:   211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLPEFPS-CRQLK 268

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E ++  N +  L AE L  L  +  LDL  N+L+    E A                  P
Sbjct:   269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct:   329 CSLGNLH-LKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query:   352 AT--RLSV----TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
              +  R+++    T K L       + IP ++++A +   IT ++ S+N + E+P  +   
Sbjct:   388 PSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVEL 447

Query:   403 ASLQTLI-LSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
               +   I LS NK+      +             NN L  +P +    +  LQ ++LS+N
Sbjct:   448 KEMVLDINLSFNKLSFISHELCLLQKLTFLDLR-NNFLSSLPEE-MSSLTKLQTINLSFN 505

Query:   462 IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEGFKNLT 521
                      F   P +  LY  R+   EA                  S+   P+  K + 
Sbjct:   506 --------RFKVFPEV--LY--RISTLEA---------VLISNNQVGSVD--PQKMKLME 542

Query:   522 SLTELDLSDNNISALPPEL 540
             +L  LDL +N++  +PPEL
Sbjct:   543 NLNTLDLQNNDLLQIPPEL 561

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BU15 SHOC2 "Leucine-rich repeat protein SHOC-2" [Gallus gallus (taxid:9031)]

 Score = 389 (142.0 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 117/386 (30%), Positives = 190/386 (49%)

Query:    42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             +    L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N
Sbjct:   189 YRLTSLATLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHN 248

Query:   102 SIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161
              +  +P+EIGS T +   D   N+L +LP ++G   +LS      N ++++P+ LA CS+
Sbjct:   249 QLEHLPEEIGSCTQITNLDLQHNELLDLPETIGNLSSLSRLGLRYNRLSAIPKSLAKCSE 308

Query:   162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRIL 220
             + +L++E N ++ L   L++S   LT L  ++N     P    S  S +  L++  NRI 
Sbjct:   309 LDELNLENNNISTLPEGLLSSLVKLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRIN 368

Query:   221 SIPSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXX 279
              IP  I S    L++  M +N L++LP + G  + +  L+L +NQL +   +        
Sbjct:   369 KIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLE 428

Query:   280 XXXXXXXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                         P  IG +  LR+L L  N L +L + +      A LK L+  +  N  
Sbjct:   429 VLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQ 482

Query:   339 SEASTTKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELP 396
                 TT    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP
Sbjct:   483 L---TTLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLP 534

Query:   397 PELSSCASLQTLILSRNKIKDWPDAI 422
              EL+ C+ L  + +    +   P  I
Sbjct:   535 FELALCSKLSIMSIENCPLSHLPPQI 560

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

WB|WBGene00004929 soc-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 383 (139.9 bits), Expect = 2.2e-35, P = 2.2e-35
 Identities = 128/447 (28%), Positives = 207/447 (46%)

Query:    43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
             + V+L+KL L+ N +  L + L +L  L  L++ HNKL+E+P+ I ++  L++L + +N 
Sbjct:   117 QLVNLKKLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPSVIYKIGSLETLWLRYNR 176

Query:   103 IMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             I+ + ++IG+ + L   D   N+++ELPS++G+  +L     S N +T +PE++ DC  +
Sbjct:   177 IVAVDEQIGNLSKLKMLDVRENKIRELPSAIGKLTSLVVCLVSYNHLTRVPEEIGDCHSL 236

Query:   163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             ++LD++ N L+ L                        P +IG L  L+R+ +  N+I  I
Sbjct:   237 TQLDLQHNDLSEL------------------------PYSIGKLVNLVRIGIRYNKIRCI 272

Query:   223 PSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQXXXXXXX 281
             PS +  C  L EF + +N L  LP  L   L K+ T++L  N+L  +     Q       
Sbjct:   273 PSELESCQQLEEFIVESNHLQLLPPNLLTMLPKIHTVNLSRNELTAFPAGGPQQFVSTVT 332

Query:   282 XXXXXXXXXPPEIG---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE-NE 337
                         IG   K T L KL L  N L +L   + +  +   L    ++L    E
Sbjct:   333 INMEHNQISKIPIGIFSKATRLTKLNLKENELVSLPLDMGSWTSITELNLSTNQLKVLPE 392

Query:   338 DSEASTTKEDLITMATRLSVTS---------KELSLEGMNLSAIPSEIWEAGEITKLDLS 388
             D E     E L+    +L             +EL LE   L  +P+EI     +TKL + 
Sbjct:   393 DIEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQ 452

Query:   389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 448
              N I  LP  + +  SLQ L L  N +   P+ I            DN+ L  +P   F 
Sbjct:   453 SNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLP---F- 508

Query:   449 DIPMLQILDLSYNIASLPENPPFSSLP 475
             ++ + Q L+    I S+ EN P S +P
Sbjct:   509 ELALCQSLE----IMSI-ENSPLSQIP 530

GO:0002119 "nematode larval development" evidence=IMP

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IGI

GO:0007517 "muscle organ development" evidence=IMP

GO:0031344 "regulation of cell projection organization" evidence=IMP

UNIPROTKB|Q22875 soc-2 "Leucine-rich repeat protein soc-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 383 (139.9 bits), Expect = 2.2e-35, P = 2.2e-35
 Identities = 128/447 (28%), Positives = 207/447 (46%)

Query:    43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
             + V+L+KL L+ N +  L + L +L  L  L++ HNKL+E+P+ I ++  L++L + +N 
Sbjct:   117 QLVNLKKLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPSVIYKIGSLETLWLRYNR 176

Query:   103 IMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             I+ + ++IG+ + L   D   N+++ELPS++G+  +L     S N +T +PE++ DC  +
Sbjct:   177 IVAVDEQIGNLSKLKMLDVRENKIRELPSAIGKLTSLVVCLVSYNHLTRVPEEIGDCHSL 236

Query:   163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             ++LD++ N L+ L                        P +IG L  L+R+ +  N+I  I
Sbjct:   237 TQLDLQHNDLSEL------------------------PYSIGKLVNLVRIGIRYNKIRCI 272

Query:   223 PSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQXXXXXXX 281
             PS +  C  L EF + +N L  LP  L   L K+ T++L  N+L  +     Q       
Sbjct:   273 PSELESCQQLEEFIVESNHLQLLPPNLLTMLPKIHTVNLSRNELTAFPAGGPQQFVSTVT 332

Query:   282 XXXXXXXXXPPEIG---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE-NE 337
                         IG   K T L KL L  N L +L   + +  +   L    ++L    E
Sbjct:   333 INMEHNQISKIPIGIFSKATRLTKLNLKENELVSLPLDMGSWTSITELNLSTNQLKVLPE 392

Query:   338 DSEASTTKEDLITMATRLSVTS---------KELSLEGMNLSAIPSEIWEAGEITKLDLS 388
             D E     E L+    +L             +EL LE   L  +P+EI     +TKL + 
Sbjct:   393 DIEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQ 452

Query:   389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 448
              N I  LP  + +  SLQ L L  N +   P+ I            DN+ L  +P   F 
Sbjct:   453 SNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLP---F- 508

Query:   449 DIPMLQILDLSYNIASLPENPPFSSLP 475
             ++ + Q L+    I S+ EN P S +P
Sbjct:   509 ELALCQSLE----IMSI-ENSPLSQIP 530

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

DICTYBASE|DDB_G0294094 lrrA "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 128/422 (30%), Positives = 190/422 (45%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA--IGELHMLKSLDVSFNSIMKIPDEI 110
             A N I  +  ++ +L  L  L +S+NKL   P    IG L  L  LD+S N +  +P EI
Sbjct:    68 AKNRINYIPPEIGSLATLKQLFLSNNKLFYTPITPNIGALKNLTRLDLSSNQLDDLPVEI 127

Query:   111 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170
              +  AL   D S NQL+  P   G+  NL  F  S N + SLP +++   K+ +L+V  N
Sbjct:   128 SNCEALEYLDISDNQLQSFPLEFGKLYNLQVFNCSKNSLKSLPSEISGWVKLEELNVSNN 187

Query:   171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
             +L  L N  I    +L+ L    N L  +PE + S+  L  LDL  N  L     +S   
Sbjct:   188 QLAFLPNQ-ICLLGLLSTLNVGFNKLQQLPEELSSMVSLTNLDLKVNPPLQYVPQLSNLR 246

Query:   231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSN-QLKEYCVE-ACQXXXXXXXXXXXXXX 288
              L    + N  ++ LP  LG LS+L  LD+  N QLKE   + A                
Sbjct:   247 QLKILSIRNLQITHLPLGLGLLSELIELDIRDNPQLKEIPYDIATLINLQKLDLFGNNMR 306

Query:   289 XXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP-ALLKYLRSRLPENEDSEASTTKED 347
               P E+G +  L+ L L  N L     ++ N P+    L  L+  L  N    A     +
Sbjct:   307 IVPREVGNLINLQTLDLRQNKL-----TIDNIPSEIGKLVNLKKLLLSNNLLIA--LPPE 359

Query:   348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
             + +M        KE       L AIP+EI E   +TK++LS N +  +P    + + LQ 
Sbjct:   360 IASMKAL-----KEFEASNNQLQAIPTEIGELSGLTKINLSGNKLTSIPASFGNLSELQI 414

Query:   408 LILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
               L  N+I + P  +             +N L ++P + F D+  L ILD+ +N  ++P 
Sbjct:   415 CDLKSNEIAELPTTLDGLKSCTKIDLS-HNMLTELPWE-FGDLIGLTILDVGHNPLTIPP 472

Query:   468 NP 469
             NP
Sbjct:   473 NP 474

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0043327 "chemotaxis to cAMP" evidence=IMP

GO:0043326 "chemotaxis to folate" evidence=IMP

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0031152 "aggregation involved in sorocarp development" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-050208-523 shoc2 "soc-2 suppressor of clear homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 377 (137.8 bits), Expect = 1.2e-34, P = 1.2e-34
 Identities = 115/381 (30%), Positives = 185/381 (48%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   173 LTTLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 232

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N L +LP ++G   +++      N ++++P  LA C ++ +L+
Sbjct:   233 PKEIGNCTQITNLDLQHNDLLDLPETIGNLASINRLGLRYNRLSAIPRSLAKCRELEELN 292

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++VL   L++S   LT L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   293 LENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRINKIPFG 352

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   + C           
Sbjct:   353 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLS 412

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  IG +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   413 NNLLKKLPYGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 463

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL   +P EI     +  L L+ N ++  LP EL+ 
Sbjct:   464 TLPRGIGHLTNLTY----LGL-GENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFELAL 518

Query:   402 CASLQTLILSRNKIKDWPDAI 422
             C+ L  + +    +   P  I
Sbjct:   519 CSKLSIMSIENCPLSHLPPQI 539

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00002632 let-413 [Caenorhabditis elegans (taxid:6239)]

 Score = 377 (137.8 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 109/368 (29%), Positives = 176/368 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L  L ++
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVLDVA 366

Query:   412 RNKIKDWP 419
              NK+   P
Sbjct:   367 SNKLPHLP 374

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007043 "cell-cell junction assembly" evidence=IMP

GO:0030029 "actin filament-based process" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

UNIPROTKB|O61967 let-413 "Protein lap1" [Caenorhabditis elegans (taxid:6239)]

 Score = 377 (137.8 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 109/368 (29%), Positives = 176/368 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L  L ++
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVLDVA 366

Query:   412 RNKIKDWP 419
              NK+   P
Sbjct:   367 SNKLPHLP 374

GO:0045108 "regulation of intermediate filament polymerization or depolymerization" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEP

GO:0015031 "protein transport" evidence=IEP

GO:0005912 "adherens junction" evidence=IDA

RGD|1308146 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 371 (135.7 bits), Expect = 8.5e-34, P = 8.5e-34
 Identities = 114/381 (29%), Positives = 186/381 (48%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D+RNLP L+ L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   194 LTTLYLRFNRITAVEKDVRNLPRLSTLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 253

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N+L +LP ++G   +L+      N ++++P  LA CS + +L+
Sbjct:   254 PKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLNRLGLRYNRLSAIPRSLAKCSALEELN 313

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++ L  +L++S   L  L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   314 LENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFG 373

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   +             
Sbjct:   374 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILS 433

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  +G +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   434 NNLLKKLPHGLGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 484

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP EL+ 
Sbjct:   485 TLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELAL 539

Query:   402 CASLQTLILSRNKIKDWPDAI 422
             C+ L  + +    +   P  I
Sbjct:   540 CSKLSIMSIENCPLSHLPPQI 560

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0019903 "protein phosphatase binding" evidence=IEA;ISO;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CRC8	LRC40_MOUSE	No assigned EC number	0.3279	0.9337	0.8421	yes	no
Q9H9A6	LRC40_HUMAN	No assigned EC number	0.3339	0.9355	0.8438	yes	no
Q5M8G4	LRC40_XENTR	No assigned EC number	0.3447	0.9613	0.8628	yes	no
Q5ZLN0	LRC40_CHICK	No assigned EC number	0.3357	0.9318	0.8391	yes	no
Q5RFE9	LRC40_PONAB	No assigned EC number	0.3357	0.9355	0.8438	yes	no
Q7SXW3	LRC40_DANRE	No assigned EC number	0.3232	0.9373	0.8469	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110941	hypothetical protein (581 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.8595.1.1	hypothetical protein (375 aa)			•						0.490
	eugene3.00410223	hypothetical protein (478 aa)			•						0.488
	eugene3.00131095	annotation not avaliable (394 aa)			•						0.484
	eugene3.00190610	annotation not avaliable (370 aa)			•						0.483
	fgenesh4_pg.C_LG_XVIII001032	hypothetical protein (534 aa)			•						0.478
	eugene3.100750001	hypothetical protein (275 aa)			•						0.478
	fgenesh4_pg.C_scaffold_11988000001	hypothetical protein (315 aa)			•						0.455
	fgenesh4_pg.C_scaffold_13412000001	hypothetical protein (444 aa)			•						0.453
	eugene3.06320001	hypothetical protein (344 aa)			•						0.450
	gw1.XI.3221.1	hypothetical protein (380 aa)			•						0.445

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	543
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-18
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-15
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-15
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	5e-13
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-11
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	4e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	2e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	6e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-04
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  119 bits (299), Expect = 3e-28
 Identities = 140/493 (28%), Positives = 219/493 (44%), Gaps = 54/493 (10%)

Query: 66  NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSS 123
           N   +  +++S   +S ++ +AI  L  ++++++S N +   IPD+I + ++ +++   S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 124 NQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           N         G   NL     SNN ++  +P D+   S +  LD+ GN   VL   +  S
Sbjct: 127 NNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN---VLVGKIPNS 183

Query: 183 WTMLTEL----IASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYM 237
            T LT L    +AS  L+  +P  +G +  L  + L  N +   IP  I G  SL    +
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 238 GNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPE- 293
             N L+  +P+ LG L  L  L L+ N+L      +     +L  LDLS+NSLSG  PE 
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           + ++  L  L L  N           G  P  L    + LP                   
Sbjct: 304 VIQLQNLEILHLFSNNF--------TGKIPVAL----TSLP------------------- 332

Query: 354 RLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILS 411
           RL V    L L     S  IP  + +   +T LDLS N++  E+P  L S  +L  LIL 
Sbjct: 333 RLQV----LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
            N ++      L +  SL  ++L +N         F  +P++  LD+S N      N   
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 472 SSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSD 530
             +P LQ L L R +      D    ++L  LDLS+N    ++P    +L+ L +L LS+
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 531 NNISA-LPPELVS 542
           N +S  +P EL S
Sbjct: 509 NKLSGEIPDELSS 521

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  117 bits (294), Expect = 2e-27
 Identities = 144/465 (30%), Positives = 216/465 (46%), Gaps = 32/465 (6%)

Query: 67  LPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN 124
           +P L  L++S+N LS E+P  IG    LK LD+  N ++ KIP+ + + T+L     +SN
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 125 QL-KELPSSLGRCLNLS-DFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           QL  ++P  LG+  +L   +   NN    +P ++   + ++ LD+  N LT    + + +
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYM-GN 239
              L  L   +N L+G +P +I SL +LI LDL  N +   IP  +    +L   ++  N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVE--ACQLRLSVLDLSNNSLSG-LPPEIGK 296
           N    +P  L  L +L  L L SN+      +       L+VLDLS N+L+G +P  +  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS----RLPENEDSEASTTKEDLITMA 352
              L KL+L  N L         G  P  L   RS    RL +N  S       +L +  
Sbjct: 379 SGNLFKLILFSNSL--------EGEIPKSLGACRSLRRVRLQDNSFSG------ELPSEF 424

Query: 353 TRLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
           T+L +    L +   NL   I S  W+   +  L L+RN      P+      L+ L LS
Sbjct: 425 TKLPLVYF-LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLS 483

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
           RN+        L SLS L  LKL  N L     D       L  LDLS+N  S      F
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 472 SSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIP 514
           S +P L +L L + QL  E P ++  ++ L  +++S N L  S+P
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.5 bits (222), Expect = 1e-18
 Identities = 92/282 (32%), Positives = 139/282 (49%), Gaps = 24/282 (8%)

Query: 46  DLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI 103
           +L+ L L  NN   K+   L +LP L VL +  NK S E+P  +G+ + L  LD+S N++
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 104 M-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS 160
             +IP+ + S+  L K    SN L+ E+P SLG C +L   +  +N  +  LP +     
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTEL-IASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
            +  LD+  N L    N+       L  L +A      G+P++ GS  RL  LDL +N+ 
Sbjct: 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQF 487

Query: 220 L-SIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLK--------EYC 269
             ++P  +     L +  +  N LS  +P EL    KL +LDL  NQL         E  
Sbjct: 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Query: 270 VEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL 310
           V      LS LDLS N LSG +P  +G + +L ++ ++ N L
Sbjct: 548 V------LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 78.5 bits (193), Expect = 1e-15
 Identities = 87/263 (33%), Positives = 124/263 (47%), Gaps = 2/263 (0%)

Query: 44  AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           AV+   L L+ N +  L   L  L  L +L+ S     +    +  L  L SLD++ N +
Sbjct: 46  AVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL 105

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGR-CLNLSDFKASNNCITSLPEDLADCSKM 162
                E+   T L   D  +N + ++P  +G    NL +   S+N I SLP  L +   +
Sbjct: 106 RSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNL 165

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             LD+  N L+ L   L    + L  L  S N ++ +P  I  LS L  LDL  N I+ +
Sbjct: 166 KNLDLSFNDLSDLPKLLSNL-SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL 224

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282
            SS+S   +L+   + NN L  LP  +G LS L TLDL +NQ+           L  LDL
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284

Query: 283 SNNSLSGLPPEIGKMTTLRKLLL 305
           S NSLS   P I  +  L +LLL
Sbjct: 285 SGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 77.3 bits (190), Expect = 3e-15
 Identities = 77/292 (26%), Positives = 122/292 (41%), Gaps = 26/292 (8%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM-LKSLDVSFNSIM 104
            L  L L  N +     +L  L  LT L++ +N ++++P  IG L   LK LD+S N I 
Sbjct: 94  PLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
            +P  + +   L   D S N L +LP  L    NL++   S N I+ LP ++   S    
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSA--- 210

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
                                L EL  S N +  +  ++ +L  L  L+L  N++  +P 
Sbjct: 211 ---------------------LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE 249

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284
           SI    +L    + NN +S++ + LG L+ L  LDL  N L         L L +  L N
Sbjct: 250 SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
             L+    E+   + L    +  N   +   +L    +   L  L + L E+
Sbjct: 309 LLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDES 360

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 71.3 bits (174), Expect = 5e-13
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 21/220 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAV------DLQKLILAHNNIEKLKEDLRN 66
           +L L N  L+ +P  +  N            ++       +Q++ L+ N I +L E L +
Sbjct: 203 TLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPS 262

Query: 67  LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
              L  L++ HNK+S LP  + E   L+ L V  NSI  +P  + S   +   +  SN L
Sbjct: 263 A--LQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
             LP +L     L   +A  N +TSLP  L    ++  LDV  N++TVL   L  +   +
Sbjct: 317 TALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLPPT---I 369

Query: 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           T L  S+N L  +PE + +  ++  +   +N ++ +P S+
Sbjct: 370 TTLDVSRNALTNLPENLPAALQI--MQASRNNLVRLPESL 407

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 65.9 bits (160), Expect = 3e-11
 Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 21/235 (8%)

Query: 310 LRTLRSSLVNGPTPALLKYLR-SRLPENEDSEAST---TKEDLITMATRLSVTSKELSLE 365
           ++ +R  L N  T   LK L  + +P     + +T      +L ++   L    K L   
Sbjct: 169 VQRMRDCLKNNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYAN 228

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425
              L++IP+ + +   I +++LS N I ELP  L S  +LQ+L L  NKI   P+ +   
Sbjct: 229 SNQLTSIPATLPDT--IQEMELSINRITELPERLPS--ALQSLDLFHNKISCLPENLPEE 284

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485
           L  LS      N +R +P+     I  L +   S  + +LPE  P    P L+ L     
Sbjct: 285 LRYLSVYD---NSIRTLPAHLPSGITHLNVQSNS--LTALPETLP----PGLKTLEAGEN 335

Query: 486 QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
            L   P  +    +L++LD+S+N +  +PE      ++T LD+S N ++ LP  L
Sbjct: 336 ALTSLPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENL 386

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 65.5 bits (159), Expect = 4e-11
 Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 27/220 (12%)

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           +N+LK LP +L    N+    A++N +TS+P  L D  +  +L +  N++T L   L ++
Sbjct: 208 NNELKSLPENLQG--NIKTLYANSNQLTSIPATLPDTIQEMELSI--NRITELPERLPSA 263

Query: 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
              L  L    N ++ +PE +     L  L ++ N I ++P+ +     +    + +N+L
Sbjct: 264 ---LQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 243 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
           +ALP  L     L TL+   N L      +    L VLD+S N ++ LP  +    T+  
Sbjct: 317 TALPETLP--PGLKTLEAGENALTSL-PASLPPELQVLDVSKNQITVLPETLPP--TITT 371

Query: 303 LLLTGNPLRTLRSSLVNGPTPALLKYLRS------RLPEN 336
           L ++ N L  L  +L     PA L+ +++      RLPE+
Sbjct: 372 LDVSRNALTNLPENL-----PAALQIMQASRNNLVRLPES 406

Length = 754

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.1 bits (148), Expect = 5e-10
 Identities = 96/372 (25%), Positives = 143/372 (38%), Gaps = 43/372 (11%)

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229
             L    +NL +       L  S N L  +P ++  L  L  L       L    ++   
Sbjct: 33  INLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNL 92

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY--CVEACQLRLSVLDLSNNSL 287
             L    +  N L +  +EL +L+ L +LDL +N + +    +   +  L  LDLS+N +
Sbjct: 93  LPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152

Query: 288 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
             LP  +  +  L+ L L+ N L  L   L N                            
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL------------------------ 188

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
                         L L G  +S +P EI     + +LDLS NSI EL   LS+  +L  
Sbjct: 189 ------------NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSG 236

Query: 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
           L LS NK++D P+  + +LS+L  L L NN +  + S     +  L+ LDLS N  S   
Sbjct: 237 LELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA- 292

Query: 468 NPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELD 527
             P  +L  L    L  + L     ++     L   ++  N   S PE    L SL  L 
Sbjct: 293 -LPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLW 351

Query: 528 LSDNNISALPPE 539
             DN +      
Sbjct: 352 TLDNALDESNLN 363

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.4 bits (146), Expect = 9e-10
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 2/158 (1%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
             L+LS N++  LP  LS   SL  L  S     D  +  L +L  L  L L+ N LR  
Sbjct: 50  LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSEN-LLNLLPLPSLDLNLNRLRSN 108

Query: 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI 502
            S    ++  L  LDL  N  +           +L+EL L   ++   P+ +  L  L+ 
Sbjct: 109 IS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN 167

Query: 503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
           LDLS N L  +P+   NL++L  LDLS N IS LPPE+
Sbjct: 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI 205

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM 104
           L+++ L  N+   +L  +   LPL+  L++S+N L   + +   ++  L+ L ++ N   
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 105 -KIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKASNNCITS-LPEDLADCSK 161
             +PD  GS   L   D S NQ    +P  LG    L   K S N ++  +P++L+ C K
Sbjct: 466 GGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK 524

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL 220
           +  LD+  N+L+       +   +L++L  S+N L+G +P+ +G++  L+++++  N + 
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 221 -SIPSS 225
            S+PS+
Sbjct: 585 GSLPST 590

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 476 HLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 533
           +L+ L L   +L   P    + L  L++LDLS N+L SI    F  L SL  LDLS NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 63/215 (29%), Positives = 90/215 (41%), Gaps = 22/215 (10%)

Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L++  N L+ LPA    L  L        S+  +P        L +   S NQL 
Sbjct: 262 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP------PGLQELSVSDNQLA 315

Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   +   ++S  D +   L  L + L   W    
Sbjct: 316 SLPALPSE---LCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN 372

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLD----------LHQNRILSIPSSISGCCSLAEFYM 237
            L +   L +G+ E I S +RL  L           +  NR+ S+P   SG  SL+ +  
Sbjct: 373 RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVY-- 430

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA 272
             N L+ LP  L  LS   T++L  N L E  ++A
Sbjct: 431 -RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 52.1 bits (124), Expect = 6e-07
 Identities = 78/263 (29%), Positives = 117/263 (44%), Gaps = 39/263 (14%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           +T L +  N L+ LPA   E   L++L+VS N +  +P        L  F      L  L
Sbjct: 224 ITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 280

Query: 130 PSSLGRCL--------------NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           PS L +                 L +   S+N + SLP   A  S++ KL    N+LT  
Sbjct: 281 PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLT-- 335

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
             +L    + L EL  S N L  +P      S L +L  + NR+ S+P+  SG   L E 
Sbjct: 336 --SLPTLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALPSG---LKEL 387

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEY-CVEACQLRLSVLDLSNNSLSGLPPEI 294
            +  N L++LP      S+L  L +  N+L     + +  L LSV     N L+ LP  +
Sbjct: 388 IVSGNRLTSLPV---LPSELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPESL 441

Query: 295 GKMTTLRKLLLTGNPL--RTLRS 315
             +++   + L GNPL  RTL++
Sbjct: 442 IHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           +L++L LS N++   PD     L +L  L L  N L  +  + F  +P L+ LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 60/186 (32%), Positives = 91/186 (48%), Gaps = 4/186 (2%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
           +V    L+L    L  +PS +     +  L  S  S  +    L +   L +L L+ N++
Sbjct: 46  AVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL 105

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
           +     +L  L++L+ L LDNN +  +P         L+ LDLS N I SLP   P  +L
Sbjct: 106 RSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS--PLRNL 162

Query: 475 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534
           P+L+ L L    L + P  +  L  L  LDLS N +  +P   + L++L ELDLS+N+I 
Sbjct: 163 PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII 222

Query: 535 ALPPEL 540
            L   L
Sbjct: 223 ELLSSL 228

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 499 QLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 539
            L+ LDLS N L  IP+G FK L +L  LDLS NN++++ PE
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE 42

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 382 ITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           +  LDLS N +  +P        +L+ L LS N +        + L SL  L L  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 245 LPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLSGLPPE-IGKMTTLR 301
           +P ++ KL  L +++L  N ++         +  L VLDLS NS +G  PE +G++T+LR
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 302 KLLLTGNPL 310
            L L GN L
Sbjct: 494 ILNLNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103
           L+ L L++N +  + +   + LP L VL++S N L+ +   A   L  L+SLD+S N++
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 491 PTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISALPPE 539
           P DI +L+ L+ ++LS NS++ +IP    ++TSL  LDLS N+ +   PE
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 6e-05
 Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 60  LKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALV 117
           +  D+  L  L  +N+S N +   +P ++G +  L+ LD+S+NS    IP+ +G  T+L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 118 KFDCSSNQLK-ELPSSLG-RCLNLSDFKASNN 147
             + + N L   +P++LG R L+ + F  ++N
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 498 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
             L  LDLS N +  +P    NL +L  LDLS N I+ L P
Sbjct: 1   TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 28/113 (24%)

Query: 429 LSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL 487
           +  L LDN  LR  +P+D                          S L HLQ + L    +
Sbjct: 420 IDGLGLDNQGLRGFIPND-------------------------ISKLRHLQSINLSGNSI 454

Query: 488 R-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISALPP 538
           R   P  +  +  L +LDLS NS   SIPE    LTSL  L+L+ N++S   P
Sbjct: 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 44/217 (20%)

Query: 360 KELSLEGMNL-----SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS-------LQT 407
           + L LEG  L      A+ S +     + +L LS N    +P  L S          LQ 
Sbjct: 26  QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85

Query: 408 LILSRNKIKDWPDAILTSL---SSLSCLKLDNNPLRQVP----SDGFKDIPM-LQILDLS 459
           L LS N +      +L SL   SSL  LKL+NN L        + G KD+P  L+ L L 
Sbjct: 86  LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145

Query: 460 YN---------IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-----RLQQLRILDL 505
            N         +A         +   L+EL L    + +A    L         L +LDL
Sbjct: 146 RNRLEGASCEALAKA-----LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200

Query: 506 SQNSL-----QSIPEGFKNLTSLTELDLSDNNISALP 537
           + N L      ++ E   +L SL  L+L DNN++   
Sbjct: 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 13/135 (9%)

Query: 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
           L L    +   P  I   +++L    LDNN L+ +P +   +I  L     S  + S+P 
Sbjct: 183 LRLKILGLTTIPACIPEQITTLI---LDNNELKSLPENLQGNIKTLYAN--SNQLTSIPA 237

Query: 468 NPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELD 527
             P +    +QE+ L   ++ E P  +     L+ LDL  N +  +PE       L  L 
Sbjct: 238 TLPDT----IQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLPE--ELRYLS 289

Query: 528 LSDNNISALPPELVS 542
           + DN+I  LP  L S
Sbjct: 290 VYDNSIRTLPAHLPS 304

Length = 754

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 84/291 (28%), Positives = 124/291 (42%), Gaps = 33/291 (11%)

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           L+V  + LT L + L A    +T L+   N L  +P     L  L   ++  N++ S+P 
Sbjct: 206 LNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALPPELRTL---EVSGNQLTSLPV 259

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLS 283
              G   L+ F      L ALP+ L KL   G      NQL    V    L+ LSV D  
Sbjct: 260 LPPGLLELSIFSNPLTHLPALPSGLCKLWIFG------NQLTSLPVLPPGLQELSVSDNQ 313

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL----VNGPTPALLKYLRSRLPENEDS 339
             SL  LP E+ K+      L +   L TL S L    V+    A L  L S L +    
Sbjct: 314 LASLPALPSELCKLWAYNNQLTS---LPTLPSGLQELSVSDNQLASLPTLPSELYK---- 366

Query: 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399
                  + +T    L    KEL + G  L+++P       E+ +L +S N +  LP   
Sbjct: 367 --LWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV---LPSELKELMVSGNRLTSLPMLP 421

Query: 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           S   SL    + RN++   P++ L  LSS + + L+ NPL +      ++I
Sbjct: 422 SGLLSLS---VYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREI 468

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRR 484
           +L  L L NN L  +P   FK +P L++LDLS N + S+     FS LP L+ L L  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA-FSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 208 RLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            L  LDL  NR+  IP  +  G  +L    +  N L+++  E    L  L +LDL  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85
          L+ L L++N I  L   L NLP L  L++S NK+++L  
Sbjct: 3  LETLDLSNNQITDL-PPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 372 IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430
           IP++I +   +  ++LS NSI+  +PP L S  SL+ L LS N         L  L+SL 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 431 CLKLDNNPLR-QVPS 444
            L L+ N L  +VP+
Sbjct: 494 ILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +  LDLS N I +LPP LS+  +L+TL LS NKI D  
Sbjct: 3   LETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	543
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.38
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.35
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.29
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.27
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.01
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.99
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.84
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.83
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.79
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.63
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.57
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.55
PLN03150	623	hypothetical protein; Provisional	98.53
PLN03150	623	hypothetical protein; Provisional	98.48
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.48
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.46
KOG4341	483	consensus F-box protein containing LRR [General fu	98.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.41
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.38
KOG4341	483	consensus F-box protein containing LRR [General fu	98.35
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.31
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.3
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.29
PRK15386	426	type III secretion protein GogB; Provisional	98.24
PRK15386	426	type III secretion protein GogB; Provisional	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.23
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.22
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.18
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.5
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.21
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.15
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.35
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.22
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.18
smart00370	26	LRR Leucine-rich repeats, outliers.	96.18
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.11
KOG4308	478	consensus LRR-containing protein [Function unknown	96.05
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.34
KOG4308	478	consensus LRR-containing protein [Function unknown	95.31
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.72
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.15
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.06
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.99
smart00370	26	LRR Leucine-rich repeats, outliers.	90.99
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.53
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.88
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.09

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-56  Score=395.05  Aligned_cols=533  Identities=45%  Similarity=0.674  Sum_probs=474.9

Q ss_pred             ChHHHHHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcC
Q 009119            1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL   80 (543)
Q Consensus         1 ~~~~~~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l   80 (543)
                      +.+..+++++..+++++++.+.++|..+++..-...+.+.||+...+.++.+++|.++.+...+.++.-+.++++.+|.+
T Consensus         1 ~~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l   80 (565)
T KOG0472|consen    1 MQRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL   80 (565)
T ss_pred             CchHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh
Confidence            46788999999999999999999999999987777889999999999999999999999999999999999999999999


Q ss_pred             cccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCC
Q 009119           81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS  160 (543)
Q Consensus        81 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~  160 (543)
                      ..+|++++.+..++.++.++|++..+|+.++.+.++.++++++|.+..+++.++.+..++.++..+|.+.++|.++..+.
T Consensus        81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~  160 (565)
T KOG0472|consen   81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS  160 (565)
T ss_pred             hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCC
Q 009119          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (543)
Q Consensus       161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~  240 (543)
                      ++..+++.+|.+.......+. ++.|++++...|-++.+|+.++.+.+|.-|++..|++..+| .|.+|..|++++++.|
T Consensus       161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N  238 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN  238 (565)
T ss_pred             HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc
Confidence            999999999999998888666 99999999999999999999999999999999999999998 7899999999999999


Q ss_pred             CCCCCCcccc-CCCCCCEEeCCCCcccccchhhhcce-ecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCccccccc
Q 009119          241 ALSALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV  318 (543)
Q Consensus       241 ~l~~l~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~~-L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  318 (543)
                      .+..+|++.. .++++.+||+..|+++.+|...+... ++++|+++|.++.+|..++++ +|+.|.+.||+++.+...+.
T Consensus       239 ~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  239 QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII  317 (565)
T ss_pred             HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence            9999988655 88999999999999999999998877 999999999999999999999 99999999999999999999


Q ss_pred             CCCcHHHHHHHhccCCCCcccccccchhhH------HHhhhhcccccceeeeCCCCCCCCChhhhccCC---ccEEEcCC
Q 009119          319 NGPTPALLKYLRSRLPENEDSEASTTKEDL------ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSR  389 (543)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~---L~~L~l~~  389 (543)
                      .++....+.+++..................      .........+.+.+++++-.++.+|...+....   ++.++++.
T Consensus       318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK  397 (565)
T ss_pred             cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence            999999999998866544332221111100      001111224668899999999999998887655   88999999


Q ss_pred             CcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCC
Q 009119          390 NSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP  469 (543)
Q Consensus       390 ~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  469 (543)
                      |++..+|..+..+..+.+.-+..++..++.+..+..+++|..|++++|.+.+++.+ +...-+|+.++++.|.+... +.
T Consensus       398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l-P~  475 (565)
T KOG0472|consen  398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRML-PE  475 (565)
T ss_pred             chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccc-hH
Confidence            99999998888777766555555556677777789999999999999999999987 55667799999999987653 55


Q ss_pred             CCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCcCCCC
Q 009119          470 PFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE  539 (543)
Q Consensus       470 ~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~  539 (543)
                      ++.....++.+..++|++.+++.. +..+.+|+.||+.+|+++.+|..+++|++|+.|++.||+|+ .|++
T Consensus       476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~  545 (565)
T KOG0472|consen  476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH  545 (565)
T ss_pred             HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence            667778888888999999988766 89999999999999999999999999999999999999999 5543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-46  Score=407.49  Aligned_cols=504  Identities=27%  Similarity=0.329  Sum_probs=351.7

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccc-cchHH-hcCCCCCCEEEcCCCcCc-ccch
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKED-LRNLPLLTVLNVSHNKLS-ELPA   85 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~~L~l~~~~l~-~~~~   85 (543)
                      +.+++||++++++.......+..            +++|+.|++++|.+. .+|.. +..+++|++|++++|.+. .+|.
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~------------l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~  136 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFR------------LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR  136 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhC------------CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc
Confidence            35677788877776433333333            567788888877776 56643 447778888888777765 3332


Q ss_pred             hhhccCCCCEEEcCCCCCC-CCChhhcccCCccEEecCCCCcc-cccccccCCCCCCEEEccCCcCc-cCCcccccCCCc
Q 009119           86 AIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM  162 (543)
Q Consensus        86 ~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~~~L  162 (543)
                        ..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|
T Consensus       137 --~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  214 (968)
T PLN00113        137 --GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL  214 (968)
T ss_pred             --cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence              34677777777777766 56667777777777777777765 56667777777777777777766 456677777777


Q ss_pred             cEEEecCCcccccchhhhcccccccEEECCCCcCC-cCchhccCCCcccEEEccCCccc-cCCCCCcCCCCCcEEEcCCC
Q 009119          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN  240 (543)
Q Consensus       163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~  240 (543)
                      +.|++++|.+.......+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus       215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            77777777766444444677777777777777764 46666777777777777777765 45666667777777777777


Q ss_pred             CCC-CCCccccCCCCCCEEeCCCCcccccchh-hh-cceecEEEccCCCCCC-CChhhcCCCCCceeecCCCCcCccccc
Q 009119          241 ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVE-AC-QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSS  316 (543)
Q Consensus       241 ~l~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~~-~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~  316 (543)
                      .+. .+|..+..+++|+.|++++|.+...... .. ...|+.|++++|.+.+ +|..++.+++|+.|++++|.+......
T Consensus       295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence            766 5666677777777777777776643222 21 2347777777777765 666677777777777777766432111


Q ss_pred             ccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCC-CCChhhhccCCccEEEcCCCcCcc-
Q 009119          317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-  394 (543)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-  394 (543)
                      .+...        . .+........  .............++++.+++++|.+. .+|..+..++.|+.+++++|.++. 
T Consensus       375 ~~~~~--------~-~L~~L~l~~n--~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  443 (968)
T PLN00113        375 GLCSS--------G-NLFKLILFSN--SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR  443 (968)
T ss_pred             hHhCc--------C-CCCEEECcCC--EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence            11000        0 0000000000  000000111123467888888888776 567777778888888888888876 


Q ss_pred             CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCC
Q 009119          395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL  474 (543)
Q Consensus       395 l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  474 (543)
                      ++..+..+++|+.|++++|.+.+..+.. ...++|+.|++++|++.+.....+..+++|++|++++|.+....+..+..+
T Consensus       444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  522 (968)
T PLN00113        444 INSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC  522 (968)
T ss_pred             cChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence            5556677888888888888877655443 345788999999998887666668888999999999999888888888889


Q ss_pred             CcCceeecCCCccc-cCchhhhccCCCcEEeCCCCccc-cccccccCCCCCCeEeCCCCcCC-cCCC
Q 009119          475 PHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPP  538 (543)
Q Consensus       475 ~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~~~-~~~~  538 (543)
                      ++|++|++++|.++ .+|..+..+++|+.|++++|++. .+|..+..+++|+.+++++|++. .+|+
T Consensus       523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            99999999999888 56778888999999999999987 56888889999999999999887 4664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.5e-45  Score=399.75  Aligned_cols=484  Identities=28%  Similarity=0.368  Sum_probs=395.6

Q ss_pred             ccCccEEEcCccccc-cchHHhcCCCCCCEEEcCCCcCc-ccchhh-hccCCCCEEEcCCCCCC-CCChhhcccCCccEE
Q 009119           44 AVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAI-GELHMLKSLDVSFNSIM-KIPDEIGSATALVKF  119 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~-~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L  119 (543)
                      ..+++.|+++++.+. .++..|..+++|+.|++++|.+. .+|..+ ..+.+|++|++++|.+. .+|.  +.+++|++|
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            357999999999887 55788999999999999999987 687755 48999999999999987 4443  468999999


Q ss_pred             ecCCCCcc-cccccccCCCCCCEEEccCCcCc-cCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCC
Q 009119          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN  197 (543)
Q Consensus       120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~  197 (543)
                      ++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+.......+..+++|++|++++|.+.
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            99999998 67888999999999999999987 67888999999999999999987655566899999999999999985


Q ss_pred             -cCchhccCCCcccEEEccCCccc-cCCCCCcCCCCCcEEEcCCCCCC-CCCccccCCCCCCEEeCCCCcccccchh-hh
Q 009119          198 -GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVE-AC  273 (543)
Q Consensus       198 -~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~~  273 (543)
                       .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+....+. ..
T Consensus       226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  305 (968)
T PLN00113        226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI  305 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence             68888999999999999999887 67888999999999999999887 6788899999999999999998744333 22


Q ss_pred             -cceecEEEccCCCCCC-CChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHh
Q 009119          274 -QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM  351 (543)
Q Consensus       274 -~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (543)
                       ...|++|++++|.+.+ +|..+..+++|+.|++++|.+.......+..        .. .+...+.......  .....
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~--------~~-~L~~L~Ls~n~l~--~~~p~  374 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK--------HN-NLTVLDLSTNNLT--GEIPE  374 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC--------CC-CCcEEECCCCeeE--eeCCh
Confidence             2359999999999887 7778999999999999999876322111110        00 0000000000000  00001


Q ss_pred             hhhcccccceeeeCCCCCC-CCChhhhccCCccEEEcCCCcCcc-CChhhccCCCCceeecccCcCCCCCHHHhhCCCCC
Q 009119          352 ATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL  429 (543)
Q Consensus       352 ~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L  429 (543)
                      .......++.+++.+|.+. .+|..+..+++|+.|++++|.++. +|..+..++.|+.|++++|.+++..+..+..+++|
T Consensus       375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  454 (968)
T PLN00113        375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL  454 (968)
T ss_pred             hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence            1112356788888888876 677788888999999999998875 77788899999999999999988777777889999


Q ss_pred             CEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccc-cCchhhhccCCCcEEeCCCC
Q 009119          430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQN  508 (543)
Q Consensus       430 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~  508 (543)
                      +.|++++|++.+.....+ ..++|+.|++++|.+....+..+..+++|++|++++|.+. .+|..+..+++|++|++++|
T Consensus       455 ~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  533 (968)
T PLN00113        455 QMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN  533 (968)
T ss_pred             cEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC
Confidence            999999998876444433 4589999999999998888888899999999999999998 67888999999999999999


Q ss_pred             cccc-ccccccCCCCCCeEeCCCCcCC-cCCCCcC
Q 009119          509 SLQS-IPEGFKNLTSLTELDLSDNNIS-ALPPELV  541 (543)
Q Consensus       509 ~l~~-l~~~l~~~~~L~~L~l~~~~~~-~~~~~~~  541 (543)
                      .++. +|..+..+++|+.|++++|+++ .+|+.+.
T Consensus       534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  568 (968)
T PLN00113        534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG  568 (968)
T ss_pred             cccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence            9984 5888999999999999999998 6776553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.8e-43  Score=309.14  Aligned_cols=456  Identities=28%  Similarity=0.398  Sum_probs=383.5

Q ss_pred             HHHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccc
Q 009119            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (543)
Q Consensus         5 ~~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~   84 (543)
                      ++....++.++.+++++.++|.++.+             ...++.++.+++++.++|+.+.++..++.+++++|.+..++
T Consensus        64 l~nL~~l~vl~~~~n~l~~lp~aig~-------------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~  130 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLSQLPAAIGE-------------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELP  130 (565)
T ss_pred             hhcccceeEEEeccchhhhCCHHHHH-------------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecC
Confidence            34566788999999999999999977             57789999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccE
Q 009119           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (543)
Q Consensus        85 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~  164 (543)
                      +.++.+..|+.++..+|.+.++|..+.++.++..+++.+|.++.+|+..-.++.|+++++..|..+.+|..++.+.+|+.
T Consensus       131 ~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~  210 (565)
T KOG0472|consen  131 DSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLEL  210 (565)
T ss_pred             chHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHH
Confidence            99999999999999999999999999999999999999999999987777799999999999999999999999999999


Q ss_pred             EEecCCcccccchhhhcccccccEEECCCCcCCcCchhc-cCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC
Q 009119          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (543)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  243 (543)
                      |++.+|++...+.  |.++..|.++.++.|+++.+|... .+++++..||+++|++.++|..+..+++|+.+++++|.++
T Consensus       211 LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  211 LYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             HHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc
Confidence            9999999999884  999999999999999999998765 4899999999999999999999999999999999999999


Q ss_pred             CCCccccCCCCCCEEeCCCCcccccchhhhcce----ecEEEc-------cCC---CCCC------CChhhcCCCCCcee
Q 009119          244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDL-------SNN---SLSG------LPPEIGKMTTLRKL  303 (543)
Q Consensus       244 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~----L~~L~l-------~~~---~i~~------~~~~l~~~~~L~~L  303 (543)
                      .+|..++++ .|+.|.+.+|.+..+........    ++++.=       +..   .-++      .......+.+.+.|
T Consensus       289 ~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL  367 (565)
T KOG0472|consen  289 SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL  367 (565)
T ss_pred             cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence            999999999 99999999999886554433221    332211       110   0000      11112334456667


Q ss_pred             ecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCcc
Q 009119          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT  383 (543)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~  383 (543)
                      ++++-.++.++..+|..+.                                 ..-....+++.|.+.++|..+..+..+.
T Consensus       368 ~~s~~qlt~VPdEVfea~~---------------------------------~~~Vt~VnfskNqL~elPk~L~~lkelv  414 (565)
T KOG0472|consen  368 DVSDKQLTLVPDEVFEAAK---------------------------------SEIVTSVNFSKNQLCELPKRLVELKELV  414 (565)
T ss_pred             cccccccccCCHHHHHHhh---------------------------------hcceEEEecccchHhhhhhhhHHHHHHH
Confidence            7776666666554443221                                 1235788999999999998877665544


Q ss_pred             -EEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCc
Q 009119          384 -KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (543)
Q Consensus       384 -~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  462 (543)
                       .+.++++.+..+|..+..+++|+.|++++|.+.+++... +.+..|+.|+++.|++...+.. ......++.+-.++|+
T Consensus       415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~-~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM-GSLVRLQTLNLSFNRFRMLPEC-LYELQTLETLLASNNQ  492 (565)
T ss_pred             HHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhh-hhhhhhheecccccccccchHH-HhhHHHHHHHHhcccc
Confidence             467777778888888999999999999999888887664 7788899999999988877643 5666788888888899


Q ss_pred             CCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccc
Q 009119          463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       463 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~  511 (543)
                      +....+..+..+.+|+.|++.+|.+..+|..++.|++|++|+++||.+.
T Consensus       493 i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  493 IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            9998888899999999999999999999999999999999999999988

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-38  Score=292.70  Aligned_cols=380  Identities=25%  Similarity=0.332  Sum_probs=249.8

Q ss_pred             ccEEEcCccccccch-HHhcCCC--CCCEEEcCCCcCccc-chhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119           47 LQKLILAHNNIEKLK-EDLRNLP--LLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (543)
Q Consensus        47 L~~L~l~~~~~~~l~-~~~~~~~--~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  122 (543)
                      -+.|++++..+..+. +.+..+-  .-+.|++++|.+.++ +..|.++++|+.+++..|.++.+|...+-..+++.|++.
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence            566888888887663 4455443  345588899888876 446788889999999888888888777777778888888


Q ss_pred             CCCccccc-ccccCCCCCCEEEccCCcCccCCc-ccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCc
Q 009119          123 SNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (543)
Q Consensus       123 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (543)
                      +|.++++. +.+..++.|++||++.|.++.++. .|..-.++++|++++|.|+.+....|..+.+|.+|.++.|.++.+|
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp  213 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP  213 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence            88888664 567778888888888888887764 3666688999999999999888888888888888888888888887


Q ss_pred             h-hccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCCCCCCc-cccCCCCCCEEeCCCCcccccchhhhccee
Q 009119          201 E-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRL  277 (543)
Q Consensus       201 ~-~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L  277 (543)
                      . .+.++++|+.|++..|.++.+ ...|.++++|+.+.+..|.+..+-. .|..+.++++|+++.|++..+..       
T Consensus       214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-------  286 (873)
T KOG4194|consen  214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE-------  286 (873)
T ss_pred             HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-------
Confidence            6 455688888888888887755 3456666666666666666665432 45556666666666555543322       


Q ss_pred             cEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhccc
Q 009119          278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV  357 (543)
Q Consensus       278 ~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (543)
                                    .++.+++.|+.|+++.|.+..+..                                          
T Consensus       287 --------------g~lfgLt~L~~L~lS~NaI~rih~------------------------------------------  310 (873)
T KOG4194|consen  287 --------------GWLFGLTSLEQLDLSYNAIQRIHI------------------------------------------  310 (873)
T ss_pred             --------------ccccccchhhhhccchhhhheeec------------------------------------------
Confidence                          134555666666666665533311                                          


Q ss_pred             ccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (543)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~  436 (543)
                                      ....-+++|++|+++.|+++.+++ .|..+..|+.|++++|.+..+....|..+.+|+.|+|++
T Consensus       311 ----------------d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~  374 (873)
T KOG4194|consen  311 ----------------DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS  374 (873)
T ss_pred             ----------------chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence                            011124556666666666666543 355556666666666666666666666666666666666


Q ss_pred             CCCcc---cCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCC
Q 009119          437 NPLRQ---VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLS  506 (543)
Q Consensus       437 n~l~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~  506 (543)
                      |.+.-   -.+.+|.++++|+.|++-||++..+...+|.++++|++|++.+|.|.++ +.+|..+ .|++|-+.
T Consensus       375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             CeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            65542   2333455566666666666666555555556666666666666655544 2333343 55555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-38  Score=289.29  Aligned_cols=380  Identities=25%  Similarity=0.352  Sum_probs=308.7

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccchhhhcc
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~   90 (543)
                      ..+||+++.+..+......++.          .+..+.|++++|.+..+. ..|.++++|+++++.+|.++.||......
T Consensus        55 ~lldcs~~~lea~~~~~l~g~l----------p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~s  124 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFL----------PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHES  124 (873)
T ss_pred             eeeecCccccccccccccCCcC----------ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccc
Confidence            4689999998887555544433          356788999999999874 67899999999999999999999877778


Q ss_pred             CCCCEEEcCCCCCCCCC-hhhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCccCC-cccccCCCccEEEe
Q 009119           91 HMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV  167 (543)
Q Consensus        91 ~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l  167 (543)
                      .+|++|+|.+|.+.++. ..+..++.|+.||++.|.++.++ ..|.+-.++++|++++|.|+.+. ..|..+.+|-.|.+
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            88999999999999774 46788999999999999999887 56777789999999999999774 45888899999999


Q ss_pred             cCCcccccchhhhcccccccEEECCCCcCCcCc-hhccCCCcccEEEccCCccccCC-CCCcCCCCCcEEEcCCCCCCCC
Q 009119          168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL  245 (543)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~l  245 (543)
                      ++|.++.++...|..+++|+.|++..|.+..+. ..+..+++|+.|.+..|.+..+. ..|..+.++++|+++.|.+..+
T Consensus       205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            999999999999999999999999999997763 46889999999999999999764 5688999999999999999977


Q ss_pred             C-ccccCCCCCCEEeCCCCccccc--chhhhcceecEEEccCCCCCCCCh-hhcCCCCCceeecCCCCcCcccccccCCC
Q 009119          246 P-AELGKLSKLGTLDLHSNQLKEY--CVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGP  321 (543)
Q Consensus       246 ~-~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  321 (543)
                      . .++.+++.|+.|+++.|.|..+  ..+.+..+|+.|+++.|+++.++. .+..+..|++|+++.|.++.+....|   
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---  361 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---  361 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH---
Confidence            4 4889999999999999999854  444555668888888888888654 46677777888887777655543322   


Q ss_pred             cHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCcc----CCh
Q 009119          322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE----LPP  397 (543)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----l~~  397 (543)
                                                                             ..+++|++||+.+|.+.+    -..
T Consensus       362 -------------------------------------------------------~~lssL~~LdLr~N~ls~~IEDaa~  386 (873)
T KOG4194|consen  362 -------------------------------------------------------VGLSSLHKLDLRSNELSWCIEDAAV  386 (873)
T ss_pred             -------------------------------------------------------HHhhhhhhhcCcCCeEEEEEecchh
Confidence                                                                   224567777777776654    222


Q ss_pred             hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119          398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (543)
Q Consensus       398 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  460 (543)
                      .|..++.|+.|.+.+|++..+.-..|.++++|++|+|.+|.|-++..++|..+ .|++|.++.
T Consensus       387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            46667777777887777777777777777778888877777777777777777 777776654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-38  Score=305.54  Aligned_cols=478  Identities=27%  Similarity=0.334  Sum_probs=369.1

Q ss_pred             eeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccchhhhccC
Q 009119           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH   91 (543)
Q Consensus        13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~   91 (543)
                      .+|.+..+++-||.+++.+             ..+..|+++.|.+-..| +.+.+..+|+.|++++|.+..+|..+..+.
T Consensus         2 ~vd~s~~~l~~ip~~i~~~-------------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~   68 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNN-------------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLS   68 (1081)
T ss_pred             CcccccccCcccchhhccH-------------HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHH
Confidence            4688888899999988764             44889999999887765 556667779999999999999999999999


Q ss_pred             CCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCC-
Q 009119           92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-  170 (543)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~-  170 (543)
                      +|+.|+++.|.+..+|.+..+..+|+++++.+|....+|..+..+.+|++|+++.|.+..+|..+..+..++.+..++| 
T Consensus        69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~  148 (1081)
T KOG0618|consen   69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE  148 (1081)
T ss_pred             HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch
Confidence            9999999999999999889999999999999999999999999999999999999999999988888888999988888 


Q ss_pred             cccccchhhhcccccccEEECCCCcC-CcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccc
Q 009119          171 KLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL  249 (543)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l  249 (543)
                      .+.....     . ..+.+++..+.+ ..++.....+..  .+++++|.+..  .....+.+|+.+....|.+..+.   
T Consensus       149 ~~~~lg~-----~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--~dls~~~~l~~l~c~rn~ls~l~---  215 (1081)
T KOG0618|consen  149 KIQRLGQ-----T-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--LDLSNLANLEVLHCERNQLSELE---  215 (1081)
T ss_pred             hhhhhcc-----c-cchhhhhhhhhcccchhcchhhhhe--eeecccchhhh--hhhhhccchhhhhhhhcccceEE---
Confidence            2222222     1 266677777666 344444444444  58998888772  34567788888888888777442   


Q ss_pred             cCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHH
Q 009119          250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL  329 (543)
Q Consensus       250 ~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  329 (543)
                      ..-++++.|+...|.++.......+.++++++++.+.+..+|.+++.+.+|+.+++..|.+..++..++.......+...
T Consensus       216 ~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~  295 (1081)
T KOG0618|consen  216 ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA  295 (1081)
T ss_pred             ecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence            23478889999999888777666677799999999999999988899999999999999887666555443322222211


Q ss_pred             hccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhcc--CCccEEEcCCCcCccCChh-hccCCCCc
Q 009119          330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA--GEITKLDLSRNSIQELPPE-LSSCASLQ  406 (543)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~l~~~-~~~~~~L~  406 (543)
                      ...+....             .......++++|++..+.+..+|..+...  ..++.++.+.+.+...|.. =...+.|+
T Consensus       296 ~nel~yip-------------~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq  362 (1081)
T KOG0618|consen  296 YNELEYIP-------------PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ  362 (1081)
T ss_pred             hhhhhhCC-------------CcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence            11111110             01111246677777777777666644332  2356666666666665532 12345689


Q ss_pred             eeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCc
Q 009119          407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ  486 (543)
Q Consensus       407 ~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~  486 (543)
                      .|.+.+|.+++.....+.++++|+.|+|++|++..+++..+.+++.|++|++|||.+..+. .....++.|++|...+|+
T Consensus       363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQ  441 (1081)
T ss_pred             HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCc
Confidence            9999999999988888999999999999999999999999999999999999999998764 567889999999999999


Q ss_pred             cccCchhhhccCCCcEEeCCCCcccc--ccccccCCCCCCeEeCCCCc
Q 009119          487 LREAPTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNN  532 (543)
Q Consensus       487 l~~l~~~~~~~~~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~  532 (543)
                      +..+| .+..+++|+.+|++.|.++.  +|+.... ++|+.||++||.
T Consensus       442 l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  442 LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             eeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            99999 77888999999999999984  3554444 899999999996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-35  Score=286.58  Aligned_cols=461  Identities=26%  Similarity=0.348  Sum_probs=351.6

Q ss_pred             cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhcc
Q 009119           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (543)
Q Consensus        11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~   90 (543)
                      +..|+++.|.+-+.|.+..++            +.+|+.|+++.+.+..+|..+..+.+|+.|+++.|.+...|....++
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~------------~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~   90 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEK------------RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM   90 (1081)
T ss_pred             HHhhhccccccccCchHHhhh------------eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence            677888888888888666665            55688888888888888888888888888888888888888888888


Q ss_pred             CCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCC-cCccC-----------------
Q 009119           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-CITSL-----------------  152 (543)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~i-----------------  152 (543)
                      .+|++++|.+|.+..+|..+..+.+|+.|++++|.+..+|..+..+..++.+..++| .+..+                 
T Consensus        91 ~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~  170 (1081)
T KOG0618|consen   91 RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGG  170 (1081)
T ss_pred             hcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhccc
Confidence            888888888888888888888888888888888888888877777777777777766 11112                 


Q ss_pred             --CcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCC
Q 009119          153 --PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC  230 (543)
Q Consensus       153 --~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  230 (543)
                        +.....+.+  .+++.+|.+...+   +..+..|+.+....|++..+.   ...++++.|+.+.|.+..+. ......
T Consensus       171 ~~~~~i~~l~~--~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~-~~p~p~  241 (1081)
T KOG0618|consen  171 SFLIDIYNLTH--QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLD-VHPVPL  241 (1081)
T ss_pred             chhcchhhhhe--eeecccchhhhhh---hhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeec-cccccc
Confidence              122222222  3677777665222   556666777777776665443   23467888888888777432 223456


Q ss_pred             CCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcce-ecEEEccCCCCCCCChhhcCCCCCceeecCCCC
Q 009119          231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP  309 (543)
Q Consensus       231 ~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~  309 (543)
                      +++.++++.+.+..+|.|+..+.+|+.++...|++..++...+... |+.+++..|.+..+|+..+..+.|++|++..|.
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            8999999999999999999999999999999999988887776654 999999999999999999999999999999999


Q ss_pred             cCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhh-hccCCccEEEcC
Q 009119          310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLS  388 (543)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~  388 (543)
                      +..++...+...                                  ...+..+..+.+.+..++..- ...+.|+.|.+.
T Consensus       322 L~~lp~~~l~v~----------------------------------~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  322 LPSLPDNFLAVL----------------------------------NASLNTLNVSSNKLSTLPSYEENNHAALQELYLA  367 (1081)
T ss_pred             ccccchHHHhhh----------------------------------hHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence            988775332211                                  122334444444444444222 225678899999


Q ss_pred             CCcCcc--CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCC
Q 009119          389 RNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP  466 (543)
Q Consensus       389 ~~~l~~--l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  466 (543)
                      +|.+++  +| .+.++++|+.|++++|++..++...+.++..|++|+|+||+++.++ .....+++|++|...+|++...
T Consensus       368 nN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~f  445 (1081)
T KOG0618|consen  368 NNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSF  445 (1081)
T ss_pred             cCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeec
Confidence            999988  44 5788899999999999999999999999999999999999999888 4488899999999999988664


Q ss_pred             CCCCCCCCCcCceeecCCCccc--cCchhhhccCCCcEEeCCCCccccc-cccccCCCCCCeEeCCCC
Q 009119          467 ENPPFSSLPHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDN  531 (543)
Q Consensus       467 ~~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~  531 (543)
                      -  .+..++.|+.++++.|+++  .+++.... ++|++||++||....+ -+.|..+..+...++.-+
T Consensus       446 P--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  446 P--ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             h--hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            2  5788999999999999988  44544443 8999999999975544 345666666666666655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=4.3e-35  Score=273.20  Aligned_cols=366  Identities=25%  Similarity=0.348  Sum_probs=285.6

Q ss_pred             cCCccEEecCCCCcc--cccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEE
Q 009119          113 ATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI  190 (543)
Q Consensus       113 ~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  190 (543)
                      ++-.+-+++++|.++  .+|.....+.+++.|.+....+..+|+.++.+.+|++|.++.|.+.                 
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----------------   68 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----------------   68 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----------------
Confidence            344455566666655  4555555555555555555555555555555555555555555444                 


Q ss_pred             CCCCcCCcCchhccCCCcccEEEccCCccc--cCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccccc
Q 009119          191 ASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY  268 (543)
Q Consensus       191 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~  268 (543)
                             .+-..++.++.|+.+.++.|++.  ++|..+..+..|+.|++++|.++.+|..+...+++-+|++++|+|..+
T Consensus        69 -------~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI  141 (1255)
T KOG0444|consen   69 -------SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI  141 (1255)
T ss_pred             -------hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC
Confidence                   44445556666667777666555  667777777777777777777777777788888888888888888888


Q ss_pred             chhhhcce--ecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchh
Q 009119          269 CVEACQLR--LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE  346 (543)
Q Consensus       269 ~~~~~~~~--L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (543)
                      |...+..-  |-.||+++|++..+|+-...+.+|++|.+++|++..+....+..                          
T Consensus       142 Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs--------------------------  195 (1255)
T KOG0444|consen  142 PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPS--------------------------  195 (1255)
T ss_pred             CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCcc--------------------------
Confidence            77766543  78888888888888888889999999999999875433222111                          


Q ss_pred             hHHHhhhhcccccceeeeCCCCCC--CCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhh
Q 009119          347 DLITMATRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT  424 (543)
Q Consensus       347 ~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~  424 (543)
                               ..++.++.+++.+-+  .+|..+..+.+|..+|++.|++..+|+++..+++|+.|++++|+|+++.... +
T Consensus       196 ---------mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~-~  265 (1255)
T KOG0444|consen  196 ---------MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE-G  265 (1255)
T ss_pred             ---------chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH-H
Confidence                     135667777766444  7899999999999999999999999999999999999999999999876654 6


Q ss_pred             CCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCC-CCCCCCCCCcCceeecCCCccccCchhhhccCCCcEE
Q 009119          425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP-ENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL  503 (543)
Q Consensus       425 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L  503 (543)
                      .-.+|+.|+++.|+++.+++. +.++++|+.|.+.+|.++.. ++..++.+.+|+.+..++|.+.-.|+++..|..|+.|
T Consensus       266 ~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  266 EWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKL  344 (1255)
T ss_pred             HHhhhhhhccccchhccchHH-HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHh
Confidence            678999999999999988865 88999999999999998754 5677899999999999999999999999999999999


Q ss_pred             eCCCCccccccccccCCCCCCeEeCCCCcCCcCCCC
Q 009119          504 DLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE  539 (543)
Q Consensus       504 ~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~  539 (543)
                      .|+.|++..+|++++-++-|+.||+..|+=-..||.
T Consensus       345 ~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  345 KLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             cccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence            999999999999999999999999999975555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=7.2e-34  Score=265.11  Aligned_cols=360  Identities=29%  Similarity=0.428  Sum_probs=277.2

Q ss_pred             HhhcCeeecCCCccc--ccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch
Q 009119            8 ARTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA   85 (543)
Q Consensus         8 ~~~~~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~   85 (543)
                      .+.++-+|+++|.+.  .+|.++-+             +++++-|.|...++.++|+-++.+.+|++|.+++|++.++-.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG   72 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG   72 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh
Confidence            345677888888877  78877765             678888888888888888888888888888888888887777


Q ss_pred             hhhccCCCCEEEcCCCCCC--CCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcc-cccCCCc
Q 009119           86 AIGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKM  162 (543)
Q Consensus        86 ~~~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~~~L  162 (543)
                      .++.++.|+.+.+..|++.  .+|..+..+..|+.|+++.|+++..|..+..-+++-.|++++|.|..||.. +.++..|
T Consensus        73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL  152 (1255)
T KOG0444|consen   73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL  152 (1255)
T ss_pred             hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence            7888888888888888877  678888888888888888888888888888888888888888888888765 5567788


Q ss_pred             cEEEecCCcccccchhhhcccccccEEECCCCcCCcCc-hhccCCCcccEEEccCCccc--cCCCCCcCCCCCcEEEcCC
Q 009119          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGN  239 (543)
Q Consensus       163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~  239 (543)
                      -.|+++.|++..++.. ...+.+|++|++++|++..+. .++..+.+|+.|.+++.+-+  .+|..+..+.+|..++++.
T Consensus       153 LfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  153 LFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             hhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence            8888888888877776 777788888888888875432 24456777888888887544  7788888888888889988


Q ss_pred             CCCCCCCccccCCCCCCEEeCCCCcccccchhhhc-ceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCccccccc
Q 009119          240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV  318 (543)
Q Consensus       240 ~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  318 (543)
                      |.+..+|+.+.++++|+.|++++|.++.+...... .++++|+++.|+++.+|.++.++++|+.|.+..|++.       
T Consensus       232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~-------  304 (1255)
T KOG0444|consen  232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT-------  304 (1255)
T ss_pred             cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc-------
Confidence            88888888888888999999999888876655433 3488888888888888888888888888888777652       


Q ss_pred             CCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChh
Q 009119          319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE  398 (543)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~  398 (543)
                                                                        +..+|+.++.+..|+++...+|.+.-+|+.
T Consensus       305 --------------------------------------------------FeGiPSGIGKL~~Levf~aanN~LElVPEg  334 (1255)
T KOG0444|consen  305 --------------------------------------------------FEGIPSGIGKLIQLEVFHAANNKLELVPEG  334 (1255)
T ss_pred             --------------------------------------------------ccCCccchhhhhhhHHHHhhccccccCchh
Confidence                                                              235556666666666666666666666666


Q ss_pred             hccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCC
Q 009119          399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL  439 (543)
Q Consensus       399 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l  439 (543)
                      +..|+.|+.|.++.|.+..++..+ --++.|+.|++..|+-
T Consensus       335 lcRC~kL~kL~L~~NrLiTLPeaI-HlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  335 LCRCVKLQKLKLDHNRLITLPEAI-HLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhhhHHHHHhcccccceeechhhh-hhcCCcceeeccCCcC
Confidence            666666666666666655554432 4456666666666653

>PLN03210 Resistant to P

Probab=99.90  E-value=5.7e-22  Score=215.74  Aligned_cols=168  Identities=24%  Similarity=0.287  Sum_probs=93.7

Q ss_pred             ccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccC--------ChhhccCCCCceeecccCcCCCCCHHHhhCCCCC
Q 009119          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL--------PPELSSCASLQTLILSRNKIKDWPDAILTSLSSL  429 (543)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l--------~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L  429 (543)
                      +++.+++.++.+..+|..+ .+++|++|.+.++....+        +.....+++|+.|++++|......+..+.++++|
T Consensus       726 nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L  804 (1153)
T PLN03210        726 NISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL  804 (1153)
T ss_pred             CcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC
Confidence            3444555555444444332 344555555554322111        1112234566777777664443334445667777


Q ss_pred             CEEEcCCCC-CcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCC
Q 009119          430 SCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN  508 (543)
Q Consensus       430 ~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~  508 (543)
                      +.|++++|. +..++.. . .+++|+.|++++|......+   ...++|++|++++|.++.+|..+..+++|+.|++++|
T Consensus       805 ~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p---~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        805 EHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFP---DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             CEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccc---ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCC
Confidence            777776654 3334432 2 56677777777654322111   1235677777777777777777777777777777775


Q ss_pred             c-cccccccccCCCCCCeEeCCCC
Q 009119          509 S-LQSIPEGFKNLTSLTELDLSDN  531 (543)
Q Consensus       509 ~-l~~l~~~l~~~~~L~~L~l~~~  531 (543)
                      . ++.+|..+..+++|+.+++++|
T Consensus       880 ~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        880 NNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCcCccCcccccccCCCeeecCCC
Confidence            3 6666666666777777777776

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=2.3e-25  Score=197.34  Aligned_cols=410  Identities=21%  Similarity=0.265  Sum_probs=250.3

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhhhc
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~   89 (543)
                      ..++|++.+++++|.++.               +.-..++|..|+|+.|| .+|+.+++|+.|||++|.|..| |++|..
T Consensus        49 ~~VdCr~~GL~eVP~~LP---------------~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G  113 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLP---------------PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG  113 (498)
T ss_pred             ceEEccCCCcccCcccCC---------------CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence            368999999999999995               45889999999999998 6899999999999999999977 779999


Q ss_pred             cCCCCEEEcCC-CCCCCCCh-hhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCccCCc-ccccCCCccEE
Q 009119           90 LHMLKSLDVSF-NSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL  165 (543)
Q Consensus        90 ~~~L~~L~l~~-~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L  165 (543)
                      ++.|..|.+.+ |+|+.+|. .|+++..++-|.+.-|++.-++ ..+..++++..|.+.+|.+..++. .|..+..++.+
T Consensus       114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL  193 (498)
T ss_pred             hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence            99998888776 88999986 5889999999999999888654 678889999999999999998876 67888888888


Q ss_pred             EecCCccc------ccchh------hhcccccccEEECCCCcCCcCchh-c-cCCCcccEEEccCC-ccccCC-CCCcCC
Q 009119          166 DVEGNKLT------VLSNN------LIASWTMLTELIASKNLLNGMPET-I-GSLSRLIRLDLHQN-RILSIP-SSISGC  229 (543)
Q Consensus       166 ~l~~~~i~------~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~-l-~~~~~L~~L~l~~~-~~~~~~-~~~~~~  229 (543)
                      .+..|.+.      +....      .+++........+....+..++.. + ..+..+.+=-.+.+ ....-| ..|..+
T Consensus       194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L  273 (498)
T KOG4237|consen  194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL  273 (498)
T ss_pred             hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence            87766522      11110      011111111111111111111110 0 00011110011111 111222 236677


Q ss_pred             CCCcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccchhhhcce--ecEEEccCCCCCC-CChhhcCCCCCceeec
Q 009119          230 CSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLSNNSLSG-LPPEIGKMTTLRKLLL  305 (543)
Q Consensus       230 ~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l  305 (543)
                      ++|++|++++|.++.+ ..+|.+...+++|.+..|++..+....+..-  |++|++.+|+|+. .|.+|.....|.+|.+
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence            7778888888777765 3467777778888888887777666665533  7778888887777 3555777777888888


Q ss_pred             CCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCC----hhh-----
Q 009119          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP----SEI-----  376 (543)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~----~~~-----  376 (543)
                      -.|++-.-      ......-.+++..- ..+...            ...+..++.+.+++..+....    ++.     
T Consensus       354 ~~Np~~Cn------C~l~wl~~Wlr~~~-~~~~~~------------Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s  414 (498)
T KOG4237|consen  354 LSNPFNCN------CRLAWLGEWLRKKS-VVGNPR------------CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTS  414 (498)
T ss_pred             ccCcccCc------cchHHHHHHHhhCC-CCCCCC------------CCCCchhccccchhccccccccCCccccCCCCC
Confidence            77765210      01111122222211 000000            011223444444444333211    100     


Q ss_pred             ----hccCCccE-EEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCC
Q 009119          377 ----WEAGEITK-LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (543)
Q Consensus       377 ----~~~~~L~~-L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~  451 (543)
                          ..++.+.. ...++..++.+|..+.  ...+.+++.+|.++.++.+   .+.+| .+++++|++..+....|.++.
T Consensus       415 ~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~~Lsn~tf~n~t  488 (498)
T KOG4237|consen  415 SPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRISSLSNYTFSNMT  488 (498)
T ss_pred             CCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhcccCHH---HHhhh-hcccccCceehhhcccccchh
Confidence                01122221 2223333444443221  2456667777777766665   34555 677777777666666667777


Q ss_pred             CccEEEccCC
Q 009119          452 MLQILDLSYN  461 (543)
Q Consensus       452 ~L~~L~l~~n  461 (543)
                      +|.+|.+++|
T Consensus       489 ql~tlilsyn  498 (498)
T KOG4237|consen  489 QLSTLILSYN  498 (498)
T ss_pred             hhheeEEecC
Confidence            7777666654

>PLN03210 Resistant to P

Probab=99.89  E-value=1.8e-21  Score=211.82  Aligned_cols=322  Identities=24%  Similarity=0.285  Sum_probs=188.5

Q ss_pred             ccCccEEEcCccccc-------cchHHhcCCC-CCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCC
Q 009119           44 AVDLQKLILAHNNIE-------KLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA  115 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~-------~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~  115 (543)
                      +++|+.|.+..+...       .+|..|..++ +|+.|.+.++.+..+|..| ...+|+.|++.++.+..++..+..+++
T Consensus       557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~  635 (1153)
T PLN03210        557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTG  635 (1153)
T ss_pred             CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCC
Confidence            555666666544211       3455555543 4777777777666666655 356677777777766666666666777


Q ss_pred             ccEEecCCCC-cccccccccCCCCCCEEEccCCc-CccCCcccccCCCccEEEecCC-cccccchhhhcccccccEEECC
Q 009119          116 LVKFDCSSNQ-LKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIAS  192 (543)
Q Consensus       116 L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~i~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~  192 (543)
                      |+.++++++. +..+| .+..+++|++|++++|. +..+|..+..+++|+.|++++| .+..++..  ..+++|+.|+++
T Consensus       636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Ls  712 (1153)
T PLN03210        636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLS  712 (1153)
T ss_pred             CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCC
Confidence            7777776654 34554 35566677777776653 3466666667777777777665 34444432  145667777777


Q ss_pred             CCcC-CcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCc--------cccCCCCCCEEeCCCC
Q 009119          193 KNLL-NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA--------ELGKLSKLGTLDLHSN  263 (543)
Q Consensus       193 ~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~--------~l~~~~~L~~L~l~~n  263 (543)
                      +|.. ..+|.   ...+|+.|+++++.+..+|..+ .+++|++|.+.++....++.        .....++|+.|++++|
T Consensus       713 gc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n  788 (1153)
T PLN03210        713 GCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI  788 (1153)
T ss_pred             CCCCcccccc---ccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence            6643 33332   1345667777777766666544 45666666665543222211        1122356666666665


Q ss_pred             cc-cccchhhhc-ceecEEEccCC-CCCCCChhhcCCCCCceeecCCCCc-CcccccccCCCcHHHHHHHhccCCCCccc
Q 009119          264 QL-KEYCVEACQ-LRLSVLDLSNN-SLSGLPPEIGKMTTLRKLLLTGNPL-RTLRSSLVNGPTPALLKYLRSRLPENEDS  339 (543)
Q Consensus       264 ~l-~~~~~~~~~-~~L~~L~l~~~-~i~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (543)
                      .. ..++..... .+|+.|++++| .+..+|..+ .+++|+.|++++|.. ..++                         
T Consensus       789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p-------------------------  842 (1153)
T PLN03210        789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP-------------------------  842 (1153)
T ss_pred             CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc-------------------------
Confidence            32 233333222 23666666665 334455443 566777777776532 1110                         


Q ss_pred             ccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCc-CccCChhhccCCCCceeecccC
Q 009119          340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPPELSSCASLQTLILSRN  413 (543)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~  413 (543)
                                    ....+++.|+++++.+..+|..+..+++|+.|++++|. ++.+|.....+++|+.+++++|
T Consensus       843 --------------~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        843 --------------DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             --------------ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence                          01245677777777777777777777778888887753 5666666667777777777776

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.89  E-value=4.2e-22  Score=200.90  Aligned_cols=258  Identities=30%  Similarity=0.374  Sum_probs=217.9

Q ss_pred             cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhcc
Q 009119           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (543)
Q Consensus        11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~   90 (543)
                      -..||++.++++++|..+.               ++|+.|++++|.++.+|.   ..++|++|++++|.++.+|..   .
T Consensus       203 ~~~LdLs~~~LtsLP~~l~---------------~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p  261 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---P  261 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh---------------cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---c
Confidence            4579999999999998874               359999999999999875   358999999999999988753   4


Q ss_pred             CCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCC
Q 009119           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (543)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~  170 (543)
                      ++|+.|++++|.+..+|..   .++|+.|++++|+++.+|..   .++|+.|++++|.+..+|...   .+|+.|++++|
T Consensus       262 ~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N  332 (788)
T PRK15387        262 PGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNN  332 (788)
T ss_pred             cccceeeccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccC
Confidence            6899999999999888764   36788999999999988853   468999999999999887532   46888999999


Q ss_pred             cccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCcccc
Q 009119          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG  250 (543)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~  250 (543)
                      .+..++.    ...+|++|++++|.+..+|..   ..+|+.|++++|.+..+|..   ..+|+.|++++|.++.+|..  
T Consensus       333 ~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l--  400 (788)
T PRK15387        333 QLTSLPT----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL--  400 (788)
T ss_pred             ccccccc----cccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc--
Confidence            9887663    125799999999999988853   35788999999999988764   35799999999999988764  


Q ss_pred             CCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcc
Q 009119          251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL  313 (543)
Q Consensus       251 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~  313 (543)
                       .++|+.|++++|.+..++..  ...|+.|++++|.++.+|..+.++++++.+++++|++...
T Consensus       401 -~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        401 -PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             -ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence             36899999999999987753  3468999999999999999999999999999999998643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=1.4e-21  Score=197.28  Aligned_cols=259  Identities=24%  Similarity=0.260  Sum_probs=188.9

Q ss_pred             ccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCC
Q 009119          184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (543)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n  263 (543)
                      ..-..|+++++.++.+|..+.  ++|+.|++.+|.++.+|..   .++|++|++++|.++.+|..   .++|++|++++|
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence            346678999998888887664  4789999999988888753   57899999999988888753   468888999999


Q ss_pred             cccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCccccccc
Q 009119          264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST  343 (543)
Q Consensus       264 ~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (543)
                      .+..++.  ....|+.|++++|.++.+|..   .++|+.|++++|.+..++.                            
T Consensus       273 ~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~----------------------------  319 (788)
T PRK15387        273 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----------------------------  319 (788)
T ss_pred             chhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCC----------------------------
Confidence            8887665  234588889999888887653   3678888888888765542                            


Q ss_pred             chhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHh
Q 009119          344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIL  423 (543)
Q Consensus       344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l  423 (543)
                                 .+..++.|++.+|.++.+|..   ..+|+.|++++|.++.+|..   .++|+.|++++|.+..++.   
T Consensus       320 -----------lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~---  379 (788)
T PRK15387        320 -----------LPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA---  379 (788)
T ss_pred             -----------CcccccccccccCcccccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCcc---
Confidence                       113456777777777776642   24678888888888877742   3567778888887776553   


Q ss_pred             hCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEE
Q 009119          424 TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL  503 (543)
Q Consensus       424 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L  503 (543)
                       ...+|+.|++++|+++.++..    .++|+.|++++|.+..+ +.   ...+|+.|++++|+++.+|..+..+++|+.|
T Consensus       380 -l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssI-P~---l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~L  450 (788)
T PRK15387        380 -LPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTV  450 (788)
T ss_pred             -cccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCC-Cc---chhhhhhhhhccCcccccChHHhhccCCCeE
Confidence             235678888888887766532    35778888888877653 21   2346777888888888888777777888888


Q ss_pred             eCCCCcccc
Q 009119          504 DLSQNSLQS  512 (543)
Q Consensus       504 ~l~~~~l~~  512 (543)
                      ++++|+++.
T Consensus       451 dLs~N~Ls~  459 (788)
T PRK15387        451 NLEGNPLSE  459 (788)
T ss_pred             ECCCCCCCc
Confidence            888887763

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=2.4e-24  Score=190.96  Aligned_cols=388  Identities=23%  Similarity=0.302  Sum_probs=261.5

Q ss_pred             hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCC-CcCcccch-h
Q 009119           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSH-NKLSELPA-A   86 (543)
Q Consensus        10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~-~~l~~~~~-~   86 (543)
                      ..+++++..|+|+.||...|+.            +++||.|+||.|.|+.| |.+|++++.+..|.+.+ |+|+++|. +
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~------------l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKT------------LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             cceEEEeccCCcccCChhhccc------------hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            4468999999999999999887            56699999999999988 68999999998888777 89999987 8


Q ss_pred             hhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCCcCc---cC---------
Q 009119           87 IGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SL---------  152 (543)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~i---------  152 (543)
                      |..+..|+.|.+.-|.+.-+ .+++..++++..|.+.+|.+..++. .+..+..++++.+..+.+-   .+         
T Consensus       136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~  215 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM  215 (498)
T ss_pred             hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence            99999999999998888844 5678899999999999999998885 7888889999988887643   11         


Q ss_pred             -CcccccCCCccEEEecCCcccccchhhhccc-ccccE-EECCCCcCCcCch-hccCCCcccEEEccCCccccCC-CCCc
Q 009119          153 -PEDLADCSKMSKLDVEGNKLTVLSNNLIASW-TMLTE-LIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSIS  227 (543)
Q Consensus       153 -~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~-~~L~~-L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~-~~~~  227 (543)
                       +..++......-..+.+.++..++...|... ..+.+ +.-..+.....|. .+..+++|+.|++++|+++.+. .+|.
T Consensus       216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe  295 (498)
T KOG4237|consen  216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE  295 (498)
T ss_pred             chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence             1222222233333344444555544433322 11111 1112222233333 4778888888888888888664 5678


Q ss_pred             CCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcce--ecEEEccCCCCCC------CChhhcCCC
Q 009119          228 GCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLSNNSLSG------LPPEIGKMT  298 (543)
Q Consensus       228 ~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~L~l~~~~i~~------~~~~l~~~~  298 (543)
                      +...+++|++..|++..+. ..|.++..|++|++.+|+|+.+....|..-  |.+|++-.|.+..      +..++.+-.
T Consensus       296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~  375 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS  375 (498)
T ss_pred             chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence            8888888888888888553 367788888888888888888877777654  8888887764433      223332211


Q ss_pred             -----------CCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcc-cccccchhhHHHhhhhcccccceeeeCC
Q 009119          299 -----------TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED-SEASTTKEDLITMATRLSVTSKELSLEG  366 (543)
Q Consensus       299 -----------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~  366 (543)
                                 .++.+.++...+..+.-     ..+.        ...... ......+          .+--++...++
T Consensus       376 ~~~~~~Cq~p~~~~~~~~~dv~~~~~~c-----~~~e--------e~~~~~s~~cP~~c----------~c~~tVvRcSn  432 (498)
T KOG4237|consen  376 VVGNPRCQSPGFVRQIPISDVAFGDFRC-----GGPE--------ELGCLTSSPCPPPC----------TCLDTVVRCSN  432 (498)
T ss_pred             CCCCCCCCCCchhccccchhcccccccc-----CCcc--------ccCCCCCCCCCCCc----------chhhhhHhhcc
Confidence                       12233333322221110     0000        000000 0000000          01113344455


Q ss_pred             CCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCC
Q 009119          367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (543)
Q Consensus       367 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n  437 (543)
                      ...+.+|..+  .....++.+++|.++.+|..  .+.++ .+++++|++.......|.++..|..|.|++|
T Consensus       433 k~lk~lp~~i--P~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  433 KLLKLLPRGI--PVDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cchhhcCCCC--CchhHHHhcccchhcccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            5555554433  23457789999999999976  56778 9999999999998889999999999999876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.84  E-value=1.4e-20  Score=191.30  Aligned_cols=245  Identities=27%  Similarity=0.433  Sum_probs=137.1

Q ss_pred             hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhc
Q 009119           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE   89 (543)
Q Consensus        10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~   89 (543)
                      +.+.|++++.+++++|..+.               +.++.|++++|.+..+|..+.  ++|+.|++++|.+..+|..+. 
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip---------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~-  240 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP---------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP-  240 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc---------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh-
Confidence            34567777777777776653               347777777777777765543  467777777777777765443 


Q ss_pred             cCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecC
Q 009119           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG  169 (543)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~  169 (543)
                       .+|+.|++++|.+..+|..+.  .+|+.|++++|.+..+|..+.  .+|++|++++|.++.+|..+.  ++|+.|++++
T Consensus       241 -~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~  313 (754)
T PRK15370        241 -DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS  313 (754)
T ss_pred             -ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC
Confidence             357777777777776666543  467777777777776665443  466777777766666554332  3455555555


Q ss_pred             CcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccc
Q 009119          170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL  249 (543)
Q Consensus       170 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l  249 (543)
                      |.+..++...   .++|++|++++|.+..+|..+.                         ++|+.|++++|.+..+|..+
T Consensus       314 N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP~~l~-------------------------~sL~~L~Ls~N~L~~LP~~l  365 (754)
T PRK15370        314 NSLTALPETL---PPGLKTLEAGENALTSLPASLP-------------------------PELQVLDVSKNQITVLPETL  365 (754)
T ss_pred             CccccCCccc---cccceeccccCCccccCChhhc-------------------------CcccEEECCCCCCCcCChhh
Confidence            5555443211   1344555555555444443322                         34444555554444444333


Q ss_pred             cCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhc----CCCCCceeecCCCCc
Q 009119          250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG----KMTTLRKLLLTGNPL  310 (543)
Q Consensus       250 ~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~----~~~~L~~L~l~~~~~  310 (543)
                        .++|++|++++|.+..++... ...|+.|++++|++..+|..+.    .++.+..+++.+|++
T Consensus       366 --p~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        366 --PPTITTLDVSRNALTNLPENL-PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             --cCCcCEEECCCCcCCCCCHhH-HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence              134555555555555444332 1235555555555555443322    234555566665554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=1.4e-19  Score=184.19  Aligned_cols=245  Identities=24%  Similarity=0.333  Sum_probs=124.9

Q ss_pred             ccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCC
Q 009119          209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS  288 (543)
Q Consensus       209 L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~  288 (543)
                      ...|+++++.+..+|..+  .+.++.|++++|.++.+|..+.  ++|++|++++|.++.++... ...|+.|++++|.+.
T Consensus       180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~  254 (754)
T PRK15370        180 KTELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRIT  254 (754)
T ss_pred             ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-hccccEEECcCCccC
Confidence            445555555555555433  2345555555555555554332  35666666666555554322 224566666666665


Q ss_pred             CCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCC
Q 009119          289 GLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN  368 (543)
Q Consensus       289 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  368 (543)
                      .+|..+.  .+|+.|++++|.+..++...                                      +.+++.|++++|.
T Consensus       255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--------------------------------------~~sL~~L~Ls~N~  294 (754)
T PRK15370        255 ELPERLP--SALQSLDLFHNKISCLPENL--------------------------------------PEELRYLSVYDNS  294 (754)
T ss_pred             cCChhHh--CCCCEEECcCCccCcccccc--------------------------------------CCCCcEEECCCCc
Confidence            5555443  35666666666554332110                                      1234444555544


Q ss_pred             CCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccC
Q 009119          369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK  448 (543)
Q Consensus       369 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~  448 (543)
                      ++.+|..+.  ++|+.|++++|.++.+|..+  .++|+.|++++|.++.++...   .++|+.|++++|+++.++.. + 
T Consensus       295 Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~L~~LP~~-l-  365 (754)
T PRK15370        295 IRTLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPASL---PPELQVLDVSKNQITVLPET-L-  365 (754)
T ss_pred             cccCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCccccCChhh---cCcccEEECCCCCCCcCChh-h-
Confidence            444443221  34566666666666655432  245666666666666554321   25666666666666554432 2 


Q ss_pred             CCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhc----cCCCcEEeCCCCccc
Q 009119          449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR----LQQLRILDLSQNSLQ  511 (543)
Q Consensus       449 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~----~~~L~~L~l~~~~l~  511 (543)
                       .++|++|++++|.+..+.. .+  .++|+.|++++|+++.+|..+..    ++.+..|++.+|.+.
T Consensus       366 -p~~L~~LdLs~N~Lt~LP~-~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        366 -PPTITTLDVSRNALTNLPE-NL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -cCCcCEEECCCCcCCCCCH-hH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             2456666666665543311 11  12455566666666555443322    355556666665554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=4.5e-20  Score=144.93  Aligned_cols=166  Identities=35%  Similarity=0.608  Sum_probs=149.2

Q ss_pred             hhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCcc
Q 009119          375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ  454 (543)
Q Consensus       375 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  454 (543)
                      .++.+..++.|.+++|.++.+|..+..+.+|+.|++++|++++.+.. ++.+++|+.|++.-|++...+. +|+.+|.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lpr-gfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPR-GFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCcc-ccCCCchhh
Confidence            34556788899999999999998899999999999999999998876 4889999999999998876664 499999999


Q ss_pred             EEEccCCcCCC-CCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcC
Q 009119          455 ILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI  533 (543)
Q Consensus       455 ~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~  533 (543)
                      .||+.+|.+.. ..+..|..++.|+-|++++|.+..+|..+..+++|+.|.+.+|.+-.+|..++.++.|++|+|.||++
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            99999998864 34666888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCcCC
Q 009119          534 SALPPELVS  542 (543)
Q Consensus       534 ~~~~~~~~~  542 (543)
                      +.+|||+..
T Consensus       186 ~vlppel~~  194 (264)
T KOG0617|consen  186 TVLPPELAN  194 (264)
T ss_pred             eecChhhhh
Confidence            999999753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=2e-19  Score=141.38  Aligned_cols=156  Identities=30%  Similarity=0.455  Sum_probs=83.5

Q ss_pred             ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (543)
                      ++.+..|.+|+|.++.+|..++.+.+|+.|++.+|++..+|..++.+++|++|+++-|++..+|..|+.++.|+.|++.+
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCcc--cccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCc
Q 009119          124 NQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (543)
Q Consensus       124 ~~~~--~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (543)
                      |.+.  .+|..|..+..|+.|++++|.++.+|...+++++|+.|.+.+|.+-..+.. ++.+..|++|.+.+|.++.+|
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeeecC
Confidence            5555  445555555555555555555555555555555555555555444333322 333344444444444443333

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=3.8e-17  Score=155.28  Aligned_cols=177  Identities=23%  Similarity=0.270  Sum_probs=126.1

Q ss_pred             cccceeeeCCCCCCC-----CChhhhcc-CCccEEEcCCCcCcc-----CChhhccCCCCceeecccCcCCCCCH----H
Q 009119          357 VTSKELSLEGMNLSA-----IPSEIWEA-GEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPD----A  421 (543)
Q Consensus       357 ~~l~~l~l~~~~~~~-----~~~~~~~~-~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~i~~~~~----~  421 (543)
                      +.++.+++++|.+..     +...+..+ ++|+++++++|.++.     ++..+..+++|++|++++|.+++...    .
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            346777777766552     22334455 788999999998873     44556777889999999998885322    2


Q ss_pred             HhhCCCCCCEEEcCCCCCcccCC----CccCCCCCccEEEccCCcCCCCCCCCC-----CCCCcCceeecCCCccc----
Q 009119          422 ILTSLSSLSCLKLDNNPLRQVPS----DGFKDIPMLQILDLSYNIASLPENPPF-----SSLPHLQELYLRRMQLR----  488 (543)
Q Consensus       422 ~l~~~~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~l~----  488 (543)
                      .+..+++|++|++++|.+.+...    ..+..+++|++|++++|.+.+.....+     ...+.|++|++++|.++    
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~  267 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA  267 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence            34566799999999998875332    235678899999999998775322111     13578999999999886    


Q ss_pred             -cCchhhhccCCCcEEeCCCCcccc-----ccccccCC-CCCCeEeCCCCcC
Q 009119          489 -EAPTDILRLQQLRILDLSQNSLQS-----IPEGFKNL-TSLTELDLSDNNI  533 (543)
Q Consensus       489 -~l~~~~~~~~~L~~L~l~~~~l~~-----l~~~l~~~-~~L~~L~l~~~~~  533 (543)
                       .+...+..+++|+.+++++|.+..     +.+.+... +.|+++++.++++
T Consensus       268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         268 KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence             344556667899999999999873     23445555 7999999998875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.64  E-value=3e-16  Score=149.09  Aligned_cols=245  Identities=27%  Similarity=0.327  Sum_probs=135.3

Q ss_pred             EEEcCccccc--cchHHhcCCCCCCEEEcCCCcCc-----ccchhhhccCCCCEEEcCCCCCCC-------CChhhcccC
Q 009119           49 KLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMK-------IPDEIGSAT  114 (543)
Q Consensus        49 ~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~-------l~~~~~~~~  114 (543)
                      .|+|.++.+.  .....+..+.+|+.|+++++.+.     .++..+...+.|++++++++.+..       ++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4566666665  34456777788999999998874     355566777888999988876652       223456677


Q ss_pred             CccEEecCCCCcc-cccccccCC---CCCCEEEccCCcCcc-----CCcccccC-CCccEEEecCCcccccc----hhhh
Q 009119          115 ALVKFDCSSNQLK-ELPSSLGRC---LNLSDFKASNNCITS-----LPEDLADC-SKMSKLDVEGNKLTVLS----NNLI  180 (543)
Q Consensus       115 ~L~~L~l~~~~~~-~~~~~~~~~---~~L~~L~l~~~~~~~-----i~~~~~~~-~~L~~L~l~~~~i~~~~----~~~~  180 (543)
                      +|+.|++++|.+. ..+..+..+   ++|++|++++|.+..     +...+..+ ++|+.|++++|.+....    ...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            8888888887776 222222222   347777777776652     22334444 66666666666655211    1123


Q ss_pred             cccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC-----CCCccccCCCCC
Q 009119          181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKL  255 (543)
Q Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-----~l~~~l~~~~~L  255 (543)
                      ..+..|++|++++|.+.....                  ..++..+..+++|++|++++|.+.     .++..+..+++|
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L  223 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGI------------------RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL  223 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHH------------------HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence            333445555555544431000                  011112223344555555554443     122334455666


Q ss_pred             CEEeCCCCcccccchhh----h---cceecEEEccCCCCCC-----CChhhcCCCCCceeecCCCCcC
Q 009119          256 GTLDLHSNQLKEYCVEA----C---QLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLR  311 (543)
Q Consensus       256 ~~L~l~~n~l~~~~~~~----~---~~~L~~L~l~~~~i~~-----~~~~l~~~~~L~~L~l~~~~~~  311 (543)
                      ++|++++|.+++.....    .   ...|+++++++|.+++     +...+..+++|+.+++++|.+.
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            66666666655321111    1   1346666666666652     3334556677777777777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.44  E-value=6.3e-15  Score=137.78  Aligned_cols=209  Identities=32%  Similarity=0.436  Sum_probs=140.2

Q ss_pred             hHHHHHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCc
Q 009119            2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS   81 (543)
Q Consensus         2 ~~~~~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~   81 (543)
                      ++++..+.+-.++.|++..+.++|...+.  +         ....-...+++.|.+.++|..+..|..|+.+.+.+|.+.
T Consensus        43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~--~---------~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r  111 (722)
T KOG0532|consen   43 ERALEEAEYSGRLLLSGRRLKEFPRGAAS--Y---------DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR  111 (722)
T ss_pred             hHHHHHHhhhcccccccchhhcCCCcccc--c---------cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce
Confidence            56778888888899999999988887765  2         245566778888888888777777777777778888777


Q ss_pred             ccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCC
Q 009119           82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK  161 (543)
Q Consensus        82 ~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~  161 (543)
                      .+|.++.++..|++++|+.|.+..+|..+..++ |+.|-+++|+++.+|..++....|.+|+.+.|.+..+|..+..+.+
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s  190 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS  190 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence            777788888888888888777777776665443 6777777777777776666666666666666666666555555555


Q ss_pred             ccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCC
Q 009119          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA  241 (543)
Q Consensus       162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~  241 (543)
                      |+.|.+.+|                        .+..+|+.+.. -.|..||++.|++..+|-.|..++.|++|.+.+|.
T Consensus       191 lr~l~vrRn------------------------~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  191 LRDLNVRRN------------------------HLEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             HHHHHHhhh------------------------hhhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence            555555544                        44444444442 22555555555555555555555555555555555


Q ss_pred             CCCCCc
Q 009119          242 LSALPA  247 (543)
Q Consensus       242 l~~l~~  247 (543)
                      +..-|.
T Consensus       246 LqSPPA  251 (722)
T KOG0532|consen  246 LQSPPA  251 (722)
T ss_pred             CCCChH
Confidence            554444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.38  E-value=7.1e-14  Score=123.27  Aligned_cols=177  Identities=20%  Similarity=0.181  Sum_probs=112.5

Q ss_pred             ccCccEEEcCccccc-----cchHHhcCCCCCCEEEcCCCcCc----ccc-------hhhhccCCCCEEEcCCCCCC-CC
Q 009119           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM-KI  106 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~----~~~-------~~~~~~~~L~~L~l~~~~~~-~l  106 (543)
                      ...+++++|+||.+.     .+...+++.+.|+..++++--..    .+|       +++-.+++|++|+||.|.+. ..
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            456888888888776     45567888888888888764211    233       34556778888888888776 22


Q ss_pred             C----hhhcccCCccEEecCCCCccccc--------------ccccCCCCCCEEEccCCcCcc-----CCcccccCCCcc
Q 009119          107 P----DEIGSATALVKFDCSSNQLKELP--------------SSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMS  163 (543)
Q Consensus       107 ~----~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~~~~-----i~~~~~~~~~L~  163 (543)
                      +    .-+.+++.|++|++.+|.+....              .-.+.-+.|+++.++.|++.+     +...|...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            2    23556888888888888776211              123344577777777777663     334466667777


Q ss_pred             EEEecCCcccc----cchhhhcccccccEEECCCCcCC-----cCchhccCCCcccEEEccCCccc
Q 009119          164 KLDVEGNKLTV----LSNNLIASWTMLTELIASKNLLN-----GMPETIGSLSRLIRLDLHQNRIL  220 (543)
Q Consensus       164 ~L~l~~~~i~~----~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~  220 (543)
                      .+.+..|.|..    +....+..+++|+.|++.+|.++     .+...+..+++|+.+++++|.+.
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            77777776652    22344556666666666666653     23445556666666666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.37  E-value=1.9e-13  Score=117.90  Aligned_cols=131  Identities=27%  Similarity=0.354  Sum_probs=104.2

Q ss_pred             CCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeec
Q 009119          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL  482 (543)
Q Consensus       403 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  482 (543)
                      ..|+.+|+++|.|+.+...+ .-.|.++.|++++|++..++.  ++.+++|+.||+++|.++..... =..+.+++.|.+
T Consensus       284 q~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGW-HLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhhhhhhh-hhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhh-HhhhcCEeeeeh
Confidence            45788888888888877654 667888888888888887764  77788889999998877665332 246788899999


Q ss_pred             CCCccccCchhhhccCCCcEEeCCCCcccccc--ccccCCCCCCeEeCCCCcCCcCCC
Q 009119          483 RRMQLREAPTDILRLQQLRILDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPP  538 (543)
Q Consensus       483 ~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~~~~~  538 (543)
                      ++|.+..+ .++..+.+|..||+++|+++.+.  ..++++|-|+.+.+.+|++.-+++
T Consensus       360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            99988876 46777889999999999988764  458899999999999999887654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=1.8e-14  Score=134.82  Aligned_cols=187  Identities=30%  Similarity=0.431  Sum_probs=136.8

Q ss_pred             EEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCcccc
Q 009119          142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS  221 (543)
Q Consensus       142 L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  221 (543)
                      .+++.|++..+|..+..|..|+.+.++.|.+..+... +..+..|++++++.|++..+|..+..++ |+.|-+++|++..
T Consensus        80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~  157 (722)
T KOG0532|consen   80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS  157 (722)
T ss_pred             hhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc
Confidence            3444444444444444444455555544444444433 4455555566666666666666666655 7777788888888


Q ss_pred             CCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCc
Q 009119          222 IPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLR  301 (543)
Q Consensus       222 ~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~  301 (543)
                      +|..+.....|..++.+.|.+..+|..+.++.+|+.|.+..|++..++......+|..||++.|++..+|..|.+|++|+
T Consensus       158 lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq  237 (722)
T KOG0532|consen  158 LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQ  237 (722)
T ss_pred             CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhhe
Confidence            88777777888888888888888888888889999999999999988888888889999999999999999999999999


Q ss_pred             eeecCCCCcCcccccccCCCcHHHHHHHh
Q 009119          302 KLLLTGNPLRTLRSSLVNGPTPALLKYLR  330 (543)
Q Consensus       302 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  330 (543)
                      +|.+..|++++-+..+...+..+-+.++.
T Consensus       238 ~l~LenNPLqSPPAqIC~kGkVHIFKyL~  266 (722)
T KOG0532|consen  238 VLQLENNPLQSPPAQICEKGKVHIFKYLS  266 (722)
T ss_pred             eeeeccCCCCCChHHHHhccceeeeeeec
Confidence            99999999998877766665555544443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.35  E-value=1.6e-13  Score=121.02  Aligned_cols=132  Identities=21%  Similarity=0.246  Sum_probs=79.2

Q ss_pred             cCCccEEEcCCCcCccC-----ChhhccCCCCceeecccCcCCCC----CHHHhhCCCCCCEEEcCCCCCccc----CCC
Q 009119          379 AGEITKLDLSRNSIQEL-----PPELSSCASLQTLILSRNKIKDW----PDAILTSLSSLSCLKLDNNPLRQV----PSD  445 (543)
Q Consensus       379 ~~~L~~L~l~~~~l~~l-----~~~~~~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L~L~~n~l~~~----~~~  445 (543)
                      .+.|+++...+|.+.+-     ...+...+.|+.+.+..|.|...    ....|..|++|+.|+|+.|-++..    .+.
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            45667777777766552     23456666777777777766542    234456677777777777766532    223


Q ss_pred             ccCCCCCccEEEccCCcCCCCCCCCC-----CCCCcCceeecCCCccc-----cCchhhhccCCCcEEeCCCCcc
Q 009119          446 GFKDIPMLQILDLSYNIASLPENPPF-----SSLPHLQELYLRRMQLR-----EAPTDILRLQQLRILDLSQNSL  510 (543)
Q Consensus       446 ~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~~~~l  510 (543)
                      .++.++.|+++++++|.+...+..++     ...|+|+.|.+.+|.++     .+...+...+.|+.|+|++|++
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            35566677777777766655433322     23567777777777666     2233344466777777777766

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.34  E-value=4.8e-13  Score=110.89  Aligned_cols=124  Identities=32%  Similarity=0.422  Sum_probs=41.3

Q ss_pred             ccCCCCceeecccCcCCCCCHHHhh-CCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCc
Q 009119          400 SSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ  478 (543)
Q Consensus       400 ~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  478 (543)
                      .++.++++|++.+|.|+.+..  ++ .+.+|+.|++++|.++.+.  .+..+++|++|++++|.++.+.......+|+|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             --------------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             ccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            444566777777777766543  23 4567777777777777654  366677777777777777665322113467777


Q ss_pred             eeecCCCccccCc--hhhhccCCCcEEeCCCCcccccc----ccccCCCCCCeEe
Q 009119          479 ELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIP----EGFKNLTSLTELD  527 (543)
Q Consensus       479 ~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~l~----~~l~~~~~L~~L~  527 (543)
                      +|++++|+|..+.  ..+..+++|+.|++.||.+..-+    ..+..+|+|+.||
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            7777777776442  34556777777777777766432    3356777777776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.33  E-value=2.1e-12  Score=126.17  Aligned_cols=179  Identities=31%  Similarity=0.451  Sum_probs=149.1

Q ss_pred             ccCccEEEcCccccccchHHhcCCC-CCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119           44 AVDLQKLILAHNNIEKLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  122 (543)
                      .+.++.|++.++.+.+++....... +|+.|++++|.+..++..+..+++|+.|++++|++..++...+..+.|+.|+++
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence            3568999999999998887777774 899999999999888888889999999999999999888877788999999999


Q ss_pred             CCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchh
Q 009119          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (543)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (543)
                      +|++..+|........|+++.+++|.+...+..+..+.++..+.+..+.+..+.. .+..++.++++++++|.+..++. 
T Consensus       195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~l~~l~~L~~s~n~i~~i~~-  272 (394)
T COG4886         195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSISS-  272 (394)
T ss_pred             CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc-hhccccccceecccccccccccc-
Confidence            9999988877667778999999998766666778888888888888887765422 27777889999999999988876 


Q ss_pred             ccCCCcccEEEccCCccccCCC
Q 009119          203 IGSLSRLIRLDLHQNRILSIPS  224 (543)
Q Consensus       203 l~~~~~L~~L~l~~~~~~~~~~  224 (543)
                      +....+++.++++++.+...+.
T Consensus       273 ~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         273 LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccccCccCEEeccCccccccch
Confidence            7788899999999987775543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.32  E-value=2.7e-12  Score=125.36  Aligned_cols=197  Identities=34%  Similarity=0.473  Sum_probs=170.0

Q ss_pred             EEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccC-CCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcc
Q 009119           49 KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELH-MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK  127 (543)
Q Consensus        49 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~  127 (543)
                      .+++..+.+..-...+..++.++.+++.++.+..++....... +|+.|++++|.+..++..+..+++|+.|++++|++.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            5888888775444566677999999999999999988887775 999999999999999888999999999999999999


Q ss_pred             cccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCC
Q 009119          128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS  207 (543)
Q Consensus       128 ~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~  207 (543)
                      ++|......++|+.|+++++.+..+|........|+++.+++|.+..+... +....++..+.+..+++..++..+..++
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~-~~~~~~l~~l~l~~n~~~~~~~~~~~l~  255 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS-LSNLKNLSGLELSNNKLEDLPESIGNLS  255 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchh-hhhcccccccccCCceeeeccchhcccc
Confidence            998777788999999999999999988777777899999999954333332 7778888888899999888788888999


Q ss_pred             cccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCc
Q 009119          208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA  247 (543)
Q Consensus       208 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~  247 (543)
                      .++.|++++|.+..++. +....+++.++++++.+...+.
T Consensus       256 ~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         256 NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence            99999999999998877 8889999999999998875543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=2.4e-12  Score=106.77  Aligned_cols=121  Identities=26%  Similarity=0.366  Sum_probs=41.4

Q ss_pred             ccCccEEEcCccccccchHHhc-CCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhh-cccCCccEEec
Q 009119           44 AVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC  121 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~l  121 (543)
                      +.++++|+|+++.|..+. .+. .+.+|+.|++++|.+..+. .+..+++|+.|++++|.++.+...+ ..+++|++|++
T Consensus        18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            556788888888888774 344 5778888888888888773 5677788888888888888776554 35788888888


Q ss_pred             CCCCccccc--ccccCCCCCCEEEccCCcCccCCc----ccccCCCccEEE
Q 009119          122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLD  166 (543)
Q Consensus       122 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i~~----~~~~~~~L~~L~  166 (543)
                      ++|++.++.  ..+..+++|++|++.+|++...+.    .+..+|+|+.||
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            888777543  344556666666666666653321    134445555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=5.9e-13  Score=120.92  Aligned_cols=203  Identities=21%  Similarity=0.207  Sum_probs=114.9

Q ss_pred             hcCCCCCCEEEcCCCcCcccc--hhhhccCCCCEEEcCCCCCCC---CChhhcccCCccEEecCCCCccccccc--ccCC
Q 009119           64 LRNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSS--LGRC  136 (543)
Q Consensus        64 ~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~  136 (543)
                      =+++.+|+++.|.++.....+  .....|++++.|+|++|-+..   +.....++++|+.|+++.|.+......  -.-+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            345555666666665554333  244556666666666654442   222344566666666666665522211  1234


Q ss_pred             CCCCEEEccCCcCc--cCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCc--hhccCCCcccEE
Q 009119          137 LNLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRL  212 (543)
Q Consensus       137 ~~L~~L~l~~~~~~--~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L  212 (543)
                      ++|+.|.++.|.++  ++...+..+|+|+.|.+..|...-+......-+..|++|++++|.+...+  ...+.++.|..|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            56666666666665  34344556677777777766433333333445566777777777776655  345667777777


Q ss_pred             EccCCccccCC--CC-----CcCCCCCcEEEcCCCCCCCCC--ccccCCCCCCEEeCCCCccc
Q 009119          213 DLHQNRILSIP--SS-----ISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLK  266 (543)
Q Consensus       213 ~l~~~~~~~~~--~~-----~~~~~~L~~l~l~~~~l~~l~--~~l~~~~~L~~L~l~~n~l~  266 (543)
                      +++.+.+..+.  ..     ....++|+.|.+..|++..++  ..+..+++|+.+.+..|.+.
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            77777776432  21     234566677777766665443  24555566666666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.27  E-value=1.9e-12  Score=111.89  Aligned_cols=225  Identities=25%  Similarity=0.259  Sum_probs=147.0

Q ss_pred             hhccCCCCEEEcCCCC--CC-------CCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccc
Q 009119           87 IGELHMLKSLDVSFNS--IM-------KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLA  157 (543)
Q Consensus        87 ~~~~~~L~~L~l~~~~--~~-------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~  157 (543)
                      +..+.+|++|..++..  +.       .+|-.+.-..+|+.+.++.+.-..|......-+.|+++......+...+.-+.
T Consensus       178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p  257 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLP  257 (490)
T ss_pred             HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccc
Confidence            3445667777666542  11       12333444556666666666555443333334566666665544433221110


Q ss_pred             cCCCccEEEecCCccccc---chhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcE
Q 009119          158 DCSKMSKLDVEGNKLTVL---SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAE  234 (543)
Q Consensus       158 ~~~~L~~L~l~~~~i~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  234 (543)
                       ...+.  |.....-+..   .......+..|++++++.|.+..+.+.+.-.|.++.|+++.|.+..+. .+..+++|++
T Consensus       258 -e~~~~--D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~  333 (490)
T KOG1259|consen  258 -ETILA--DPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQL  333 (490)
T ss_pred             -hhhhc--CccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceE
Confidence             01111  1111000000   000122345688888888888888888888889999999999888774 3778889999


Q ss_pred             EEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCC--hhhcCCCCCceeecCCCCcCc
Q 009119          235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRT  312 (543)
Q Consensus       235 l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~~~~~~~  312 (543)
                      |++++|.+..+..|-.++-++++|.+.+|.+.++.-..-..+|..||+++|+|..+.  ..+++++.|+++.+.+|++..
T Consensus       334 LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  334 LDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            999999888777777788899999999998887766666677899999999888853  458999999999999999876


Q ss_pred             ccc
Q 009119          313 LRS  315 (543)
Q Consensus       313 ~~~  315 (543)
                      +..
T Consensus       414 ~vd  416 (490)
T KOG1259|consen  414 SVD  416 (490)
T ss_pred             cch
Confidence            654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=2.7e-12  Score=116.74  Aligned_cols=181  Identities=21%  Similarity=0.259  Sum_probs=86.8

Q ss_pred             hcccccceeeeCCCCCC---CCChhhhccCCccEEEcCCCcCccCChh--hccCCCCceeecccCcCCCC-CHHHhhCCC
Q 009119          354 RLSVTSKELSLEGMNLS---AIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDW-PDAILTSLS  427 (543)
Q Consensus       354 ~~~~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~l~~~--~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~  427 (543)
                      ..++.++.++++.+-+.   .+...+..+|+|+.|+++.|.+...-..  -..+++|++|.++.|.++.- ....+..+|
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            33455555555555333   2333344455555555555544331111  12344555555555555521 122334555


Q ss_pred             CCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCC-CCCCCCCCcCceeecCCCccccC--chh-----hhccCC
Q 009119          428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYLRRMQLREA--PTD-----ILRLQQ  499 (543)
Q Consensus       428 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l--~~~-----~~~~~~  499 (543)
                      +|+.|++.+|..-.+......-+..|++||+++|.+.+.. ....+.+|.|+.|+++.|.+.++  |..     ....++
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k  302 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK  302 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence            6666666555322222222334455666666665554432 22345556666666666665532  221     223456


Q ss_pred             CcEEeCCCCcccccc--ccccCCCCCCeEeCCCCcCC
Q 009119          500 LRILDLSQNSLQSIP--EGFKNLTSLTELDLSDNNIS  534 (543)
Q Consensus       500 L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~  534 (543)
                      |++|+++.|++...+  ..+..+++|+.|.+..|.+.
T Consensus       303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            666666666654432  22455555666665555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.01  E-value=4.3e-11  Score=116.87  Aligned_cols=243  Identities=27%  Similarity=0.355  Sum_probs=137.2

Q ss_pred             CCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEcc
Q 009119           66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS  145 (543)
Q Consensus        66 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  145 (543)
                      .+..++.+++..+.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|.++.+ ..+..+..|+.|++.
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLS  148 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheec
Confidence            3444444445555544432334555556666666665555544355566666666666666555 244444556666666


Q ss_pred             CCcCccCCcccccCCCccEEEecCCcccccch-hhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCC
Q 009119          146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS  224 (543)
Q Consensus       146 ~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  224 (543)
                      +|.+..+. .+..++.|+.+++++|.+..+.. . ...+..++.+.+.+|.+..+. .+.....+..+++.++.+..+..
T Consensus       149 ~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~  225 (414)
T KOG0531|consen  149 GNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG  225 (414)
T ss_pred             cCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC
Confidence            66665552 34446666666666666665554 2 345556666666666665443 22233344444666666654421


Q ss_pred             CCcCCC--CCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCC----CCh-hhcCC
Q 009119          225 SISGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG----LPP-EIGKM  297 (543)
Q Consensus       225 ~~~~~~--~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~----~~~-~l~~~  297 (543)
                       +....  +|+.++++++.+...+..+..+.++..+++..+.+...........+..+....+.+..    ... .....
T Consensus       226 -l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (414)
T KOG0531|consen  226 -LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAA  304 (414)
T ss_pred             -cccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccccc
Confidence             11222  37777888887777666667778888888888877765555444445555555554442    111 14556


Q ss_pred             CCCceeecCCCCcCcc
Q 009119          298 TTLRKLLLTGNPLRTL  313 (543)
Q Consensus       298 ~~L~~L~l~~~~~~~~  313 (543)
                      ..++.+.+..++....
T Consensus       305 ~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  305 PTLVTLTLELNPIRKI  320 (414)
T ss_pred             ccccccccccCccccc
Confidence            6777777777776543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.99  E-value=5.1e-10  Score=116.79  Aligned_cols=104  Identities=32%  Similarity=0.495  Sum_probs=53.3

Q ss_pred             cCccEEEcCccc--cccch-HHhcCCCCCCEEEcCCC-cCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEe
Q 009119           45 VDLQKLILAHNN--IEKLK-EDLRNLPLLTVLNVSHN-KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD  120 (543)
Q Consensus        45 ~~L~~L~l~~~~--~~~l~-~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  120 (543)
                      ++|+.|-+.++.  +..++ ..|..++.|++||+++| .+..+|..++.+.+|++|+++++.+..+|..+.++..|.+|+
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN  624 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence            345555555553  33333 23555555555555544 344555555555555555555555555555555555555555


Q ss_pred             cCCCCcc-cccccccCCCCCCEEEccCCc
Q 009119          121 CSSNQLK-ELPSSLGRCLNLSDFKASNNC  148 (543)
Q Consensus       121 l~~~~~~-~~~~~~~~~~~L~~L~l~~~~  148 (543)
                      +..+... .+|.....+.+|++|.+....
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccc
Confidence            5544432 223333335555555554443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.96  E-value=8.8e-11  Score=114.69  Aligned_cols=217  Identities=28%  Similarity=0.389  Sum_probs=136.5

Q ss_pred             ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (543)
                      +..++.+.++.+.+..+...+..+++|+.+++.+|.+..+...+..+++|++|++++|.++.+ ..+..++.|+.|++++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG  149 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence            455666777777777655567777777777777777776644466777777777777777765 2345566677777777


Q ss_pred             CCcccccccccCCCCCCEEEccCCcCccCCcc-cccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchh
Q 009119          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (543)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (543)
                      |.+..+ ..+..++.|+.+++++|.+..+... ...+.+++.+.+.+|.+..+..  +.....+..+++..|.+..+.. 
T Consensus       150 N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~-  225 (414)
T KOG0531|consen  150 NLISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG-  225 (414)
T ss_pred             Ccchhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC-
Confidence            777766 3455577777777777777766432 4667777777777777765554  3333344444666666554432 


Q ss_pred             ccCCC--cccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccc
Q 009119          203 IGSLS--RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (543)
Q Consensus       203 l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~  266 (543)
                      +....  +|+.++++++.+..++..+..+..+..+++.++.+..... +...+.+..+....+.+.
T Consensus       226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHHHhccCcchhc
Confidence            11122  3677777777776665555666777777777766664421 233344444555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=1.2e-09  Score=74.40  Aligned_cols=58  Identities=40%  Similarity=0.590  Sum_probs=25.5

Q ss_pred             CCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCC
Q 009119          428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM  485 (543)
Q Consensus       428 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  485 (543)
                      +|++|++++|++..++...|.++++|++|++++|.+..+.+.+|..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            3444444444444444444444444444444444444443344444444444444444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=9.4e-10  Score=74.93  Aligned_cols=61  Identities=39%  Similarity=0.633  Sum_probs=45.8

Q ss_pred             CCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcC
Q 009119          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA  463 (543)
Q Consensus       403 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  463 (543)
                      |+|++|++++|+++.++...|.++++|++|++++|.+..++..+|.++++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777777777777777777777777777777777777777777777777777753

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.84  E-value=3.4e-09  Score=110.72  Aligned_cols=262  Identities=22%  Similarity=0.262  Sum_probs=174.0

Q ss_pred             cCccEEEcCccccccchHHhcCCCCCCEEEcCCCc--Ccccch-hhhccCCCCEEEcCCCC-CCCCChhhcccCCccEEe
Q 009119           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK--LSELPA-AIGELHMLKSLDVSFNS-IMKIPDEIGSATALVKFD  120 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~--l~~~~~-~~~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~  120 (543)
                      ...+...+.++.+..++... .++.|++|-+..+.  +..++. .|..++.|..||+++|. +..+|..++.+-+|++|+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            46788898888888775443 45589999999986  666655 57889999999999775 679999999999999999


Q ss_pred             cCCCCcccccccccCCCCCCEEEccCCcCc-cCCcccccCCCccEEEecCCc--ccccchhhhcccccccEEECCCCcCC
Q 009119          121 CSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK--LTVLSNNLIASWTMLTELIASKNLLN  197 (543)
Q Consensus       121 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~L~~L~l~~~~~~  197 (543)
                      ++++.++.+|..+.++..|.+|++..+... .++.....+.+|++|.+....  ........+..+.+|+.+....... 
T Consensus       602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-  680 (889)
T KOG4658|consen  602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-  680 (889)
T ss_pred             ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence            999999999999999999999999988654 445556669999999987654  2223333344555555555544333 


Q ss_pred             cCchhccCCCccc----EEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCc-cc-----cC-CCCCCEEeCCCCc-c
Q 009119          198 GMPETIGSLSRLI----RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-EL-----GK-LSKLGTLDLHSNQ-L  265 (543)
Q Consensus       198 ~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~-~l-----~~-~~~L~~L~l~~n~-l  265 (543)
                      .+.+.+..+..|.    .+.+.++.....+.....+.+|+.|.+.++.+..... +.     .. ++++..+.+.++. .
T Consensus       681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~  760 (889)
T KOG4658|consen  681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML  760 (889)
T ss_pred             HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc
Confidence            1222222333332    3333344445556667788888888888887763211 11     11 3344444444443 2


Q ss_pred             cccchhhhcceecEEEccCCCCCC-CChhhcCCCCCceeecCCC
Q 009119          266 KEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGN  308 (543)
Q Consensus       266 ~~~~~~~~~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~~~  308 (543)
                      .......++++|+.+.+..|.... +.+....+..+..+.+.-+
T Consensus       761 r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~  804 (889)
T KOG4658|consen  761 RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN  804 (889)
T ss_pred             cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc
Confidence            344445677778888888875544 3334445555554444333

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.83  E-value=6.8e-11  Score=114.43  Aligned_cols=198  Identities=26%  Similarity=0.328  Sum_probs=126.3

Q ss_pred             HHHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccc
Q 009119            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (543)
Q Consensus         5 ~~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~   84 (543)
                      +.+...+..+-.-+..-++ |..++.             +..|++|.+++|.+........--..|++|-. ++.++.+-
T Consensus        83 lqkt~~lkl~~~pa~~pt~-pi~ifp-------------F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC-~~Sl~Al~  147 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTE-PISIFP-------------FRSLRVLELRGCDLSTAKGLQELRHQLEKLIC-HNSLDALR  147 (1096)
T ss_pred             HhhheeeeecccCCCCCCC-Cceecc-------------ccceeeEEecCcchhhhhhhHHHHHhhhhhhh-hccHHHHH
Confidence            3333344344444444444 666654             57899999999988753222222234555532 22332111


Q ss_pred             h-------hhhc---cCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCc
Q 009119           85 A-------AIGE---LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE  154 (543)
Q Consensus        85 ~-------~~~~---~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~  154 (543)
                      .       .+++   --.|...+++.|.+..+..++.-++.++.|+++.|+++... .+..+++|++||++.|++..+|.
T Consensus       148 ~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~  226 (1096)
T KOG1859|consen  148 HVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQ  226 (1096)
T ss_pred             HHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccc
Confidence            1       1111   12577777788877777777777888888888888887663 67778888888888888776654


Q ss_pred             c-cccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCch--hccCCCcccEEEccCCcccc
Q 009119          155 D-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILS  221 (543)
Q Consensus       155 ~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~  221 (543)
                      . ...|. |..|.+++|.++....  +.++.+|+.||++.|-+....+  .+..+..|+.|++.+|.+..
T Consensus       227 l~~~gc~-L~~L~lrnN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  227 LSMVGCK-LQLLNLRNNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cchhhhh-heeeeecccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            3 23333 8888888887776655  7777888888888887755432  35556778888888887663

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.7e-10  Score=98.70  Aligned_cols=171  Identities=20%  Similarity=0.216  Sum_probs=110.4

Q ss_pred             CccEEEcCccccc--cchHHhcCCCCCCEEEcCCCcCc-ccchhhhccCCCCEEEcCCCC-CCC--CChhhcccCCccEE
Q 009119           46 DLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNS-IMK--IPDEIGSATALVKF  119 (543)
Q Consensus        46 ~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~-~~~--l~~~~~~~~~L~~L  119 (543)
                      +|++++|+...++  .+..-++.|.+|+.|.+.++++. .+...+.+..+|+.|+++.+. +++  +.-.+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5788888887776  44456777888888888888777 455677778888888888775 442  23346778888888


Q ss_pred             ecCCCCccc--ccccccC-CCCCCEEEccCCcCc----cCCcccccCCCccEEEecCCc-ccccchhhhcccccccEEEC
Q 009119          120 DCSSNQLKE--LPSSLGR-CLNLSDFKASNNCIT----SLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIA  191 (543)
Q Consensus       120 ~l~~~~~~~--~~~~~~~-~~~L~~L~l~~~~~~----~i~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l  191 (543)
                      +++.|....  +.....+ -++|+.|+++++.-.    .+..-..+|++|.+||++++. ++.-....+.+++.|+++.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            888776551  1111222 247777788776432    333345677888888887763 44444445666777777777


Q ss_pred             CCCcCCcCch---hccCCCcccEEEccCC
Q 009119          192 SKNLLNGMPE---TIGSLSRLIRLDLHQN  217 (543)
Q Consensus       192 ~~~~~~~~~~---~l~~~~~L~~L~l~~~  217 (543)
                      +.|..- +|.   .+...|.|.+|++-++
T Consensus       346 sRCY~i-~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYDI-IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence            776532 111   3456677777777664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.63  E-value=1.4e-08  Score=87.14  Aligned_cols=182  Identities=22%  Similarity=0.264  Sum_probs=133.9

Q ss_pred             ccccceeeeCCCCCC-----CCChhhhccCCccEEEcCCCcCcc----C-------ChhhccCCCCceeecccCcCCCCC
Q 009119          356 SVTSKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE----L-------PPELSSCASLQTLILSRNKIKDWP  419 (543)
Q Consensus       356 ~~~l~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~~----l-------~~~~~~~~~L~~L~l~~~~i~~~~  419 (543)
                      ...+..+++++|.+.     ++...+..-.+|+..+++.--...    +       ...+..||+|+.+++++|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            467889999999886     344555566888888888753222    2       235788999999999999887533


Q ss_pred             H----HHhhCCCCCCEEEcCCCCCcccCCCcc-------------CCCCCccEEEccCCcCCCCCC----CCCCCCCcCc
Q 009119          420 D----AILTSLSSLSCLKLDNNPLRQVPSDGF-------------KDIPMLQILDLSYNIASLPEN----PPFSSLPHLQ  478 (543)
Q Consensus       420 ~----~~l~~~~~L~~L~L~~n~l~~~~~~~~-------------~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~  478 (543)
                      +    .-+..-..|.+|.+++|.+..+....+             ..-|.|+++.+..|.+.....    ..+..-.+|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            3    334567899999999998875433322             356899999999998765422    1234457899


Q ss_pred             eeecCCCcccc-----C-chhhhccCCCcEEeCCCCccc-----cccccccCCCCCCeEeCCCCcCCcCC
Q 009119          479 ELYLRRMQLRE-----A-PTDILRLQQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNISALP  537 (543)
Q Consensus       479 ~L~l~~~~l~~-----l-~~~~~~~~~L~~L~l~~~~l~-----~l~~~l~~~~~L~~L~l~~~~~~~~~  537 (543)
                      ++.+.+|.|.-     + -..++.+++|+.||+.+|-++     .+...+..++.|++|.+.+|-++.-+
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G  258 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG  258 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence            99999998871     1 234567999999999999877     23455778899999999999887543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.57  E-value=7.8e-10  Score=107.28  Aligned_cols=127  Identities=28%  Similarity=0.304  Sum_probs=97.4

Q ss_pred             CCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEcc
Q 009119          380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (543)
Q Consensus       380 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  459 (543)
                      ..|...+++.|.+..+..++.-++.++.|+|++|++++..  .+..|+.|++|||++|.+..++..+-.+|. |..|.++
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            3566777888888888888888888889999988888776  367888899999998888877766556666 8888888


Q ss_pred             CCcCCCCCCCCCCCCCcCceeecCCCccccCc--hhhhccCCCcEEeCCCCccc
Q 009119          460 YNIASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       460 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~  511 (543)
                      +|.++....  +.++.+|..|++++|-+....  ..+..+..|+.|.|.||.+-
T Consensus       241 nN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            888776533  567888888888888777332  23556778888888888764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=4.1e-09  Score=91.49  Aligned_cols=175  Identities=16%  Similarity=0.162  Sum_probs=125.8

Q ss_pred             hcCeeecCCCcccccch-hhhhcccccCCCCccccccCccEEEcCccccc-cchHHhcCCCCCCEEEcCCC-cCccc--c
Q 009119           10 TSGSLNLSNRSLRDVPN-EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHN-KLSEL--P   84 (543)
Q Consensus        10 ~~~~l~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~-~l~~~--~   84 (543)
                      .++.+|+|...|+.-.. .+.            .+|.+|+.|++.|..+. .+...++...+|+.|+++.| +++..  .
T Consensus       186 Rlq~lDLS~s~it~stl~~iL------------s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~  253 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGIL------------SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ  253 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHH------------HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH
Confidence            46788999888873221 222            23788999999999887 45567889999999999988 45533  3


Q ss_pred             hhhhccCCCCEEEcCCCCCC--CCChhhcc-cCCccEEecCCCCcc----cccccccCCCCCCEEEccCCcCc--cCCcc
Q 009119           85 AAIGELHMLKSLDVSFNSIM--KIPDEIGS-ATALVKFDCSSNQLK----ELPSSLGRCLNLSDFKASNNCIT--SLPED  155 (543)
Q Consensus        85 ~~~~~~~~L~~L~l~~~~~~--~l~~~~~~-~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~--~i~~~  155 (543)
                      -.+.+|..|..|+++-|.+.  .+...+.. -++|..|+++|+.-.    .+.....+|++|.+||++++..-  .....
T Consensus       254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~  333 (419)
T KOG2120|consen  254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE  333 (419)
T ss_pred             HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH
Confidence            36789999999999988755  22223333 478889999988533    34444578999999999998533  44556


Q ss_pred             cccCCCccEEEecCCccc-ccchhhhcccccccEEECCCCcC
Q 009119          156 LADCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLL  196 (543)
Q Consensus       156 ~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~~  196 (543)
                      +.+++.|++|.+++|..- --..-.+...+.|.+|++.++--
T Consensus       334 ~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  334 FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            888999999999998532 11112266778899999988643

>PLN03150 hypothetical protein; Provisional

Probab=98.53  E-value=2.9e-07  Score=94.33  Aligned_cols=84  Identities=24%  Similarity=0.321  Sum_probs=35.4

Q ss_pred             CceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCC
Q 009119          405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR  484 (543)
Q Consensus       405 L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  484 (543)
                      ++.|+|++|.+....+..+..+++|+.|+|++|.+.+.....+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            33444444444433333344444444444444444332222244444444444444444444344444444444444444


Q ss_pred             Cccc
Q 009119          485 MQLR  488 (543)
Q Consensus       485 ~~l~  488 (543)
                      |.++
T Consensus       500 N~l~  503 (623)
T PLN03150        500 NSLS  503 (623)
T ss_pred             Cccc
Confidence            4444

>PLN03150 hypothetical protein; Provisional

Probab=98.48  E-value=4.2e-07  Score=93.24  Aligned_cols=105  Identities=25%  Similarity=0.317  Sum_probs=73.2

Q ss_pred             ccEEEcCCCcCcc-CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119          382 ITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (543)
Q Consensus       382 L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  460 (543)
                      ++.|+++++.+.. +|..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|++.......+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            6677777777764 666777777777777777777766666667777777777777777765555577777777777777


Q ss_pred             CcCCCCCCCCCCC-CCcCceeecCCCc
Q 009119          461 NIASLPENPPFSS-LPHLQELYLRRMQ  486 (543)
Q Consensus       461 n~~~~~~~~~~~~-~~~L~~L~l~~~~  486 (543)
                      |.+....+..+.. ..++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            7777666555543 2455666666664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.48  E-value=1.9e-07  Score=80.31  Aligned_cols=176  Identities=20%  Similarity=0.177  Sum_probs=99.6

Q ss_pred             cCccEEEcCccccc-----cchHHhcCCCCCCEEEcCCCcCc----c-------cchhhhccCCCCEEEcCCCCCC-CCC
Q 009119           45 VDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----E-------LPAAIGELHMLKSLDVSFNSIM-KIP  107 (543)
Q Consensus        45 ~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~----~-------~~~~~~~~~~L~~L~l~~~~~~-~l~  107 (543)
                      ..+..++||||.+.     .+...+++-.+|+..++++--..    .       +..++-+||+|+.++|+.|.+. ..|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            34566666666655     23345556666666666543211    1       1234456666666666666655 222


Q ss_pred             h----hhcccCCccEEecCCCCccccc-----c---------cccCCCCCCEEEccCCcCccCCc-----ccccCCCccE
Q 009119          108 D----EIGSATALVKFDCSSNQLKELP-----S---------SLGRCLNLSDFKASNNCITSLPE-----DLADCSKMSK  164 (543)
Q Consensus       108 ~----~~~~~~~L~~L~l~~~~~~~~~-----~---------~~~~~~~L~~L~l~~~~~~~i~~-----~~~~~~~L~~  164 (543)
                      .    .+.+.+.|.+|.+++|.+.-+.     .         -.+.-+.|+++.+..|++...+.     .+.....|+.
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE  189 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence            2    3455666666666666555221     1         12233567777777776664432     2333357777


Q ss_pred             EEecCCccccc-----chhhhcccccccEEECCCCcCCc-----CchhccCCCcccEEEccCCccc
Q 009119          165 LDVEGNKLTVL-----SNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL  220 (543)
Q Consensus       165 L~l~~~~i~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~  220 (543)
                      +.+..|.|..-     ....+..+.+|+.|++..|.++.     +...+..++.|+.|.+.+|-++
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            77777766522     11224445677777777777642     3345667778888888888665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.46  E-value=1.2e-07  Score=58.67  Aligned_cols=39  Identities=41%  Similarity=0.647  Sum_probs=22.3

Q ss_pred             CCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCcCC
Q 009119          499 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP  537 (543)
Q Consensus       499 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~  537 (543)
                      +|++|++++|+++.+|..+.++++|+.|++++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            456666666666666555566666666666666666554

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.42  E-value=1.3e-08  Score=92.76  Aligned_cols=131  Identities=21%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             cCCccEEEcCCCcC-ccC--ChhhccCCCCceeecccCc-CCCCCHHHhh-CCCCCCEEEcCCCCCcccC--CCccCCCC
Q 009119          379 AGEITKLDLSRNSI-QEL--PPELSSCASLQTLILSRNK-IKDWPDAILT-SLSSLSCLKLDNNPLRQVP--SDGFKDIP  451 (543)
Q Consensus       379 ~~~L~~L~l~~~~l-~~l--~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~-~~~~L~~L~L~~n~l~~~~--~~~~~~~~  451 (543)
                      +..|+.++.++|.- ++.  ..--..+++|+.+-+..|+ +++.....++ +++.|+.+++.++......  ...-.+|+
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            45556666655532 221  1112345666666666653 4544443333 3556666666655433211  01123455


Q ss_pred             CccEEEccCCcCCCCC-----CCCCCCCCcCceeecCCCccc--cCchhhhccCCCcEEeCCCCc
Q 009119          452 MLQILDLSYNIASLPE-----NPPFSSLPHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNS  509 (543)
Q Consensus       452 ~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~  509 (543)
                      .|+++.++.+....-.     ...-.....|+.+-++++...  +.-+.+..|+.|+.+++-+|+
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            6666666554322111     011123445555555555333  233444555555555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.41  E-value=6.3e-08  Score=74.17  Aligned_cols=107  Identities=20%  Similarity=0.298  Sum_probs=55.0

Q ss_pred             ccEEEcCccccccchHH---hcCCCCCCEEEcCCCcCcccchhhhc-cCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119           47 LQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (543)
Q Consensus        47 L~~L~l~~~~~~~l~~~---~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  122 (543)
                      +-.++|+.|++..++++   +.....|+.++|++|.+.++|..|.. .+.++.+++++|.+..+|..+..++.|+.++++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            44455555555544432   33344445555555555555554432 335555555555555555555555555555555


Q ss_pred             CCCcccccccccCCCCCCEEEccCCcCccCC
Q 009119          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP  153 (543)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~  153 (543)
                      .|.+...|..+..+.++-.|+..++....++
T Consensus       109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             cCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence            5555555544444555555555555444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.38  E-value=3.6e-08  Score=75.45  Aligned_cols=111  Identities=19%  Similarity=0.250  Sum_probs=88.4

Q ss_pred             CCCCEEEcCCCcCcccchh---hhccCCCCEEEcCCCCCCCCChhhcc-cCCccEEecCCCCcccccccccCCCCCCEEE
Q 009119           68 PLLTVLNVSHNKLSELPAA---IGELHMLKSLDVSFNSIMKIPDEIGS-ATALVKFDCSSNQLKELPSSLGRCLNLSDFK  143 (543)
Q Consensus        68 ~~L~~L~l~~~~l~~~~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  143 (543)
                      .-+..++|+.|.+..++++   +....+|+.+++++|.+..+|..|.. .+.++++++++|.++++|..+..++.|+.++
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            4456678888888766554   45566788889999988888887765 4588899999999998988888888899999


Q ss_pred             ccCCcCccCCcccccCCCccEEEecCCcccccchh
Q 009119          144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN  178 (543)
Q Consensus       144 l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~  178 (543)
                      ++.|.+...|..+..+.++..|+..++.+..++.+
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            98888888887777788888888888877777665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.35  E-value=4.1e-08  Score=89.51  Aligned_cols=154  Identities=22%  Similarity=0.211  Sum_probs=96.6

Q ss_pred             cCCccEEEcCCCc-CccCC--hhhccCCCCceeecccC-cCCCCCHHHh-hCCCCCCEEEcCCCCC-cccCCCcc-CCCC
Q 009119          379 AGEITKLDLSRNS-IQELP--PELSSCASLQTLILSRN-KIKDWPDAIL-TSLSSLSCLKLDNNPL-RQVPSDGF-KDIP  451 (543)
Q Consensus       379 ~~~L~~L~l~~~~-l~~l~--~~~~~~~~L~~L~l~~~-~i~~~~~~~l-~~~~~L~~L~L~~n~l-~~~~~~~~-~~~~  451 (543)
                      +.-+.++++..|. +++..  ..-..+..|+.|+.+++ .+++.....+ .++++|+.+.+.+|+- ++.....+ .+++
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~  346 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP  346 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence            3445556655553 44422  12356778888888886 4555444333 3578888888888873 22222222 4577


Q ss_pred             CccEEEccCCcCCCC--CCCCCCCCCcCceeecCCC-cccc-----CchhhhccCCCcEEeCCCCccc--cccccccCCC
Q 009119          452 MLQILDLSYNIASLP--ENPPFSSLPHLQELYLRRM-QLRE-----APTDILRLQQLRILDLSQNSLQ--SIPEGFKNLT  521 (543)
Q Consensus       452 ~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~~-~l~~-----l~~~~~~~~~L~~L~l~~~~l~--~l~~~l~~~~  521 (543)
                      .|+.+++.++.....  ....-.+++.|+.|.++.| .++.     +...-.++..|+.+.+++|...  ..-+.+..|+
T Consensus       347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence            888888887654322  1222357788888888877 3442     2333345678888888888754  3346678888


Q ss_pred             CCCeEeCCCCc
Q 009119          522 SLTELDLSDNN  532 (543)
Q Consensus       522 ~L~~L~l~~~~  532 (543)
                      +|+.+++-+|+
T Consensus       427 ~Leri~l~~~q  437 (483)
T KOG4341|consen  427 NLERIELIDCQ  437 (483)
T ss_pred             ccceeeeechh
Confidence            88888888774

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.31  E-value=1.7e-06  Score=69.66  Aligned_cols=121  Identities=18%  Similarity=0.362  Sum_probs=59.1

Q ss_pred             hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcC
Q 009119          398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL  477 (543)
Q Consensus       398 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  477 (543)
                      .|..+.+|+.+.+.. .+..+....|.++++|+.+.+.++ +..++..+|.++++++.+.+.+ .+......+|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            356667777777764 466666666777777777777664 6667777777777777777765 4444445566777777


Q ss_pred             ceeecCCCccccCchh-hhccCCCcEEeCCCCccccc-cccccCCCCCC
Q 009119          478 QELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSI-PEGFKNLTSLT  524 (543)
Q Consensus       478 ~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~  524 (543)
                      +.+.+..+ ++.++.. +..+ .|+.+.+.+ .+..+ ...|.+|++|+
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            77777654 5544443 3344 777777765 44444 24466666664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.30  E-value=1.2e-06  Score=72.13  Aligned_cols=82  Identities=26%  Similarity=0.318  Sum_probs=39.0

Q ss_pred             CceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCC-CCCCCCCCcCceeecC
Q 009119          405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYLR  483 (543)
Q Consensus       405 L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~  483 (543)
                      ...+|+++|.+.....  |..++.|.+|.+.+|+|+.+...--..++.|..|.+.+|.+.... ...+..||+|++|.+-
T Consensus        44 ~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            3445555555444333  445555555555555555544443333445555555555443221 1223445555555555


Q ss_pred             CCccc
Q 009119          484 RMQLR  488 (543)
Q Consensus       484 ~~~l~  488 (543)
                      +|.++
T Consensus       122 ~Npv~  126 (233)
T KOG1644|consen  122 GNPVE  126 (233)
T ss_pred             CCchh
Confidence            55444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=3.6e-07  Score=79.69  Aligned_cols=215  Identities=20%  Similarity=0.225  Sum_probs=116.5

Q ss_pred             ccEEEcCccccccch--HHh-cCCCCCCEEEcCCCcCccc---chhhhccCCCCEEEcCCCCCCCCChhh-cccCCccEE
Q 009119           47 LQKLILAHNNIEKLK--EDL-RNLPLLTVLNVSHNKLSEL---PAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKF  119 (543)
Q Consensus        47 L~~L~l~~~~~~~l~--~~~-~~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L  119 (543)
                      ++.+.+.++.|...-  ..| ..++.++++||.+|.+.+.   ...+.++|+|+.|+++.|++...-..+ ....+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            446667777766432  233 3577888888888888744   334567888888888888776332222 356678888


Q ss_pred             ecCCCCcc--cccccccCCCCCCEEEccCCcCccC---CcccccC-CCccEEEecCCcccc-c-chhhhcccccccEEEC
Q 009119          120 DCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSL---PEDLADC-SKMSKLDVEGNKLTV-L-SNNLIASWTMLTELIA  191 (543)
Q Consensus       120 ~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~i---~~~~~~~-~~L~~L~l~~~~i~~-~-~~~~~~~~~~L~~L~l  191 (543)
                      -+.|+.+.  .....+..++.++.|.++.|....+   ....... +.++++...+|.... . ......-++++..+-+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            88777655  4445566777777777777743311   1111111 234444444443220 0 0011222345555555


Q ss_pred             CCCcCCcCch--hccCCCcccEEEccCCccccCC--CCCcCCCCCcEEEcCCCCCCCC-----C--ccccCCCCCCEEeC
Q 009119          192 SKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSAL-----P--AELGKLSKLGTLDL  260 (543)
Q Consensus       192 ~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~l~~l-----~--~~l~~~~~L~~L~l  260 (543)
                      -.+++.....  .....+.+-.|+++.+++....  .++.+.+.|+.+.+.++++.+-     +  -.++.+++++.|+=
T Consensus       207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            5555533321  2233444555666665555322  2345566666666666655411     1  12456677777764


Q ss_pred             C
Q 009119          261 H  261 (543)
Q Consensus       261 ~  261 (543)
                      +
T Consensus       287 s  287 (418)
T KOG2982|consen  287 S  287 (418)
T ss_pred             c
Confidence            4

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.24  E-value=8.4e-06  Score=76.67  Aligned_cols=136  Identities=16%  Similarity=0.232  Sum_probs=86.3

Q ss_pred             ccccceeeeCCCCCCCCChhhhccCCccEEEcCCCc-CccCChhhccCCCCceeecccC-cCCCCCHHHhhCCCCCCEEE
Q 009119          356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLK  433 (543)
Q Consensus       356 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~  433 (543)
                      ...+..|++++|.++.+|.   -.++|++|.+++|. ++.+|..+  .++|++|++++| .+..++       ++|+.|+
T Consensus        51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~  118 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRSLE  118 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccceEE
Confidence            3678889999888888872   24578889988764 56677544  257888898887 554332       4678888


Q ss_pred             cCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCc
Q 009119          434 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS  509 (543)
Q Consensus       434 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~  509 (543)
                      +.++....+..    -.++|+.|.+.++.........-.-.++|++|++++|....+|..+.  .+|+.|.++.+.
T Consensus       119 L~~n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        119 IKGSATDSIKN----VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             eCCCCCccccc----CcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence            87665443321    12467777775432111110000122678889888887666665544  588888887763

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.24  E-value=7.8e-06  Score=76.89  Aligned_cols=134  Identities=18%  Similarity=0.217  Sum_probs=93.4

Q ss_pred             hhccCCccEEEcCCCcCccCChhhccCCCCceeecccC-cCCCCCHHHhhCCCCCCEEEcCCC-CCcccCCCccCCCCCc
Q 009119          376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNN-PLRQVPSDGFKDIPML  453 (543)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L  453 (543)
                      +..+..++.|++++|.++.+|.   -..+|+.|.+++| .++.++. .+  .++|++|++++| .+..++       ++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP-------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLP-------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCcccccccc-------ccc
Confidence            4457899999999999999882   2346999999986 4544442 22  368999999998 444332       578


Q ss_pred             cEEEccCCcCCCCCCCCCCCC-CcCceeecCCCccc---cCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCC
Q 009119          454 QILDLSYNIASLPENPPFSSL-PHLQELYLRRMQLR---EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLS  529 (543)
Q Consensus       454 ~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~~~l~---~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~  529 (543)
                      +.|+++++....     +..+ ++|++|.+.+++..   .++..  -.++|++|++++|....+|..+.  .+|+.|+++
T Consensus       115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLH  185 (426)
T ss_pred             ceEEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence            889988765443     2233 57889988654311   22211  12789999999998766665444  589999988


Q ss_pred             CC
Q 009119          530 DN  531 (543)
Q Consensus       530 ~~  531 (543)
                      .+
T Consensus       186 ~n  187 (426)
T PRK15386        186 IE  187 (426)
T ss_pred             cc
Confidence            76

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.23  E-value=2.1e-06  Score=53.12  Aligned_cols=38  Identities=42%  Similarity=0.675  Sum_probs=23.7

Q ss_pred             CccEEEcCccccccchHHhcCCCCCCEEEcCCCcCccc
Q 009119           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL   83 (543)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~   83 (543)
                      +|++|++++|.+++++..++++++|+.|++++|.++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            46666666666666665566666666666666666655

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.22  E-value=1.9e-06  Score=71.05  Aligned_cols=129  Identities=26%  Similarity=0.370  Sum_probs=97.8

Q ss_pred             cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCC
Q 009119          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP  438 (543)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~  438 (543)
                      -+++++++.++..+...-.-......+|+++|.+..++ .|..++.|..|.+.+|.|+.+.+..-.-+++|+.|.+.+|+
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            35667777666544331112346678999999988866 36788999999999999999998877778999999999999


Q ss_pred             CcccCC-CccCCCCCccEEEccCCcCCCC---CCCCCCCCCcCceeecCCCccc
Q 009119          439 LRQVPS-DGFKDIPMLQILDLSYNIASLP---ENPPFSSLPHLQELYLRRMQLR  488 (543)
Q Consensus       439 l~~~~~-~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~~~l~  488 (543)
                      +..++. ..+..||+|++|.+-+|.+...   -...+..+|+|+.|+.+.-.-.
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            887543 3478899999999999987643   1223567899999998876443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.18  E-value=4.3e-06  Score=67.32  Aligned_cols=118  Identities=17%  Similarity=0.359  Sum_probs=75.2

Q ss_pred             CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhc
Q 009119          418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILR  496 (543)
Q Consensus       418 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~  496 (543)
                      ++..+|.++.+|+.+.+.. .+..++..+|..+++|+.+.+.++ +..+...+|..+++++.+.+.+ .+..++.. +..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            3455688999999999985 688899999999999999999885 7777778899999999999987 66555544 455


Q ss_pred             cCCCcEEeCCCCccccc-cccccCCCCCCeEeCCCCcCCcCCCCcC
Q 009119          497 LQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELV  541 (543)
Q Consensus       497 ~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~  541 (543)
                      +++|+.+++..+ +..+ ...+..+ .|+.+.+.+ .+..++...|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F  122 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAF  122 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GG
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccc
Confidence            999999999875 7766 4567887 999999886 6666776654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=9.6e-07  Score=77.13  Aligned_cols=178  Identities=22%  Similarity=0.299  Sum_probs=87.5

Q ss_pred             cccceeeeCCCCCC---CCChhhhccCCccEEEcCCCcCccCChhh-ccCCCCceeecccCcCCC-CCHHHhhCCCCCCE
Q 009119          357 VTSKELSLEGMNLS---AIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD-WPDAILTSLSSLSC  431 (543)
Q Consensus       357 ~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~  431 (543)
                      ..++.+++.+|.+.   ++...+.++|.|+.|+++.|.+...-..+ ....+|+.|.+.+..+.- .....+..+|.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            44566666666555   34444556788888888888765522222 355677888887776552 22233466777788


Q ss_pred             EEcCCCCCcc--cCCCccCCC-CCccEEEccCCcCCCC--CCCCCCCCCcCceeecCCCccccC--chhhhccCCCcEEe
Q 009119          432 LKLDNNPLRQ--VPSDGFKDI-PMLQILDLSYNIASLP--ENPPFSSLPHLQELYLRRMQLREA--PTDILRLQQLRILD  504 (543)
Q Consensus       432 L~L~~n~l~~--~~~~~~~~~-~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~~~l~~l--~~~~~~~~~L~~L~  504 (543)
                      |.++.|.+..  +.++..... +.+.++.+.+|.....  ...--.-+|++..+.+..|.++..  .+.....+.+..|+
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            8777775443  222212111 2334443333321100  000012235555555555544422  12233344455555


Q ss_pred             CCCCcccccc--ccccCCCCCCeEeCCCCcCC
Q 009119          505 LSQNSLQSIP--EGFKNLTSLTELDLSDNNIS  534 (543)
Q Consensus       505 l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~  534 (543)
                      |+.+++....  ..+..++.|.-|.+.++++.
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            5555544321  23444555555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.05  E-value=5.7e-06  Score=84.72  Aligned_cols=82  Identities=18%  Similarity=0.259  Sum_probs=41.8

Q ss_pred             ccCccEEEcCccccc--cchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCC--hhhcccCCccEE
Q 009119           44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP--DEIGSATALVKF  119 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L  119 (543)
                      +|.|+.|.+.+-.+.  ++...++++|+|..||+|+++++.+ ..++++++|+.|.+.+-.+..-.  ..+.++++|++|
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            455555555554443  2334455555555555555555544 44555555555555544444211  234455555555


Q ss_pred             ecCCCCc
Q 009119          120 DCSSNQL  126 (543)
Q Consensus       120 ~l~~~~~  126 (543)
                      |+|....
T Consensus       226 DIS~~~~  232 (699)
T KOG3665|consen  226 DISRDKN  232 (699)
T ss_pred             ecccccc
Confidence            5555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.91  E-value=7.9e-06  Score=83.69  Aligned_cols=148  Identities=18%  Similarity=0.260  Sum_probs=75.0

Q ss_pred             CCccEEEcCCCcCc--cCChh-hccCCCCceeecccCcCCCC-CHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccE
Q 009119          380 GEITKLDLSRNSIQ--ELPPE-LSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI  455 (543)
Q Consensus       380 ~~L~~L~l~~~~l~--~l~~~-~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  455 (543)
                      .+|+.|++++...-  ..|.. -.-+|+|+.|.+++-.+... ....+.++|+|..||+++.+++.+  .+.+.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            46677777664321  12221 13456677777766554432 223345566677777766666655  33556666666


Q ss_pred             EEccCCcCCC-CCCCCCCCCCcCceeecCCCccccCch-------hhhccCCCcEEeCCCCcccc--ccccccCCCCCCe
Q 009119          456 LDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREAPT-------DILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTE  525 (543)
Q Consensus       456 L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~~~l~~l~~-------~~~~~~~L~~L~l~~~~l~~--l~~~l~~~~~L~~  525 (543)
                      |.+.+=.+.. .....+..+++|+.|++|.......+.       .-..+|.|+.||.||..+..  +...+..-|+|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            6665533322 122234456666666666654332111       11225666666666665541  2223344455555


Q ss_pred             EeCC
Q 009119          526 LDLS  529 (543)
Q Consensus       526 L~l~  529 (543)
                      +.+-
T Consensus       280 i~~~  283 (699)
T KOG3665|consen  280 IAAL  283 (699)
T ss_pred             hhhh
Confidence            5433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=3.4e-06  Score=73.04  Aligned_cols=99  Identities=24%  Similarity=0.286  Sum_probs=61.8

Q ss_pred             CCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCC-CccCCCCCccEEEc
Q 009119          380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDL  458 (543)
Q Consensus       380 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l  458 (543)
                      .+.+.|++-+|.+.+|. ....++.|+.|.|+-|+|+.+.+  +..|++|+.|+|..|.|.++.. +.+.++|+|+.|++
T Consensus        19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            45566677777776653 23567777777777777777655  5677777777777777766433 23567777777777


Q ss_pred             cCCcCCCCCC-----CCCCCCCcCceee
Q 009119          459 SYNIASLPEN-----PPFSSLPHLQELY  481 (543)
Q Consensus       459 ~~n~~~~~~~-----~~~~~~~~L~~L~  481 (543)
                      ..|.-....+     ..+..+|+|+.|+
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            7664322211     1234567777664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.49  E-value=5.4e-05  Score=65.51  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=15.4

Q ss_pred             CCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCC
Q 009119          402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (543)
Q Consensus       402 ~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n  437 (543)
                      ...|+.+++.+..++....  |..+++|+.|.++.|
T Consensus        42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDN   75 (260)
T ss_pred             ccchhhhhhhccceeeccc--CCCcchhhhhcccCC
Confidence            3444444444444443322  344455555555555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.21  E-value=0.00016  Score=62.66  Aligned_cols=61  Identities=20%  Similarity=0.314  Sum_probs=27.5

Q ss_pred             CCccEEEcCCCcCccCChhhccCCCCceeecccC--cCCCCCHHHhhCCCCCCEEEcCCCCCcc
Q 009119          380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRN--KIKDWPDAILTSLSSLSCLKLDNNPLRQ  441 (543)
Q Consensus       380 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~--~i~~~~~~~l~~~~~L~~L~L~~n~l~~  441 (543)
                      ..++.+++.++.++.+. .+..+++|++|.++.|  .+..-..-....+|+|+++++++|++..
T Consensus        43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence            34444444444444432 1334555566666555  3332111112334555555555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=5.4e-05  Score=65.84  Aligned_cols=81  Identities=23%  Similarity=0.241  Sum_probs=50.7

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch--h
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--A   86 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~--~   86 (543)
                      .++..|||.|+++++|.  +-+.            ++.|+.|.|+-|.|+.+ ..|..|++|++|.|..|.|.++.+  .
T Consensus        19 ~~vkKLNcwg~~L~DIs--ic~k------------Mp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~Y   83 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS--ICEK------------MPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEY   83 (388)
T ss_pred             HHhhhhcccCCCccHHH--HHHh------------cccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHH
Confidence            34455677777777643  2222            55677777777777666 446667777777777776665533  4


Q ss_pred             hhccCCCCEEEcCCCCCC
Q 009119           87 IGELHMLKSLDVSFNSIM  104 (543)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~  104 (543)
                      +.++++|+.|=|..|+..
T Consensus        84 LknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             HhcCchhhhHhhccCCcc
Confidence            556666666666666544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.48  E-value=0.0012  Score=66.79  Aligned_cols=132  Identities=21%  Similarity=0.172  Sum_probs=81.6

Q ss_pred             HHHHhhcCeeecCCCc-ccccchhhhhcccccCCCCccccccCccEEEcCcc-cc-cc----chHHhcCCCCCCEEEcCC
Q 009119            5 LKAARTSGSLNLSNRS-LRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHN-NI-EK----LKEDLRNLPLLTVLNVSH   77 (543)
Q Consensus         5 ~~~~~~~~~l~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~-~~----l~~~~~~~~~L~~L~l~~   77 (543)
                      .+..+.++.+.+.+.. +++..  +....         +.+++|+.|+++++ .. ..    .......+++|+++++++
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~--~~~~~---------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  252 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDS--LDALA---------LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG  252 (482)
T ss_pred             HhhCchhhHhhhcccccCChhh--HHHHH---------hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence            3445777777777653 44322  11111         22788999999873 21 11    123466789999999999


Q ss_pred             Cc-Cccc-chhh-hccCCCCEEEcCCCC-CC--CCChhhcccCCccEEecCCCCcc---cccccccCCCCCCEEEccCC
Q 009119           78 NK-LSEL-PAAI-GELHMLKSLDVSFNS-IM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNN  147 (543)
Q Consensus        78 ~~-l~~~-~~~~-~~~~~L~~L~l~~~~-~~--~l~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~  147 (543)
                      +. +++. -.++ ..|++|++|.+.++. ++  .+......++.|++|+++++...   .+.....++++++.+.+...
T Consensus       253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            87 5533 1233 348899999988777 45  33344567888999999988754   12233455777776655443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.35  E-value=0.001  Score=34.03  Aligned_cols=17  Identities=47%  Similarity=0.788  Sum_probs=9.2

Q ss_pred             CCeEeCCCCcCCcCCCC
Q 009119          523 LTELDLSDNNISALPPE  539 (543)
Q Consensus       523 L~~L~l~~~~~~~~~~~  539 (543)
                      |+.|+|++|+|+.+|+.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            45555555555555555

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.22  E-value=0.0022  Score=30.29  Aligned_cols=17  Identities=47%  Similarity=0.841  Sum_probs=7.9

Q ss_pred             CCCCeEeCCCCcCCcCC
Q 009119          521 TSLTELDLSDNNISALP  537 (543)
Q Consensus       521 ~~L~~L~l~~~~~~~~~  537 (543)
                      ++|+.|+|++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35666666666666554

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.18  E-value=0.0038  Score=33.48  Aligned_cols=23  Identities=52%  Similarity=0.834  Sum_probs=18.2

Q ss_pred             CCCCCeEeCCCCcCCcCCCCcCC
Q 009119          520 LTSLTELDLSDNNISALPPELVS  542 (543)
Q Consensus       520 ~~~L~~L~l~~~~~~~~~~~~~~  542 (543)
                      +++|+.|++++|+|+.+|++.|+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888888887764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.18  E-value=0.0038  Score=33.48  Aligned_cols=23  Identities=52%  Similarity=0.834  Sum_probs=18.2

Q ss_pred             CCCCCeEeCCCCcCCcCCCCcCC
Q 009119          520 LTSLTELDLSDNNISALPPELVS  542 (543)
Q Consensus       520 ~~~L~~L~l~~~~~~~~~~~~~~  542 (543)
                      +++|+.|++++|+|+.+|++.|+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888888887764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.16  E-value=0.0024  Score=32.61  Aligned_cols=19  Identities=58%  Similarity=0.838  Sum_probs=10.9

Q ss_pred             CcEEeCCCCcccccccccc
Q 009119          500 LRILDLSQNSLQSIPEGFK  518 (543)
Q Consensus       500 L~~L~l~~~~l~~l~~~l~  518 (543)
                      |++|++++|+++.+|..|.
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5566666666665555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.11  E-value=0.0014  Score=66.23  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=16.0

Q ss_pred             cCCccEEEcCCCc-Ccc--CChhhccCCCCceeeccc
Q 009119          379 AGEITKLDLSRNS-IQE--LPPELSSCASLQTLILSR  412 (543)
Q Consensus       379 ~~~L~~L~l~~~~-l~~--l~~~~~~~~~L~~L~l~~  412 (543)
                      ++.++.+.+.++. +++  +......++.|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            4555555555542 222  223344555555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.05  E-value=4.9e-05  Score=74.51  Aligned_cols=177  Identities=28%  Similarity=0.303  Sum_probs=100.6

Q ss_pred             cceeeeCCCCCCC-----CChhhhccCCccEEEcCCCcCcc-----CChhhccC-CCCceeecccCcCCCCCH----HHh
Q 009119          359 SKELSLEGMNLSA-----IPSEIWEAGEITKLDLSRNSIQE-----LPPELSSC-ASLQTLILSRNKIKDWPD----AIL  423 (543)
Q Consensus       359 l~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~~-~~L~~L~l~~~~i~~~~~----~~l  423 (543)
                      +..+.+.+|.+..     +...+...+.|..|++++|.+.+     +...+... ..+++|.+..|.++....    ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5566666665552     23334446677777777777664     11222222 456667777776665332    334


Q ss_pred             hCCCCCCEEEcCCCCCcccC----CCcc----CCCCCccEEEccCCcCCCCC----CCCCCCCCc-CceeecCCCcccc-
Q 009119          424 TSLSSLSCLKLDNNPLRQVP----SDGF----KDIPMLQILDLSYNIASLPE----NPPFSSLPH-LQELYLRRMQLRE-  489 (543)
Q Consensus       424 ~~~~~L~~L~L~~n~l~~~~----~~~~----~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~-L~~L~l~~~~l~~-  489 (543)
                      .....++.++++.|.+...+    ..++    ....++++|.+.+|.++...    ...+...++ +.+|++..|++.. 
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            45677777777777664211    1112    23556777777777655321    112344455 6667777776662 


Q ss_pred             ----Cchhhhcc-CCCcEEeCCCCccc-----cccccccCCCCCCeEeCCCCcCCc
Q 009119          490 ----APTDILRL-QQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNISA  535 (543)
Q Consensus       490 ----l~~~~~~~-~~L~~L~l~~~~l~-----~l~~~l~~~~~L~~L~l~~~~~~~  535 (543)
                          +...+..+ ..++.++++.|+++     .+.+.+..++.++++.+++|++.+
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                22333344 56677777777766     235566777777777777777653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.34  E-value=0.01  Score=27.97  Aligned_cols=15  Identities=60%  Similarity=0.822  Sum_probs=5.9

Q ss_pred             CCcEEeCCCCccccc
Q 009119          499 QLRILDLSQNSLQSI  513 (543)
Q Consensus       499 ~L~~L~l~~~~l~~l  513 (543)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            445555555554443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.31  E-value=0.00026  Score=69.50  Aligned_cols=180  Identities=24%  Similarity=0.263  Sum_probs=105.0

Q ss_pred             cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCcccccc-----chHHhcCC-CCCCEEEcCCCcCc---
Q 009119           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLS---   81 (543)
Q Consensus        11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~-~~L~~L~l~~~~l~---   81 (543)
                      +..+++.++.+.+-+......        .+...+.|+.|++++|.+..     +...+... ..++.|++..|.++   
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~--------~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g  160 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQ--------ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG  160 (478)
T ss_pred             HHHhhhhhCccccchHHHHHH--------HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence            456677777776444433332        12236677777777777661     22333333 55666777777665   


Q ss_pred             --ccchhhhccCCCCEEEcCCCCCC-----CCChhhc----ccCCccEEecCCCCccc-----ccccccCCCC-CCEEEc
Q 009119           82 --ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKE-----LPSSLGRCLN-LSDFKA  144 (543)
Q Consensus        82 --~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~----~~~~L~~L~l~~~~~~~-----~~~~~~~~~~-L~~L~l  144 (543)
                        .+.+.+..+.+++.++++.|.+.     .++..+.    ...++++|.+.+|.++.     +...+...+. +..+++
T Consensus       161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l  240 (478)
T KOG4308|consen  161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL  240 (478)
T ss_pred             hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence              33456666777777777777664     1223333    46677777777777661     1123344444 566777


Q ss_pred             cCCcCccC-----CcccccC-CCccEEEecCCcccccch----hhhcccccccEEECCCCcCCc
Q 009119          145 SNNCITSL-----PEDLADC-SKMSKLDVEGNKLTVLSN----NLIASWTMLTELIASKNLLNG  198 (543)
Q Consensus       145 ~~~~~~~i-----~~~~~~~-~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~  198 (543)
                      ..|.+.+.     ...+... ..+++++++.|.+.....    ..+..++.++++.+..|.+..
T Consensus       241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            77766532     2334444 667788888887764332    224445677788888887754

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.72  E-value=0.003  Score=52.74  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=41.0

Q ss_pred             CCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcC-CCCCCCCC-CCCCcCceeecCCC-ccccC-chhhhccCCCcEE
Q 009119          428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA-SLPENPPF-SSLPHLQELYLRRM-QLREA-PTDILRLQQLRIL  503 (543)
Q Consensus       428 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~-~~~~~L~~L~l~~~-~l~~l-~~~~~~~~~L~~L  503 (543)
                      .++.++-+++.|..++.+.+..+++++.|.+.+|.- .+.....+ .-.++|+.|++++| +|+.. -..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            345556666666666655566666666666665431 11100001 13466666666666 56632 1234455666666


Q ss_pred             eCCC
Q 009119          504 DLSQ  507 (543)
Q Consensus       504 ~l~~  507 (543)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            6554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.15  E-value=0.0013  Score=55.87  Aligned_cols=87  Identities=22%  Similarity=0.256  Sum_probs=52.1

Q ss_pred             HhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEE
Q 009119           63 DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDF  142 (543)
Q Consensus        63 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  142 (543)
                      .+..+...+.||++.|++..+...|+-++.|..|+++.+.+.-+|..+++...+..++...|.....|.+++..+.++++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            35555556666666665555544555555666666666666666666666666666666666666666666666666666


Q ss_pred             EccCCcC
Q 009119          143 KASNNCI  149 (543)
Q Consensus       143 ~l~~~~~  149 (543)
                      +..++.+
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            6665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.06  E-value=0.0018  Score=55.17  Aligned_cols=84  Identities=20%  Similarity=0.254  Sum_probs=39.8

Q ss_pred             hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEe
Q 009119           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV  167 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l  167 (543)
                      ......+.||++.|.+..+-..+..++.+..++++.+++..+|..++....+.+++...|+.+..|.++...+++++++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            33444444444444444443444444444444554444444444444444444444444444444444444455555444


Q ss_pred             cCCc
Q 009119          168 EGNK  171 (543)
Q Consensus       168 ~~~~  171 (543)
                      .++.
T Consensus       119 k~~~  122 (326)
T KOG0473|consen  119 KKTE  122 (326)
T ss_pred             ccCc
Confidence            4444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.20  E-value=0.033  Score=46.72  Aligned_cols=83  Identities=23%  Similarity=0.098  Sum_probs=53.4

Q ss_pred             CCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcc-cCCCcc-CCCCCccEEEccCC-cCCCCCCCCCCCCCcCcee
Q 009119          404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ-VPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL  480 (543)
Q Consensus       404 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~~-~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L  480 (543)
                      .++.++-+++.|..+...-+.++++++.|.+.+|.-.+ ...+.+ +-.++|+.|++++| .+++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            46677777777777777777777777777777775332 110111 13467888888865 4555555556777888887


Q ss_pred             ecCCCc
Q 009119          481 YLRRMQ  486 (543)
Q Consensus       481 ~l~~~~  486 (543)
                      .+.+-.
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            777653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.99  E-value=0.19  Score=26.70  Aligned_cols=21  Identities=38%  Similarity=0.634  Sum_probs=10.6

Q ss_pred             CCCCEEEcCCCCCcccCCCcc
Q 009119          427 SSLSCLKLDNNPLRQVPSDGF  447 (543)
Q Consensus       427 ~~L~~L~L~~n~l~~~~~~~~  447 (543)
                      ++|++|+|++|++..++...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555544433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.99  E-value=0.19  Score=26.70  Aligned_cols=21  Identities=38%  Similarity=0.634  Sum_probs=10.6

Q ss_pred             CCCCEEEcCCCCCcccCCCcc
Q 009119          427 SSLSCLKLDNNPLRQVPSDGF  447 (543)
Q Consensus       427 ~~L~~L~L~~n~l~~~~~~~~  447 (543)
                      ++|++|+|++|++..++...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555544433

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.53  E-value=0.19  Score=26.56  Aligned_cols=18  Identities=44%  Similarity=0.803  Sum_probs=13.8

Q ss_pred             CCCCeEeCCCCcCCcCCC
Q 009119          521 TSLTELDLSDNNISALPP  538 (543)
Q Consensus       521 ~~L~~L~l~~~~~~~~~~  538 (543)
                      ++|+.|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            467788888888888776

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.88  E-value=0.24  Score=25.71  Aligned_cols=15  Identities=47%  Similarity=0.643  Sum_probs=7.9

Q ss_pred             CCCCCeEeCCCCcCC
Q 009119          520 LTSLTELDLSDNNIS  534 (543)
Q Consensus       520 ~~~L~~L~l~~~~~~  534 (543)
                      +++|+.|+|++|+|+
T Consensus         1 ~~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    1 NPNLETLDLSNNQIT   15 (24)
T ss_dssp             -TT-SEEE-TSSBEH
T ss_pred             CCCCCEEEccCCcCC
Confidence            356667777777665

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.09  E-value=0.8  Score=24.37  Aligned_cols=16  Identities=56%  Similarity=0.787  Sum_probs=11.0

Q ss_pred             CCCCeEeCCCCcCCcC
Q 009119          521 TSLTELDLSDNNISAL  536 (543)
Q Consensus       521 ~~L~~L~l~~~~~~~~  536 (543)
                      ++|+.|++++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            5677777777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	543
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		5e-09
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-08
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		2e-08
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-04
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		1e-06
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		2e-06
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		4e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		4e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		6e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-06
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-06
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		7e-06
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		8e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		8e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		1e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-05
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		3e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		9e-04
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		3e-05
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		3e-05
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		3e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		3e-05
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		5e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		8e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		8e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		9e-05
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		9e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		1e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		2e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		3e-04
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		2e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		2e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		4e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		4e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		4e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		4e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		5e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		6e-04
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		8e-04
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		8e-04
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		9e-04

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           LD+   ++  +S N I  +  LT L  + N L  +P  I +LS L  LDL  NR+ S+P+
Sbjct: 229 LDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            +  C  L  FY  +N ++ LP E G L  L  L +  N L++
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 10/203 (4%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL---SRNSI 392
           N  +    + + L  + + +   +K+L L+   LS++PS+ +    +TKL L   + N +
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKL 73
Query: 393 QELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 451
           Q LP  +     +L+TL ++ NK++  P  +            D N L+ +P   F  + 
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXX-XXXXXXXXSQNS 509
            L  L L YN + SLP+   F  L  L+EL L   QL+  P                 N 
Sbjct: 134 KLTYLSLGYNELQSLPKG-VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 510 LQSIPEG-FKNLTSLTELDLSDN 531
           L+ +PEG F +L  L  L L +N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 12/232 (5%)
Query: 46  DLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
           D   L L +N+I +L K+D + L  L  L + +NK+S++   A   L  L+ L +S N +
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCI--TSLPEDLADCS 160
           ++IP  + S+  LV+     N+++++P  +   L N++  +   N +  +       D  
Sbjct: 115 VEIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRI 219
           K++ L +   KLT +  +L  +   L EL    N +  +  E +   S+L RL L  N+I
Sbjct: 173 KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 220 LSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
             I   S+S   +L E ++ NN LS +PA L  L  L  + LH+N + +  V
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 337 EDSEASTTKEDLITMATRLSVTSKEL-SLEGM--NLSAIPS--EIWEAGEITKLDLSRNS 391
           +D+ A T K +L   +   +VT  EL S++ +  N S I S   I     +  L L  N 
Sbjct: 15  DDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK 74
Query: 392 IQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 451
           + ++   L    +L  LIL+ N+++  P+ +              N L+ +P   F  + 
Sbjct: 75  LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133
Query: 452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSL 510
            L  L+L++N + SLP+   F  L +L EL L                       S N L
Sbjct: 134 NLTYLNLAHNQLQSLPKGV-FDKLTNLTELDL-----------------------SYNQL 169
Query: 511 QSIPEG-FKNLTSLTELDLSDNNISALP 537
           QS+PEG F  LT L +L L  N + ++P
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVP 197

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXX 504
             K++  L  L L+ N + SLP N  F  L +L+EL L   QL+  P             
Sbjct: 80  ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 505 X-SQNSLQSIPEG-FKNLTSLTELDLSDNNISALP 537
             + N LQS+P+G F  LT+LTELDLS N + +LP
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 34/229 (14%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L++ +NN++ L  DL   PLL  L VS+N+L +LP  +     LK +DV  NS+ K+
Sbjct: 113 LKSLLVDNNNLKALS-DLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL 168
Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
           PD   S   +      +NQL+ELP  L     L+   A NN +  LP DL        L 
Sbjct: 169 PDLPPSLEFIA---AGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP-DLP-------LS 216
Query: 167 VEGNKLTVLSNNL------IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL 220
           +E     V  NN+      + +   LT + A  NLL  +P+   SL  L   D +   + 
Sbjct: 217 LES---IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP 273
Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            +P S++        + G   LS LP        L  L+  SN+++  C
Sbjct: 274 ELPQSLTFLDVSENIFSG---LSELPP------NLYYLNASSNEIRSLC 313

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 42/207 (20%)
Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L+VS N+L+ LPA   EL  L + +    S+  +P      + L +   S NQL 
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP------SGLQELSVSDNQLA 194
Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   A  S + +L V GN+LT L            
Sbjct: 195 SLPTLPS---ELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTSLPV---------- 238
Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
                      +P      S L  L +  NR+ S+P   SG  SL+ +    N L+ LP 
Sbjct: 239 -----------LP------SELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPE 278
Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQ 274
            L  LS   T++L  N L E  ++A +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALR 305

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           + P E      +V+  CS+  LK LP  + R  ++++     N  T +P++L++   ++ 
Sbjct: 3   RCPTECTCLDTVVR--CSNKGLKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTL 58
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           +D+  N+++ LSN   ++ T L  LI S N L  + P T   L  L  L LH N I  +P
Sbjct: 59  IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 224 -SSISGCCSLAEFYMGNNAL 242
             + +   +L+   +G N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDL 214
           L + + ++ L + GN+L  L N +    T L EL+  +N L  +P+ +   L+ L  L L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 215 HQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           + N++ S+P  +     +L    + NN L +LP     KL++L  L L+ NQLK
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 418
           + L+L G  L  I S + E   +T L L+ N +Q LP        +L+ L+L  N+++  
Sbjct: 66  RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 419 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
           PD +             +N L+ +P   F  +  L  LDL  N + SLPE   F  L  L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG-VFDKLTQL 183
Query: 478 QELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 531
           ++L L                       + N L+S+P+G F  LTSLT + L +N
Sbjct: 184 KQLSL-----------------------NDNQLKSVPDGVFDRLTSLTHIWLLNN 215

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 92/199 (46%), Gaps = 29/199 (14%)
Query: 70  LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-- 124
           L  LNVS N L + P  +    +L+ L+ LD+S NSI        S   +V +  S    
Sbjct: 128 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 178
Query: 125 QLKELPSS---------LGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTV 174
           +LK L  S         + RC+NL     +SNN  T +P  L DCS +  LD+ GNKL+ 
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SL 232
             +  I++ T L  L  S N   G P     L  L  L L +N+    IP  +SG C +L
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 233 AEFYM-GNNALSALPAELG 250
               + GN+   A+P   G
Sbjct: 297 TGLDLSGNHFYGAVPPFFG 315

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 27/198 (13%)
Query: 70  LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-- 124
           L  LNVS N L + P  +    +L+ L+ LD+S NSI        S   +V +  S    
Sbjct: 125 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 175
Query: 125 QLKELPSS---------LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           +LK L  S         + RC+NL     S+N  ++    L DCS +  LD+ GNKL+  
Sbjct: 176 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 235
Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SLA 233
            +  I++ T L  L  S N   G P     L  L  L L +N+    IP  +SG C +L 
Sbjct: 236 FSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 234 EFYM-GNNALSALPAELG 250
              + GN+   A+P   G
Sbjct: 295 GLDLSGNHFYGAVPPFFG 312

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 30/186 (16%)
Query: 385 LDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVP 443
           L LSRN I+ +     +  A+L TL L  N++   P+               NNP+  +P
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152
Query: 444 SDGFKDIPMLQILDLS--YNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXX 501
           S  F  IP L+ LDL     ++ + E   F  L +L+ L L    LRE P          
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLREIPNLTPLIKLDE 211
Query: 502 XXXXSQNSLQSIPEG-------------------------FKNLTSLTELDLSDNNISAL 536
               S N L +I  G                         F NL SL E++L+ NN++ L
Sbjct: 212 LDL-SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
Query: 537 PPELVS 542
           P +L +
Sbjct: 271 PHDLFT 276

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 93/234 (39%), Gaps = 27/234 (11%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 394
           N+ S+   T+  L  +   +   ++ L+L   N+  I ++ +     +  L L RNSI++
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 395 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 453
           +     +  ASL TL L  N +   P                NNP+  +PS  F  +P L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 454 QILDLS----------------YNI-------ASLPENPPFSSLPHLQELYLRRMQLREA 490
             LDL                 +N+        ++ + P  + L  L+EL +      E 
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233
Query: 491 PTXXXXXXXXXXXXXSQNSLQSIPE--GFKNLTSLTELDLSDNNISALPPELVS 542
                            NS  S+ E   F  L SL EL+L+ NN+S+LP +L +
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 140 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199
           ++ + ++  +TS+P  +   S  ++L++E NKL  L + +    T LT+L  S+N +  +
Sbjct: 10  TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67
Query: 200 PETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLG 256
           P+ +   L++L  L LH+N++ S+P+ +      L E  +  N L ++P     +L+ L 
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 257 TLDLHSNQLKEYC 269
            + LH+N     C
Sbjct: 128 KIWLHTNPWDCSC 140

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
           +E     + L ++ T +  ++  L LE   L ++P  +++   ++TKL LS+N IQ LP 
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 398 E-LSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQIL 456
                   L  L L  NK++  P+ +            D N L+ VP   F  +  LQ +
Sbjct: 70  GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Query: 457 DLSYN 461
            L  N
Sbjct: 130 WLHTN 134

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSR 208
           TS+P  +   ++ + LD+E N L  L N +    T LT+L    N L  +P  +   L+ 
Sbjct: 20  TSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 209 LIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           L  L+L  N++ S+P+ +      L E  +  N L +LP     KL++L  L L+ NQLK
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXX 429
           +A PS+   +G  T +D        +P  + + A  Q L L  N+I      +       
Sbjct: 11  AACPSQCSCSG--TTVDCRSKRHASVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINL 66
Query: 430 XXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE 489
                 +N L  +P   F  +  L +LDL  N  ++  +  F  L HL+EL++   +L E
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 490 APTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 531
            P               QN L+SIP G F  L+SLT   L  N
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  S NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 341

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44  AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
           A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L +S
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 155
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
            N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   LA 
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 209
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
              + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +DL  
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 263
Query: 217 NRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 32  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 92  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 97  DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED 155
           D S   + ++PD++   T +   + + NQL+ LP++   R   L+      N I+ L  +
Sbjct: 15  DCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Query: 156 LADCSKMSKLDV---EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIR 211
           L  C K+  L V   + N+L+ LS+   A  T LTEL    N +  +          LI 
Sbjct: 73  L--CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 212 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE---LGKLSKLGTLDLHSNQLKE 267
           LDL  N + S    +     +L E  + NN + AL +E   +   S L  L+L SNQ+KE
Sbjct: 131 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 190
Query: 268 Y---CVEA 272
           +   C  A
Sbjct: 191 FSPGCFHA 198

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44  AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
           A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L +S
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 149
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
            N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   LA 
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 203
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
              + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +DL  
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 257
Query: 217 NRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
           + L  + T L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
           SL +L+L  NKI + P ++            + N +  +  D F+D+  L +L L  N  
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
                  FS L  +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 37  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 97  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
           + L  + T L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
           SL +L+L  NKI + P ++            + N +  +  D F+D+  L +L L  N  
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
                  FS L  +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 378 EAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDN 436
           EA  +   DLS++ I  L     S    L+ L L++N+I    D                
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 491
           N L  + S  F+++  L++LDLSYN      +  F  LP+L+EL L   QL+  P
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 145/335 (43%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  S NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 340

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 29/235 (12%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 394
           N+ S    T+ +L  +   + V ++ L+L+  ++  I ++ ++    +  L LS+N +++
Sbjct: 14  NQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK 73
Query: 395 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 453
           +     +   SL TL L  N++   P                NNP+  +PS  F  +P L
Sbjct: 74  IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 454 QILDL-----------------------SYNIASLPENPPFSSLPHLQELYL--RRMQLR 488
           + LDL                       +  + +L + P  ++L  L+EL L   R+ L 
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI 193
Query: 489 EAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELVS 542
             P                  + +I    F +L SL EL+LS NN+ +LP +L +
Sbjct: 194 R-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT 247

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 29/235 (12%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 394
           N+ S    T+ +L  +   + V ++ L+L+  ++  I ++ ++    +  L LS+N +++
Sbjct: 14  NQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK 73
Query: 395 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 453
           +     +   SL TL L  N++   P                NNP+  +PS  F  +P L
Sbjct: 74  IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 454 QILDL-----------------------SYNIASLPENPPFSSLPHLQELYL--RRMQLR 488
           + LDL                       +  + +L + P  ++L  L+EL L   R+ L 
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI 193
Query: 489 EAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELVS 542
             P                  + +I    F +L SL EL+LS NN+ +LP +L +
Sbjct: 194 R-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT 247

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 58  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 116
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 154
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 206

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 145/335 (43%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 62  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 119
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 120 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LAN 174
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 175 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 232
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 233 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 263
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 264 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 310
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  + NK+ D
Sbjct: 311 TYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD 344

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 485 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 536
                                + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 130 -------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 485 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 536
                                + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 130 -------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 41  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 99  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 153
Query: 485 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 536
                                + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 154 -------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 63  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 120
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 121 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LAN 175
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 176 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 233
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 234 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 264
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 265 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 311
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 345

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 30/176 (17%)
Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIX 423
           E +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D   
Sbjct: 16  EELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 73
Query: 424 XXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYL 482
                        NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL +
Sbjct: 74  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV 132
Query: 483 RRMQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 536
                                  + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 133 -----------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 19  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                      NP++ +    F  +  LQ ++ L  N+ASL EN P   L  L+EL +  
Sbjct: 77  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 485 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 536
                                + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 134 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 340

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 68/176 (38%), Gaps = 51/176 (28%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 428
           S  P+     G +  L L R  +QEL P L    A+LQ L L                  
Sbjct: 94  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 136
Query: 429 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 487
                  +N L+ +P D F+D+  L  L L  N I+S+PE   F  L  L  L L     
Sbjct: 137 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 184
Query: 488 REAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELVS 542
                              QN +  + P  F++L  L  L L  NN+SALP E ++
Sbjct: 185 -------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 221

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 68/176 (38%), Gaps = 51/176 (28%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 428
           S  P+     G +  L L R  +QEL P L    A+LQ L L                  
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 137
Query: 429 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 487
                  +N L+ +P D F+D+  L  L L  N I+S+PE   F  L  L  L L     
Sbjct: 138 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 185
Query: 488 REAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELVS 542
                              QN +  + P  F++L  L  L L  NN+SALP E ++
Sbjct: 186 -------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 19  LNFYKIPDNL--PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL +  
Sbjct: 77  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 485 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 536
                                + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 134 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 18  LNFYKIPDNL--PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 75
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL +  
Sbjct: 76  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 132
Query: 485 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 536
                                + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 133 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 30/174 (17%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL +  
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 131
Query: 485 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 536
                                + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 132 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	543
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-52
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-43
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-50
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-48
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-42
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-38
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-43
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-45
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-44
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-42
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-41
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-40
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-32
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-37
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-32
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-34
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-30
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-33
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-32
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-31
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-30
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-28
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-30
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-28
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-20
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-26
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-21
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-18
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-18
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-22
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-20
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-21
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-17
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-19
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-18
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-18
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-15
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	7e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	6e-04

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  232 bits (594), Expect = 2e-67
 Identities = 84/541 (15%), Positives = 167/541 (30%), Gaps = 87/541 (16%)

Query: 47  LQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  L LA    +    + +  L  L VL+   +  +      G+  +   +       ++
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 106 I---PDEIGSATALVKFDCSSNQLKELP------SSLGRCLNLSDFKASNNCITSLPEDL 156
           +      +     L   D   + +   P            L  +      N IT + + +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
              +K+  +    +  T  +  +                      +  +L  L  ++L+ 
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA----KQYENEELSWSNLKDLTDVELYN 500

Query: 217 NRIL-SIPSSISGCCSLAEFYMGNNALS----------ALPAELGKLSKLGTLDLHSNQL 265
              +  +P  +     L    +  N              L  +     K+    +  N L
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 266 KEYCVEA--CQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           +E+   A   ++  L +LD  +N +  L    G    L  L L  N +  +         
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCA--- 616

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG-- 380
                 +                                L      L  IP+        
Sbjct: 617 --FTDQVE------------------------------GLGFSHNKLKYIPNIFNAKSVY 644

Query: 381 EITKLDLSRNSIQELPPELSS------CASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
            +  +D S N I      +S         +  T+ LS N+I+ +P  +  + S +S + L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 435 DNNPLRQVPSDGFKDIP-------MLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
            NN +  +P +  K          +L  +DL +N + SL ++   ++LP+L  + +    
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 487 LREAPTDILRLQQLRILDLSQNS-------LQSIPEGFKNLTSLTELDLSDNNISALPPE 539
               PT  L   QL+   +           L+  P G     SL +L +  N+I  +  +
Sbjct: 765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK 824

Query: 540 L 540
           L
Sbjct: 825 L 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  189 bits (482), Expect = 4e-52
 Identities = 80/498 (16%), Positives = 167/498 (33%), Gaps = 90/498 (18%)

Query: 64  LRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
           L N   +T L+++       +P AIG+L  LK L    +S        G           
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 123 SNQLKEL---PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
                 +      L     L+      + I   PE +    K S++ ++  ++  L+N +
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-MKPIKKDSRISLKDTQIGNLTNRI 437

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
                              + + I  L++L  +    +       ++    + +++    
Sbjct: 438 -----------------TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY---A 477

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
                       L  L  ++L++                       +++ LP  +  +  
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNC---------------------PNMTQLPDFLYDLPE 516

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           L+ L +  N   +      +           +RL             D      ++    
Sbjct: 517 LQSLNIACNRGISAAQLKAD----------WTRLA------------DDEDTGPKI---- 550

Query: 360 KELSLEGMNLSAIPSE--IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           +   +   NL   P+   + +  ++  LD   N ++ L     +   L  L L  N+I++
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEE 609

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IASLPEN----PPF 471
            P+        +  L   +N L+ +P+    K + ++  +D SYN I S   N       
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 472 SSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG--------FKNLTS 522
               +   + L   ++++ PT++      +  + LS N + SIPE         +KN   
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 523 LTELDLSDNNISALPPEL 540
           LT +DL  N +++L  + 
Sbjct: 730 LTTIDLRFNKLTSLSDDF 747

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  188 bits (478), Expect = 2e-51
 Identities = 75/474 (15%), Positives = 167/474 (35%), Gaps = 57/474 (12%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           LQ  I  +  ++ +K+D R     T +    N+++ +  AI  L  L+ +  + +     
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKL 165
              +            + Q +    S     +L+D +  +   +T LP+ L D  ++  L
Sbjct: 464 NIAVDW---EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 166 DVEGNKLTVLSN---------NLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDL 214
           ++  N+    +          +   +   +       N L   P   ++  + +L  LD 
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

Query: 215 HQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK-LSKLGTLDLHSNQLKE--YCVE 271
             N++  + +       L +  +  N +  +P +      ++  L    N+LK       
Sbjct: 581 VHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639

Query: 272 ACQLR-LSVLDLSNNSLSGLPPEIG------KMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           A  +  +  +D S N +      I       K      + L+ N ++   + L    +P 
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP- 698

Query: 325 LLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
            +  +       + +PEN         ++   +          + L    L+++  +   
Sbjct: 699 -ISTIILSNNLMTSIPENSLKPKDGNYKNTYLL--------TTIDLRFNKLTSLSDDFRA 749

Query: 379 AG--EITKLDLSRNSIQELPPELSSCASLQTLILSRNKI-------KDWPDAILTSLSSL 429
                ++ +D+S N     P +  + + L+   +   +        + WP  I T+  SL
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI-TTCPSL 808

Query: 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR 483
             L++ +N +R+V        P L ILD++ N          S  P+++     
Sbjct: 809 IQLQIGSNDIRKVDEKLT---PQLYILDIADN--PNISIDVTSVCPYIEAGMYV 857

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 31/268 (11%), Positives = 74/268 (27%), Gaps = 56/268 (20%)

Query: 276 RLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           R++ L L+     G +P  IG++T L+ L    +          +      +   R    
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394
                +     +  +     LS   ++       +  I  +   + + T++    N I  
Sbjct: 384 RMHYKKMFLDYDQRLN----LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454
           +   +     LQ +  + +       A+                               +
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVD-----------------------------WE 470

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP 514
             +  Y      E   +S+L  L ++ L                       +  ++  +P
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELY----------------------NCPNMTQLP 508

Query: 515 EGFKNLTSLTELDLSDNNISALPPELVS 542
           +   +L  L  L+++ N   +       
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKAD 536

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 3e-17
 Identities = 22/171 (12%), Positives = 52/171 (30%), Gaps = 20/171 (11%)

Query: 372 IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430
              ++   G +T L L+    +  +P  +     L+ L    +              +  
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 431 CLKLDNNPLRQVPSDGFKDIP-MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE 489
             +   + +R      F D    L + DL  +  ++  NP    +     + L+  Q+  
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD--AINRNPEMKPIKKDSRISLKDTQI-- 430

Query: 490 APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
                             N +  I +  + LT L  +  +++  +     +
Sbjct: 431 --------------GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  222 bits (568), Expect = 2e-65
 Identities = 99/565 (17%), Positives = 189/565 (33%), Gaps = 64/565 (11%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +    ++ L  VP+++  +                + + L+ N ++ L      N  
Sbjct: 12  PNITYQCMDQKLSKVPDDIPSS---------------TKNIDLSFNPLKILKSYSFSNFS 56

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQL 126
            L  L++S  ++  +   A   LH L +L ++ N I           T+L        +L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 127 KELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L S  +G+ + L     ++N I S  LP   ++ + +  +D+  N +  ++ N +   
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAE--- 234
                    L  S N ++ + +      +L  L L  N   S  + + +     L     
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 235 ---FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLDLSNNS 286
               +     L       +  L  +   +       ++  +     C   +S + L+  S
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRS-SLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           +  L   + K    + L +    L+   +  L        LK L   + +   S      
Sbjct: 297 IKYLED-VPKHFKWQSLSIIRCQLKQFPTLDLPF------LKSLTLTMNKGSISFKKVAL 349

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK---LDLSRNSIQELPPELSSC 402
             L             L L    LS      +          LDLS N    +       
Sbjct: 350 PSL-----------SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 403 ASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             LQ L    + +K     +   SL  L  L +     +      F  +  L  L ++ N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 518
                  +  F++  +L  L L + QL +    +   L +L++L++S N+L  +    + 
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 519 NLTSLTELDLSDNNISALPPELVSV 543
            L SL+ LD S N I      L   
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  201 bits (512), Expect = 2e-57
 Identities = 104/516 (20%), Positives = 177/516 (34%), Gaps = 67/516 (12%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI- 103
           L  LIL  N I+         L  L  L     KL+ L +  IG+L  LK L+V+ N I 
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 104 -MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-----NLSDFKASNNCITSLPEDLA 157
             K+P    + T LV  D S N ++ +  +  + L            S N I  + +   
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 158 DCSKMSKLDVEGNKL-TVLSNNLIASWTMLTELIASKNLLNGM-------PETIGSLSRL 209
              K+ +L + GN   + +    + +   L                    P  +  L  +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 210 --IRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
                 L      S          +++   +   ++  L  ++ K  K  +L +   QLK
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK 320

Query: 267 EYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS-SLVNGPTPA 324
           +       L  L  L L+ N  S    ++  + +L  L L+ N L      S  +  T +
Sbjct: 321 Q--FPTLDLPFLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           L                                  + L L       + +      E+  
Sbjct: 378 L----------------------------------RHLDLSFNGAIIMSANFMGLEELQH 403

Query: 385 LDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           LD   ++++ +       S   L  L +S    K   D I   L+SL+ LK+  N  +  
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 443 -PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQ 499
             S+ F +   L  LDLS   +  +     F +L  LQ L +    L    +     L  
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 500 LRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 534
           L  LD S N +++          SL   +L++N+++
Sbjct: 523 LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  169 bits (430), Expect = 6e-46
 Identities = 83/496 (16%), Positives = 160/496 (32%), Gaps = 51/496 (10%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           +L L+   ++      +                 L+ L+     +  L+   +  L  L 
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTS------------LENLVAVETKLASLESFPIGQLITLK 131

Query: 72  VLNVSHNKLSEL--PAAIGELHMLKSLDVSFNSIMKIPDEI-----GSATALVKFDCSSN 124
            LNV+HN +     PA    L  L  +D+S+N I  I          +    +  D S N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 125 QLKELPSSLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
            +  +     + + L +     N  +S  +   L + + +    +   +     N  I  
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 183 WTMLTELIASK---------NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            +++  L             N  +        L+ +  + L    I  +   +       
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQ 310

Query: 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP- 292
              +    L   P     L  L +L L  N+      +     LS LDLS N+LS     
Sbjct: 311 SLSIIRCQLKQFPT--LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 293 --EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350
                   +LR L L+ N    + ++ +       L++L      +       T+     
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE---LQHLD--FQHSTLK--RVTEFSAFL 421

Query: 351 MATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSCASLQT 407
              +L      L +   N       I+     +  L ++ NS ++       ++  +L  
Sbjct: 422 SLEKL----LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
           L LS+ +++     +  +L  L  L + +N L  + S  +  +  L  LD S+N     +
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 468 NPPFSSLPHLQELYLR 483
                    L    L 
Sbjct: 538 GILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (285), Expect = 8e-27
 Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 12/194 (6%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNK 414
            V +         LS +P +I        +DLS N ++ L     S+ + LQ L LSR +
Sbjct: 10  VVPNITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE 67

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           I+   D     L  LS L L  NP++      F  +  L+ L      +ASL    P   
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF-PIGQ 126

Query: 474 LPHLQELYLRRMQLREA--PTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLT----EL 526
           L  L++L +    +     P     L  L  +DLS N +Q+I     + L         L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 527 DLSDNNISALPPEL 540
           D+S N I  +  + 
Sbjct: 187 DMSLNPIDFIQDQA 200

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.7 bits (197), Expect = 7e-16
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 9/127 (7%)

Query: 419 PDAILTSLSSLSCLKLD--NNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLP 475
           P ++   +  +  +     +  L +VP D        + +DLS+N +  L     FS+  
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLSKVPDDIPSS---TKNIDLSFNPLKILKSYS-FSNFS 56

Query: 476 HLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 533
            LQ L L R ++          L  L  L L+ N +QS   G F  LTSL  L   +  +
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 534 SALPPEL 540
           ++L    
Sbjct: 117 ASLESFP 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  222 bits (567), Expect = 1e-64
 Identities = 118/524 (22%), Positives = 211/524 (40%), Gaps = 56/524 (10%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
           V  +    +H  + ++ +DL     +TVLN++HN+L  L  A       L SLDV FN+I
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 104 MKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCS 160
            K+ P+       L   +   N+L +L   +   C NL++    +N I  +  +      
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE---TIGSLSRLIRLDLHQN 217
            +  LD+  N L+            L EL+ S N +  +      I + S L +L+L  N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 218 RILSI-PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQLKEYCVEA 272
           +I    P        L   ++ N  L     E        + +  L L ++QL       
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 273 ----CQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
                   L++LDLS N+L+ +  +    +  L    L  N ++ L S  ++G     ++
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF--NVR 299

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLD 386
           YL                         L  +  + S+   +L  I          +  L+
Sbjct: 300 YLN------------------------LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 387 LSRNSIQELPPE-LSSCASLQTLILSRN--KIKDWPDAILTSL--SSLSCLKLDNNPLRQ 441
           +  N I  +     +   +L+ L LS +   ++   +    SL  S L  L L  N + +
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQ 499
           + SD F  +  L++LDL  N I        +  L ++ E+YL   +  +   +    +  
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 500 LRILDLSQNSLQSIPEG---FKNLTSLTELDLSDNNISALPPEL 540
           L+ L L + +L+++      F+ L +LT LDLS+NNI+ +  ++
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  212 bits (542), Expect = 4e-61
 Identities = 118/538 (21%), Positives = 209/538 (38%), Gaps = 53/538 (9%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM 104
           L+ L L HN + +L +        LT L++  N + ++      +   L +LD+S N + 
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

Query: 105 KIPDE-IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA---SNNCITSL-PEDLADC 159
                       L +   S+N+++ L S        S  K    S+N I    P      
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 160 SKMSKLDVEGNKLTVLSNNLIA---SWTMLTELIASKNLLNGMPETIGS---LSRLIRLD 213
            ++  L +   +L       +    + T +  L  S + L+    T       + L  LD
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 214 LHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE 271
           L  N +  +   S +    L  F++  N +  L    L  L  +  L+L  +  K+    
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 272 -----------ACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL--RTLRSSL 317
                           L  L++ +N + G+   +   +  L+ L L+ +    RTL +  
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI--PSE 375
                 + L  L   L +N+ S     + D  +    L    + L L    +       E
Sbjct: 375 FVSLAHSPLHILN--LTKNKIS---KIESDAFSWLGHL----EVLDLGLNEIGQELTGQE 425

Query: 376 IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDA--ILTSLSSLSCL 432
                 I ++ LS N   +L     +   SLQ L+L R  +K+   +      L +L+ L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN-------PPFSSLPHLQELYLRR 484
            L NN +  +  D  + +  L+ILDL +N +A L ++            L HL  L L  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 485 MQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 540
               E P ++ + L +L+I+DL  N+L ++P   F N  SL  L+L  N I+++  ++
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  172 bits (439), Expect = 7e-47
 Identities = 104/538 (19%), Positives = 190/538 (35%), Gaps = 59/538 (10%)

Query: 47  LQKLILAHNNIEKL-KEDLRNLPL--LTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNS 102
           LQ+L+L++N I+ L  E+L       L  L +S N++ E  P     +  L  L ++   
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 103 IMK-IPDEIGSA---TALVKFDCSSNQLKELPSSLGRCL---NLSDFKASNNCITSLPED 155
           +   + +++      T++     S++QL    ++    L   NL+    S N +  +  D
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 156 -LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM----------PETIG 204
             A   ++    +E N +  L ++ +     +  L   ++                 +  
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 205 SLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPAELGKLSKLG-----TL 258
            L  L  L++  N I  I  +  +G  +L    + N+  S           L       L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 259 DLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLR 314
           +L  N++ +   +A      L VLDL  N +       E   +  + ++ L+ N    L 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
            +         L+ L   L          +          L      L L   N++ I  
Sbjct: 447 RNSFALVP--SLQRLM--LRRVALKN-VDSSPSPFQPLRNL----TILDLSNNNIANIND 497

Query: 375 EIWEA-GEITKLDLSRNSIQELPPE---------LSSCASLQTLILSRNKIKDWPDAILT 424
           ++ E   ++  LDL  N++  L            L   + L  L L  N   + P  +  
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            L  L  + L  N L  +P+  F +   L+ L+L  N I S+ +     +  +L EL +R
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 484 RMQLREAPTDI------LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535
                     I      +      I +LS + L + P  +     +   D S    SA
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF-PVRLFDTSSCKDSA 674

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (291), Expect = 2e-27
 Identities = 59/276 (21%), Positives = 100/276 (36%), Gaps = 46/276 (16%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C +   V D S+  L+ +P ++   T +  L LT N LR L ++            L   
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTR-----YSQLT-- 52

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS 391
                                        L +    +S +  E+ +    +  L+L  N 
Sbjct: 53  ----------------------------SLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           + +L  +  + C +L  L L  N I+   +       +L  L L +N L          +
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 451 PMLQILDLSYN-IASLPENP-PFSSLPHLQELYLRRMQLRE-APTDILRLQQLRILDLSQ 507
             LQ L LS N I +L        +   L++L L   Q++E +P     + +L  L L+ 
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 508 NSLQ-SIPEGFK---NLTSLTELDLSDNNISALPPE 539
             L  S+ E        TS+  L LS++ +S     
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (276), Expect = 2e-25
 Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
                D S   + ++P +L +  ++  L L+ N+++  P A  T  S L+ L +  N + 
Sbjct: 5   SHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQ 498
           ++  +  + +PML++L+L +N ++ L +   F+   +L EL+L    +++   +     +
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 499 QLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELVS 542
            L  LDLS N L S   G    L +L EL LS+N I AL  E + 
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  217 bits (555), Expect = 1e-63
 Identities = 104/559 (18%), Positives = 194/559 (34%), Gaps = 51/559 (9%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNL 67
             + + N  N  L ++P  +  +                + L  + N +  +       L
Sbjct: 12  EVNKTYNCENLGLNEIPGTLPNS---------------TECLEFSFNVLPTIQNTTFSRL 56

Query: 68  PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             LT L+++  ++  +        H L +L ++ N ++ + +       AL         
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 126 LKEL-PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASW 183
           +  +    L     L      +N I+S+         K+  LD + N +  LS   ++S 
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 184 TMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC--SLAEFYMG 238
              T   L  + N + G+       +    L+    + L  I   +      SL      
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 239 NNALSALPAEL---GKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPE 293
           +     +   +        + +++L  +           C   L  LDL+   LS LP  
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +  ++TL+KL+L+ N    L     +      L +L  +         +   E+L  +  
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGNTKRLELGTGCLENLENL-- 352

Query: 354 RLSVTSKELSLEGMNLSAIPS---EIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLI 409
                 +EL L   ++        ++     +  L+LS N    L  E    C  L+ L 
Sbjct: 353 ------RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 410 LSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPE 467
           L+  ++K     +   +L  L  L L ++ L       F  +P LQ L+L  N       
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 468 NPP--FSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSL 523
                  +L  L+ L L    L          L+ +  +DLS N L S       +L  +
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 524 TELDLSDNNISALPPELVS 542
             L+L+ N+IS + P L+ 
Sbjct: 527 Y-LNLASNHISIILPSLLP 544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (538), Expect = 4e-61
 Identities = 90/546 (16%), Positives = 189/546 (34%), Gaps = 70/546 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L+L+   +  +  + +++               L  L+L  N +  + E  L     L 
Sbjct: 61  FLDLTRCQIYWIHEDTFQSQ------------HRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL 129
            L      +S +    +     L+SL +  N I  I   +      L   D  +N +  L
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 130 PSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT--VLSNNLIASWT 184
                   +         + N I  +     D +    L+  G +    +      ++  
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 185 MLTELIASKNLLNGMPETI---GSLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNN 240
            L            +   +        +  ++L ++   +I S+   C   L E  +   
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPE--IGK 296
            LS LP+ L  LS L  L L +N+ +  C  +      L+ L +  N+         +  
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS 356
           +  LR+L L+ + + T             L+ L                         L 
Sbjct: 349 LENLRELDLSHDDIETS------DCCNLQLRNLSH-----------------------L- 378

Query: 357 VTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSCASLQTLILSRN 413
              + L+L      ++ +E ++   ++  LDL+   ++    +    +   L+ L LS +
Sbjct: 379 ---QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQV---PSDGFKDIPMLQILDLSYN-IASLPENP 469
            +    + +   L +L  L L  N   +     ++  + +  L+IL LS+  ++S+ ++ 
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 470 PFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDL 528
            F+SL  +  + L   +L  +  + L   +   L+L+ N +  I       L+    ++L
Sbjct: 496 -FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINL 554

Query: 529 SDNNIS 534
             N + 
Sbjct: 555 RQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  196 bits (499), Expect = 1e-55
 Identities = 93/470 (19%), Positives = 176/470 (37%), Gaps = 33/470 (7%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL 152
           K+ +     + +IP  + ++      + S N L  +  ++  R +NL+    +   I  +
Sbjct: 15  KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 153 PED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLI 210
            ED      ++  L +  N L  ++   ++    L  L   +  ++ +    + +   L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 211 RLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQL 265
            L L  N I SI          L      NNA+  L  E    L + + L +L+L+ N +
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDI 191

Query: 266 KEYCVEACQ-LRLSVLDLSNNSLSGLPPE---IGKMTTLRKLLLTGNPLRTLRSSLVNGP 321
                 A        L+        +  +      + +L            +  ++  G 
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE 381
               ++ +   L ++          +     + L    +EL L   +LS +PS +     
Sbjct: 252 CEMSVESIN--LQKHYFF---NISSNTFHCFSGL----QELDLTATHLSELPSGLVGLST 302

Query: 382 ITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPL 439
           + KL LS N  + L     S+  SL  L +  N  +       L +L +L  L L ++ +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 440 RQVP--SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLR--EAPTDI 494
                 +   +++  LQ L+LSYN   SL     F   P L+ L L   +L+  +A +  
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 495 LRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELVSV 543
             L  L++L+LS + L    E  F  L +L  L+L  N+      +  + 
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  160 bits (406), Expect = 1e-42
 Identities = 91/496 (18%), Positives = 181/496 (36%), Gaps = 46/496 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
           SL L +  +  +                      L+ L   +N I  L KED+ +L   T
Sbjct: 133 SLYLGSNHISSIKLPKGFPT------------EKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 72  V--LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA---TALVKFDCSSNQL 126
              LN++ N ++ +     +  + +SL+      + +  +        +L          
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 127 KELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
           +++  ++      +++       +   ++  +     S + +LD+    L+ L + L   
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL-VG 299

Query: 183 WTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAEFYMGN 239
            + L +L+ S N    + + +  +   L  L +  N          +    +L E  + +
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 240 NALSALPA---ELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPE- 293
           + +        +L  LS L +L+L  N+      EA +   +L +LDL+   L     + 
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 294 -IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352
               +  L+ L L+ + L      L +G     L++L   L  N   + +  K + +   
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLP--ALQHLN--LQGNHFPKGNIQKTNSLQTL 475

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
            RL    + L L   +LS+I    +     +  +DLS N +     E  S      L L+
Sbjct: 476 GRL----EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 531

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
            N I     ++L  LS    + L  NPL    S    +I  L+    +       E+   
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCS----NIYFLEWYKENMQKLEDTEDTLC 587

Query: 472 SSLPHLQELYLRRMQL 487
            + P L+ + L  + L
Sbjct: 588 ENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (260), Expect = 1e-23
 Identities = 41/276 (14%), Positives = 81/276 (29%), Gaps = 46/276 (16%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
            +      +  N  L+ +P  +    +   L  + N L T++++  +      L  L   
Sbjct: 10  EKEVNKTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSR-----LINLT-- 60

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS 391
                                        L L    +  I  + +++   +  L L+ N 
Sbjct: 61  ----------------------------FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           +  +    LS   +L+ L   +  I       L +  +L  L L +N +  +        
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 451 PMLQILDLSYN-IASLPENPPFSSLPHLQELYLR--RMQLREAPTDILRLQQLRILDLSQ 507
             L++LD   N I  L +    SSL     L L      +             + L+   
Sbjct: 153 EKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 508 NSLQSIPE---GFKNLTSLTELDLSDNNISALPPEL 540
                +         + SL      D +   + P +
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  216 bits (552), Expect = 8e-63
 Identities = 90/543 (16%), Positives = 188/543 (34%), Gaps = 64/543 (11%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSF 100
           +  L L       ++ + +  L  L VL +  +          P  I      +      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 101 NSIMK-IPDEIG--SATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITSLPEDL 156
               K   D       + L+K   +S+   K +  S    L  +     +N IT + + +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
              +K+ +  +  +     +                            +L  L  ++++ 
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLKDLTDVEVYN 258

Query: 217 NRIL-SIPSSISGCCSLAEFYMGNNALSALP---------AELGKLSKLGTLDLHSNQLK 266
              L  +P+ +     +    +  N   +           A+     K+  + +  N LK
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 267 EYCVEA--CQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
            + VE    +++ L +L+   N L G  P  G    L  L L  N +  + ++       
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE- 377

Query: 324 ALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELS-LEGMNLSAIPSEI 376
             ++ L         +P   D++        +++ + +  +  E+  ++G N   +    
Sbjct: 378 -QVENLSFAHNKLKYIPNIFDAK-------SVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 377 WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTS-------LSS 428
           ++   ++ ++LS N I + P E  S+ + L ++ L  N + + P   L            
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 429 LSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
           L+ + L  N L ++  D     +P L  +DLSYN  +  P      +   L+   +R  +
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ--PLNSSTLKGFGIRNQR 547

Query: 487 -------LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
                  LRE P  I     L  L +  N ++ + E      +++ LD+ DN   ++   
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLS 605

Query: 540 LVS 542
            V 
Sbjct: 606 YVC 608

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  195 bits (498), Expect = 3e-55
 Identities = 81/519 (15%), Positives = 165/519 (31%), Gaps = 78/519 (15%)

Query: 46  DLQKLILAHNNIEK-LKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM 104
           DL K  +  +  +K +K+  R     T +    N ++ +  A+  L  L+   +  +   
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS--- 216

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK-ASNNCITSLPEDLADCSKMS 163
               E        +    + Q K          +L+D +  +   +T LP  L    +M 
Sbjct: 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI--LS 221
            ++V  N+       L   W  L +                   ++  + +  N +    
Sbjct: 277 LINVACNRGISGEQ-LKDDWQALADA--------------PVGEKIQIIYIGYNNLKTFP 321

Query: 222 IPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSV 279
           + +S+     L       N L       G   KL +L+L  NQ+ E     C    ++  
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 280 LDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
           L  ++N L  +P   +   ++ +  +  + N + ++     +   P   K          
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK---------- 431

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE-ITKLDLSRNSIQELP 396
                            +      ++L    +S  P E++  G  ++ ++L  N + E+P
Sbjct: 432 --------------GINV----SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 397 P--------ELSSCASLQTLILSRNKIKDWPDAI-LTSLSSLSCLKLDNNPLRQVPSDGF 447
                       +   L ++ L  NK+    D    T+L  L  + L  N   + P+   
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QP 532

Query: 448 KDIPMLQILDLSYNIA--------SLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
            +   L+   +               PE    +  P L +L +    +R+    I     
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEG--ITLCPSLTQLQIGSNDIRKVNEKIT--PN 588

Query: 500 LRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALP 537
           + +LD+  N   SI               L  +    + 
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  186 bits (475), Expect = 4e-52
 Identities = 71/500 (14%), Positives = 159/500 (31%), Gaps = 92/500 (18%)

Query: 64  LRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
           L +   +T L++     S  +P AIG+L  L+ L +  +                     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE------------------K 118

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED---LADCSKMSKLDVEGNKLTVLSNNL 179
            N+    P  +   ++    +           D     D S + K  +  +         
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
                  T++    N +  + + +  L++L +  +  +  ++     +     +E+    
Sbjct: 179 SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY---A 235

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
                   +   L  L  +++                      +  +L+ LP  +  +  
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEV---------------------YNCPNLTKLPTFLKALPE 274

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           ++ + +  N   +      +    A                                   
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEK---------------------------I 307

Query: 360 KELSLEGMNLSA--IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           + + +   NL    + + + +  ++  L+   N ++   P   S   L +L L+ N+I +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE 367

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IASLPEN------P 469
            P         +  L   +N L+ +P+    K + ++  +D SYN I S+         P
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 470 PFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG--------FKNL 520
                 ++  + L   Q+ + P ++      L  ++L  N L  IP+         FKN 
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 521 TSLTELDLSDNNISALPPEL 540
             LT +DL  N ++ L  + 
Sbjct: 488 YLLTSIDLRFNKLTKLSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  127 bits (321), Expect = 2e-31
 Identities = 43/298 (14%), Positives = 95/298 (31%), Gaps = 36/298 (12%)

Query: 276 RLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           R++ L L     SG +P  IG++T L  L L  +  +           P  +    S   
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG----PKGISANMSDEQ 137

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394
           + +                  S   K+         +I        + T++    N+I  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL-------------------- 434
           +   +     L+   +  +              +    +                     
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP-------PFSSLPHLQELYLRRMQ 486
           +   L ++P+   K +P +Q+++++ N   S  +                +Q +Y+    
Sbjct: 258 NCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 487 LRE--APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 542
           L+     T + ++++L +L+   N L+     F +   L  L+L+ N I+ +P     
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCG 374

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  200 bits (512), Expect = 2e-56
 Identities = 127/540 (23%), Positives = 199/540 (36%), Gaps = 83/540 (15%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM- 104
           L+ L ++ NN       L +   L  L++S NKLS +   AI     LK L++S N  + 
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 105 KIPDEIGSATALVKFDCSSNQLK-ELPSSL-GRCLNLSDFKASNNCIT-SLPEDLADCSK 161
            IP       +L     + N+   E+P  L G C  L+    S N    ++P     CS 
Sbjct: 262 PIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 162 MSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNGM-PETIGSLS-RLIRLDLHQNR 218
           +  L +  N  +  L  + +     L  L  S N  +G  PE++ +LS  L+ LDL  N 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 219 IL-SIPSSISGCC--SLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK---EYCVE 271
               I  ++      +L E Y+ NN  +  +P  L   S+L +L L  N L       + 
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 272 ACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           +   +L  L L  N L G +P E+  + TL  L+L  N L         G  P+ L    
Sbjct: 440 SLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--------TGEIPSGLSNCT 490

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR 389
           +                       L+     +SL    L+  IP  I     +  L LS 
Sbjct: 491 N-----------------------LNW----ISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 390 NSIQ-ELPPELSSCASLQTLILSRNKI--------------------KDWPDAILTSLSS 428
           NS    +P EL  C SL  L L+ N                             + +   
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583

Query: 429 LSCLKLDNNPLR---QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485
                   N L           + +      +++  +     +P F +   +  L +   
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

Query: 486 QLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELVS 542
            L    P +I  +  L IL+L  N +  SIP+   +L  L  LDLS N +   +P  + +
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  194 bits (496), Expect = 3e-54
 Identities = 122/507 (24%), Positives = 199/507 (39%), Gaps = 79/507 (15%)

Query: 47  LQKLILAHNNIE-KLKEDLR-NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI 103
           LQ L LA N    ++ + L      LT L++S N     +P   G   +L+SL +S N+ 
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 104 M-KIPDE-IGSATALVKFDCSSNQLK-ELPSSLGRCL-NLSDFKASNNCIT-SLPEDLAD 158
             ++P + +     L   D S N+   ELP SL     +L     S+N  +  +  +L  
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 159 CSKMS--KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLH 215
             K +  +L ++ N  T      +++ + L  L  S N L+G  P ++GSLS+L  L L 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 216 QNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK---EYCV 270
            N +   IP  +    +L    +  N L+  +P+ L   + L  + L +N+L       +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 271 EACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
              +  L++L LSNNS SG +P E+G   +L  L L  N          NG  PA +   
Sbjct: 511 GRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF--------NGTIPAAMFKQ 561

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389
             ++  N  +           M          L  +G+       ++         +++ 
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI----RSEQLNRLSTRNPCNITS 617

Query: 390 NSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
                   P   +  S+  L +S N +      I   + S+                   
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSG---YIPKEIGSMP------------------ 656

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN 508
               L IL+L +N               +             P ++  L+ L ILDLS N
Sbjct: 657 ---YLFILNLGHN--------------DIS---------GSIPDEVGDLRGLNILDLSSN 690

Query: 509 SLQ-SIPEGFKNLTSLTELDLSDNNIS 534
            L   IP+    LT LTE+DLS+NN+S
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  182 bits (465), Expect = 6e-50
 Identities = 142/563 (25%), Positives = 219/563 (38%), Gaps = 93/563 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
           S++LS++ L    + V  +               L+ L L++++I       +    LT 
Sbjct: 54  SIDLSSKPLNVGFSAVSSSL---------LSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 73  LNVSHNKLS-ELPAA--IGELHMLKSLDVSFNSI-MKIPDEIGSA-TALVKFDCSSNQL- 126
           L++S N LS  +     +G    LK L+VS N++        G    +L   D S+N + 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 127 KELPSSL---GRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
                       C  L     S N I+  +   ++ C  +  LDV  N  +      +  
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST-GIPFLGD 221

Query: 183 WTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN 240
            + L  L  S N L+G     I + + L  L++  N+ +  IP       SL    +  N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279

Query: 241 ALS-ALPAEL-GKLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNSLSG-LPP 292
             +  +P  L G    L  LDL  N         +   +C   L  L LS+N+ SG LP 
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG--SCS-LLESLALSSNNFSGELPM 336

Query: 293 E-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
           + + KM  L+ L L+ N          +G  P  L  L + L                  
Sbjct: 337 DTLLKMRGLKVLDLSFNEF--------SGELPESLTNLSASL------------------ 370

Query: 352 ATRLSVTSKELSLEGMNLS-AIPSEIWEAG--EITKLDLSRNSIQ-ELPPELSSCASLQT 407
                     L L   N S  I   + +     + +L L  N    ++PP LS+C+ L +
Sbjct: 371 --------LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422

Query: 408 LILSRNK----IKDWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN- 461
           L LS N     I       L SLS L  LKL  N L  ++P +    +  L+ L L +N 
Sbjct: 423 LHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFND 477

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFK 518
               +P     S+  +L  + L   +L  E P  I RL+ L IL LS NS   +IP    
Sbjct: 478 LTGEIPSG--LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 519 NLTSLTELDLSDNNIS-ALPPEL 540
           +  SL  LDL+ N  +  +P  +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  167 bits (424), Expect = 2e-44
 Identities = 111/476 (23%), Positives = 172/476 (36%), Gaps = 88/476 (18%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPA-AIGELHMLKSLDVSFNSI 103
           L  L L+ N+    +     +  LL  L +S N  S ELP   + ++  LK LD+SFN  
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 104 M-KIPDEIGSATA-LVKFDCSSNQLK-ELPSSLGRCL--NLSDFKASNNCIT-SLPEDLA 157
             ++P+ + + +A L+  D SSN     +  +L +     L +    NN  T  +P  L+
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 158 DCSKMSKLDVEGNKLT----------------VLSNNL--------IASWTMLTELIASK 193
           +CS++  L +  N L+                 L  N+        +     L  LI   
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 194 NLLNGM-PETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELG 250
           N L G  P  + + + L  + L  NR+   IP  I    +LA   + NN+ S  +PAELG
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 251 KLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLL 304
               L  LDL++N                       ++ N ++G     I      ++  
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMF-------KQSGKIAANFIAGKRYVYIKNDGMKKECH 588

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
             GN L         G     L  L +                               ++
Sbjct: 589 GAGNLLEF------QGIRSEQLNRLST---------------------------RNPCNI 615

Query: 365 EGMNLS-AIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDW-PDA 421
                           G +  LD+S N +   +P E+ S   L  L L  N I    PD 
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS--LPENPPFSSLP 475
           +   L  L+ L L +N L          + ML  +DLS N  S  +PE   F + P
Sbjct: 676 V-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (336), Expect = 5e-33
 Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 14/274 (5%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM 104
           L+ LIL  N++  ++   L N   L  +++S+N+L+ E+P  IG L  L  L +S NS  
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527

Query: 105 -KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             IP E+G   +L+  D ++N     +P+++ +        A+N         + +    
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI---AANFIAGKRYVYIKNDGMK 584

Query: 163 SKLDVEGN--KLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRI 219
            +    GN  +   + +  +   +       +  +  G    T  +   ++ LD+  N +
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 220 L-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR 276
              IP  I     L    +G+N +S ++P E+G L  L  LDL SN+L          L 
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 277 -LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309
            L+ +DLSNN+LSG  PE+G+  T        NP
Sbjct: 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 476 HLQELYLRRMQLREA----PTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531
            +  + L    L        + +L L  L  L LS + +     GFK   SLT LDLS N
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 532 NISALPPELVS 542
           ++S     L S
Sbjct: 111 SLSGPVTTLTS 121

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  193 bits (493), Expect = 6e-55
 Identities = 103/553 (18%), Positives = 189/553 (34%), Gaps = 63/553 (11%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
           +      +   +P+ +                   + L L+ N +  L      + P L 
Sbjct: 11  TYQCMELNFYKIPDNL---------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQ 55

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           VL++S  ++  +   A   L  L +L ++ N I  +        ++L K       L  L
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 130 PS-SLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            +  +G    L +   ++N I S   PE  ++ + +  LD+  NK+  +    +     +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 187 T----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSL------AE 234
                 L  S N +N +        RL +L L  N      + + I G   L        
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 235 FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-----RLSVLDLSNNSLS 288
            +     L       L  L  L   +     L  Y  +   L      +S   L + ++ 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 289 GLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 348
            +          + L L         +  +       LK L      N+   A +  +  
Sbjct: 296 RVKDFSY-NFGWQHLELVNCKFGQFPTLKLKS-----LKRLT--FTSNKGGNAFSEVD-- 345

Query: 349 ITMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
                 L    + L L    LS         +    +  LDLS N +  +         L
Sbjct: 346 ---LPSL----EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 406 QTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IA 463
           + L    + +K     ++  SL +L  L + +   R   +  F  +  L++L ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 464 SLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLT 521
                  F+ L +L  L L + QL +        L  L++L+++ N L+S+P+G F  LT
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 522 SLTELDLSDNNIS 534
           SL ++ L  N   
Sbjct: 519 SLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  186 bits (475), Expect = 2e-52
 Identities = 109/483 (22%), Positives = 174/483 (36%), Gaps = 41/483 (8%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL 152
            +      +  KIPD +    +    D S N L+ L S S      L     S   I ++
Sbjct: 10  ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 153 PED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLI 210
            +      S +S L + GN +  L+    +  + L +L+A +  L  +    IG L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 211 RLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKL----GTLDLHSN 263
            L++  N I    +P   S   +L    + +N + ++    L  L ++     +LDL  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 264 QLKEYCVEACQ-LRLSVLDLSNNSLSGLPPE--IGKMTTLRKLLLTG------NPLRTLR 314
            +      A + +RL  L L NN  S    +  I  +  L    L          L    
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL------------ITMATRLSVTSKEL 362
            S + G     ++  R    +    +       L            I      S      
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI--KDWPD 420
            LE +N         +   + +L  + N       E+    SL+ L LSRN +  K    
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCS 366

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
                 +SL  L L  N +  + S  F  +  L+ LD  ++ +  + E   F SL +L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 480 LYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSI--PEGFKNLTSLTELDLSDNNISAL 536
           L +     R A   I   L  L +L ++ NS Q    P+ F  L +LT LDLS   +  L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 537 PPE 539
            P 
Sbjct: 486 SPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  182 bits (465), Expect = 4e-51
 Identities = 93/442 (21%), Positives = 165/442 (37%), Gaps = 29/442 (6%)

Query: 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
           + + C      ++P +L    +  +   S N +  L         ++  LD+   ++  +
Sbjct: 10  ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +  I    +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSV--LDLSNN 285
           E  + +N + +   P     L+ L  LDL SN+++           Q+ L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--LKYLRSRLPENEDSEAST 343
            ++ + P   K   L KL L  N       +++      L  L+  R  L E  +     
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSL---NVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 344 TK-EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
              +  +     L++    L+     L  I         ++   L   +I+ +    S  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYN 303

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
              Q L L   K   +P   L SL  L+     +N      S    D+P L+ LDLS N 
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFS--EVDLPSLEFLDLSRNG 358

Query: 463 ASLPENPP--FSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG--FK 518
            S              L+ L L    +    ++ L L+QL  LD   ++L+ + E   F 
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 519 NLTSLTELDLSDNNISALPPEL 540
           +L +L  LD+S  +       +
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGI 440

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (286), Expect = 5e-27
 Identities = 58/192 (30%), Positives = 80/192 (41%), Gaps = 12/192 (6%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKI 415
           V +       +N   IP  +        LDLS N ++ L      S   LQ L LSR +I
Sbjct: 7   VPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
           +   D    SLS LS L L  NP++ +    F  +  LQ L      +ASL    P   L
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHL 123

Query: 475 PHLQELYLRRMQLREA--PTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLT----ELD 527
             L+EL +    ++    P     L  L  LDLS N +QSI     + L  +      LD
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 528 LSDNNISALPPE 539
           LS N ++ + P 
Sbjct: 184 LSLNPMNFIQPG 195

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.7 bits (241), Expect = 2e-21
 Identities = 54/273 (19%), Positives = 88/273 (32%), Gaps = 65/273 (23%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +          +   +P  +    + + L L+ NPLR L S             L+  
Sbjct: 5   EVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFS-----FPELQ-- 55

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                                        L L    +  I                    
Sbjct: 56  ----------------------------VLDLSRCEIQTIEDGA---------------- 71

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
                   S + L TLIL+ N I+       + LSSL  L      L  + +     +  
Sbjct: 72  ------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI----LDLS 506
           L+ L++++N I S      FS+L +L+ L L   +++    TD+  L Q+ +    LDLS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 507 QNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
            N +  I  G      L +L L +N  S    +
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 54/261 (20%), Positives = 85/261 (32%), Gaps = 18/261 (6%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           ++    L    IE++ +D         L + + K  + P    +L  LK L  + N    
Sbjct: 283 NVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN 339

Query: 106 IPDEIGSATALVKFDCSSNQLKEL---PSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
              E+    +L   D S N L        S     +L     S N + ++  +     ++
Sbjct: 340 AFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL 220
             LD + + L  +S  ++  S   L  L  S              LS L  L +  N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 221 SI--PSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR- 276
               P   +   +L    +    L  L       LS L  L++ SNQLK   V       
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPDGIFDR 516

Query: 277 ---LSVLDLSNNSLSGLPPEI 294
              L  + L  N      P I
Sbjct: 517 LTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNSIM 104
           L+ L L+ N +  +  +   L  L  L+  H+ L ++        L  L  LD+S     
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 105 KIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPED-LADCS 160
              + I    ++L     + N  +E  LP       NL+    S   +  L        S
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
            +  L++  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  190 bits (485), Expect = 1e-53
 Identities = 115/552 (20%), Positives = 202/552 (36%), Gaps = 57/552 (10%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           +L+LS   LR + +  + +F             +LQ L L+   I+ +++   ++L  L+
Sbjct: 32  NLDLSFNPLRHLGSYSFFSF------------PELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDCSSNQLK-- 127
            L ++ N +  L   A   L  L+ L     ++       IG    L + + + N ++  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 128 ELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMS----KLDVEGNKLTVLSNNLIAS 182
           +LP       NL     S+N I S+   DL    +M      LD+  N +  +       
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 183 WTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIPS----SISGCCSLAEFY 236
              L +L    N  +   M   I  L+ L    L      +  +      S    L    
Sbjct: 200 IR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 237 MGNNALSAL-------PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289
           +    L+ L             L+ + +  L S  ++     +       L+L N     
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
            P     + +L++L  T N       S V+ P+   L++L   L  N  S      +   
Sbjct: 319 FPTLK--LKSLKRLTFTSNKGGNA-FSEVDLPS---LEFLD--LSRNGLSFKGCCSQSDF 370

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQT 407
              T L    K L L    +  + S      ++  LD   ++++++       S  +L  
Sbjct: 371 GT-TSL----KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPL-RQVPSDGFKDIPMLQILDLSYN-IASL 465
           L +S    +   + I   LSSL  LK+  N        D F ++  L  LDLS   +  L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 466 PENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG--FKNLTS 522
                F+SL  LQ L +         T   + L  L++LD S N + +  +       +S
Sbjct: 486 SPTA-FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 544

Query: 523 LTELDLSDNNIS 534
           L  L+L+ N+ +
Sbjct: 545 LAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  188 bits (480), Expect = 6e-53
 Identities = 99/556 (17%), Positives = 184/556 (33%), Gaps = 77/556 (13%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +      +   +P+ +  +                + L L+ N +  L      + P
Sbjct: 8   PNITYQCMELNFYKIPDNLPFS---------------TKNLDLSFNPLRHLGSYSFFSFP 52

Query: 69  LLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQL 126
            L VL++S  ++  +   A   L  L +L ++ N I  +        ++L K       L
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 127 KEL-PSSLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L    +G    L +   ++N I S   PE  ++ + +  LD+  NK+  +    +   
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM 237
             +      L  S N +N +        RL +L L  N      + + I G   L    +
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 238 GNNALSALPA----ELGKLSKLGTLDLHSNQLKEYCVEACQL--------RLSVLDLSNN 285
                         +   L  L  L +   +L         +         +S   L + 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           ++  +          + L L               PT  L    R     N+   A +  
Sbjct: 293 TIERVKD-FSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           +  +     L ++   LS +G          +    +  LDLS N +  +         L
Sbjct: 345 D--LPSLEFLDLSRNGLSFKGC----CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 406 QTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464
           + L    + +K     ++  SL +L  L + +   R   +  F  +  L++L ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--- 455

Query: 465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSL 523
                        QE +L        P     L+ L  LDLSQ  L+ +    F +L+SL
Sbjct: 456 -----------SFQENFL--------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 524 TELDLSDNNISALPPE 539
             L++S NN  +L   
Sbjct: 497 QVLNMSHNNFFSLDTF 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  174 bits (444), Expect = 7e-48
 Identities = 107/486 (22%), Positives = 173/486 (35%), Gaps = 45/486 (9%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL 152
            +      +  KIPD +  +      D S N L+ L   S      L     S   I ++
Sbjct: 10  ITYQCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 153 -PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLI 210
                   S +S L + GN +  L+    +  + L +L+A +  L  +    IG L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 211 RLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLG----TLDLHSN 263
            L++  N I    +P   S   +L    + +N + ++   +L  L ++     +LDL  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 264 QLKEYCVEACQ-LRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
            +      A + +RL  L L NN  S   +   I  +  L    L     R   +  +  
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN--LEK 245

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG 380
              + L+ L +   E           D I             SL  + +  +    +  G
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 381 EITKLDLSRNSIQELPPE--------------------LSSCASLQTLILSRNKI--KDW 418
               L+L      + P                           SL+ L LSRN +  K  
Sbjct: 306 -WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
                   +SL  L L  N +  + S  F  +  L+ LD  ++ +  + E   F SL +L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 478 QELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNIS 534
             L +     R A   I   L  L +L ++ NS Q   +P+ F  L +LT LDLS   + 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 535 ALPPEL 540
            L P  
Sbjct: 484 QLSPTA 489

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  160 bits (407), Expect = 8e-43
 Identities = 105/538 (19%), Positives = 185/538 (34%), Gaps = 70/538 (13%)

Query: 47  LQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI- 103
           L  LIL  N I+ L       L  L  L      L+ L    IG L  LK L+V+ N I 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 104 -MKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKA----SNNCITSLPEDLA 157
             K+P+   + T L   D SSN+++ +  + L     +         S N +  +     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 158 DCSKMSKLDVEGNKLTV-----------------LSNNLIASWTMLTELIASK------- 193
              ++ KL +  N  ++                 L      +   L +   S        
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 194 -----------NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
                        L+ + +    L+ +    L    I  +    S         + N   
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKF 316

Query: 243 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL---PPEIGKMTT 299
              P     L  L  L   SN+      E     L  LDLS N LS            T+
Sbjct: 317 GQFPTLK--LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           L+ L L+ N + T+ S+ +       L++L      +       ++  +      L    
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQ---LEHLD--FQHSNLK--QMSEFSVFLSLRNL---- 423

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIK 416
             L +   +     + I+     +  L ++ NS QE  LP   +   +L  L LS+ +++
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLP 475
                   SLSSL  L + +N    + +  +K +  LQ+LD S N I +  +        
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 476 HLQELYLRRMQLR---EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLS 529
            L  L L +       E  + +  ++  R L +    ++ + P   + +  +  L+++
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.1 bits (224), Expect = 3e-19
 Identities = 54/268 (20%), Positives = 87/268 (32%), Gaps = 65/268 (24%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +          +   +P  +    + + L L+ NPLR L S             L+  
Sbjct: 5   EVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFS-----FPELQ-- 55

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                                        L L    +  I                    
Sbjct: 56  ----------------------------VLDLSRCEIQTIEDG----------------- 70

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
                   S + L TLIL+ N I+       + LSSL  L      L  + +     +  
Sbjct: 71  -----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI----LDLS 506
           L+ L++++N I S      FS+L +L+ L L   +++    TD+  L Q+ +    LDLS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 507 QNSLQSIPEGFKNLTSLTELDLSDNNIS 534
            N +  I  G      L +L L +N  S
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 87.0 bits (216), Expect = 3e-18
 Identities = 72/322 (22%), Positives = 111/322 (34%), Gaps = 70/322 (21%)

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPE- 293
                 +P  L        LDL  N L+   + +        L VLDLS   +  +    
Sbjct: 16  ELNFYKIPDNL--PFSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
              ++ L  L+LTGNP+++L     +G     L  L                        
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSG-----LSSL------------------------ 102

Query: 354 RLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQ--ELPPELSSCASLQTLIL 410
                 ++L     NL++     I     + +L+++ N IQ  +LP   S+  +L+ L L
Sbjct: 103 ------QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 411 SRNKIKDWPDAILTSLSSLSC----LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466
           S NKI+      L  L  +      L L  NP+  +    FK+I  L  L L  N  SL 
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLN 215

Query: 467 ENP-PFSSLPHLQELYLRRMQLRE----APTDILRLQQLRILDLSQNSLQSIPEGFKNLT 521
                   L  L+   L   + R        D   L+ L  L + +  L           
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY--------- 266

Query: 522 SLTELDLSDNNISALPPELVSV 543
               LD   ++I  L   L +V
Sbjct: 267 ----LDYYLDDIIDLFNCLTNV 284

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 5e-13
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482
           +  + +++   ++ N   ++P +        + LDLS+N      +  F S P LQ L L
Sbjct: 4   VEVVPNITYQCMELN-FYKIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 483 RRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 539
            R +++       + L  L  L L+ N +QS+  G F  L+SL +L   + N+++L   
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRILDLSQ 507
            +P +    +  N   +P+N P       + L L    LR           +L++LDLS+
Sbjct: 6   VVPNITYQCMELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 508 NSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 540
             +Q+I +G +++L+ L+ L L+ N I +L    
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  179 bits (457), Expect = 6e-51
 Identities = 107/510 (20%), Positives = 178/510 (34%), Gaps = 107/510 (20%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHMLKSLDVSFNSIMK 105
           LQ+ +   +N+ ++  +  N+   T    + ++     P   GE   +    +       
Sbjct: 13  LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-- 70

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                       + + ++  L  LP       +L    AS N +T LPE       +   
Sbjct: 71  --------RQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVD 119

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +     L+ L   L         L  S N L  +PE + + S L  +D+  N +  +P  
Sbjct: 120 NNNLKALSDLPPLL-------EYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL 171

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
                SL     GNN L  LP EL  L  L  +   +N LK+       L    +   NN
Sbjct: 172 PP---SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLE--SIVAGNN 225

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            L  LP E+  +  L  +    N L+TL         P L   L                
Sbjct: 226 ILEELP-ELQNLPFLTTIYADNNLLKTL---------PDLPPSL---------------- 259

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
                         + L++    L+ +P        +T LD+S N    L     +   L
Sbjct: 260 --------------EALNVRDNYLTDLPELP---QSLTFLDVSENIFSGLSELPPN---L 299

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IAS 464
             L  S N+I+   D       SL  L + NN L ++P+      P L+ L  S+N +A 
Sbjct: 300 YYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAE 351

Query: 465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI----------------LDLSQN 508
           +PE        +L++L++    LRE P     ++ LR+                L +  N
Sbjct: 352 VPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406

Query: 509 SLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            L+  P+      S+ +L ++   +     
Sbjct: 407 PLREFPD---IPESVEDLRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  172 bits (437), Expect = 5e-48
 Identities = 94/449 (20%), Positives = 175/449 (38%), Gaps = 73/449 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            L L+N  L  +P                     L+ L+ + N++ +L E  ++L  L V
Sbjct: 75  ELELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQSLKSLLV 118

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
            N +   LS+LP       +L+ L VS N + K+P E+ +++ L   D  +N LK+LP  
Sbjct: 119 DNNNLKALSDLP------PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL 171

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                +L    A NN +  LPE L +   ++ +  + N L  L +        L  ++A 
Sbjct: 172 PP---SLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAG 223

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N+L  +PE + +L  L  +    N + ++P       SL    + +N L+ LP     L
Sbjct: 224 NNILEELPE-LQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNYLTDLPELPQSL 279

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312
           + L   +   + L E         L  L+ S+N +  L        +L +L ++ N L  
Sbjct: 280 TFLDVSENIFSGLSELPPN-----LYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE 331

Query: 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI 372
           L +          L+ L      N            +     L    K+L +E   L   
Sbjct: 332 LPALPPR------LERL--IASFNH-----------LAEVPELPQNLKQLHVEYNPLREF 372

Query: 373 PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
           P        +  L ++ + + E+P       +L+ L +  N ++++PD       S+  L
Sbjct: 373 PDIP---ESVEDLRMN-SHLAEVPELPQ---NLKQLHVETNPLREFPD----IPESVEDL 421

Query: 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           ++++  +        +    L+     ++
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  171 bits (436), Expect = 6e-48
 Identities = 110/499 (22%), Positives = 189/499 (37%), Gaps = 68/499 (13%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPL--LT 71
               + +L ++P E  +N     E    W   +           E     LR+       
Sbjct: 16  PLRHSSNLTEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            L +++  LS LP     L   +SL  S NS+ ++P+   S  +L+  + +   L +LP 
Sbjct: 75  ELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
            L   L +S     NN +  LPE L + S +  +DV+ N L  L +        L  + A
Sbjct: 132 LL-EYLGVS-----NNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAA 180

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
             N L  +PE + +L  L  +    N +  +P       SL     GNN L  LP EL  
Sbjct: 181 GNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQN 235

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           L  L T+   +N LK        L    L++ +N L+ LP        L  L ++ N   
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPPSLE--ALNVRDNYLTDLPELPQS---LTFLDVSENIFS 290

Query: 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371
            L     N      L YL      NE          L  +   L    +EL++    L  
Sbjct: 291 GLSELPPN------LYYLN--ASSNEIRS-------LCDLPPSL----EELNVSNNKLIE 331

Query: 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431
           +P+       + +L  S N + E+P    +   L+ L +  N ++++PD       S+  
Sbjct: 332 LPALP---PRLERLIASFNHLAEVPELPQN---LKQLHVEYNPLREFPD----IPESVED 381

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L+++++ L +VP         L+ L +  N +   P+         +++L +   ++ + 
Sbjct: 382 LRMNSH-LAEVPEL----PQNLKQLHVETNPLREFPD-----IPESVEDLRMNSERVVDP 431

Query: 491 PTDIL-RLQQLRILDLSQN 508
                    +L       +
Sbjct: 432 YEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  158 bits (401), Expect = 5e-43
 Identities = 96/476 (20%), Positives = 162/476 (34%), Gaps = 96/476 (20%)

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP---------- 153
           M I     S T L +    S+ L E+P       + +++  + +                
Sbjct: 1   MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 154 --EDLADCSKMS--KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL 209
               L DC      +L++    L+ L          L  L+AS N L  +PE   SL  L
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPELPQSLKSL 116

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
           +  + +   +  +P        L    + NN L  LP EL   S L  +D+ +N LK+  
Sbjct: 117 LVDNNNLKALSDLPP------LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLP 169

Query: 270 VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
                L    +   NN L  L PE+  +  L  +    N L+ L    ++      L+ +
Sbjct: 170 DLPPSLE--FIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKKLPDLPLS------LESI 220

Query: 330 R------SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383
                    LPE             +     L      +  +   L  +P        + 
Sbjct: 221 VAGNNILEELPE-------------LQNLPFL----TTIYADNNLLKTLPDLP---PSLE 260

Query: 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
            L++  N + +LP       SL  L +S N      +       +L  L   +N +R + 
Sbjct: 261 ALNVRDNYLTDLPELPQ---SLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLC 313

Query: 444 SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI 502
                  P L+ L++S N +  LP     +  P L+ L      L E P      Q L+ 
Sbjct: 314 D----LPPSLEELNVSNNKLIELP-----ALPPRLERLIASFNHLAEVPELP---QNLKQ 361

Query: 503 LDLSQNSLQSIPEGFKNLT----------------SLTELDLSDNNISALPPELVS 542
           L +  N L+  P+  +++                 +L +L +  N +   P    S
Sbjct: 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  156 bits (396), Expect = 3e-42
 Identities = 93/462 (20%), Positives = 158/462 (34%), Gaps = 88/462 (19%)

Query: 83  LPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSD 141
           +         L+      +++ ++P E  +  +  ++  + ++  +  P   G    ++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
            +  +       E          L++    L+ L          L  L+AS N L  +PE
Sbjct: 63  SRLRDCLDRQAHE----------LELNNLGLSSLPELP----PHLESLVASCNSLTELPE 108

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261
              SL  L+  + +   +  +P        L    + NN L  LP EL   S L  +D+ 
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL------LEYLGVSNNQLEKLP-ELQNSSFLKIIDVD 161

Query: 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 321
           +N LK+       L    +   NN L  LP E+  +  L  +    N L+ L        
Sbjct: 162 NNSLKKLPDLPPSLE--FIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKL-------- 210

Query: 322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE 381
            P L   L                              + +      L  +P E+     
Sbjct: 211 -PDLPLSL------------------------------ESIVAGNNILEELP-ELQNLPF 238

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           +T +    N ++ LP    S   L+ L +  N + D P+       SL+ L +  N    
Sbjct: 239 LTTIYADNNLLKTLPDLPPS---LEALNVRDNYLTDLPELP----QSLTFLDVSENIFSG 291

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500
           +        P L  L+ S N I SL +       P L+EL +   +L E P       +L
Sbjct: 292 LSEL----PPNLYYLNASSNEIRSLCD-----LPPSLEELNVSNNKLIELPALP---PRL 339

Query: 501 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 542
             L  S N L  +PE      +L +L +  N +   P    S
Sbjct: 340 ERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFPDIPES 378

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  179 bits (455), Expect = 7e-50
 Identities = 94/498 (18%), Positives = 179/498 (35%), Gaps = 55/498 (11%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
           +     V +      + +P+ +     +KSLD+SFN I  I                   
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIG------------------ 42

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWT 184
                  L  C NL      ++ I ++  D       +  LD+  N L+ LS++     +
Sbjct: 43  ----HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98

Query: 185 MLTELIASKNLLNGMPET--IGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNN 240
            L  L    N    +  T    +L+ L  L +      S       +G  SL E  +   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 241 ALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKM 297
           +L    ++ L  +  +  L LH ++          +   +  L+L + +L+        +
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS-------RLPENEDSEASTTKEDLIT 350
             +   +       ++ +         LL+Y+             N   + + ++ D+++
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 351 MATRLSVTS-KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQT 407
              ++   + + L +    L    S ++    ++ ++ +  + +  +P        SL+ 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 408 LILSRNKIKD---WPDAILTSLSSLSCLKLDNNPLRQVPSDG--FKDIPMLQILDLSYN- 461
           L LS N + +      A   +  SL  L L  N LR +   G     +  L  LD+S N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLT 521
              +P++        ++ L L    +R   T I   Q L +LD+S N+L S       L 
Sbjct: 399 FHPMPDS--CQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSL---FLP 451

Query: 522 SLTELDLSDNNISALPPE 539
            L EL +S N +  LP  
Sbjct: 452 RLQELYISRNKLKTLPDA 469

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  178 bits (453), Expect = 1e-49
 Identities = 84/446 (18%), Positives = 161/446 (36%), Gaps = 52/446 (11%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           D  S     +PS L     +     S N IT +   DL  C+ +  L ++ +++  +  +
Sbjct: 11  DGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 179 LIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSS--ISGCCSLAEF 235
              S   L  L  S N L+ +     G LS L  L+L  N   ++  +       +L   
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 236 YMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLP 291
            +G     S +       L+ L  L++ +  L+ Y  ++ +    +  L L  +  + L 
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 292 PEIGK-MTTLRKLLLTGNPLRTLRSSLVNGPT-PALLKYLRSRLPENEDSEASTTKEDLI 349
                 ++++R L L    L   + S +      + +K L  R     D           
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD----------- 237

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSS-------- 401
                              L  +   I E  E+   D + N + +  P  S         
Sbjct: 238 --------------ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 402 -CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
              +++ L + +  +      + + L  +  + ++N+ +  VP    + +  L+ LDLS 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 461 N-IASLPENPP--FSSLPHLQELYLRRMQLRE---APTDILRLQQLRILDLSQNSLQSIP 514
           N +            + P LQ L L +  LR        +L L+ L  LD+S+N+   +P
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403

Query: 515 EGFKNLTSLTELDLSDNNISALPPEL 540
           +  +    +  L+LS   I  +   +
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVVKTCI 429

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  171 bits (436), Expect = 3e-47
 Identities = 107/551 (19%), Positives = 207/551 (37%), Gaps = 88/551 (15%)

Query: 11  SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPL 69
           SG  +  +RS   +P+ +                  ++ L L+ N I  +   DLR    
Sbjct: 7   SGVCDGRSRSFTSIPSGLTAA---------------MKSLDLSFNKITYIGHGDLRACAN 51

Query: 70  LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLK 127
           L VL +  ++++ +   A   L  L+ LD+S N +  +     G  ++L   +   N  +
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 128 ELPSSLG-------RCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNL 179
            L  +         + L + +        + +   D A  + +++L+++   L    +  
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGN----VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 180 IASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238
           + S   +  L    +    + E     LS +  L+L    +     S      + E    
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP---LPVDEVSSP 224

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKM- 297
              L+   + L   S    L L    L+   VE     L+ L   N S S +  E+GK+ 
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 298 -TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS 356
             T+R+L +    L    S++ +      L+ ++                          
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSL-----LEKVK-------------------------- 313

Query: 357 VTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSSC----ASLQTLILS 411
                +++E   +  +P    +    +  LDLS N + E   + S+C     SLQTL+LS
Sbjct: 314 ----RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 412 RNKIKDWPDA--ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN 468
           +N ++       IL +L +L+ L +  N    +P D  +    ++ L+LS   I  +   
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTC 428

Query: 469 PPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDL 528
            P      L+ L +    L         L +L+ L +S+N L+++P+       L  + +
Sbjct: 429 IP----QTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKLKTLPDAS-LFPVLLVMKI 480

Query: 529 SDNNISALPPE 539
           S N + ++P  
Sbjct: 481 SRNQLKSVPDG 491

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 47  LQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           LQ L+L+ N++  +++    L  L  LT L++S N    +P +      ++ L++S   I
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
             +   I     L   D S+N L      L     L +   S N + +LP+  +    + 
Sbjct: 423 RVVKTCI--PQTLEVLDVSNNNLDSFSLFLP---RLQELYISRNKLKTLPDA-SLFPVLL 476

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
            + +  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 524

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  175 bits (445), Expect = 5e-49
 Identities = 95/488 (19%), Positives = 181/488 (37%), Gaps = 57/488 (11%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
            I     I ++      L       +    +++  +   +L  + +L      I  I   
Sbjct: 7   TITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSID-G 63

Query: 110 IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169
           +     L + + S+NQL ++   L     L D   +NN I  +   LA+ + ++ L +  
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229
           N++T +    + + T L  L  S N ++     +  L+ L +L    N++  +   ++  
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDL-KPLANL 176

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289
            +L    + +N +S +   L KL+ L +L   +NQ+ +         L  L L+ N L  
Sbjct: 177 TTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
           +   +  +T L  L L  N +  L          + L  L                    
Sbjct: 236 IGT-LASLTNLTDLDLANNQISNL-------APLSGLTKL-------------------- 267

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI 409
                      EL L    +S I   +     +T L+L+ N ++++ P +S+  +L  L 
Sbjct: 268 ----------TELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLT 315

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469
           L  N I D     ++SL+ L  L   NN +  V S    ++  +  L   +N   + +  
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHN--QISDLT 369

Query: 470 PFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLS 529
           P ++L  + +L L       AP +      +     +       P    +  S TE D++
Sbjct: 370 PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 429

Query: 530 DNNISALP 537
            N  S   
Sbjct: 430 WNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (386), Expect = 9e-41
 Identities = 90/426 (21%), Positives = 175/426 (41%), Gaps = 53/426 (12%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L ++  ++N +  +   L+NL  L  + +++N+++++   +  L  L  L +  N I  I
Sbjct: 70  LTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDI 127

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T L + + SSN + ++ + L    +L      N      P  LA+ + + +LD
Sbjct: 128 D-PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLD 183

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  NK++ +S   +A  T L  LIA+ N ++ +   +G L+ L  L L+ N++  I + +
Sbjct: 184 ISSNKVSDISV--LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-L 239

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +   +L +  + NN +S L   L  L+KL  L L +NQ+      A    L+ L+L+ N 
Sbjct: 240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           L  + P I  +  L  L L  N +  + S + +      L  L                 
Sbjct: 299 LEDISP-ISNLKNLTYLTLYFNNISDI-SPVSS------LTKL----------------- 333

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                        + L      +S +   +     I  L    N I +L P L++   + 
Sbjct: 334 -------------QRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRIT 378

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466
            L L+     + P     ++S  + +K     L  +      D       D+++N+ S  
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYT 436

Query: 467 ENPPFS 472
               ++
Sbjct: 437 NEVSYT 442

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  144 bits (366), Expect = 5e-38
 Identities = 79/417 (18%), Positives = 158/417 (37%), Gaps = 56/417 (13%)

Query: 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIA 181
               + ++  +                +T       D  +++ L  +   +  +    + 
Sbjct: 10  QDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG--VE 65

Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241
               LT++  S N L  +   + +L++L+ + ++ N+I  I   ++   +L    + NN 
Sbjct: 66  YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123

Query: 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLR 301
           ++ +   L  L+ L  L+L SN + +    +    L  L   N         +  +TTL 
Sbjct: 124 ITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD--LKPLANLTTLE 180

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361
           +L ++ N +  + S L        L  L                              + 
Sbjct: 181 RLDISSNKVSDI-SVLAK------LTNL------------------------------ES 203

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
           L      +S I   +     + +L L+ N ++++   L+S  +L  L L+ N+I +    
Sbjct: 204 LIATNNQISDIT-PLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP- 260

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481
            L+ L+ L+ LKL  N +  +       +  L  L+L+ N   L +  P S+L +L  L 
Sbjct: 261 -LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNEN--QLEDISPISNLKNLTYLT 315

Query: 482 LRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
           L    + +  + +  L +L+ L    N +  +     NLT++  L    N IS L P
Sbjct: 316 LYFNNISD-ISPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (334), Expect = 1e-33
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 30/370 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L +N I  + + L+NL  L  L +S N +S++ A +  L  L+ L    N +  +
Sbjct: 114 LTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDL 170

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T L + D SSN++ ++   L +  NL    A+NN I+ +   L   + + +L 
Sbjct: 171 K-PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELS 227

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           + GN+L  +    +AS T LT+L  + N ++ +   +  L++L  L L  N+I +I   +
Sbjct: 228 LNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-L 283

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +G  +L    +  N L  +   +  L  L  L L+ N + +    +   +L  L   NN 
Sbjct: 284 AGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 342

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTT 344
           +S +   +  +T +  L    N +  L   ++L        +  L            +  
Sbjct: 343 VSDVSS-LANLTNINWLSAGHNQISDLTPLANLTR------ITQL----------GLNDQ 385

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
                 +  + +V+              P+ I + G  T+ D++ N          + + 
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 445

Query: 405 LQTLILSRNK 414
             T+      
Sbjct: 446 PVTIGKGTTT 455

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.2 bits (183), Expect = 2e-14
 Identities = 24/152 (15%), Positives = 58/152 (38%), Gaps = 4/152 (2%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L  NNI  +   + +L  L  L   +NK+S++ + +  L  +  L    N I  +
Sbjct: 311 LTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDL 368

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T + +   +       P +    +++ +   +       P  ++D    ++ D
Sbjct: 369 T-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPD 427

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNG 198
           +  N  +   N +  +++    +       +G
Sbjct: 428 ITWNLPSYT-NEVSYTFSQPVTIGKGTTTFSG 458

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  170 bits (432), Expect = 1e-48
 Identities = 57/289 (19%), Positives = 97/289 (33%), Gaps = 25/289 (8%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNL-----PLLTVLNVSHNKLSELPAAIGELHML 93
              W   +     +       LK     L     P    L +    L + P     L  L
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL 106

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS-NNCITSL 152
           + + +    +M++PD +     L     + N L+ LP+S+     L +        +T L
Sbjct: 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL 212
           PE LA                  ++        L  L      +  +P +I +L  L  L
Sbjct: 167 PEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 213 DLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAELGKLSKLGTLDL-HSNQLKEYCV 270
            +  + + ++  +I     L E  + G  AL   P   G  + L  L L   + L    +
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 271 EACQLR-LSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           +  +L  L  LDL     LS LP  I ++     +L+  +    L    
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  140 bits (355), Expect = 1e-37
 Identities = 55/388 (14%), Positives = 107/388 (27%), Gaps = 98/388 (25%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM--LKSLDVSFNSI 103
             Q+   A  N         N     +   +   L      + +       +L++    +
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
            + PD+    + L      +  L ELP ++ +   L     + N + +LP  +A  +++ 
Sbjct: 94  PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223
           +L +                            L  +PE + S                  
Sbjct: 154 ELSIRAC-----------------------PELTELPEPLASTD--------------AS 176

Query: 224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283
               G  +L    +    + +LPA +  L  L                        L + 
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNL----------------------KSLKIR 214

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
           N+ LS L P I  +  L +L L G                          P         
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALR-------------------NYPPI------- 248

Query: 344 TKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEAGEITKLDLSRNS-IQELPPELSS 401
                      L    K L L+  + L  +P +I    ++ KLDL     +  LP  ++ 
Sbjct: 249 -----FGGRAPL----KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 402 CASLQTLILSRNKIKDWPDAILTSLSSL 429
             +   +++  +           +  + 
Sbjct: 300 LPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  137 bits (347), Expect = 2e-36
 Identities = 65/363 (17%), Positives = 111/363 (30%), Gaps = 61/363 (16%)

Query: 196 LNGMPETIGSLSRLIRLDLH-QNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK 254
           +          S    L       +      +S        Y  +             + 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSAWRQANSNN 57

Query: 255 LGTLDLHSNQLKEYCVEACQLR---LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
                     LK                L+L +  L   P +  +++ L+ + +    L 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371
            L  ++           L                              + L+L    L A
Sbjct: 118 ELPDTMQQ------FAGL------------------------------ETLTLARNPLRA 141

Query: 372 IPSEIWEAGEITKLDLSR-NSIQELPPELSSCA---------SLQTLILSRNKIKDWPDA 421
           +P+ I     + +L +     + ELP  L+S           +LQ+L L    I+  P +
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQE 479
           I  +L +L  LK+ N+PL  +       +P L+ LDL     + + P    F     L+ 
Sbjct: 202 I-ANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKR 257

Query: 480 LYLRRM-QLREAPTDILRLQQLRILDLSQNS-LQSIPEGFKNLTSLTELDLSDNNISALP 537
           L L+    L   P DI RL QL  LDL     L  +P     L +   + +  +  + L 
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 538 PEL 540
              
Sbjct: 318 QHR 320

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  173 bits (439), Expect = 4e-47
 Identities = 76/314 (24%), Positives = 119/314 (37%), Gaps = 45/314 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+    L  +P+ +  +               +  L++  NN+  L         L  
Sbjct: 44  VLNVGESGLTTLPDCLPAH---------------ITTLVIPDNNLTSLPALPPE---LRT 85

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           L VS N+L+ LP     L  L         +  +P      + L K     NQL  LP  
Sbjct: 86  LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSLPVL 139

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                 L +   S+N + SLP      S++ KL    N+LT L        + L EL  S
Sbjct: 140 PP---GLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPMLP----SGLQELSVS 189

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N L  +P     L    +L  + NR+ S+P+  S    L E  +  N L++LP    +L
Sbjct: 190 DNQLASLPTLPSELY---KLWAYNNRLTSLPALPS---GLKELIVSGNRLTSLPVLPSEL 243

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312
            +   L +  N+L    +    L    L +  N L+ LP  +  +++   + L GNPL  
Sbjct: 244 KE---LMVSGNRLTSLPMLPSGLL--SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298

Query: 313 LRSSLVNGPTPALL 326
                +   T A  
Sbjct: 299 RTLQALREITSAPG 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  158 bits (401), Expect = 5e-42
 Identities = 95/460 (20%), Positives = 156/460 (33%), Gaps = 100/460 (21%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDV 98
             W  A   ++       ++K++  L N     VLNV  + L+ LP  +     + +L +
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNG--NAVLNVGESGLTTLPDCLPAH--ITTLVI 68

Query: 99  SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
             N++  +P        L   + S NQL  LP      L LS F      + +LP  L  
Sbjct: 69  PDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGL-- 123

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
                KL + GN+LT L          L EL  S N L  +P     L +L     + N+
Sbjct: 124 ----CKLWIFGNQLTSLPVLP----PGLQELSVSDNQLASLPALPSELCKL---WAYNNQ 172

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS 278
           + S+P   S    L E  + +N L++LP    +L KL                       
Sbjct: 173 LTSLPMLPS---GLQELSVSDNQLASLPTLPSELYKL----------------------- 206

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                NN L+ LP        L++L+++GN L +L         P L   L+        
Sbjct: 207 --WAYNNRLTSLPALPSG---LKELIVSGNRLTSL---------PVLPSELK-------- 244

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                                 EL + G  L+++P        +  L + RN +  LP  
Sbjct: 245 ----------------------ELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPES 279

Query: 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
           L   +S  T+ L  N + +     L  ++S               +   ++   L +   
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

Query: 459 SYNIASLPENPP-------FSSLPHLQELYLRRMQLREAP 491
            + + +    P        F    +     L   +L E  
Sbjct: 340 DWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE 379

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  148 bits (376), Expect = 1e-38
 Identities = 79/337 (23%), Positives = 128/337 (37%), Gaps = 74/337 (21%)

Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
            +    L++ ++ + ++P  +     +    + +N L++LPA   +L    TL++  NQL
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELR---TLEVSGNQL 93

Query: 266 KEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
               V    L  LS+       L  LP      + L KL + GN L +L         P 
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSL---------PV 138

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           L   L+                              ELS+    L+++P+      E+ K
Sbjct: 139 LPPGLQ------------------------------ELSVSDNQLASLPALP---SELCK 165

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L    N +  LP   S    LQ L +S N++   P       S L  L   NN L  +P+
Sbjct: 166 LWAYNNQLTSLPMLPSG---LQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA 218

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL 503
                   L+ L +S N + SLP          L+EL +   +L   P        L  L
Sbjct: 219 L----PSGLKELIVSGNRLTSLPV-----LPSELKELMVSGNRLTSLPMLP---SGLLSL 266

Query: 504 DLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
            + +N L  +PE   +L+S T ++L  N +S    + 
Sbjct: 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 303

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  142 bits (360), Expect = 2e-36
 Identities = 84/395 (21%), Positives = 129/395 (32%), Gaps = 75/395 (18%)

Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
                         +  + L+V  + LT L + L A    +T L+   N L  +P     
Sbjct: 26  GRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALPPE 82

Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L  L   ++  N++ S+P    G   L+ F      L ALP      S L  L +  NQL
Sbjct: 83  LRTL---EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQL 133

Query: 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               V    L+   L +S+N L+ LP    +   L KL    N L +L         P L
Sbjct: 134 TSLPVLPPGLQ--ELSVSDNQLASLPALPSE---LCKLWAYNNQLTSL---------PML 179

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385
              L+                              ELS+    L+++P+      E+ KL
Sbjct: 180 PSGLQ------------------------------ELSVSDNQLASLPTLP---SELYKL 206

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
               N +  LP   S    L+ LI+S N++   P       S L  L +  N L  +P  
Sbjct: 207 WAYNNRLTSLPALPSG---LKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLPML 259

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 504
                  L  L +  N +  LPE+     L     + L    L E     L  +++    
Sbjct: 260 ----PSGLLSLSVYRNQLTRLPES--LIHLSSETTVNLEGNPLSERTLQAL--REITSAP 311

Query: 505 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
                +        +    T           +P  
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (263), Expect = 5e-24
 Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 26/184 (14%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
             L +   NL+++P+      E+  L++S N +  LP        L         +   P
Sbjct: 64  TTLVIPDNNLTSLPALP---PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP 120

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
                  S L  L +  N L  +P       P LQ L +S N +ASLP          L 
Sbjct: 121 -------SGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA-----LPSELC 164

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
           +L+    QL   P        L+ L +S N L S+P      + L +L   +N +++LP 
Sbjct: 165 KLWAYNNQLTSLPMLP---SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA 218

Query: 539 ELVS 542
               
Sbjct: 219 LPSG 222

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 87.3 bits (216), Expect = 2e-18
 Identities = 36/168 (21%), Positives = 63/168 (37%), Gaps = 21/168 (12%)

Query: 376 IWEAGEITKLDLSRNSIQELPPELSSCA--SLQTLILSRNKIKDWPDAILTSLSSLSCLK 433
           +W A               +  ++ +C       L +  + +   PD +   +++L    
Sbjct: 11  VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLV--- 67

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPT 492
           + +N L  +P+      P L+ L++S N + SLP       L  L         L   P+
Sbjct: 68  IPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPS 121

Query: 493 DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
                  L  L +  N L S+P        L EL +SDN +++LP   
Sbjct: 122 ------GLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP 160

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.9 bits (171), Expect = 9e-13
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 511
             +L++  + + +LP+        H+  L +    L   P       +LR L++S N L 
Sbjct: 42  NAVLNVGESGLTTLPD----CLPAHITTLVIPDNNLTSLPALP---PELRTLEVSGNQLT 94

Query: 512 SIPEGFKNLTSLTELDLSDNNISALPPELVS 542
           S+P     L  L+       ++ ALP  L  
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPSGLCK 125

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  172 bits (438), Expect = 3e-46
 Identities = 116/553 (20%), Positives = 197/553 (35%), Gaps = 82/553 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED--LRNLPLL 70
            L LS   +R V    +                 LQ L L         +    RNLP L
Sbjct: 28  RLLLSFNYIRTVTASSFPFL------------EQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCSSNQL 126
            +L++  +K+  L   A   L  L  L + F  +           +  AL + D S NQ+
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 127 KELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT 184
           + L    S G+  +L     S+N I  + E       +  L  +      L+ N + S  
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-----LEPLQGKTLSFFSLAANSLYSRV 190

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
            +          N           L  LD+  N      +              +NA+S 
Sbjct: 191 SVDWGKCMNPFRN---------MVLEILDVSGNGWTVDITGNF-----------SNAISK 230

Query: 245 LPA-ELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSVLDLSNNSLSGLPPEI-GKMT 298
             A  L     +       + +K+          +  +  LDLS+  +  L   +   + 
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE-ASTTKEDLITMATRLSV 357
            L+ L L  N +  +      G     L+ L   L  N   E  S+    L  +      
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDN--LQVL--NLSYNLLGELYSSNFYGLPKV------ 340

Query: 358 TSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIK 416
               + L+  +++ I  + ++   ++  LDL  N++  +        S+  + LS NK+ 
Sbjct: 341 --AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLV 394

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSL 474
                +     + + + L  N L  +    F   +P LQIL L+ N  +S   +   S  
Sbjct: 395 T----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 475 PHLQELYLRRMQLREAPTDILR------LQQLRILDLSQNSLQSIPEG-FKNLTSLTELD 527
           P L++L+L    L+ A    L       L  L++L L+ N L S+P G F +LT+L  L 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 528 LSDNNISALPPEL 540
           L+ N ++ L    
Sbjct: 511 LNSNRLTVLSHND 523

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  164 bits (418), Expect = 1e-43
 Identities = 88/517 (17%), Positives = 166/517 (32%), Gaps = 98/517 (18%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103
            D +       N+ ++    + L     L +S N +  + A +   L  L+ L++     
Sbjct: 4   FDGRIAFYRFCNLTQV---PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 104 -MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSK 161
            + I                         +     NL      ++ I  L  D       
Sbjct: 61  PLTID----------------------KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 221
           + +L +    L+                               +L  L RLDL +N+I S
Sbjct: 99  LFELRLYFCGLSDAVLK---------------------DGYFRNLKALTRLDLSKNQIRS 137

Query: 222 IPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ----LRL 277
           +                      L    GKL+ L ++D  SNQ+   C    +      L
Sbjct: 138 LY---------------------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 278 SVLDLSNNSLSGLPP-------EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           S   L+ NSL               +   L  L ++GN      +   +        +  
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTS---KELSLEGMNLSAIPSEIWE-AGEITKLD 386
                   +             T   +     + L L    + ++ S ++E   ++  L+
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 387 LSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
           L+ N I ++  E      +LQ L LS N + +   +    L  ++ + L  N +  +   
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 504
            FK +  LQ LDL  N + ++        +P + +++L   +L   P   L       + 
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIH------FIPSIPDIFLSGNKLVTLPKINLTANL---IH 407

Query: 505 LSQNSLQSIPEG--FKNLTSLTELDLSDNNISALPPE 539
           LS+N L+++        +  L  L L+ N  S+   +
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  147 bits (373), Expect = 8e-38
 Identities = 105/566 (18%), Positives = 191/566 (33%), Gaps = 66/566 (11%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL---KEDLRNLPLL 70
           L+L +  +  +  + ++                L +L L    +          RNL  L
Sbjct: 78  LDLGSSKIYFLHPDAFQGLF------------HLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 71  TVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMKIPDEI---GSATALVKFDCSSNQ 125
           T L++S N++  L    + G+L+ LKS+D S N I  + +          L  F  ++N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 126 LKELPS-------SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
           L    S       +  R + L     S N  T                   N ++     
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS-----------NAISKSQAF 234

Query: 179 LIASWTMLTELIASKNLLNGMPETI---GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
            +     +       + +    +      + S +  LDL    + S+ S +      L  
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 235 FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLP 291
             +  N ++ +  E    L  L  L+L  N L E          +++ +DL  N ++ + 
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 292 PEI-GKMTTLRKLLLTGNPLRT------LRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
            +    +  L+ L L  N L T      +    ++G     L  +         SE    
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE---- 398
             D++    R+    + L L     S+   +   +    + +L L  N +Q         
Sbjct: 415 NLDILYFLLRVP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 399 --LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
                 + LQ L L+ N +   P  + + L++L  L L++N L  +  +       L+IL
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSIP 514
           D+S N    P    F SL  L   + + +   E  T  + L    + I     +     P
Sbjct: 532 DISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYP 591

Query: 515 EGFKNLTSLTELDLSDNNISALPPEL 540
           + F    SL  L     +   +   L
Sbjct: 592 DSFSG-VSLFSLSTEGCDEEEVLKSL 616

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.0 bits (239), Expect = 5e-21
 Identities = 58/285 (20%), Positives = 94/285 (32%), Gaps = 74/285 (25%)

Query: 272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS 331
           +C     +      +L+ +P  +    T  +LLL+ N +RT+ +S         L+ L+ 
Sbjct: 1   SCSFDGRIAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPF-----LEQLQ- 51

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 391
                                         L L                    L + + +
Sbjct: 52  -----------------------------LLELGSQYTP--------------LTIDKEA 68

Query: 392 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ--VPSDGFKD 449
            + LP       +L+ L L  +KI          L  L  L+L    L    +    F++
Sbjct: 69  FRNLP-------NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 450 IPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI---LRLQQLRILDL 505
           +  L  LDLS N I SL  +P F  L  L+ +     Q+          L+ + L    L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 506 SQNSLQSIPEG--------FKNLTSLTELDLSDNNISALPPELVS 542
           + NSL S            F+N+  L  LD+S N  +       S
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFS 225

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  164 bits (417), Expect = 5e-45
 Identities = 84/353 (23%), Positives = 138/353 (39%), Gaps = 48/353 (13%)

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-L 249
            +     +PE I   +    LDL +NRI ++     +    L E  +  N +SA+     
Sbjct: 19  HRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLT 306
             L  L TL L SN+LK   +        L+ LD+S N +  L   +   +  L+ L + 
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            N L  +     +G     L  L                               +L+LE 
Sbjct: 137 DNDLVYISHRAFSG-----LNSLE------------------------------QLTLEK 161

Query: 367 MNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILT 424
            NL++IP+E       +  L L   +I  +          L+ L +S     D       
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
              +L+ L + +  L  VP    + +  L+ L+LSYN I+++  +     L  LQE+ L 
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS-MLHELLRLQEIQLV 280

Query: 484 RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 534
             QL        R L  LR+L++S N L ++ E  F ++ +L  L L  N ++
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  144 bits (365), Expect = 8e-38
 Identities = 60/310 (19%), Positives = 112/310 (36%), Gaps = 48/310 (15%)

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEI 294
                A+P  +   ++   LDL  N++K   +   +      L  L+L+ N +S + P  
Sbjct: 20  RKRFVAVPEGI--PTETRLLDLGKNRIKT--LNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 295 -GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
              +  LR L L  N L+ +   +  G     L  L                        
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTG-----LSNLT----------------------- 107

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCASLQTLILS 411
                  +L +    +  +   +++    +  L++  N +  +     S   SL+ L L 
Sbjct: 108 -------KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
           +  +   P   L+ L  L  L+L +  +  +    FK +  L++L++S+        P  
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 472 SSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 529
               +L  L +    L   P   +R L  LR L+LS N + +I       L  L E+ L 
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 530 DNNISALPPE 539
              ++ + P 
Sbjct: 281 GGQLAVVEPY 290

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  137 bits (347), Expect = 2e-35
 Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 21/272 (7%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  +   +         +P  I   T  R L L  N ++TL            L+ L   
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFP--HLEEL--E 62

Query: 333 LPENEDSE-ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRN 390
           L EN  S        +L  +        + L L    L  IP  +      +TKLD+S N
Sbjct: 63  LNENIVSAVEPGAFNNLFNL--------RTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 391 SIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKD 449
            I  L   +     +L++L +  N +        + L+SL  L L+   L  +P++    
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 450 IPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRM-QLREAPTDILRLQQLRILDLSQ 507
           +  L +L L +  I ++ +   F  L  L+ L +     L     + L    L  L ++ 
Sbjct: 175 LHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 508 NSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
            +L ++P    ++L  L  L+LS N IS +  
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (333), Expect = 2e-33
 Identities = 67/323 (20%), Positives = 127/323 (39%), Gaps = 30/323 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           ++    +    VP  +                 + + L L  N I+ L +D   + P L 
Sbjct: 15  AVLCHRKRFVAVPEGI---------------PTETRLLDLGKNRIKTLNQDEFASFPHLE 59

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L ++ N +S +   A   L  L++L +  N +  IP  +    + L K D S N++  L
Sbjct: 60  ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              + + L NL   +  +N +  +     +  + + +L +E   LT +    ++    L 
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNALSAL 245
            L      +N + + +   L RL  L++     L  +  +     +L    + +  L+A+
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEI-GKMTT 299
           P   +  L  L  L+L  N +    +E   L    RL  + L    L+ + P     +  
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 300 LRKLLLTGNPLRTLRSSLVNGPT 322
           LR L ++GN L TL  S+ +   
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVG 320

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (279), Expect = 2e-26
 Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 20/261 (7%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDL-RNLPLLT 71
           +L L +  L+ +P  V+                 L KL ++ N I  L + + ++L  L 
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSN------------LTKLDISENKIVILLDYMFQDLYNLK 131

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L V  N L  +   A   L+ L+ L +   ++  IP E       L+        +  +
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 130 PS-SLGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              S  R   L   + +    + ++  +      ++ L +    LT +    +     L 
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
            L  S N ++ +  ++   L RL  + L   ++  +      G   L    +  N L+ L
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 246 PAEL-GKLSKLGTLDLHSNQL 265
              +   +  L TL L SN L
Sbjct: 312 EESVFHSVGNLETLILDSNPL 332

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  162 bits (413), Expect = 1e-44
 Identities = 83/442 (18%), Positives = 146/442 (33%), Gaps = 80/442 (18%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
            C +  L ++P                     LP  +      + +D+  N +  L+   
Sbjct: 16  ICINRGLHQVPE--------------------LPAHV------NYVDLSLNSIAELNETS 49

Query: 180 IASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
            +    L  L   +          T   LS LI L L  N+ L + +             
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA----------- 98

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGLPPE 293
                         L+ L  L L    L    +     +    L +L L +N++  + P 
Sbjct: 99  -----------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 294 I--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                M     L LT N ++++    +          LR  L      + +         
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR--LSSITLQDMNEYWLGWEKC 205

Query: 352 ATRLSVTS-KELSLEGMNLSAIPSE-IWEAGEITKL-------------DLSRNSIQELP 396
                 TS   L L G       ++  ++A   TK+                  + ++  
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 397 PELS---SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
                    + ++T  LS++KI     ++ +  + L  L L  N + ++  + F  +  L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 454 QILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQ 511
             L+LS N + S+     F +L  L+ L L    +R         L  L+ L L  N L+
Sbjct: 326 LKLNLSQNFLGSIDSRM-FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384

Query: 512 SIPEG-FKNLTSLTELDLSDNN 532
           S+P+G F  LTSL ++ L  N 
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (284), Expect = 3e-27
 Identities = 73/433 (16%), Positives = 138/433 (31%), Gaps = 73/433 (16%)

Query: 45  VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL--PAAIGELHMLKSLDVSFN 101
             +  + L+ N+I +L E     L  L  L V       +        L  L  L + +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCL-NLSDFKASNNCITSLPEDLA 157
             +++          L     +   L    L  +  + L +L      +N I  +     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 158 DCS--KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
             +  +   LD+  NK+  +    + +               G   T+  LS +   D++
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLN-------------FQGKHFTLLRLSSITLQDMN 196

Query: 216 QNRILSIPS-SISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQLKEYCV 270
           +  +      +     S+    +  N      A+        +K+ +L L ++       
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
                +    D  N +  GL       + ++   L+ + +  L  S       +    L 
Sbjct: 257 GHTNFK----DPDNFTFKGLEA-----SGVKTCDLSKSKIFALLKS-----VFSHFTDLE 302

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSR 389
                                         +L+L    ++ I     W    + KL+LS+
Sbjct: 303 ------------------------------QLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 390 NSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
           N +  +   +  +   L+ L LS N I+   D     L +L  L LD N L+ VP   F 
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 449 DIPMLQILDLSYN 461
            +  LQ + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 89.4 bits (222), Expect = 3e-19
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 45/302 (14%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               C +        N  L  +P        +  + L+ N +  L  +  +      L++
Sbjct: 4   GTSECSVIGYNAICINRGLHQVPELP---AHVNYVDLSLNSIAELNETSFSRLQ--DLQF 58

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDL 387
           L+  + +         + +     + L      L L+      + +  +     +  L L
Sbjct: 59  LK--VEQQTPG--LVIRNNTFRGLSSL----IILKLDYNQFLQLETGAFNGLANLEVLTL 110

Query: 388 SRNSIQE--LPPEL-SSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVP 443
           ++ ++    L         SL+ L+L  N IK   P +   ++     L L  N ++ + 
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170

Query: 444 SDGFK----------DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD 493
            +              +  + + D++       +         +  L L     +E+   
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 494 I--------------LRLQQLRILDLSQNSLQSIPEG-FKNL--TSLTELDLSDNNISAL 536
                          L             + +      FK L  + +   DLS + I AL
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290

Query: 537 PP 538
             
Sbjct: 291 LK 292

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           + L  N + ++    F  +  LQ L +       +  N  F  L  L  L L   Q  + 
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94

Query: 491 PTDIL-RLQQLRILDLSQNSLQS--IPEG-FKNLTSLTELDLSDNNISALPPE 539
            T     L  L +L L+Q +L    +    FK LTSL  L L DNNI  + P 
Sbjct: 95  ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 475 PHLQELYLRRMQLRE-APTDILRLQQLRILDLSQNSL-QSIPEG-FKNLTSLTELDLSDN 531
            H+  + L    + E   T   RLQ L+ L + Q +    I    F+ L+SL  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 532 NISALPPEL 540
               L    
Sbjct: 90  QFLQLETGA 98

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  160 bits (406), Expect = 2e-43
 Identities = 70/493 (14%), Positives = 167/493 (33%), Gaps = 54/493 (10%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
             +++ SL+     + ++              ++++L L+ N + ++    L     L +
Sbjct: 15  EKVTDSSLKQALASLRQSA------------WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           LN+S N L E    +  L  L++LD++ N +     E+    ++     ++N +  +  S
Sbjct: 63  LNLSSNVLYETL-DLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCS 117

Query: 133 LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELI 190
            G+     +   +NN IT L +      S++  LD++ N++  ++   L AS   L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
              N +  +   +   ++L  LDL  N++  +         +    + NN L  +   L 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRL-SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309
               L   DL  N      +     +   V  ++  ++  L  +  +  T+  L   G  
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA- 293

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
                   +  P    L  L+ +                             LS +G   
Sbjct: 294 ---YCCEDLPAPFADRLIALKRK-------------------------EHALLSGQGSET 325

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSS 428
             +  E        ++D  +   + +  ++     +  TL   +  + +       + + 
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 488
           L           ++     +  P+  +  +      +           +++  + + +  
Sbjct: 386 LDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

Query: 489 EAPTDILRLQQLR 501
           +   +  RL++L 
Sbjct: 446 QLAEENARLKKLN 458

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  146 bits (371), Expect = 1e-38
 Identities = 57/398 (14%), Positives = 126/398 (31%), Gaps = 51/398 (12%)

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRL 209
           ++ E   + ++     V  + L     +L  S   + EL  S N L+ +    +   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
             L+L  N +      +    +L    + NN +  L         + TL   +N +    
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115

Query: 270 VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               Q     + L+NN ++ L   + G  + ++ L L  N + T+  + +   +  L   
Sbjct: 116 CSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--- 171

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
                                          + L+L+   +  +  ++    ++  LDLS
Sbjct: 172 -------------------------------EHLNLQYNFIYDVKGQVV-FAKLKTLDLS 199

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            N +  + PE  S A +  + L  NK+     A+     +L    L  N         F 
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI------LRLQQLRI 502
                ++  ++                     +       + P         L+ ++  +
Sbjct: 259 S-KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317

Query: 503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
           L    +  + +    +N     E+D        +  ++
Sbjct: 318 LSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  132 bits (333), Expect = 2e-33
 Identities = 61/486 (12%), Positives = 130/486 (26%), Gaps = 117/486 (24%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKI-PDEIGSATALV 117
           + E  +N     +  V+ + L +  A++ +    +K LD+S N + +I   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN 177
             + SSN L E                          DL   S +  LD+  N +     
Sbjct: 62  LLNLSSNVLYETL------------------------DLESLSTLRTLDLNNNYVQ---- 93

Query: 178 NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
                                    +     +  L    N I  +  S          Y+
Sbjct: 94  ------------------------ELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYL 127

Query: 238 GNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQL---RLSVLDLSNNSLSGLPPE 293
            NN ++ L   + G  S++  LDL  N++              L  L+L  N +  +  +
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ 187

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +     L+ L L+ N L  +     +         +                        
Sbjct: 188 VV-FAKLKTLDLSSNKLAFMGPEFQS------AAGVT----------------------- 217

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN 413
                   +SL    L  I   +  +  +   DL  N             + +   +++ 
Sbjct: 218 -------WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSS 473
            +K          +  +           +P+     +  L+                   
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK------------------- 311

Query: 474 LPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 532
                 L  +  +      +     + R +D  +   +++ +       +   L+     
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

Query: 533 ISALPP 538
           +     
Sbjct: 372 LDEQVS 377

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  158 bits (401), Expect = 1e-42
 Identities = 86/464 (18%), Positives = 169/464 (36%), Gaps = 26/464 (5%)

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP 153
            +D S N ++ +P ++   T     + S N + EL +S +     L     S+N I  L 
Sbjct: 4   LVDRSKNGLIHVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 154 ED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLI 210
                   ++  LD+  NKL  +S         L  L  S N  + +P     G++S+L 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK---- 266
            L L    +           ++++  +          +   L    T  LH         
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 267 EYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            + ++     ++ L+LSN        +     ++   L T   L  L  + +     + +
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 327 KYL----RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN---LSAIPSEIWEA 379
           + L     + +     S      +           + K LS+  +         S I+E 
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 380 -GEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
              +   + + +  + +     S  +    L  S N + D        L+ L  L L  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 438 PLRQVP--SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494
            L+++   ++    +  LQ LD+S N ++   +    S    L  L +    L +     
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 495 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
           L   ++++LDL  N ++SIP+    L +L EL+++ N + ++P 
Sbjct: 419 L-PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  155 bits (394), Expect = 1e-41
 Identities = 100/528 (18%), Positives = 187/528 (35%), Gaps = 60/528 (11%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            ++ S   L  VP ++               +     L ++ N I +L   D+ +L  L 
Sbjct: 4   LVDRSKNGLIHVPKDL---------------SQKTTILNISQNYISELWTSDILSLSKLR 48

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
           +L +SHN++  L          L+ LD+S N ++KI         L   D S N    LP
Sbjct: 49  ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALP 106

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
                                + ++  + S++  L +    L   S   IA   +   L+
Sbjct: 107 ---------------------ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
                     E    L       LH     +          ++   + N  LS +   L 
Sbjct: 146 VLGETYGE-KEDPEGLQDFNTESLHIVFPTN--KEFHFILDVSVKTVANLELSNIKCVLE 202

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
                  L + +       +    L L+ ++ + NS   +   +   TT+    ++   L
Sbjct: 203 DNKCSYFLSILAKLQTNPKLS--NLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKL 259

Query: 311 RTLRSSLVNGPTPALLKYLR-SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
           +          +   LK L   ++  +      +   ++ +     + T     +  M  
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDA--ILTSL 426
            +  S          LD S N + +   E       L+TLIL  N++K+      + T +
Sbjct: 320 PSKISPF------LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485
            SL  L +  N +      G       L  L++S N   L +       P ++ L L   
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN--ILTDTIFRCLPPRIKVLDLHSN 431

Query: 486 QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 532
           +++  P  +++L+ L+ L+++ N L+S+P+G F  LTSL ++ L  N 
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  136 bits (343), Expect = 1e-34
 Identities = 83/439 (18%), Positives = 145/439 (33%), Gaps = 46/439 (10%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           D S N L  +P  L +   + +   S N I+ L   D+   SK+  L +  N++  L  +
Sbjct: 6   DRSKNGLIHVPKDLSQKTTILNI--SQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238
           +      L  L  S N L  +         L  LDL  N   ++P               
Sbjct: 64  VFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALP--------------- 106

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQLRLSVLDLSNNSLSGLPPEIG-- 295
                 +  E G +S+L  L L +  L++  V     L +S + L      G   +    
Sbjct: 107 ------ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 296 ---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352
                 +L  +  T      +    V       L  ++  L +N+ S   +    L T  
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE------LSSCASLQ 406
              ++T   +     +   I   +W    +    +S   +Q            +S  +L 
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASL 465
              +  +        I    S+++      +  R V       I     LD S N +   
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 466 PENPPFSSLPHLQELYLRRMQLREAPTDI---LRLQQLRILDLSQNSLQSI--PEGFKNL 520
                   L  L+ L L+  QL+E         +++ L+ LD+SQNS+            
Sbjct: 340 VFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 521 TSLTELDLSDNNISALPPE 539
            SL  L++S N ++     
Sbjct: 399 KSLLSLNMSSNILTDTIFR 417

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (253), Expect = 6e-23
 Identities = 93/484 (19%), Positives = 163/484 (33%), Gaps = 87/484 (17%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
           LN+S   + ++      +               L+ LI++HN I+ L     +    L  
Sbjct: 26  LNISQNYISELWTSDILSL------------SKLRILIISHNRIQYLDISVFKFNQELEY 73

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCSSNQLKELP 130
           L++SHNKL ++         LK LD+SFN+   +P   E G+ + L     S+  L++  
Sbjct: 74  LDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
                 LN+S             ED       +   +     T    + I   ++ T   
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 191 AS-----------------KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC---- 229
                                L         S   L  ++   N  + I   +       
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

Query: 230 ---------------------CSLAEFYM---GNNALSALPAEL-GKLSKLGTLDLHSNQ 264
                                 SL    +    ++      + +    S +   +   + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 265 LKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGP 321
            +   +           LD SNN L+    E  G +T L  L+L  N L+ L  S +   
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL--SKIAEM 369

Query: 322 TPAL--LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA--IPSEIW 377
           T  +  L+ L   + +N            ++   +    S   SL  +N+S+  +   I+
Sbjct: 370 TTQMKSLQQLD--ISQNS-----------VSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 378 EA--GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435
                 I  LDL  N I+ +P ++    +LQ L ++ N++K  PD I   L+SL  + L 
Sbjct: 417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476

Query: 436 NNPL 439
            NP 
Sbjct: 477 TNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 83.0 bits (205), Expect = 6e-17
 Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 30/183 (16%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPD 420
           +      L  +P ++  + + T L++S+N I EL    + S + L+ LI+S N+I+    
Sbjct: 5   VDRSKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
           ++      L  L L +N L ++      +   L+ LDLS+N   +LP    F ++     
Sbjct: 63  SVFKFNQELEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMS---- 115

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
                              QL+ L LS   L+          +++++ L          +
Sbjct: 116 -------------------QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

Query: 540 LVS 542
              
Sbjct: 157 PEG 159

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAIGELHMLKS---LDVSF 100
                L  ++N +     +   +L  L  L +  N+L EL         +KS   LD+S 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 101 NSIMKIPDEIG--SATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITSLPEDL 156
           NS+     +       +L+  + SSN L +      RCL   +      +N I S+P+ +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF---RCLPPRIKVLDLHSNKIKSIPKQV 440

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
                + +L+V  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (384), Expect = 2e-41
 Identities = 68/417 (16%), Positives = 151/417 (36%), Gaps = 77/417 (18%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              L      I ++     +L       +    ++++     EL  +  L V+   +  I
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I   T L   + + NQ+ ++   L   + L++     N IT +   L + + + +L 
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELY 116

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  + ++ +S                          + +L+++  L+L  N  LS  S +
Sbjct: 117 LNEDNISDISP-------------------------LANLTKMYSLNLGANHNLSDLSPL 151

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQLR-LSVLDLSN 284
           S    L    +  + +  +   +  L+ L +L L+ NQ+++  +     L  L       
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYV 208

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
           N ++ + P +  MT L  L +  N +  L S L N      L  L               
Sbjct: 209 NQITDITP-VANMTRLNSLKIGNNKITDL-SPLAN------LSQL--------------- 245

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
                            L +    +S I + + +  ++  L++  N I ++   L++ + 
Sbjct: 246 ---------------TWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISV-LNNLSQ 288

Query: 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           L +L L+ N++ +    ++  L++L+ L L  N +  +       +  +   D +  
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (376), Expect = 2e-40
 Identities = 80/398 (20%), Positives = 155/398 (38%), Gaps = 55/398 (13%)

Query: 139 LSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG 198
            +        I  +    AD ++  +  ++   +T +          +T+L+ +   +  
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58

Query: 199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTL 258
           +   I  L+ L  L+L+ N+I  I   +S    L   Y+G N ++ + A L  L+ L  L
Sbjct: 59  IQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLREL 115

Query: 259 DLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
            L+ + + +    A   ++  L+L  N        +  MT L  L +T + ++ + + + 
Sbjct: 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TPIA 174

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
           N      L  L                                LSL    +  I S +  
Sbjct: 175 N------LTDL------------------------------YSLSLNYNQIEDI-SPLAS 197

Query: 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
              +       N I ++ P +++   L +L +  NKI D     L +LS L+ L++  N 
Sbjct: 198 LTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254

Query: 439 LRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR- 496
           +  +     KD+  L++L++  N I+ +      ++L  L  L+L   QL     +++  
Sbjct: 255 ISDIN--AVKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 497 LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534
           L  L  L LSQN +  I     +L+ +   D ++  I 
Sbjct: 310 LTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  141 bits (358), Expect = 9e-38
 Identities = 75/378 (19%), Positives = 143/378 (37%), Gaps = 54/378 (14%)

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
           + L      +  +     A        +  K  +     T   L  + +L +   ++ SI
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD-VVTQEELESITKLVVAGEKVASI 59

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282
              I    +L    +  N ++ +   L  L KL  L + +N++ +         L  L L
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           + +++S + P +  +T +  L L  N   +  S L N      +  L             
Sbjct: 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSN------MTGL------------- 157

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
                              L++    +  +   I    ++  L L+ N I+++ P L+S 
Sbjct: 158 -----------------NYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDISP-LASL 198

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            SL       N+I D     + +++ L+ LK+ NN +  +      ++  L  L++  N 
Sbjct: 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQ 254

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNL 520
           I+ +        L  L+ L +   Q+ +  + +  L QL  L L+ N L +   E    L
Sbjct: 255 ISDIN---AVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 521 TSLTELDLSDNNISALPP 538
           T+LT L LS N+I+ + P
Sbjct: 311 TNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (314), Expect = 1e-31
 Identities = 61/243 (25%), Positives = 114/243 (46%), Gaps = 9/243 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L++L L  +NI  +   L NL  +  LN+  N      + +  +  L  L V+ + +  +
Sbjct: 112 LRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I + T L     + NQ++++ S L    +L  F A  N IT +   +A+ ++++ L 
Sbjct: 171 T-PIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLK 227

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  NK+T LS   +A+ + LT L    N ++ +   +  L++L  L++  N+I  I S +
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDI-SVL 283

Query: 227 SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           +    L   ++ NN L     E +G L+ L TL L  N + +    A   ++   D +N 
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343

Query: 286 SLS 288
            + 
Sbjct: 344 VIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (297), Expect = 2e-29
 Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L L  N+       L N+  L  L V+ +K+ ++   I  L  L SL +++N I  I
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI 192

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + S T+L  F    NQ+ ++   +     L+  K  NN IT L   LA+ S+++ L+
Sbjct: 193 S-PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLE 249

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSS 225
           +  N+++ ++   +   T L  L    N ++ +   + +LS+L  L L+ N++ +     
Sbjct: 250 IGTNQISDINA--VKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
           I G  +L   ++  N ++ +   L  LSK+ + D  +  +K+
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.4 bits (215), Expect = 1e-18
 Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 9/158 (5%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
             L      I ++ P  +  A     +L +  + D        L S++ L +    +  +
Sbjct: 3   ATLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI 59

Query: 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI 502
              G + +  L+ L+L+ N   + +  P S+L  L  LY+   ++ +  + +  L  LR 
Sbjct: 60  Q--GIEYLTNLEYLNLNGN--QITDISPLSNLVKLTNLYIGTNKITD-ISALQNLTNLRE 114

Query: 503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
           L L+++++  I     NLT +  L+L  N+  +    L
Sbjct: 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPL 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  151 bits (384), Expect = 3e-41
 Identities = 72/379 (18%), Positives = 134/379 (35%), Gaps = 62/379 (16%)

Query: 168 EGNKLTVLSNNLIASWTM-----LTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILS 221
               + + + ++   +          +    + +  +P   + S  ++  L+L+  +I  
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 83

Query: 222 IPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRL 277
           I +   +   ++ + YMG NA+  LP      +  L  L L  N L            +L
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143

Query: 278 SVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
           + L +SNN+L  +  +     T+L+ L L+ N L  +          +L+  L       
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------DLSLIPSLF------ 189

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                                     ++    LS +   I     + +LD S NSI  + 
Sbjct: 190 ------------------------HANVSYNLLSTLAIPI----AVEELDASHNSINVVR 221

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
             +     L  L L  N + D     L +   L  + L  N L ++    F  +  L+ L
Sbjct: 222 GPV--NVELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277

Query: 457 DLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
            +S N + +L        +P L+ L L    L     +  +  +L  L L  NS+ ++  
Sbjct: 278 YISNNRLVALNL--YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 335

Query: 516 GFKNLTSLTELDLSDNNIS 534
                 +L  L LS N+  
Sbjct: 336 S--THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  138 bits (349), Expect = 3e-36
 Identities = 71/430 (16%), Positives = 146/430 (33%), Gaps = 81/430 (18%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
               +  +     +VY  F++           + + +   ++ + KL    L +   + +
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDIT-------LNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 73  LNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
           LN++  ++ E+   A    H ++ L + FN+I  +P  +  +   L       N L  LP
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
             +                        +  K++ L +  N L  + ++   + T L  L 
Sbjct: 134 RGI----------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
            S N L  +   +  +  L   ++  N + ++   I    ++ E    +N+++ +   + 
Sbjct: 172 LSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPV- 224

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
              +L  L L  N L +         L  +DLS N L  +      KM  L +L ++ N 
Sbjct: 225 -NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
           L  L            +  L+                               L L   +L
Sbjct: 284 LVALNLYGQP------IPTLK------------------------------VLDLSHNHL 307

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429
             +     +   +  L L  NSI  L    S+  +L+ L LS N      +++     ++
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSHNDWD--CNSLRALFRNV 363

Query: 430 SCLKLDNNPL 439
           +   +D+   
Sbjct: 364 ARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (346), Expect = 8e-36
 Identities = 67/400 (16%), Positives = 132/400 (33%), Gaps = 56/400 (14%)

Query: 64  LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCS 122
             ++ +       +    ++      L+  K +    +++ K+P  +  S   +   + +
Sbjct: 23  FYDVHIDMQTQDVYFGFEDIT-----LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 123 SNQLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLI 180
             Q++E+ + +      +       N I  LP     +   ++ L +E N L+ L   + 
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137

Query: 181 ASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
            +   LT L  S N L  +  +T  + + L  L L  NR+  +   +S   SL    +  
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSY 195

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
           N LS L         +  LD   N +           L++L L +N+L+     +     
Sbjct: 196 NLLSTLA----IPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNNLTDTA-WLLNYPG 249

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           L ++ L+ N L  +            ++ L                              
Sbjct: 250 LVEVDLSYNELEKIMYHPFVK-----MQRLE----------------------------- 275

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
             L +    L A+         +  LDLS N +  +         L+ L L  N I    
Sbjct: 276 -RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDL 458
            +   +L +   L L +N          F+++    + D 
Sbjct: 335 LSTHHTLKN---LTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (343), Expect = 2e-35
 Identities = 64/316 (20%), Positives = 115/316 (36%), Gaps = 53/316 (16%)

Query: 231 SLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSL 287
           +       N+ +  LPA  L    ++  L+L+  Q++E    A      +  L +  N++
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

Query: 288 SGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
             LPP +   +  L  L+L  N L +L   + +         L                 
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN-----TPKL----------------- 143

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCASL 405
                          LS+   NL  I  + ++A   +  L LS N +  +    S   SL
Sbjct: 144 -------------TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSL 188

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465
               +S N +       L    ++  L   +N +  V      +   L IL L +N  +L
Sbjct: 189 FHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHN--NL 238

Query: 466 PENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEGFKNLTSLT 524
            +     + P L E+ L   +L +        +Q+L  L +S N L ++    + + +L 
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 298

Query: 525 ELDLSDNNISALPPEL 540
            LDLS N++  +    
Sbjct: 299 VLDLSHNHLLHVERNQ 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (301), Expect = 1e-29
 Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 24/277 (8%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L L    L  +P  ++ N               L  L +++NN+E++++D  +    L 
Sbjct: 121 VLVLERNDLSSLPRGIFHN------------TPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            L +S N+L+ +   +  +  L   +VS+N +  +   I    A+ + D S N +  +  
Sbjct: 169 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRG 222

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
            +   + L+  K  +N +T     L +   + ++D+  N+L  +  +       L  L  
Sbjct: 223 PV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
           S N L  +      +  L  LDL  N +L +  +      L   Y+ +N++  L   L  
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LST 337

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L  L L  N      + A    ++   + +    
Sbjct: 338 HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  146 bits (371), Expect = 5e-40
 Identities = 55/299 (18%), Positives = 117/299 (39%), Gaps = 24/299 (8%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
             +++ SL+     + ++              ++++L L+ N + ++    L     L +
Sbjct: 15  EKVTDSSLKQALASLRQSA------------WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           LN+S N L E    +  L  L++LD++ N +     E+    ++     ++N +  +  S
Sbjct: 63  LNLSSNVLYETLD-LESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCS 117

Query: 133 LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELI 190
            G+     +   +NN IT L +      S++  LD++ N++  ++   L AS   L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
              N +  +   +   ++L  LDL  N++  +         +    + NN L  +   L 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRL-SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
               L   DL  N      +     +   V  ++  ++  L  +  +  T+  L   G 
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  134 bits (340), Expect = 1e-35
 Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 15/260 (5%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKIP-DEIGSATALV 117
           + E  +N     +  V+ + L +  A++ +    +K LD+S N + +I   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN 177
             + SSN L E    L     L     +NN +  L         +  L    N ++ +S 
Sbjct: 62  LLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC 116

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE 234
           +          +  + N +  + +   G  SR+  LDL  N I  ++     +   +L  
Sbjct: 117 SRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE 293
             +  N +  +  ++   +KL TLDL SN+L     E      ++ + L NN L  +   
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 294 IGKMTTLRKLLLTGNPLRTL 313
           +     L    L GN     
Sbjct: 233 LRFSQNLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  129 bits (327), Expect = 9e-34
 Identities = 51/267 (19%), Positives = 100/267 (37%), Gaps = 46/267 (17%)

Query: 276 RLSVLDLSNNSLSGLPPEIGK-MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           R  +  ++++SL      + +    +++L L+GNPL  +                     
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI--------------------- 49

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394
                         +   T+L    + L+L    L     ++     +  LDL+ N +QE
Sbjct: 50  ----------SAADLAPFTKL----ELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE 94

Query: 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454
           L        S++TL  + N I     +      ++    L NN +  +          +Q
Sbjct: 95  LLV----GPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147

Query: 455 ILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI 513
            LDL  N I ++      +S   L+ L L+   + +    ++   +L+ LDLS N L  +
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFM 206

Query: 514 PEGFKNLTSLTELDLSDNNISALPPEL 540
              F++   +T + L +N +  +   L
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKAL 233

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  129 bits (326), Expect = 9e-34
 Identities = 54/301 (17%), Positives = 85/301 (28%), Gaps = 51/301 (16%)

Query: 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPE-IGKMTTL 300
           A+       ++     +  + LK+      Q    +  LDLS N LS +    +   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
             L L+ N L               L  LR                              
Sbjct: 61  ELLNLSSNVLYET-------LDLESLSTLR------------------------------ 83

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
            L L    +  +         I  L  + N+I  +          + + L+ NKI    D
Sbjct: 84  TLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRD 137

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
                 S +  L L  N +  V           L+ L+L YN I  +           L+
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ---VVFAKLK 194

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            L L   +L     +      +  + L  N L  I +  +   +L   DL  N       
Sbjct: 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 539 E 539
            
Sbjct: 255 R 255

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (316), Expect = 2e-32
 Identities = 54/362 (14%), Positives = 114/362 (31%), Gaps = 49/362 (13%)

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRL 209
           ++ E   + ++     V  + L     +L  S   + EL  S N L+ +    +   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
             L+L  N +      +    +L    + NN +  L         + TL   +N +    
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115

Query: 270 VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               Q     + L+NN ++ L   + G  + ++ L L  N + T+  + +   +  L   
Sbjct: 116 CSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--- 171

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
                                          + L+L+   +  +  ++    ++  LDLS
Sbjct: 172 -------------------------------EHLNLQYNFIYDVKGQV-VFAKLKTLDLS 199

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            N +  + PE  S A +  + L  NK+     A+     +L    L  N         F 
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN 508
                ++  ++                     +       + P         R++ L  +
Sbjct: 259 S-KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHH 313

Query: 509 SL 510
             
Sbjct: 314 HH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  121 bits (306), Expect = 6e-31
 Identities = 56/349 (16%), Positives = 110/349 (31%), Gaps = 53/349 (15%)

Query: 198 GMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKL 255
            + E   + +R     +  + +    +S+     ++ E  +  N LS + A  L   +KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 256 GTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315
             L+L SN L E         L  LDL+NN +  L        ++  L    N +  +  
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC 116

Query: 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS- 374
           S   G                                       K + L    ++ +   
Sbjct: 117 SRGQG--------------------------------------KKNIYLANNKITMLRDL 138

Query: 375 EIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
           +      +  LDL  N I  +      +S  +L+ L L  N I D         + L  L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTL 196

Query: 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAP 491
            L +N L  +  + F+    +  + L  N +  + +        +L+   LR        
Sbjct: 197 DLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGT 253

Query: 492 TDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
                 +  R+  +++ +++ +    +   ++  L           P  
Sbjct: 254 LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  147 bits (372), Expect = 3e-38
 Identities = 67/404 (16%), Positives = 126/404 (31%), Gaps = 72/404 (17%)

Query: 143 KASNNCITSLPEDLADCSKMSKLDV-EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
           +   N     PE     S +    V     + + + ++   +  +T              
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-------------- 49

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLD 259
               L+    +    + +  +P+++      +    + +  +  +          +  L 
Sbjct: 50  ----LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY 105

Query: 260 LHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSS 316
           +  N ++       Q    L+VL L  N LS LP  I      L  L ++ N L  +   
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165

Query: 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI 376
                       L+                               L L    L+ +   +
Sbjct: 166 TFQA-----TTSLQ------------------------------NLQLSSNRLTHVDLSL 190

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
                +   ++S N +  L   ++    ++ L  S N I      +   L+ L    L +
Sbjct: 191 IP--SLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTILK---LQH 241

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL 495
           N L         + P L  +DLSYN +  +  +P F  +  L+ LY+   +L        
Sbjct: 242 NNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVALNLYGQ 298

Query: 496 RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
            +  L++LDLS N L  +         L  L L  N+I  L   
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 342

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  133 bits (335), Expect = 2e-33
 Identities = 79/488 (16%), Positives = 160/488 (32%), Gaps = 58/488 (11%)

Query: 56  NIEKLKEDLRNLPLLTV-----LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
              + K    NL    V     +++    +      I  L+  K +    +++ K+P  +
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAAL 70

Query: 111 -GSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPEDL-ADCSKMSKLDV 167
             S   +   + +  Q++E+ + +      +       N I  LP  +  +   ++ L +
Sbjct: 71  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSI 226
           E N L+ L   +  +   LT L  S N L  +  +T  + + L  L L  NR+  +   +
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--L 188

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           S   SL    +  N LS L         +  LD   N +           L++L L +N+
Sbjct: 189 SLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNN 243

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           L+     +     L ++ L+ N L  +            ++ L                 
Sbjct: 244 LTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK-----MQRLE---------------- 281

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                          L +    L A+         +  LDLS N +  +         L+
Sbjct: 282 --------------RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDLSYNIA-S 464
            L L  N I     +   +L +   L L +N          F+++    + D   +    
Sbjct: 328 NLYLDHNSIVTLKLSTHHTLKN---LTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384

Query: 465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLT 524
                        +    R +Q     + + ++Q+ +    + +++ S+      +T   
Sbjct: 385 YQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQG 444

Query: 525 ELDLSDNN 532
            + L  N 
Sbjct: 445 GVPLQGNE 452

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 79.6 bits (196), Expect = 7e-16
 Identities = 58/405 (14%), Positives = 116/405 (28%), Gaps = 28/405 (6%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            L+ S+ S+  V   V                  L  L L HNN+      L N P L  
Sbjct: 215 ELDASHNSINVVRGPVNVE---------------LTILKLQHNNLTDT-AWLLNYPGLVE 258

Query: 73  LNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
           +++S+N+L ++      ++  L+ L +S N ++ +         L   D S N L  +  
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER 318

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
           +  +   L +    +N I +L         +  L +  N     S   +        +  
Sbjct: 319 NQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 376

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
           +        +    L        + +R+L   +  S    +       +A   + +    
Sbjct: 377 ADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSL 436

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
              +        Q  E      QL   V +L          +I +   L+ L    +   
Sbjct: 437 SHYITQQGGVPLQGNE------QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNL 490

Query: 312 TLRSSLVNG---PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
                  +G    +  L K               T        A +      E     + 
Sbjct: 491 RRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALE 550

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN 413
                    +A    +  L R  +++L  + +     + +    +
Sbjct: 551 KQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHH 595

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  142 bits (361), Expect = 2e-37
 Identities = 80/437 (18%), Positives = 157/437 (35%), Gaps = 43/437 (9%)

Query: 47  LQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
               + A   ++         L  LT L+  ++ ++++   I +L  L  L  + N+I  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT 78

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   +   T L    C SN+L  L   +     L+      N +T L   ++    ++ L
Sbjct: 79  LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +   N LT +    ++  T LTEL    N      + +   ++L  LD   N+I  +   
Sbjct: 133 NCARNTLTEID---VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-- 186

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           +S    L       N ++ L   L +  +L  LD  SN+L E  V     +L+  D S N
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLT-QLTYFDCSVN 243

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            L+ L   +  ++ L  L      L  +  +               +L   +       K
Sbjct: 244 PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNT------------QLIYFQAEGCRKIK 289

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           E  +T  T+L      L  +   ++ +   + +  ++  L L+   + EL   +S    L
Sbjct: 290 ELDVTHNTQL----YLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKL 341

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465
           ++L      I+D+    +  + +L+           +P +   +      + +S ++   
Sbjct: 342 KSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNN--SLTIAVSPDLLDQ 397

Query: 466 PENPPFSSLPHLQELYL 482
             NP             
Sbjct: 398 FGNPMNIEPGDGGVYDQ 414

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  126 bits (319), Expect = 9e-32
 Identities = 78/428 (18%), Positives = 140/428 (32%), Gaps = 69/428 (16%)

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
            V           +  S  +   L+     N+ IT +   +   + ++KL    N +T L
Sbjct: 23  EVAAAFEMQATDTI--SEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL 79

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
               ++  T LT L    N L  +   +  L++L  L+   N++  +   +S    L   
Sbjct: 80  D---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG 295
               N L+ +   +   ++L  LD H N+         Q +L+ LD S N ++ L   + 
Sbjct: 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VS 188

Query: 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355
           +   L +L    N +    + L       L                              
Sbjct: 189 QNKLLNRLNCDTNNI----TKLDLNQNIQL------------------------------ 214

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
                 L      L+ I   +    ++T  D S N + EL   +S+ + L TL   +  +
Sbjct: 215 ----TFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDL 266

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
            +      T L             R++          L +LD     I  L      S  
Sbjct: 267 LEIDLTHNTQLIYFQA-----EGCRKIKELDVTHNTQLYLLDCQAAGITELD----LSQN 317

Query: 475 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534
           P L  LYL   +L E   D+    +L+ L      +Q        + +L     ++    
Sbjct: 318 PKLVYLYLNNTELTE--LDVSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTI 374

Query: 535 ALPPELVS 542
            +P E ++
Sbjct: 375 TMPKETLT 382

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.2 bits (245), Expect = 5e-22
 Identities = 52/254 (20%), Positives = 90/254 (35%), Gaps = 21/254 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L    NNI KL  DL     LT L+ S NKL+E+   +  L  L   D S N + ++
Sbjct: 193 LNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL 248

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + + L    C    L E+   L     L  F+A          D+   +++  LD
Sbjct: 249 D--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL-DVTHNTQLYLLD 303

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            +   +T L    ++    L  L  +   L  +   +   ++L  L      I     S+
Sbjct: 304 CQAAGITELD---LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-SV 357

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKL------GTLDLHSNQLKEYCVEACQLRLSVL 280
               +L   +        +P E    + L        LD   N +     +      +  
Sbjct: 358 GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

Query: 281 DLSNNSLSGLPPEI 294
            ++  +LS   P +
Sbjct: 418 TITWENLSTDNPAV 431

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  144 bits (364), Expect = 3e-37
 Identities = 101/530 (19%), Positives = 185/530 (34%), Gaps = 66/530 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            ++ SNR+L  VP ++                   + L L+ N+I +L+  D+  L  L 
Sbjct: 35  MVDYSNRNLTHVPKDL---------------PPRTKALSLSQNSISELRMPDISFLSELR 79

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
           VL +SHN++  L   +      L+ LDVS N +  I        +L   D S N    LP
Sbjct: 80  VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDLSFNDFDVLP 137

Query: 131 SS--LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                G    L+    S      L         +S + ++     +      +     T 
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           ++      N +     ++S      L  + I     +     +          L  +  +
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
             + +   ++ L                +  L++ N +++             +   +  
Sbjct: 258 HIETTWKCSVKLFQFFWPRP--------VEYLNIYNLTITERID-------REEFTYSET 302

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L++L                   +       +      +        ++  +     M 
Sbjct: 303 ALKSLM---------------IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC-ASLQTLILSRNKIKDWPDA--ILTS 425
               PS        T L+ ++N   +   +  S    LQTLIL RN +K++     +  +
Sbjct: 348 CPPSPS------SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLP-HLQELYLR 483
           +SSL  L +  N L     D        + +L+LS N   L  +  F  LP  ++ L L 
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN--MLTGS-VFRCLPPKVKVLDLH 458

Query: 484 RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 532
             ++   P D+  LQ L+ L+++ N L+S+P+G F  LTSL  + L DN 
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  129 bits (327), Expect = 2e-32
 Identities = 81/433 (18%), Positives = 148/433 (34%), Gaps = 45/433 (10%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI- 203
           SN  +T +P+DL    +   L +  N ++ L    I+  + L  L  S N +  +   + 
Sbjct: 39  SNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
                L  LD+  NR+ +I        SL    +  N    LP   E G L+KL  L L 
Sbjct: 97  LFNQDLEYLDVSHNRLQNISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154

Query: 262 SNQLKE---YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
           + + ++     V    L   +LDL +  + G   E  ++     L L  +P       + 
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 319 NGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
                     L + +L +       T   +L    T L+VT + +         +    W
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 378 EAGEITKLDLSRNSIQELPP------ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431
               +  L++   +I E           ++  SL    +         +A+ +  + ++ 
Sbjct: 275 PR-PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 491
             L  +    +             L+ + N+ +       S+L  LQ L L+R  L+   
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 492 TDILRLQQLRILDLSQNSLQSIPEG--------------------------FKNLT-SLT 524
              L  + +  L+    SL S+                             F+ L   + 
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVK 453

Query: 525 ELDLSDNNISALP 537
            LDL +N I ++P
Sbjct: 454 VLDLHNNRIMSIP 466

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.5 bits (227), Expect = 9e-20
 Identities = 60/344 (17%), Positives = 107/344 (31%), Gaps = 43/344 (12%)

Query: 211 RLDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            L L QN I  +    IS    L    + +N + +L   +      L  LD+  N+L+  
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN- 114

Query: 269 CVEACQL-RLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLR-SSLVNGPTPA 324
            +  C +  L  LDLS N    LP   E G +T L  L L+    R L    + +     
Sbjct: 115 -ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSC 173

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           +L  L S   +  ++E+    +   T    L      L    +N+S       +   I  
Sbjct: 174 ILLDLVSYHIKGGETESL---QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKD---WPDAILTSLSSLSCLKLDNNPLRQ 441
            D +   +     EL+   +L  + L   +                 +  L + N  + +
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 442 VPSDGFKD-----IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR 496
                        +  L I  +   +    +   +S    +                   
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN------------------ 332

Query: 497 LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 539
                I  LS +    I      + +S T L+ + N  +    +
Sbjct: 333 -----IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.8 bits (202), Expect = 1e-16
 Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 9/143 (6%)

Query: 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
            S      +  S   +   P  +     +LS   L  N + ++       +  L++L LS
Sbjct: 28  FSNELESMVDYSNRNLTHVPKDLPPRTKALS---LSQNSISELRMPDISFLSELRVLRLS 84

Query: 460 YN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-- 516
           +N I SL  +  F     L+ L +   +L+        +  LR LDLS N    +P    
Sbjct: 85  HNRIRSLDFHV-FLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKE 141

Query: 517 FKNLTSLTELDLSDNNISALPPE 539
           F NLT LT L LS      L   
Sbjct: 142 FGNLTKLTFLGLSAAKFRQLDLL 164

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  134 bits (340), Expect = 1e-34
 Identities = 57/275 (20%), Positives = 100/275 (36%), Gaps = 44/275 (16%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  + S +  +   LS +P  I   +  R L L  N ++ +++          L +L   
Sbjct: 52  CSNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRH-----LHHLE-- 102

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNS 391
                                        L L   ++  I          +  L+L  N 
Sbjct: 103 ----------------------------VLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKD 449
           +  +P       + L+ L L  N I+  P      + SL  L L +   L  +    F+ 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQN 508
           +  L+ L+L     ++ + P  + L  L+EL +      E        L  L+ L +  +
Sbjct: 195 LFNLKYLNLGMC--NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 509 SLQSIPEG-FKNLTSLTELDLSDNNISALPPELVS 542
            +  I    F  L SL EL+L+ NN+S+LP +L +
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (294), Expect = 2e-28
 Identities = 61/284 (21%), Positives = 115/284 (40%), Gaps = 46/284 (16%)

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
           ++  ++   +  +  +P  I    +     +  N +  + A+    L  L  L L  N +
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 266 KEYCVEA-CQL-RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           ++  V A   L  L+ L+L +N L+ +P      ++ LR+L L  NP+ ++ S   N   
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR-- 169

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEA-G 380
              +  L                                L L  +  L  I    +E   
Sbjct: 170 ---VPSLM------------------------------RLDLGELKKLEYISEGAFEGLF 196

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L+L   +I+++P  L+    L+ L +S N   +        LSSL  L + N+ + 
Sbjct: 197 NLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  + F  +  L  L+L++N ++SLP +  F+ L +L EL+L 
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHD-LFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (268), Expect = 5e-25
 Identities = 60/271 (22%), Positives = 105/271 (38%), Gaps = 36/271 (13%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
                +  + R L +VP  +  N                + L L  NNI+ ++ D  R+L
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSN---------------TRYLNLMENNIQMIQADTFRHL 98

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             L VL +  N + ++   A   L  L +L++  N +  IP       + L +    +N 
Sbjct: 99  HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158

Query: 126 LKELPS-------SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSN 177
           ++ +PS       SL   L+L +       +  + E        +  L++    +  + N
Sbjct: 159 IESIPSYAFNRVPSL-MRLDLGE----LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEF 235
             +     L EL  S N    +   +   LS L +L +  +++  I   +  G  SL E 
Sbjct: 214 --LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            + +N LS+LP +    L  L  L LH N  
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.9 bits (244), Expect = 5e-22
 Identities = 54/302 (17%), Positives = 98/302 (32%), Gaps = 66/302 (21%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETI 203
           +   ++ +P+ +   S    L++  N + ++  +       L  L   +N +        
Sbjct: 62  TRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119

Query: 204 GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDL- 260
             L+ L  L+L  N +  IPS        L E ++ NN + ++P+    ++  L  LDL 
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
              +L+               +S  +  GL         L+ L L    ++ +       
Sbjct: 180 ELKKLEY--------------ISEGAFEGLF-------NLKYLNLGMCNIKDM------- 211

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEA 379
           P    L  L                               EL + G +   I        
Sbjct: 212 PNLTPLVGLE------------------------------ELEMSGNHFPEIRPGSFHGL 241

Query: 380 GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             + KL +  + +  +        ASL  L L+ N +   P  + T L  L  L L +NP
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

Query: 439 LR 440
             
Sbjct: 302 WN 303

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  130 bits (330), Expect = 2e-34
 Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 40/277 (14%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   C    + +  ++  L+ +P  I   ++  +L L  N L++L   + +  T   L  
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT--QLTK 56

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L   L  N            ++                 +     S       +  LDLS
Sbjct: 57  L--SLSSNG-----------LSF----------KGCCSQSDFGTTS-------LKYLDLS 86

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N +  +         L+ L    + +K     ++  SL +L  L + +   R   +  F
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 448 KDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILD 504
             +  L++L ++ N    +   +  F+ L +L  L L + QL +        L  L++L+
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 505 LSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 540
           +S N+  S+    +K L SL  LD S N+I     + 
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  112 bits (283), Expect = 6e-28
 Identities = 57/283 (20%), Positives = 100/283 (35%), Gaps = 45/283 (15%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYC 269
            +  +   + S+P+ I    S     + +N L +LP     KL++L  L L SN L    
Sbjct: 11  EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
             +        L  LDLS N +  +      +  L  L    + L+ +          ++
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-------SEFSV 121

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITK 384
              LR+                       L      L +   +     + I+     +  
Sbjct: 122 FLSLRN-----------------------L----IYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 385 LDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           L ++ NS QE       +   +L  L LS+ +++        SLSSL  L + +N    +
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRR 484
            +  +K +  LQ+LD S N I +  +         L  L L +
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (254), Expect = 4e-24
 Identities = 57/307 (18%), Positives = 92/307 (29%), Gaps = 64/307 (20%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  +++ L  VP  +  +                 +L L  N ++ L       L  LT
Sbjct: 11  EIRCNSKGLTSVPTGIPSS---------------ATRLELESNKLQSLPHGVFDKLTQLT 55

Query: 72  VLNVSHNKLSELPAAIGE---LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE 128
            L++S N LS              LK LD+SFN ++ +         L   D   + LK+
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 129 LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
           +                                +  LD+      V  N +    + L  
Sbjct: 116 MSE---------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 189 LIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
           L  + N       P+    L  L  LDL Q ++  +  +  +   SL    M +N   +L
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
                  L+ L  LD   N +                     L   P      ++L  L 
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMT--------------SKKQELQHFP------SSLAFLN 254

Query: 305 LTGNPLR 311
           LT N   
Sbjct: 255 LTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.4 bits (230), Expect = 6e-21
 Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 18/207 (8%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C+S  L  +P+ +      L L      +N + SLP       ++++KL +  N L+  
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLEL-----ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 176 SNNLIASW--TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS--ISGCCS 231
                + +  T L  L  S N +  M      L +L  LD   + +  +          +
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 232 LAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSL 287
           L    + +             LS L  L +  N  +E  +         L+ LDLS   L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 288 SGLPPEI-GKMTTLRKLLLTGNPLRTL 313
             L P     +++L+ L ++ N   +L
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSL 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  129 bits (326), Expect = 5e-34
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 7/192 (3%)

Query: 355 LSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSR 412
           +   S+ + L G  +S +P+        +T L L  N +  +     +  A L+ L LS 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 413 N-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 470
           N +++    A    L  L  L LD   L+++    F+ +  LQ L L  N + +LP++  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT- 148

Query: 471 FSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDL 528
           F  L +L  L+L   ++   P    R L  L  L L QN +  +    F++L  L  L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 529 SDNNISALPPEL 540
             NN+SALP E 
Sbjct: 209 FANNLSALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  119 bits (301), Expect = 2e-30
 Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
                 +  +Q +P  +   A+ Q + L  N+I   P A   +  +L+ L L +N L ++
Sbjct: 14  VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 443 PSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQ 499
            +  F  + +L+ LDLS N  + S+     F  L  L  L+L R  L+E    + R L  
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 500 LRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
           L+ L L  N+LQ++P+  F++L +LT L L  N IS++P 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  105 bits (264), Expect = 1e-25
 Identities = 58/261 (22%), Positives = 86/261 (32%), Gaps = 65/261 (24%)

Query: 277 LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335
              + L  N +S +P         L  L L  N L  + ++   G     L  L      
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-----LALLE----- 83

Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEG-MNLSAIPSEIWEA-GEITKLDLSRNSIQ 393
                                    +L L     L ++    +   G +  L L R  +Q
Sbjct: 84  -------------------------QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 394 ELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
           EL P      A+LQ L L  N ++  PD     L +L+ L L  N +  VP   F+ +  
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 511
           L  L L  N +A +  +  F  L  L                         L L  N+L 
Sbjct: 179 LDRLLLHQNRVAHVHPHA-FRDLGRLMT-----------------------LYLFANNLS 214

Query: 512 SIPEG-FKNLTSLTELDLSDN 531
           ++P      L +L  L L+DN
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (251), Expect = 9e-24
 Identities = 60/278 (21%), Positives = 95/278 (34%), Gaps = 64/278 (23%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
               Q  + ++P  I    +    ++  N +S +PA        L  L LHSN L     
Sbjct: 16  TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--- 70

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYL 329
                      +   + +GL         L +L L+ N  LR++  +  +G     L  L
Sbjct: 71  -----------IDAAAFTGLA-------LLEQLDLSDNAQLRSVDPATFHG-----LGRL 107

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 388
                                           L L+   L  +   ++     +  L L 
Sbjct: 108 H------------------------------TLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 389 RNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N++Q LP +      +L  L L  N+I   P+     L SL  L L  N +  V    F
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRR 484
           +D+  L  L L  N +++LP     + L  LQ L L  
Sbjct: 198 RDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.0 bits (242), Expect = 1e-22
 Identities = 59/264 (22%), Positives = 91/264 (34%), Gaps = 44/264 (16%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
               + +   + L+ VP  +                   Q++ L  N I  +     R  
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRAC 55

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
             LT+L +  N L+ + A A   L +L+ LD+S N                       QL
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN----------------------AQL 93

Query: 127 KELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWT 184
           + +  +       L         +  L        + +  L ++ N L  L ++      
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 185 MLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNAL 242
            LT L    N ++ +PE     L  L RL LHQNR+  +          L   Y+  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 243 SALPAE-LGKLSKLGTLDLHSNQL 265
           SALP E L  L  L  L L+ N  
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.6 bits (228), Expect = 9e-21
 Identities = 49/204 (24%), Positives = 74/204 (36%), Gaps = 14/204 (6%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
            C    L+ +P  +             N I+ +P      C  ++ L +  N L  +   
Sbjct: 17  SCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 179 LIASWTMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEF 235
                 +L +L  S N       P T   L RL  L L +  +  +   +  G  +L   
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGL 290
           Y+ +NAL ALP +    L  L  L LH N++    V     R    L  L L  N ++ +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 291 PPEI-GKMTTLRKLLLTGNPLRTL 313
            P     +  L  L L  N L  L
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 54/255 (21%), Positives = 86/255 (33%), Gaps = 52/255 (20%)

Query: 65  RNLPL-LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
             +P     + +  N++S +PA +      L  L +  N + +I            F   
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA--------FT-- 77

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIA 181
              L  L       L+LSD    N  + S+         ++  L ++   L  L      
Sbjct: 78  --GLALL-----EQLDLSD----NAQLRSVDPATFHGLGRLHTLHLDRCGLQELG----- 121

Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNN 240
                             P     L+ L  L L  N + ++P        +L   ++  N
Sbjct: 122 ------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 241 ALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GK 296
            +S++P      L  L  L LH N++      A     RL  L L  N+LS LP E    
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 297 MTTLRKLLLTGNPLR 311
           +  L+ L L  NP  
Sbjct: 224 LRALQYLRLNDNPWV 238

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  130 bits (329), Expect = 6e-34
 Identities = 56/277 (20%), Positives = 101/277 (36%), Gaps = 26/277 (9%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   CQ  L V+  S+  L  +P ++        L L  N +  ++           LK 
Sbjct: 25  CPFRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKN-----LKN 77

Query: 329 LRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL 387
           L +  L  N+ S+ S           +L    + L L    L  +P ++ +   + +L +
Sbjct: 78  LHTLILINNKISKIS---PGAFAPLVKL----ERLYLSKNQLKELPEKMPKT--LQELRV 128

Query: 388 SRNSIQELPPE-LSSCASLQTLILSRNKIKDW--PDAILTSLSSLSCLKLDNNPLRQVPS 444
             N I ++     +    +  + L  N +K     +     +  LS +++ +  +  +P 
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRI 502
                   L  L L  N I  +        L +L +L L    +       L     LR 
Sbjct: 189 GLPPS---LTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           L L+ N L  +P G  +   +  + L +NNISA+   
Sbjct: 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  129 bits (326), Expect = 1e-33
 Identities = 66/337 (19%), Positives = 123/337 (36%), Gaps = 60/337 (17%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           +      +  +P  +      A   + NN ++ +       L  L TL L +N++ +   
Sbjct: 36  VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93

Query: 271 EACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
            A    ++L  L LS N L  LP ++    TL++L +  N +  +R S+ NG     L  
Sbjct: 94  GAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNG-----LNQ 146

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL--SAIPSEIWEA-GEITKL 385
           +                                + L    L  S I +  ++   +++ +
Sbjct: 147 MI------------------------------VVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            ++  +I  +P  L    SL  L L  NKI     A L  L++L+ L L  N +  V + 
Sbjct: 177 RIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE-------APTDILRL 497
              + P L+ L L+ N +  +P     +   ++Q +YL    +          P    + 
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292

Query: 498 QQLRILDLSQNSLQ--SIPEG-FKNLTSLTELDLSDN 531
                + L  N +Q   I    F+ +     + L + 
Sbjct: 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  129 bits (326), Expect = 1e-33
 Identities = 61/323 (18%), Positives = 120/323 (37%), Gaps = 63/323 (19%)

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNN 285
           C L      +  L  +P +L        LDL +N++ E  ++         L  L L NN
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINN 86

Query: 286 SLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
            +S + P     +  L +L L+ N L+ L           + K L+              
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLKELP--------EKMPKTLQ-------------- 124

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE---LS 400
                           EL +    ++ +   ++    ++  ++L  N ++    E     
Sbjct: 125 ----------------ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
               L  + ++   I   P  +  SL+ L    LD N + +V +   K +  L  L LS+
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 461 N-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG--- 516
           N I+++      ++ PHL+EL+L   +L + P  +   + ++++ L  N++ +I      
Sbjct: 226 NSISAVDNGS-LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 517 ----FKNLTSLTELDLSDNNISA 535
                    S + + L  N +  
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (289), Expect = 1e-28
 Identities = 60/315 (19%), Positives = 118/315 (37%), Gaps = 39/315 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L  VP ++                 D   L L +N I ++K+   +NL  L 
Sbjct: 35  VVQCSDLGLEKVPKDL---------------PPDTALLDLQNNKITEIKDGDFKNLKNLH 79

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N + ++P+       L +     N++ ++ 
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVR 137

Query: 131 S-SLGRCLNLSDFKASNNCITSL---PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
                    +   +   N + S            K+S + +    +T +   L  S   L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---L 194

Query: 187 TELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSA 244
           TEL    N +  +   ++  L+ L +L L  N I ++ + S++    L E ++ NN L  
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254

Query: 245 LPAELGKLSKLGTLDLHSNQLKE--------YCVEACQLRLSVLDLSNNSL--SGLPPEI 294
           +P  L     +  + LH+N +                +   S + L +N +    + P  
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 295 -GKMTTLRKLLLTGN 308
              +     + L   
Sbjct: 315 FRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 3e-25
 Identities = 65/382 (17%), Positives = 123/382 (32%), Gaps = 99/382 (25%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           L V+  S   L ++P  +        LD+  N I +I                       
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIK---------------------- 68

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                   NL      NN I+ +     A   K+ +L +  N+L  L   +  +   L E
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQE 125

Query: 189 LIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI---PSSISGCCSLAEFYMGNNALSA 244
           L   +N +  + +++   L+++I ++L  N + S      +  G   L+   + +  ++ 
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +P  L     L  L L  N++ +              +   SL GL         L KL 
Sbjct: 186 IPQGL--PPSLTELHLDGNKITK--------------VDAASLKGLN-------NLAKLG 222

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L+ N +  + +  +         +LR                              EL L
Sbjct: 223 LSFNSISAVDNGSLAN-----TPHLR------------------------------ELHL 247

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQTLILSRNKIKD 417
               L  +P  + +   I  + L  N+I  +           +  AS   + L  N ++ 
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 418 W--PDAILTSLSSLSCLKLDNN 437
           W    +    +   + ++L N 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSL 510
           L+++  S   +  +P++ P    P    L L+  ++ E        L+ L  L L  N +
Sbjct: 33  LRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 511 QSIPEG-FKNLTSLTELDLSDNNISALPPEL 540
             I  G F  L  L  L LS N +  LP ++
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKM 119

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  132 bits (333), Expect = 9e-34
 Identities = 61/275 (22%), Positives = 103/275 (37%), Gaps = 44/275 (16%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  + S +     +L  +P  I   T  R L L  N ++ ++ +         L++L   
Sbjct: 41  CSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKH-----LRHLE-- 91

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNS 391
                                        L L   ++  I          +  L+L  N 
Sbjct: 92  ----------------------------ILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKD 449
           +  +P       + L+ L L  N I+  P      + SL  L L +   L  +    F+ 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQN 508
           +  L+ L+L+    +L E P  + L  L EL L    L        + L  L+ L + Q+
Sbjct: 184 LSNLRYLNLAMC--NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 509 SLQSIPEG-FKNLTSLTELDLSDNNISALPPELVS 542
            +Q I    F NL SL E++L+ NN++ LP +L +
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  115 bits (290), Expect = 5e-28
 Identities = 55/284 (19%), Positives = 111/284 (39%), Gaps = 46/284 (16%)

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
           ++  ++   +  +  +P  IS   +     +  N +  +       L  L  L L  N +
Sbjct: 43  NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 266 KEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           +   + A      L+ L+L +N L+ +P      ++ L++L L  NP+ ++ S   N   
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-- 158

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEA-G 380
              +  LR                               L L  +  LS I    +E   
Sbjct: 159 ---IPSLR------------------------------RLDLGELKRLSYISEGAFEGLS 185

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L+L+  +++E+P  L+    L  L LS N +          L  L  L +  + ++
Sbjct: 186 NLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  + F ++  L  ++L++N +  LP +  F+ L HL+ ++L 
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (266), Expect = 7e-25
 Identities = 56/306 (18%), Positives = 112/306 (36%), Gaps = 67/306 (21%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +    ++LR+VP+ +               + + + L L  N I+ +K    ++L  L 
Sbjct: 47  KVICVRKNLREVPDGI---------------STNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           +L +S N +  +   A   L  L +L++  N +  IP+      + L +    +N ++ +
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV-EGNKLTVLSNNLIASWTMLTE 188
           PS                              + +LD+ E  +L+ +S       + L  
Sbjct: 152 PSYA----------------------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           L  +   L  +P  +  L +L  LDL  N + +I                          
Sbjct: 190 LNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS---------------------- 226

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLL 305
              L  L  L +  +Q++     A      L  ++L++N+L+ LP ++   +  L ++ L
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 306 TGNPLR 311
             NP  
Sbjct: 287 HHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.1 bits (242), Expect = 8e-22
 Identities = 61/302 (20%), Positives = 106/302 (35%), Gaps = 66/302 (21%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TI 203
               +  +P+ ++  +    L++  N++ ++  N       L  L  S+N +  +     
Sbjct: 51  VRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108

Query: 204 GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDL- 260
             L+ L  L+L  NR+ +IP+        L E ++ NN + ++P+    ++  L  LDL 
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168

Query: 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
              +L                +S  +  GL         LR L L    LR +       
Sbjct: 169 ELKRLSY--------------ISEGAFEGLS-------NLRYLNLAMCNLREI------- 200

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEA 379
           P    L  L                               EL L G +LSAI        
Sbjct: 201 PNLTPLIKLD------------------------------ELDLSGNHLSAIRPGSFQGL 230

Query: 380 GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             + KL + ++ IQ +      +  SL  + L+ N +   P  + T L  L  + L +NP
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290

Query: 439 LR 440
             
Sbjct: 291 WN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 4e-21
 Identities = 52/203 (25%), Positives = 77/203 (37%), Gaps = 14/203 (6%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
            C    L+E+P  +    R LNL       N I  +          +  L +  N +  +
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNL-----HENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 176 SNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
                     L  L    N L  +P      LS+L  L L  N I SIPS   +   SL 
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 234 EFYMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291
              +G    LS +       LS L  L+L    L+E       ++L  LDLS N LS + 
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223

Query: 292 PEI-GKMTTLRKLLLTGNPLRTL 313
           P     +  L+KL +  + ++ +
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVI 246

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  128 bits (323), Expect = 4e-33
 Identities = 66/291 (22%), Positives = 112/291 (38%), Gaps = 30/291 (10%)

Query: 255 LGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314
           L +L    + +   C   C   L V+  S+  L  +P EI        L L  N +  LR
Sbjct: 16  LDSLPPTYSAM---CPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELR 70

Query: 315 SSLVNGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
                G     L++L +  L  N+    S   E   +   +L    ++L +   +L  IP
Sbjct: 71  KDDFKG-----LQHLYALVLVNNK---ISKIHEKAFSPLRKL----QKLYISKNHLVEIP 118

Query: 374 SEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW--PDAILTSLSSLS 430
             +  +  + +L +  N I+++P    S   ++  + +  N +++          L  L+
Sbjct: 119 PNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LN 175

Query: 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
            L++    L  +P D  +    L  L L +N I ++           L  L L   Q+R 
Sbjct: 176 YLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELED-LLRYSKLYRLGLGHNQIRM 231

Query: 490 APTDILR-LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
                L  L  LR L L  N L  +P G  +L  L  + L  NNI+ +   
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  125 bits (317), Expect = 2e-32
 Identities = 61/336 (18%), Positives = 121/336 (36%), Gaps = 59/336 (17%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           +      + ++P  IS         + NN +S L  +    L  L  L L +N++ +   
Sbjct: 38  VQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95

Query: 271 EACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           +A     +L  L +S N L  +PP +   ++L +L +  N +R +   + +G     L+ 
Sbjct: 96  KAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSG-----LRN 148

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL--SAIPSEIWEAGEITKLD 386
           +                                + + G  L  S      ++  ++  L 
Sbjct: 149 MN------------------------------CIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG 446
           +S   +  +P +L    +L  L L  NKI+      L   S L  L L +N +R + +  
Sbjct: 179 ISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 447 FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI-------LRLQ 498
              +P L+ L L  N ++ +P       L  LQ +YL    + +   +        ++  
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAG--LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 499 QLRILDLSQNSLQ--SIPEG-FKNLTSLTELDLSDN 531
               + L  N +    +    F+ +T    +   + 
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  124 bits (314), Expect = 6e-32
 Identities = 62/325 (19%), Positives = 113/325 (34%), Gaps = 63/325 (19%)

Query: 227 SGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLD 281
            GC C L      +  L A+P E+        LDL +N + E  +          L  L 
Sbjct: 29  FGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISE--LRKDDFKGLQHLYALV 84

Query: 282 LSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340
           L NN +S +  +    +  L+KL ++ N L  +         P L   L           
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP--------PNLPSSLV---------- 126

Query: 341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE--LPP 397
                               EL +    +  +P  ++     +  +++  N ++     P
Sbjct: 127 --------------------ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457
                  L  L +S  K+   P  +  +L+ L    LD+N ++ +  +       L  L 
Sbjct: 167 GAFDGLKLNYLRISEAKLTGIPKDLPETLNELH---LDHNKIQAIELEDLLRYSKLYRLG 223

Query: 458 LSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516
           L +N I  +      S LP L+EL+L   +L   P  +  L+ L+++ L  N++  +   
Sbjct: 224 LGHNQIRMIENGS-LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN 282

Query: 517 -------FKNLTSLTELDLSDNNIS 534
                           + L +N + 
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  122 bits (307), Expect = 6e-31
 Identities = 57/331 (17%), Positives = 119/331 (35%), Gaps = 55/331 (16%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TI 203
           S+  + ++P++++     + LD++ N ++ L  +       L  L+   N ++ + E   
Sbjct: 41  SDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHS 262
             L +L +L + +N ++ IP ++    SL E  + +N +  +P      L  +  +++  
Sbjct: 99  SPLRKLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156

Query: 263 NQLKEYCVEA---CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319
           N L+    E      L+L+ L +S   L+G+P ++    TL +L L  N ++ +    + 
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLL 214

Query: 320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA 379
                    L                                L L    +  I +     
Sbjct: 215 R-----YSKLY------------------------------RLGLGHNQIRMIENGSLSF 239

Query: 380 -GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD------AILTSLSSLSCL 432
              + +L L  N +  +P  L     LQ + L  N I                 +  + +
Sbjct: 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299

Query: 433 KLDNNPL--RQVPSDGFKDIPMLQILDLSYN 461
            L NNP+   +V    F+ +     +     
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  115 bits (289), Expect = 2e-28
 Identities = 69/291 (23%), Positives = 127/291 (43%), Gaps = 35/291 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L+ VP E+               + D   L L +N+I +L++D  + L  L 
Sbjct: 37  VVQCSDLGLKAVPKEI---------------SPDTTLLDLQNNDISELRKDDFKGLQHLY 81

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N +++IP      ++LV+     N+++++P
Sbjct: 82  ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVP 139

Query: 131 -SSLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                   N++  +   N + +        D  K++ L +   KLT +  +L  +   L 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LN 196

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
           EL    N +  +    +   S+L RL L  N+I  I +   S   +L E ++ NN LS +
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256

Query: 246 PAELGKLSKLGTLDLHSNQLKE--------YCVEACQLRLSVLDLSNNSLS 288
           PA L  L  L  + LH+N + +              +   + + L NN + 
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 6e-23
 Identities = 59/303 (19%), Positives = 105/303 (34%), Gaps = 60/303 (19%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L+L N  + ++  + +K                L  L+L +N I K+ E     L  L 
Sbjct: 58  LLDLQNNDISELRKDDFKGLQ------------HLYALVLVNNKISKIHEKAFSPLRKLQ 105

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
            L +S N L E+P  +     L  L +  N I K+P  +      +   +   N L+   
Sbjct: 106 KLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 131 SSLG--RCLNLSDFKASNNCITSLPEDL----------------------ADCSKMSKLD 166
              G    L L+  + S   +T +P+DL                         SK+ +L 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  N++ ++ N  ++    L EL    N L+ +P  +  L  L  + LH N I  +    
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG--- 280

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLDL 282
                        N    +   + K +    + L +N +  + V+     C      +  
Sbjct: 281 ------------VNDFCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 283 SNN 285
            N 
Sbjct: 328 GNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 70/382 (18%), Positives = 120/382 (31%), Gaps = 100/382 (26%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           L V+  S   L  +P  I        LD+  N I ++                       
Sbjct: 35  LRVVQCSDLGLKAVPKEISPD--TTLLDLQNNDISELR---------------------- 70

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                   +L      NN I+ + E   +   K+ KL +  N L  +  NL         
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--------- 121

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPA 247
                             S L+ L +H NRI  +P  + SG  ++    MG N L     
Sbjct: 122 -----------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 248 ELGKLS--KLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLL 304
           E G     KL  L +   +L     +  +  L+ L L +N +  +  E   + + L +L 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPE-TLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N +R + +  ++      L  LR                              EL L
Sbjct: 224 LGHNQIRMIENGSLSF-----LPTLR------------------------------ELHL 248

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQTLILSRNKIKD 417
           +   LS +P+ + +   +  + L  N+I ++              A    + L  N +  
Sbjct: 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 418 W--PDAILTSLSSLSCLKLDNN 437
           W    A    ++    ++  N 
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSL 510
           L+++  S   + ++P+       P    L L+   + E   D    LQ L  L L  N +
Sbjct: 35  LRVVQCSDLGLKAVPKEIS----PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 511 QSIPEG-FKNLTSLTELDLSDNNISALPPEL 540
             I E  F  L  L +L +S N++  +PP L
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNL 121

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  125 bits (317), Expect = 2e-32
 Identities = 52/263 (19%), Positives = 110/263 (41%), Gaps = 21/263 (7%)

Query: 63  DLRNLPLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVS-FNSIM-KIPDEIGSATALV 117
                  +  L++S   L     +P+++  L  L  L +   N+++  IP  I   T L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 118 KFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLT-V 174
               +   +   +P  L +   L     S N ++ +LP  ++    +  +  +GN+++  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 175 LSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSL 232
           + ++  +   + T +  S+N L G +P T  +L+ L  +DL +N +            + 
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 233 AEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNS 286
            + ++  N+L+  L  ++G    L  LDL +N++     +   +   +  L  L++S N+
Sbjct: 224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKF-LHSLNVSFNN 279

Query: 287 LSGLPPEIGKMTTLRKLLLTGNP 309
           L G  P+ G +          N 
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  104 bits (262), Expect = 5e-25
 Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 42/269 (15%)

Query: 59  KLKEDLRNLPLL----TVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI---MKIPDEI 110
           ++K+DL N   L       +  +      L     + + + +LD+S  ++     IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 111 GSATALVKFDCSS-NQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDV 167
            +   L        N L   +P ++ +   L     ++  ++ ++P+ L+    +  LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 168 EGNKLT--VLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIR-LDLHQNRIL-SI 222
             N L+  +  +  I+S   L  +    N ++G +P++ GS S+L   + + +NR+   I
Sbjct: 133 SYNALSGTLPPS--ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 223 PSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD 281
           P +     +LA   +  N L        G                             + 
Sbjct: 191 PPTF-ANLNLAFVDLSRNMLEGDASVLFGSDKNT----------------------QKIH 227

Query: 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L+ NSL+    ++G    L  L L  N +
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 98.8 bits (247), Expect = 5e-23
 Identities = 62/269 (23%), Positives = 105/269 (39%), Gaps = 48/269 (17%)

Query: 276 RLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           R++ LDLS  +L     +P  +  +  L  L + G            GP P  +  L   
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-------GPIPPAIAKL--- 100

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNS 391
                               T+L      L +   N+S AIP  + +   +  LD S N+
Sbjct: 101 --------------------TQLHY----LYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 392 IQ-ELPPELSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPLR-QVPSDGFK 448
           +   LPP +SS  +L  +    N+I    PD+  +     + + +  N L  ++P     
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 449 DIPMLQILDLSYNIAS--LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLS 506
               L  +DLS N+          F S  + Q+++L +  L      +   + L  LDL 
Sbjct: 197 L--NLAFVDLSRNMLEGDASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252

Query: 507 QNSLQ-SIPEGFKNLTSLTELDLSDNNIS 534
            N +  ++P+G   L  L  L++S NN+ 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 17/194 (8%)

Query: 361 ELSLEGMNLS---AIPSEIWEAGEITKLDLS-RNSIQ-ELPPELSSCASLQTLILSRNKI 415
            L L G+NL     IPS +     +  L +   N++   +PP ++    L  L ++   +
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 416 K-DWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN--IASLPENPPF 471
               PD + + + +L  L    N L   +P      +P L  +    N    ++P++  +
Sbjct: 114 SGAIPDFL-SQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDS--Y 169

Query: 472 SSLPHL-QELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDL 528
            S   L   + + R +L  + P     L  L  +DLS+N L+      F +  +  ++ L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 529 SDNNISALPPELVS 542
           + N+++    ++  
Sbjct: 229 AKNSLAFDLGKVGL 242

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  124 bits (314), Expect = 3e-32
 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 10/183 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW 418
            E++ +  NL+A+P ++    + T L LS N +       L     L  L L R ++   
Sbjct: 13  LEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
              +  +L  L  L L +N L+ +P    + +P L +LD+S+N + SLP       L  L
Sbjct: 71  Q--VDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGA-LRGLGEL 126

Query: 478 QELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 535
           QELYL+  +L+  P  +L    +L  L L+ N+L  +P G    L +L  L L +N++  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 536 LPP 538
           +P 
Sbjct: 187 IPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  115 bits (290), Expect = 4e-29
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
            +++  + ++  LPP+L        L LS N +  +  A L   + L+ L LD   L ++
Sbjct: 13  LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQL 500
                  +P+L  LDLS+N + SLP      +LP L  L +   +L   P   L  L +L
Sbjct: 71  QV--DGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 501 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 540
           + L L  N L+++P G       L +L L++NN++ LP  L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  101 bits (254), Expect = 4e-24
 Identities = 56/264 (21%), Positives = 89/264 (33%), Gaps = 63/264 (23%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C  +       ++    +L+ LPP++        L L+ N L T   + +          
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMP-----YTR 56

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L                               +L+L+   L+ +  +      +  LDLS
Sbjct: 57  LT------------------------------QLNLDRAELTKLQVD-GTLPVLGTLDLS 85

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            N +Q LP    +  +L  L +S N++   P   L  L  L  L L  N L+ +P     
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 449 DIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ 507
             P L+ L L+ N +  LP     + L +L  L                        L +
Sbjct: 146 PTPKLEKLSLANNNLTELPAG-LLNGLENLDTLL-----------------------LQE 181

Query: 508 NSLQSIPEGFKNLTSLTELDLSDN 531
           NSL +IP+GF     L    L  N
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 93.2 bits (232), Expect = 2e-21
 Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 9/195 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
           +C    L  LP  L +  + +    S N + +     L   +++++L+++  +LT L   
Sbjct: 16  NCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-- 71

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYM 237
           +  +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P     G   L E Y+
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 238 GNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI 294
             N L  LP  L     KL  L L +N L E           L  L L  NSL  +P   
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

Query: 295 GKMTTLRKLLLTGNP 309
                L    L GNP
Sbjct: 192 FGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 86.3 bits (214), Expect = 7e-19
 Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 41/230 (17%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           ++  +  + ++P  +         ++  N L       L   ++L  L+L   +L +  V
Sbjct: 15  VNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           +     L  LDLS+N L  LP     +  L  L ++ N L +L    + G    L     
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-EL----- 126

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSR 389
                                        +EL L+G  L  +P  +     ++ KL L+ 
Sbjct: 127 -----------------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

Query: 390 NSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
           N++ ELP  L +   +L TL+L  N +   P     S   L    L  NP
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 85.2 bits (211), Expect = 1e-18
 Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 9/117 (7%)

Query: 423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELY 481
           + S   ++C   D   L  +P D  KD     IL LS N + +            L +L 
Sbjct: 9   VASHLEVNC---DKRNLTALPPDLPKD---TTILHLSENLLYTFSLAT-LMPYTRLTQLN 61

Query: 482 LRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
           L R +L +   D   L  L  LDLS N LQS+P   + L +LT LD+S N +++LP 
Sbjct: 62  LDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +N   R+L  +P ++                 D   L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDL---------------PKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +L++L    G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L  L +     N + +LP  L     K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 83.2 bits (206), Expect = 8e-18
 Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 6/202 (2%)

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSS 123
             +     +N     L+ LP  +        L +S N +           T L + +   
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
            +L +L    G    L     S+N + SLP        ++ LDV  N+LT L    +   
Sbjct: 65  AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 184 TMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNA 241
             L EL    N L  +P  +     +L +L L  N +  +P+ + +G  +L    +  N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 242 LSALPAELGKLSKLGTLDLHSN 263
           L  +P        L    LH N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.2 bits (198), Expect = 8e-17
 Identities = 58/241 (24%), Positives = 87/241 (36%), Gaps = 44/241 (18%)

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK--EYCVEACQLRLSVLDL 282
            +S   S  E       L+ALP +L        L L  N L            RL+ L+L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
               L+ L  + G +  L  L L+ N L++L         P L + L             
Sbjct: 63  DRAELTKLQVD-GTLPVLGTLDLSHNQLQSL---------PLLGQTL------------- 99

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-S 400
                       L      L +    L+++P       GE+ +L L  N ++ LPP L +
Sbjct: 100 ----------PAL----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
               L+ L L+ N + + P  +L  L +L  L L  N L  +P   F    +L    L  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHG 204

Query: 461 N 461
           N
Sbjct: 205 N 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  125 bits (316), Expect = 6e-31
 Identities = 68/344 (19%), Positives = 110/344 (31%), Gaps = 37/344 (10%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEA-------------VDLQKLILAHN 55
             S S N    ++     + +  +D+  +     E                  +L L   
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69

Query: 56  NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA 115
           N+  L ++L   P +TVL ++ N L  LP        L+ LD   N +  +P+   S   
Sbjct: 70  NLSSLPDNL--PPQITVLEITQNALISLPELPAS---LEYLDACDNRLSTLPELPAS--- 121

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           L   D  +NQL  LP        L    A NN +T LPE     + +  L V  N+LT L
Sbjct: 122 LKHLDVDNNQLTMLPELPA---LLEYINADNNQLTMLPELP---TSLEVLSVRNNQLTFL 175

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRL----IRLDLHQNRILSIPSSISGCCS 231
                     L  L  S NLL  +P             I     +NRI  IP +I     
Sbjct: 176 PELP----ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDP 231

Query: 232 LAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
                + +N LS+     L + +                 +   L   + D         
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPEN 291

Query: 291 -PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              ++ ++    +     N        L +  +       R ++
Sbjct: 292 KQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQV 335

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  116 bits (292), Expect = 8e-28
 Identities = 51/265 (19%), Positives = 89/265 (33%), Gaps = 40/265 (15%)

Query: 280 LDLSNNSLSGLPPEIGKMTT-LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS-RLPENE 337
            +   N++SG   +         K  L G      R+  V+     L+      +L    
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGE----NRNEAVSLLKECLINQFSELQLNRL- 69

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP 397
                    +L ++   L      L +    L ++P        +  LD   N +  LP 
Sbjct: 70  ---------NLSSLPDNLPPQITVLEITQNALISLPELP---ASLEYLDACDNRLSTLPE 117

Query: 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457
             +S   L+ L +  N++   P+      + L  +  DNN L  +P         L++L 
Sbjct: 118 LPAS---LKHLDVDNNQLTMLPELP----ALLEYINADNNQLTMLPEL----PTSLEVLS 166

Query: 458 LSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLR----ILDLSQNSLQS 512
           +  N +  LPE         L+ L +    L   P   +R              +N +  
Sbjct: 167 VRNNQLTFLPE-----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH 221

Query: 513 IPEGFKNLTSLTELDLSDNNISALP 537
           IPE   +L     + L DN +S+  
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRI 246

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  113 bits (285), Expect = 6e-27
 Identities = 54/365 (14%), Positives = 100/365 (27%), Gaps = 41/365 (11%)

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETI--GSLSRLIRLDLHQNRILSIPSSIS 227
           N ++    +  ++W    +        N     +    +++   L L++  + S+P ++ 
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL- 78

Query: 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSL 287
               +    +  NAL +LP     L  L   D   N+L         L+   LD+ NN L
Sbjct: 79  -PPQITVLEITQNALISLPELPASLEYL---DACDNRLSTLPELPASLK--HLDVDNNQL 132

Query: 288 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
           + LP        L  +    N L  L     +      L+ L   +  N+ +      E 
Sbjct: 133 TMLPELPAL---LEYINADNNQLTMLPELPTS------LEVLS--VRNNQLTFLPELPES 181

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWE----AGEITKLDLSRNSIQELPPELSSCA 403
           L           + L +    L ++P+                   N I  +P  + S  
Sbjct: 182 L-----------EALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLD 230

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
              T+IL  N +       L+  ++                        L         A
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT----A 286

Query: 464 SLPENPPFSSLPHLQEL--YLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLT 521
             PEN                           +      R     +  + +  E      
Sbjct: 287 WFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASA 346

Query: 522 SLTEL 526
            L + 
Sbjct: 347 ELRQQ 351

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  109 bits (273), Expect = 2e-25
 Identities = 61/348 (17%), Positives = 103/348 (29%), Gaps = 65/348 (18%)

Query: 203 IGSLSRLIRLDLHQNRILSIPSSISGCCS----LAEFYMGNNALSALPAELGKLSKLGTL 258
           I +   L +   + N I    +            A      N   +L  E   +++   L
Sbjct: 7   INNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSEL 64

Query: 259 DLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
            L+   L          +++VL+++ N+L  LP        L  L    N L TL     
Sbjct: 65  QLNRLNLSSLPDNLPP-QITVLEITQNALISLPELPAS---LEYLDACDNRLSTL----- 115

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
               P L   L                              K L ++   L+ +P     
Sbjct: 116 ----PELPASL------------------------------KHLDVDNNQLTMLPELP-- 139

Query: 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
              +  ++   N +  LP   +S   L+ L +  N++   P+       SL  L +  N 
Sbjct: 140 -ALLEYINADNNQLTMLPELPTS---LEVLSVRNNQLTFLPE----LPESLEALDVSTNL 191

Query: 439 LRQVPSDGFKDI---PMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494
           L  +P+   ++              N I  +PEN    SL     + L    L     + 
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPEN--ILSLDPTCTIILEDNPLSSRIRES 249

Query: 495 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 542
           L  Q  +          S+ +G +N       D             VS
Sbjct: 250 LSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 8e-16
 Identities = 42/269 (15%), Positives = 84/269 (31%), Gaps = 13/269 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ +   +N +  L E   +L    VL+V +N+L+ LP     L   ++LDVS N +  +
Sbjct: 142 LEYINADNNQLTMLPELPTSL---EVLSVRNNQLTFLPELPESL---EALDVSTNLLESL 195

Query: 107 PDEIGSATAL----VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
           P             + F C  N++  +P ++            +N ++S   +       
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
                       +S+    +         +          +  +      + H N   + 
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAF 315

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKL-GTLDLHSNQLKEYCVEACQLRLSVLD 281
              +S   S          ++A   +L   ++L       +    E C +   L  +  +
Sbjct: 316 LDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWN--N 373

Query: 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L    L     E         LL  G  +
Sbjct: 374 LRKTLLVHQASEGLFDNDTGALLSLGREM 402

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  119 bits (300), Expect = 2e-30
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 8/196 (4%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLIL 410
             L  ++K L L    L  + S  + +  E+  LDLSR  IQ +      S + L TLIL
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP 469
           + N I+       + LSSL  L      L  + +     +  L+ L++++N I S     
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 470 PFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRI----LDLSQNSLQSIPEGFKNLTSLT 524
            FS+L +L+ L L   +++      L  L Q+ +    LDLS N +  I  G      L 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK 203

Query: 525 ELDLSDNNISALPPEL 540
           EL L  N + ++P  +
Sbjct: 204 ELALDTNQLKSVPDGI 219

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  111 bits (281), Expect = 6e-28
 Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 10/181 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           + L L    +  I    +++   ++ L L+ N IQ L     S  +SLQ L+     +  
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLP 475
             +  +  L +L  L + +N ++       F ++  L+ LDLS N I S+        L 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLH 173

Query: 476 HLQ----ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSD 530
            +      L L    +        +  +L+ L L  N L+S+P+G F  LTSL ++ L  
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

Query: 531 N 531
           N
Sbjct: 234 N 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 90.8 bits (226), Expect = 1e-20
 Identities = 49/240 (20%), Positives = 76/240 (31%), Gaps = 44/240 (18%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE- 267
            LDL  N +  + S        L    +    +  +       LS L TL L  N ++  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 268 -YCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
                +    L  L     +L+ L     G + TL++L +  N +++          P  
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-------KLPEY 144

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-----G 380
              L                       T L    + L L    + +I             
Sbjct: 145 FSNL-----------------------TNL----EHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
               LDLS N +  + P       L+ L L  N++K  PD I   L+SL  + L  NP  
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 26/226 (11%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
              + L L+ N +  L      + P L VL++S  ++  +   A   L  L +L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 103 IMKIPDEIGSA-TALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPED--LAD 158
           I  +     S  ++L K       L  L +   G    L +   ++N I S       ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
            + +  LD+  NK+  +    +     +  L                    + LDL  N 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-------------------NLSLDLSLNP 188

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
           +  I         L E  +  N L ++P     +L+ L  + LH+N
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.9 bits (216), Expect = 3e-19
 Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C      ++P +L    + L+LS      N +  L         ++  LD+   ++  +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +       +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEAC------QLRLSVLDLSNN 285
           E  + +N + +         L+ L  LDL SN+++              L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
            ++ + P   K   L++L L  N L+++
Sbjct: 188 PMNFIQPGAFKEIRLKELALDTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.0 bits (198), Expect = 8e-17
 Identities = 53/260 (20%), Positives = 85/260 (32%), Gaps = 53/260 (20%)

Query: 215 HQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEAC 273
            +     IP ++    S     +  N L  L +       +L  LDL   +++     A 
Sbjct: 15  MELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 274 Q--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           Q    LS L L+ N +  L       +++L+KL+     L +L +  +            
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-------- 124

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA----GEITKLD 386
                                      T KEL++    + +      E       +  LD
Sbjct: 125 ---------------------------TLKELNVAHNLIQSFKLP--EYFSNLTNLEHLD 155

Query: 387 LSRNSIQELPPE-LSSCASLQ----TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           LS N IQ +    L     +     +L LS N +          +  L  L LD N L+ 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS 214

Query: 442 VPSDGFKDIPMLQILDLSYN 461
           VP   F  +  LQ + L  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  118 bits (298), Expect = 2e-30
 Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 7/187 (3%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNK 414
           +     +      L+AIPS I    +  KLDL  N +  LP +       L+ L L+ NK
Sbjct: 15  NNNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           ++  P  I   L +L  L + +N L+ +P   F  +  L  L L  N + SLP    F S
Sbjct: 73  LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-FDS 131

Query: 474 LPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
           L  L  L L   +L+  P  +  +L  L+ L L  N L+ +PEG F  LT L  L L +N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

Query: 532 NISALPP 538
            +  +P 
Sbjct: 192 QLKRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  113 bits (285), Expect = 2e-28
 Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 6/184 (3%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLIL 410
           + +   +K+L L+   LS++PS+ +    ++  L L+ N +Q LP  +     +L+TL +
Sbjct: 33  SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP 469
           + NK++  P  +   L +L+ L+LD N L+ +P   F  +  L  L L YN + SLP+  
Sbjct: 93  TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG- 151

Query: 470 PFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELD 527
            F  L  L+EL L   QL+  P     +L +L+ L L  N L+ +PEG F +L  L  L 
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 528 LSDN 531
           L +N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 94.3 bits (235), Expect = 8e-22
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 8/153 (5%)

Query: 390 NSIQELPPELSSCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            ++ +    + SC  +  ++  S  K+   P  I      L    L +N L  +PS  F 
Sbjct: 2   EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLD---LQSNKLSSLPSKAFH 58

Query: 449 DIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLS 506
            +  L++L L+ N + +LP    F  L +L+ L++   +L+  P  +  +L  L  L L 
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGI-FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117

Query: 507 QNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
           +N L+S+P   F +LT LT L L  N + +LP 
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 21/214 (9%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
              S++ S++ L  +P+ +                 D +KL L  N +  L       L 
Sbjct: 17  NKNSVDCSSKKLTAIPSNI---------------PADTKKLDLQSNKLSSLPSKAFHRLT 61

Query: 69  LLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSA-TALVKFDCSSNQL 126
            L +L ++ NKL  LPA I  EL  L++L V+ N +  +P  +      L +     NQL
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 127 KELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWT 184
           K LP  +   L  L+      N + SLP+ + D  + + +L +  N+L  +        T
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 185 MLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
            L  L    N L  +PE    SL +L  L L +N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 62/200 (31%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
             S+D S   +  IP  I + T   K D  SN+L  LPS     L  L     ++N + +
Sbjct: 18  KNSVDCSSKKLTAIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75

Query: 152 LPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRL 209
           LP  +      +  L V  NKL  L   +      L EL   +N L  +P  +  SL++L
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135

Query: 210 IRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
             L L  N + S+P  +     SL E  + NN L  +P     KL++L TL L +NQLK 
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

Query: 268 YCVEACQ--LRLSVLDLSNN 285
               A     +L +L L  N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 43/232 (18%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE 271
           D    ++ +IPS+I       +  + +N LS+LP++   +L+KL  L L+ N+L+     
Sbjct: 22  DCSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 272 AC-QL-RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
              +L  L  L +++N L  LP  +  ++  L +L L  N L++L   + +  T  L   
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KL--- 135

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDL 387
                                            LSL    L ++P  +++    + +L L
Sbjct: 136 -------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRL 164

Query: 388 SRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             N ++ +P         L+TL L  N++K  P+    SL  L  L+L  NP
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  112 bits (282), Expect = 2e-27
 Identities = 60/352 (17%), Positives = 126/352 (35%), Gaps = 58/352 (16%)

Query: 199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTL 258
           MP T+  +  L  +        S  +S+S C         + +L+++P+ L     + +L
Sbjct: 1   MPHTLWMVWVLGVIISLSKEESSNQASLS-CDRNGICKGSSGSLNSIPSGL--TEAVKSL 57

Query: 259 DLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
           DL +N++    +    L+    L  L L++N ++ +  +    + +L  L L+ N L  L
Sbjct: 58  DLSNNRITY--ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
            SS         L  L                                L+L G     + 
Sbjct: 116 SSSWFKP-----LSSLT------------------------------FLNLLGNPYKTLG 140

Query: 374 SEIWEAG--EITKLDLSRN-SIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSL 429
                +   ++  L +    +  ++  +  +    L+ L +  + ++ +    L S+ ++
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN------IASLPENP--PFSSLPHLQELY 481
           S L L       +          ++ L+L          + L              + + 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 482 LRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 532
           +    L +    + ++  L  L+ S+N L+S+P+G F  LTSL ++ L  N 
Sbjct: 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  110 bits (277), Expect = 8e-27
 Identities = 68/331 (20%), Positives = 115/331 (34%), Gaps = 63/331 (19%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
             SS  L  +PS L     +     SNN IT +   DL  C  +  L +  N +  +  +
Sbjct: 37  KGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI--SGCCSLAEF 235
             +S   L  L  S N L+ +  +    LS L  L+L  N   ++  +   S    L   
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 236 YMGNNA-LSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLP 291
            +GN    + +  +    L+ L  L++ ++ L+ Y  ++ +    +S L L       L 
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 292 PEI-GKMTTLRKLLLTGNPLRTLR-SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
                  +++  L L    L T   S L  G T +L+K                      
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF-------------------- 254

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI 409
                                              + ++  S+ ++   L+  + L  L 
Sbjct: 255 -------------------------------TFRNVKITDESLFQVMKLLNQISGLLELE 283

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            SRN++K  PD I   L+SL  + L  NP  
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (260), Expect = 1e-24
 Identities = 62/347 (17%), Positives = 122/347 (35%), Gaps = 50/347 (14%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLP 68
            +G    S+ SL  +P+ +                  ++ L L++N I  +   DL+   
Sbjct: 32  RNGICKGSSGSLNSIPSGL---------------TEAVKSLDLSNNRITYISNSDLQRCV 76

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQL 126
            L  L ++ N ++ +   +   L  L+ LD+S+N +  +        ++L   +   N  
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 127 KELP--SSLGRCLNLSDFK-ASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
           K L   S       L   +  + +  T +     A  + + +L+++ + L       + S
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 183 WTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241
              ++ LI        + E      S +  L+L    + +                  + 
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF---------------SE 241

Query: 242 LSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEI-GKMT 298
           LS      L K      + +    L +      Q+  L  L+ S N L  +P  I  ++T
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT 301

Query: 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           +L+K+ L  NP            +   + YL   L +N   E  + K
Sbjct: 302 SLQKIWLHTNPWDC---------SCPRIDYLSRWLNKNSQKEQGSAK 339

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.9 bits (244), Expect = 2e-22
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
             S  S+  +P  L+   ++++L LS N+I    ++ L    +L  L L +N +  +  D
Sbjct: 37  KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL--RLQQLRI 502
            F  +  L+ LDLSYN +++L  +  F  L  L  L L     +      L   L +L+I
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSS-WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 503 LDLSQN-SLQSIPEG-FKNLTSLTELDLSDNNISALPPE 539
           L +    +   I    F  LT L EL++  +++ +  P+
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.2 bits (224), Expect = 7e-20
 Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 16/194 (8%)

Query: 360 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           + L L    ++ I  + + + G +  LDLS N +  L        +SL  L L  N  K 
Sbjct: 79  QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 418 -WPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
               ++ + L+ L  L++ N     ++    F  +  L+ L++  + + S        S+
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSI 197

Query: 475 PHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIP---------EGFKNLTSLT 524
            ++  L L   Q        +     +  L+L    L +                  +  
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 525 ELDLSDNNISALPP 538
            + ++D ++  +  
Sbjct: 258 NVKITDESLFQVMK 271

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  109 bits (274), Expect = 2e-26
 Identities = 49/191 (25%), Positives = 71/191 (37%), Gaps = 33/191 (17%)

Query: 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIK 416
           S  LS     L  +P  +        LDLS N++  L  E   +   +L +L+LS N + 
Sbjct: 20  SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLP 475
                    + +L  L L +N L  +    F D+  L++L L  N I  +  N  F  + 
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-FEDMA 136

Query: 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG----FKNLTSLTELDLSDN 531
            LQ+LYL                       SQN +   P         L  L  LDLS N
Sbjct: 137 QLQKLYL-----------------------SQNQISRFPVELIKDGNKLPKLMLLDLSSN 173

Query: 532 NISALPPELVS 542
            +  LP   + 
Sbjct: 174 KLKKLPLTDLQ 184

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 99.5 bits (248), Expect = 6e-23
 Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 27/184 (14%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE-LSSCASLQTLILS 411
           L   +  L L   NLS + +E        +  L LS N +  +  E      +L+ L LS
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 470
            N +    + + + L +L  L L NN +  V  + F+D+  LQ L LS N I+  P    
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE-L 155

Query: 471 FSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 529
                                     L +L +LDLS N L+ +P    + L +  +  L 
Sbjct: 156 IKDGNK--------------------LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Query: 530 -DNN 532
             NN
Sbjct: 196 LHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 56/284 (19%), Positives = 94/284 (33%), Gaps = 85/284 (29%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL--KEDLRNLPLL 70
            L+ S + L +VP    ++                  L L+HNN+ +L  +     L  L
Sbjct: 22  ILSCSKQQLPNVP----QSLP-----------SYTALLDLSHNNLSRLRAEWTPTRLTNL 66

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
             L +SHN L+ + + A   +  L+ LD+S N +  + + +                 +L
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL---------------FSDL 111

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                    L      NN I  +  +   D +++ KL +  N+++     LI        
Sbjct: 112 Q-------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN---- 160

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
                            L +L+ LDL  N++  +P                  L  LPA 
Sbjct: 161 ----------------KLPKLMLLDLSSNKLKKLPL---------------TDLQKLPA- 188

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
                    L LH+N L   C   C+L           LS +  
Sbjct: 189 ----WVKNGLYLHNNPL--EC--DCKLYQLFSHWQYRQLSSVMD 224

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 7e-12
 Identities = 53/236 (22%), Positives = 80/236 (33%), Gaps = 63/236 (26%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYC 269
           L   + ++ ++P S+      A   + +N LS L AE    +L+ L +L L  N L    
Sbjct: 23  LSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 270 VEA-CQLR-LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            EA   +  L  LDLS+N L  L   +   +  L  LLL  N +  +  +         +
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-----M 135

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386
             L+                              +L L    +S  P E+ +        
Sbjct: 136 AQLQ------------------------------KLYLSQNQISRFPVELIKD------- 158

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC--LKLDNNPLR 440
                        +    L  L LS NK+K  P   L  L +     L L NNPL 
Sbjct: 159 ------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 31/117 (26%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
           + + LSC       L  VP           +LDLS+N ++ L      + L +L  L L 
Sbjct: 19  ASNILSC---SKQQLPNVPQSLPSYT---ALLDLSHNNLSRLRAEWTPTRLTNLHSLLL- 71

Query: 484 RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 539
                                 S N L  I    F  + +L  LDLS N++  L   
Sbjct: 72  ----------------------SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  108 bits (272), Expect = 4e-26
 Identities = 39/202 (19%), Positives = 78/202 (38%), Gaps = 10/202 (4%)

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSCAS 404
           +  + + L   + EL      L  I    +   G++ K+++S+N + E+      S+   
Sbjct: 21  VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 405 LQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-- 461
           L  + + + N +         +L +L  L + N  ++ +P           +LD+  N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 462 IASLPENPPFSSLPH-LQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 518
           I ++  N  F  L      L+L +  ++E         Q   +     N+L+ +P   F 
Sbjct: 141 IHTIERN-SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 519 NLTSLTELDLSDNNISALPPEL 540
             +    LD+S   I +LP   
Sbjct: 200 GASGPVILDISRTRIHSLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 89.1 bits (221), Expect = 2e-19
 Identities = 48/266 (18%), Positives = 96/266 (36%), Gaps = 23/266 (8%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C     V     + ++ +P ++       +L      LR ++    +G     L+ +   
Sbjct: 7   CHCSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIE-- 60

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEI-WEAGEITKLDLSRN 390
           + +N+       + D+ +   +L     E+ +E  N L  I  E       +  L +S  
Sbjct: 61  ISQNDVL--EVIEADVFSNLPKL----HEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 391 SIQELPPEL-SSCASLQTLILSRN-KIKDWPDAILTSLSS-LSCLKLDNNPLRQVPSDGF 447
            I+ LP            L +  N  I          LS     L L+ N ++++ +  F
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDL 505
               + ++     N +  LP +  F        L + R ++   P+  L  L++LR    
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 506 SQNSLQSIPEGFKNLTSLTELDLSDN 531
              +L+ +P   + L +L E  L+  
Sbjct: 234 --YNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 85.6 bits (212), Expect = 2e-18
 Identities = 50/292 (17%), Positives = 96/292 (32%), Gaps = 55/292 (18%)

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNN 285
           CS   F    + ++ +P++L        L     +L+   ++         L  +++S N
Sbjct: 9   CSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQN 64

Query: 286 -SLSGLPPEI-GKMTTLRKL-LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
             L  +  ++   +  L ++ +   N L  +         P L                 
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN-LPNL----------------- 106

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG-EITKLDLSRN-SIQELPPELS 400
                            + L +    +  +P        +   LD+  N +I  +     
Sbjct: 107 -----------------QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 401 S--CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
                    L L++N I++  ++             DNN L ++P+D F       ILD+
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 459 SYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS 509
           S   I SLP      +L  L+        L++ PT + +L  L    L+  S
Sbjct: 210 SRTRIHSLPSY-GLENLKKLRARSTY--NLKKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 45/269 (16%), Positives = 89/269 (33%), Gaps = 37/269 (13%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
           ++         + ++P+++ +N                 +L      +  +++       
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRN---------------AIELRFVLTKLRVIQKGAFSGFG 54

Query: 69  LLTVLNVSHNK-LSELPA-AIGELHMLKSLDVS-FNSIMKIPDEI-GSATALVKFDCSSN 124
            L  + +S N  L  + A     L  L  + +   N+++ I  E   +   L     S+ 
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 125 QLKELPSSLG------RCLNLSDFKASNNCITSLPEDLAD--CSKMSKLDVEGNKLTVLS 176
            +K LP            L++ D    N  I ++  +       +   L +  N +  + 
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQD----NINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N+      +    ++  N L  +P  +    S  + LD+ + RI S+PS        L  
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSN 263
                  L  LP  L KL  L    L   
Sbjct: 231 RS--TYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 8e-12
 Identities = 47/280 (16%), Positives = 91/280 (32%), Gaps = 51/280 (18%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM--PET 202
             + +T +P DL       +L     KL V+     + +  L ++  S+N +  +   + 
Sbjct: 17  QESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 203 IGSLSRLIRLDL-HQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLD 259
             +L +L  + +   N +L I         +L    + N  +  LP        +   LD
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134

Query: 260 LHSN----QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG-NPLRTLR 314
           +  N     ++            +L L+ N +  +       T L +L L+  N L  L 
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL- 193

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
                                           D+   A+        L +    + ++PS
Sbjct: 194 ------------------------------PNDVFHGASGP----VILDISRTRIHSLPS 219

Query: 375 EIWEAGEITKLD-LSRNSIQELPPELSSCASLQTLILSRN 413
              E   + KL   S  ++++LP  L    +L    L+  
Sbjct: 220 YGLE--NLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM 104
              L L  N I+++         L  +    +N L ELP            LD+S   I 
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 105 KIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
            +P     +   L     S+  LK+LP +L + + L +   +   
Sbjct: 216 SLPSYGLENLKKLRAR--STYNLKKLP-TLEKLVALMEASLTYPS 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  106 bits (266), Expect = 1e-25
 Identities = 49/248 (19%), Positives = 105/248 (42%), Gaps = 10/248 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K+    +N+        +L  +T L+     ++ +   +  L+ L  L++  N I  
Sbjct: 20  NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD 77

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   + + T + + + S N LK + S++    ++     ++  IT +   LA  S +  L
Sbjct: 78  LA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVL 134

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
            ++ N++T +S   +A  T L  L      ++ +   + +LS+L  L    N+I  I S 
Sbjct: 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDI-SP 190

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           ++   +L E ++ NN +S +   L   S L  + L +  +    V      +    +   
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 286 SLSGLPPE 293
           S + + P 
Sbjct: 250 SGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.8 bits (249), Expect = 2e-23
 Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 33/260 (12%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           I     I  +      L     +    + +++      +L  + +L      +  I   +
Sbjct: 3   ITQPTAINVI-FPDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GV 59

Query: 111 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170
                L+  +   NQ+ +L + L     +++ + S N + ++   +A    +  LD+   
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTST 117

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
           ++T ++                          +  LS L  L L  N+I +I S ++G  
Sbjct: 118 QITDVTP-------------------------LAGLSNLQVLYLDLNQITNI-SPLAGLT 151

Query: 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
           +L    +GN  +S L   L  LSKL TL    N++ +    A    L  + L NN +S +
Sbjct: 152 NLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV 210

Query: 291 PPEIGKMTTLRKLLLTGNPL 310
            P +   + L  + LT   +
Sbjct: 211 SP-LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.9 bits (226), Expect = 3e-20
 Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 10/179 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            +++    N++       +   IT L      +  +   +    +L  L L  N+I D  
Sbjct: 22  IKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLA 79

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
              L +L+ ++ L+L  NPL+ V       +  ++ LDL+     + +  P + L +LQ 
Sbjct: 80  P--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST--QITDVTPLAGLSNLQV 133

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
           LYL   Q+      +  L  L+ L +    +  +     NL+ LT L   DN IS + P
Sbjct: 134 LYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDISP 190

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 39/181 (21%), Positives = 79/181 (43%), Gaps = 12/181 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
             L L+   ++ + + +    +IT+L+LS N ++ +   ++   S++TL L+  +I D  
Sbjct: 66  IGLELKDNQITDL-APLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVT 123

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L  LS+L  L LD N +  +       +  LQ L +    ++ L    P ++L  L 
Sbjct: 124 P--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT---PLANLSKLT 176

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            L     ++ +    +  L  L  + L  N +  +     N ++L  + L++  I+  P 
Sbjct: 177 TLKADDNKISDIS-PLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPV 234

Query: 539 E 539
            
Sbjct: 235 F 235

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.7 bits (215), Expect = 6e-19
 Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 10/179 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
             LS  G  ++ I   +     +  L+L  N I +L P L +   +  L LS N +K+  
Sbjct: 44  TTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS 101

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
              +  L S+  L L +  +  V       +  LQ+L L  N   +    P + L +LQ 
Sbjct: 102 A--IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLN--QITNISPLAGLTNLQY 155

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
           L +   Q+ +    +  L +L  L    N +  I     +L +L E+ L +N IS + P
Sbjct: 156 LSIGNAQVSDLT-PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 60/325 (18%), Positives = 113/325 (34%), Gaps = 48/325 (14%)

Query: 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203
                I  +       +   K+    + +T       A    +T L A    +  + E +
Sbjct: 4   TQPTAINVI-FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-EGV 59

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263
             L+ LI L+L  N+I  + + +     + E  +  N L  + A +  L  + TLDL S 
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTST 117

Query: 264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
           Q+ +    A    L VL L  N ++ + P +  +T L+ L +    +  L + L N    
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TPLAN---- 171

Query: 324 ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383
             L  L                                L  +   +S I S +     + 
Sbjct: 172 --LSKL------------------------------TTLKADDNKISDI-SPLASLPNLI 198

Query: 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
           ++ L  N I ++ P L++ ++L  + L+   I + P     +L       +       + 
Sbjct: 199 EVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIA 255

Query: 444 SDGFKDIPMLQILDLSYNIASLPEN 468
                D       +L++N+ S   N
Sbjct: 256 PATISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.0 bits (190), Expect = 9e-16
 Identities = 53/311 (17%), Positives = 107/311 (34%), Gaps = 47/311 (15%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +L+  I++   ++ +     + +    +         ++ +   +  L+ L  L+L  NQ
Sbjct: 17  ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           + +        +++ L+LS N L  +   I  + +++ L LT   +  + + L       
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDV-TPLAG----- 127

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
            L  L                              + L L+   ++ I S +     +  
Sbjct: 128 -LSNL------------------------------QVLYLDLNQITNI-SPLAGLTNLQY 155

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L +    + +L P L++ + L TL    NKI D     L SL +L  + L NN +  V  
Sbjct: 156 LSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS- 211

Query: 445 DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 504
               +   L I+ L+    +       ++L     +         AP  I         +
Sbjct: 212 -PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP-IAPATISDNGTYASPN 269

Query: 505 LSQNSLQSIPE 515
           L+ N    I  
Sbjct: 270 LTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           LQ L L  N I  +   L  L  L  L++ + ++S+L   +  L  L +L    N I  I
Sbjct: 131 LQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI 188

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + S   L++    +NQ+ ++ S L    NL     +N  IT+ P    + + +    
Sbjct: 189 SP-LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQP-VFYNNNLVVPNV 245

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
           V+G     ++   I+          + NL + +  
Sbjct: 246 VKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS 512
              +    +  ++ +    + L  +  L      +      +  L  L  L+L  N +  
Sbjct: 21  AIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD 77

Query: 513 IPEGFKNLTSLTELDLSDNNISALPP 538
           +    KNLT +TEL+LS N +  +  
Sbjct: 78  L-APLKNLTKITELELSGNPLKNVSA 102

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 470 PFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLS 529
           P  +L +  ++   +  + +  T    L  +  L      + +I EG + L +L  L+L 
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELK 71

Query: 530 DNNISALPP 538
           DN I+ L P
Sbjct: 72  DNQITDLAP 80

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  107 bits (269), Expect = 6e-25
 Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 32/242 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + + I     I+++             N+    +++      EL+ +  +  + + I  +
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV 58

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I     + K   + N+L ++   L    NL       N I  L   L D  K+  L 
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLS 115

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +E N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I    
Sbjct: 116 LEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-- 170

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
                                 L  L+KL  L L  N + +    A    L VL+L +  
Sbjct: 171 ----------------------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208

Query: 287 LS 288
             
Sbjct: 209 CL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.4 bits (247), Expect = 3e-22
 Identities = 52/236 (22%), Positives = 100/236 (42%), Gaps = 27/236 (11%)

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           + + +    P++ +       P  A  + ++  L +   ++A T + +L ++        
Sbjct: 1   MGETITVSTPIKQIF------PDDAFAETIKDNLKKKSVTDAVT-QNELNSI-------- 45

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            ++     ++ ++   I     +TKL L+ N + ++ P L++  +L  L L  NKIKD  
Sbjct: 46  DQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS 103

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L  L  L  L L++N +  +  +G   +P L+ L L  N I  +      S L  L 
Sbjct: 104 S--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT---VLSRLTKLD 156

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534
            L L   Q+ +    +  L +L+ L LS+N +  +      L +L  L+L      
Sbjct: 157 TLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 99.4 bits (247), Expect = 3e-22
 Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            + +L+  +++   +   E   I ++  + + I+ +   +    ++  L L+ NK+ D  
Sbjct: 24  IKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK 81

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              LT+L +L  L LD N ++ +     KD+  L+ L L +N I+ +        LP L+
Sbjct: 82  P--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDIN---GLVHLPQLE 134

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            LYL   ++ +  T + RL +L  L L  N +  I      LT L  L LS N+IS L  
Sbjct: 135 SLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.5 bits (229), Expect = 5e-20
 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 11/159 (6%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  K +L + S+ +     +   S+  +I + + IK      +  L +++ L L+ N L 
Sbjct: 22  ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 78

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
            +      ++  L  L L  N I  L        L  L+ L L    + +    ++ L Q
Sbjct: 79  DIK--PLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDI-NGLVHLPQ 132

Query: 500 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
           L  L L  N +  I      LT L  L L DN IS + P
Sbjct: 133 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP 170

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.2 bits (223), Expect = 3e-19
 Identities = 50/286 (17%), Positives = 99/286 (34%), Gaps = 50/286 (17%)

Query: 255 LGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314
           +G     S  +K+   +         +L   S++       ++ ++ +++   + +++++
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ 59

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
                      ++YL                         +     +L L G  L+ I  
Sbjct: 60  G----------IQYL-----------------------PNV----TKLFLNGNKLTDI-K 81

Query: 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
            +     +  L L  N I++L   L     L++L L  N I D     L  L  L  L L
Sbjct: 82  PLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL 138

Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTD 493
            NN +  +       +  L  L L  N I+ +    P + L  LQ LYL +  + +    
Sbjct: 139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLR-A 192

Query: 494 ILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPP 538
           +  L+ L +L+L      +       NL     +  +D ++     
Sbjct: 193 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 85.2 bits (210), Expect = 1e-17
 Identities = 52/298 (17%), Positives = 97/298 (32%), Gaps = 71/298 (23%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           + E I     +  +     + +  I+ +L +  +    +                     
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVT--------------------- 38

Query: 246 PAELGKLSKLGTLDLHSNQLKEY-CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
                +L+ +  +  +++ +K    ++     ++ L L+ N L+ + P +  +  L  L 
Sbjct: 39  ---QNELNSIDQIIANNSDIKSVQGIQYLP-NVTKLFLNGNKLTDIKP-LTNLKNLGWLF 93

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N ++ L S          LK L                        +L    K LSL
Sbjct: 94  LDENKIKDLSS----------LKDL-----------------------KKL----KSLSL 116

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424
           E   +S I   +    ++  L L  N I ++   LS    L TL L  N+I D     L 
Sbjct: 117 EHNGISDING-LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP--LA 172

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482
            L+ L  L L  N +  +       +  L +L+L             S+L     +  
Sbjct: 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L L +N I  +   L  L  L  L++  N++S++   +  L  L++L +S N I  +
Sbjct: 133 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL 190

Query: 107 PDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
              +     L   +  S +   +  +     +  +  K ++  + + PE ++D     K 
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKP 248

Query: 166 DVEGNKLT 173
           +V+ +   
Sbjct: 249 NVKWHLPE 256

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  102 bits (257), Expect = 7e-25
 Identities = 54/167 (32%), Positives = 72/167 (43%), Gaps = 7/167 (4%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLS 427
           L ++PS I    +  KLDL    +  L          L  L L  N+++     +   L+
Sbjct: 26  LDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
            L  L L NN L  +P   F  +  L  L L  N + SLP    F  L  L+EL L   Q
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRLNTNQ 142

Query: 487 LREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
           L+  P     +L  L+ L LS N LQS+P G F  L  L  + L  N
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 92.8 bits (231), Expect = 2e-21
 Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 4/138 (2%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
           A  + L L    +    DA    L+ L+ L LD N L+ + +  F D+  L  L L+ N 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKN 519
           +ASLP    F  L  L +LYL   QL+  P+ +  RL +L+ L L+ N LQSIP G F  
Sbjct: 95  LASLPLGV-FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153

Query: 520 LTSLTELDLSDNNISALP 537
           LT+L  L LS N + ++P
Sbjct: 154 LTNLQTLSLSTNQLQSVP 171

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L L +  L  +    F+ +  L  L+L YN + +L     F  L  L  L L   QL   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQLASL 98

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
           P  +   L QL  L L  N L+S+P G F  LT L EL L+ N + ++P 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-R 496
           L  VPS     IP   + LDL     +   +  F  L  L  L L   QL+     +   
Sbjct: 26  LDSVPSG----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 497 LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
           L +L  L L+ N L S+P G F +LT L +L L  N + +LP 
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           DC    L  +PS  G   +       +  + +L +      +K++ L+++ N+L  LS  
Sbjct: 20  DCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           +    T L  L  + N L  +P  +   L++L +L L  N++ S+PS +      L E  
Sbjct: 78  VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           +  N L ++PA    KL+ L TL L +NQL+
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 38/185 (20%)

Query: 280 LDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           LDL +  L+ L       +T L  L L  N L+TL + + +  T                
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT---------------- 83

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
                                  L L    L+++P  +++   ++ KL L  N ++ LP 
Sbjct: 84  -------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124

Query: 398 EL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
            +      L+ L L+ N+++  P      L++L  L L  N L+ VP   F  +  LQ +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 457 DLSYN 461
            L  N
Sbjct: 185 TLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 26/177 (14%)

Query: 45  VDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
            D +KL L    +  L     R L  LT LN+ +N+L  L A +            F+ +
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV------------FDDL 82

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SK 161
                     T L     ++NQL  LP  +   L  L       N + SLP  + D  +K
Sbjct: 83  ----------TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           + +L +  N+L  +        T L  L  S N L  +P      L +L  + L  N
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 40/186 (21%)

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLR 314
           LDL S  L        +   +L+ L+L  N L  L   +   +T L  L L  N L +L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
             + +  T   L  L   L  N+                               L ++PS
Sbjct: 100 LGVFDHLTQ--LDKLY--LGGNQ-------------------------------LKSLPS 124

Query: 375 EIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
            +++   ++ +L L+ N +Q +P        +LQTL LS N+++  P      L  L  +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 433 KLDNNP 438
            L  N 
Sbjct: 185 TLFGNQ 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  101 bits (253), Expect = 4e-24
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I+++             N+    +++      EL+ +  +  + + I  +  
Sbjct: 6   ETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q 62

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
            I     + K   + N+L ++   L    NL       N +  L   L D  K+  L +E
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I   ++G
Sbjct: 121 HNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAG 176

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L   Y+  N +S L   L  L  L  L+L S +     +      +    + N   S
Sbjct: 177 LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 289 GLPPEI 294
            + PEI
Sbjct: 236 LVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 89.0 bits (221), Expect = 7e-20
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 12/180 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            + +L+  +++       E   I ++  + + I+ +   +    ++  L L+ NK+ D  
Sbjct: 27  IKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK 84

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L +L +L  L LD N ++ +     KD+  L+ L L +N I+ +        LP L+
Sbjct: 85  P--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN---GLVHLPQLE 137

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            LYL   ++ +  T + RL +L  L L  N +  I      LT L  L LS N+IS L  
Sbjct: 138 SLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.0 bits (216), Expect = 4e-19
 Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 11/159 (6%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  K +L + S+ +     +   S+  +I + + IK      +  L +++ L L+ N L 
Sbjct: 25  ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
            +      ++  L  L L  N +  L        L  L+ L L    + +    ++ L Q
Sbjct: 82  DIK--PLANLKNLGWLFLDENKVKDLS---SLKDLKKLKSLSLEHNGISDI-NGLVHLPQ 135

Query: 500 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
           L  L L  N +  I      LT L  L L DN IS + P
Sbjct: 136 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP 173

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 86.6 bits (215), Expect = 5e-19
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 12/181 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            ++     ++ ++   I     +TKL L+ N + ++ P L++  +L  L L  NK+KD  
Sbjct: 49  DQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L  L  L  L L++N +  +  +G   +P L+ L L  N I  +      S L  L 
Sbjct: 107 S--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT---VLSRLTKLD 159

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            L L   Q+ +    +  L +L+ L LS+N +  +      L +L  L+L        P 
Sbjct: 160 TLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPI 217

Query: 539 E 539
            
Sbjct: 218 N 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 8/179 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + ++I  +++I+ + + ++ LP +T L ++ NKL+++   +  L  L  L +  N +  +
Sbjct: 48  IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL 105

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +     L       N + ++ + L     L      NN IT +   L+  +K+  L 
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 162

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +E N+++ +    +A  T L  L  SKN ++ +   +  L  L  L+L     L+ P +
Sbjct: 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.0 bits (190), Expect = 9e-16
 Identities = 47/262 (17%), Positives = 93/262 (35%), Gaps = 50/262 (19%)

Query: 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
               +L   S++       ++ ++ +++   + +++++           ++YL       
Sbjct: 26  TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG----------IQYL------- 67

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                             +     +L L G  L+ I   +     +  L L  N +++L 
Sbjct: 68  ----------------PNV----TKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLS 106

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
             L     L++L L  N I D     L  L  L  L L NN +  +       +  L  L
Sbjct: 107 S-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 161

Query: 457 DLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP- 514
            L  N I+ +    P + L  LQ LYL +  + +    +  L+ L +L+L      + P 
Sbjct: 162 SLEDNQISDIV---PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPI 217

Query: 515 EGFKNLTSLTELDLSDNNISAL 536
               NL     +  +D ++   
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.7 bits (184), Expect = 5e-15
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L  N ++ L   L++L  L  L++ HN +S++   +  L  L+SL +  N I  I
Sbjct: 92  LGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI 149

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L       NQ+ ++   L     L +   S N I+ L   LA    +  L+
Sbjct: 150 TV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLE 206

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           +   +      N  ++  +   +  +   L   PE I       + ++  +       
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 50/286 (17%), Positives = 110/286 (38%), Gaps = 27/286 (9%)

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
           + +E I     +  +  +  + +  I+ +L +  +     + +   S+ +    N+ + +
Sbjct: 3   LGSETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS 60

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +   +  L  +  L L+ N+L +    A    L  L L  N +  L   +  +  L+ L 
Sbjct: 61  VQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118

Query: 305 LTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362
           L  N +  +     L        L+ L   L  N+ ++ +      ++  T+L      L
Sbjct: 119 LEHNGISDINGLVHLPQ------LESLY--LGNNKITDITV-----LSRLTKL----DTL 161

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAI 422
           SLE   +S I   +    ++  L LS+N I +L   L+   +L  L L   +  + P   
Sbjct: 162 SLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINH 219

Query: 423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN 468
            ++L   + +K  +  L  V  +   D    +  ++ +++      
Sbjct: 220 QSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 7e-13
 Identities = 56/302 (18%), Positives = 98/302 (32%), Gaps = 47/302 (15%)

Query: 214 LHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC 273
                I  I  S        +  +   +++       +L+ +  +  +++ +K       
Sbjct: 9   TVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQY 66

Query: 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              ++ L L+ N L+ + P +  +  L  L L  N ++ L SSL +      LK L    
Sbjct: 67  LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL-SSLKD------LKKL---- 114

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393
                                     K LSLE   +S I   +    ++  L L  N I 
Sbjct: 115 --------------------------KSLSLEHNGISDING-LVHLPQLESLYLGNNKIT 147

Query: 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
           ++   LS    L TL L  N+I D     L  L+ L  L L  N +  +       +  L
Sbjct: 148 DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNL 202

Query: 454 QILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI 513
            +L+L             S+L     +      L   P  I         ++  +  +  
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL-VTPEIISDDGDYEKPNVKWHLPEFT 261

Query: 514 PE 515
            E
Sbjct: 262 NE 263

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 98.2 bits (245), Expect = 2e-23
 Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 12/197 (6%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRN-SIQELPPEL-SSCASLQTLILS 411
           L  +++ L L   +L  IPS  +     I+++ +S + ++Q+L      + + +  + + 
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 412 RNK-IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN--IASLPE 467
             + +       L  L  L  L + N  L+  P         +  IL+++ N  + S+P 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 468 NPPFSSLP-HLQELYLRRMQLREAPTDILRLQQLRILDLSQN-SLQSIPEG-FKNLTS-L 523
           N  F  L      L L                +L  + L++N  L  I +  F  + S  
Sbjct: 149 NA-FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 524 TELDLSDNNISALPPEL 540
           + LD+S  +++ALP + 
Sbjct: 208 SLLDVSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 98.2 bits (245), Expect = 2e-23
 Identities = 29/188 (15%), Positives = 71/188 (37%), Gaps = 11/188 (5%)

Query: 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRN-KIK 416
            ++  +   ++  IPS          L L    ++ +P    S+  ++  + +S +  ++
Sbjct: 13  EEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 417 DWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
                   +LS ++ +++ +   L  +  D  K++P+L+ L +    +   P+     S 
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 475 PHLQELYLRR-MQLREAPTDILR--LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531
                L +     +   P +  +    +   L L  N   S+     N T L  + L+ N
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189

Query: 532 N-ISALPP 538
             ++ +  
Sbjct: 190 KYLTVIDK 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 32/213 (15%), Positives = 78/213 (36%), Gaps = 24/213 (11%)

Query: 118 KFDCSSNQLKELPSSLG--RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGN-KLT 173
            F  +   ++ +PS     + L L         + ++P    ++   +S++ V  +  L 
Sbjct: 15  DFRVTCKDIQRIPSLPPSTQTLKLI-----ETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 174 VLSNNLIASWTMLTELIASKN--LLNGMPETIGSLSRLIRLDLHQNRILSIP--SSISGC 229
            L ++   + + +T +       L    P+ +  L  L  L +    +   P  + +   
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 230 CSLAEFYM-GNNALSALPAEL--GKLSKLGTLDLHSNQLKEYCVEAC---QLRLSVLDLS 283
                  +  N  ++++P     G  ++  TL L++N      V+       +L  + L+
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYLN 187

Query: 284 -NNSLSGLPPEI--GKMTTLRKLLLTGNPLRTL 313
            N  L+ +  +   G  +    L ++   +  L
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 12/193 (6%)

Query: 46  DLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHN-KLSELPA-AIGELHMLKSLDVSFN- 101
             Q L L   ++  +      NLP ++ + VS +  L +L + +   L  +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFK---ASNNCITSLPEDLA 157
           ++  I  +       L      +  LK  P           F      N  +TS+P +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 158 D--CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI--GSLSRLIRLD 213
              C++   L +  N  T +         +    +     L  + +    G  S    LD
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 214 LHQNRILSIPSSI 226
           + Q  + ++PS  
Sbjct: 212 VSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 38/253 (15%), Positives = 85/253 (33%), Gaps = 55/253 (21%)

Query: 67  LPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSN 124
            P    L +    L  +P+ A   L  +  + VS + ++ ++            F     
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS--------FY---- 77

Query: 125 QLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASW 183
            L ++       + + +       +T +  D L +   +  L +    L +  +      
Sbjct: 78  NLSKV-----THIEIRN----TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK--- 125

Query: 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN-RILSIPS-SISGCCS-LAEFYMGNN 240
                              + S      L++  N  + SIP  +  G C+      + NN
Sbjct: 126 -------------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 241 ALSALPAELGKLSKLGTLDLHSNQ----LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGK 296
             +++       +KL  + L+ N+    + +          S+LD+S  S++ LP +   
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG-- 224

Query: 297 MTTLRKLLLTGNP 309
           +  L++L+     
Sbjct: 225 LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 36/258 (13%), Positives = 81/258 (31%), Gaps = 62/258 (24%)

Query: 209 LIRLDLHQNRILSIPS-SISGCCSLAEFYM-GNNALSALPAEL-GKLSKLGTLDLHSNQL 265
              L L +  + +IPS + S   +++  Y+  +  L  L +     LSK+  +++ +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-- 90

Query: 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
                               +L+ + P+   ++  L+ L +    L+     L    +  
Sbjct: 91  -------------------RNLTYIDPDALKELPLLKFLGIFNTGLKMF-PDLTKVYSTD 130

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE--AGEI 382
           +   L                                   +   +++IP   ++    E 
Sbjct: 131 IFFIL--------------------------------EITDNPYMTSIPVNAFQGLCNET 158

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNK-IKDWPDAILTSL-SSLSCLKLDNNPLR 440
             L L  N    +     +   L  + L++NK +          + S  S L +    + 
Sbjct: 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 441 QVPSDGFKDIPMLQILDL 458
            +PS G + +  L   + 
Sbjct: 219 ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 12/156 (7%)

Query: 360 KELSLEG-MNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSCASLQTLILSRN-K 414
             + +    NL+ I  +  +    +  L +    ++  P    + S      L ++ N  
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 415 IKDWPDAILTSLSSLSC-LKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPF 471
           +   P      L + +  LKL NN    V    F     L  + L+ N  +  + ++  F
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDA-F 200

Query: 472 SSLPH-LQELYLRRMQLREAPTDILR-LQQLRILDL 505
             +      L + +  +   P+  L  L++L   + 
Sbjct: 201 GGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 10/153 (6%)

Query: 47  LQKLILAHNN-IEKLKED-LRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNS 102
           +  + + +   +  +  D L+ LPLL  L + +  L   P    +    +   L+++ N 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 103 -IMKIPDEI--GSATALVKFDCSSNQLKELPSSLGRCLNLSDFK-ASNNCITSLPEDLAD 158
            +  IP     G     +     +N    +         L       N  +T + +D   
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 159 --CSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              S  S LDV    +T L +  +     L   
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 97.4 bits (243), Expect = 6e-23
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 6/173 (3%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
           +     ++ ++   I     +  L L  N + ++   L    +L  LIL+ N+++  P+ 
Sbjct: 46  IIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNG 103

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 480
           +   L++L  L L  N L+ +P   F  +  L  L+L++N + SLP+   F  L +L EL
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTEL 162

Query: 481 YLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
            L   QL+  P  +  +L QL+ L L QN L+S+P+G F  LTSL  + L DN
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 92.8 bits (231), Expect = 3e-21
 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 11/173 (6%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
               P + +      K +L + S+ +   + +   S+  +I + + IK      +  L +
Sbjct: 10  KQIFPDDAFAET--IKANLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQG--IQYLPN 64

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 487
           +  L L  N L  + +   K++  L  L L+ N + SLP    F  L +L+EL L   QL
Sbjct: 65  VRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGV-FDKLTNLKELVLVENQL 121

Query: 488 REAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
           +  P  +  +L  L  L+L+ N LQS+P+G F  LT+LTELDLS N + +LP 
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            +S    Q  P +    A      L +  + D        L+S+  +  +N+ ++ V   
Sbjct: 4   TVSTPIKQIFPDDAF--AETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQ-- 57

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRIL 503
           G + +P ++ L L  N +  +        L +L  L L   QL+  P  +  +L  L+ L
Sbjct: 58  GIQYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114

Query: 504 DLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
            L +N LQS+P+G F  LT+LT L+L+ N + +LP 
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 50/231 (21%), Positives = 94/231 (40%), Gaps = 40/231 (17%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
           + +L +  +    +      S+ +    N+ + ++   +  L  +  L L  N+L +   
Sbjct: 23  KANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA 80

Query: 271 EACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
                 L+ L L+ N L  LP  +  K+T L++L+L  N L++L   + +  T       
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT------- 133

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 388
                                           L+L    L ++P  +++    +T+LDLS
Sbjct: 134 ----------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165

Query: 389 RNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            N +Q LP  +      L+ L L +N++K  PD +   L+SL  + L +NP
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 23/203 (11%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
             S+   +  P          NL         +T         + + ++    + +  + 
Sbjct: 4   TVSTPIKQIFPDDAFAETIKANLK-----KKSVTDAVTQNEL-NSIDQIIANNSDIKSVQ 57

Query: 177 NNLIASWTMLTELIASKNLLNGMPETIG---SLSRLIRLDLHQNRILSIPSSI-SGCCSL 232
              I     +  L    N L      I     L+ L  L L  N++ S+P+ +     +L
Sbjct: 58  G--IQYLPNVRYLALGGNKL----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111

Query: 233 AEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK--EYCVEACQLRLSVLDLSNNSLSG 289
            E  +  N L +LP  +  KL+ L  L+L  NQL+     V      L+ LDLS N L  
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171

Query: 290 LPPEI-GKMTTLRKLLLTGNPLR 311
           LP  +  K+T L+ L L  N L+
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K  L   ++         L  +  +  +++ +  +   I  L  ++ L +  N +  
Sbjct: 20  ETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD 77

Query: 106 IP--DEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SK 161
           I    E+ + T L     + NQL+ LP+ +   L NL +     N + SLP+ + D  + 
Sbjct: 78  ISALKELTNLTYL---ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRIL 220
           ++ L++  N+L  L   +    T LTEL  S N L  +PE +   L++L  L L+QN++ 
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 221 SIP 223
           S+P
Sbjct: 195 SVP 197

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 95.1 bits (237), Expect = 2e-22
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 28/166 (16%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
           L+ IP  I +     +L L+ N    L                          I   L  
Sbjct: 23  LNKIPEHIPQ--YTAELRLNNNEFTVLEA----------------------TGIFKKLPQ 58

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 487
           L  +   NN +  +    F+    +  + L+ N + ++     F  L  L+ L LR  ++
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM-FKGLESLKTLMLRSNRI 117

Query: 488 REAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
                D    L  +R+L L  N + ++  G F  L SL+ L+L  N
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 90.5 bits (225), Expect = 5e-21
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 432 LKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
           L+L+NN    + + G FK +P L+ ++ S N I  + E   F     + E+ L   +L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-FEGASGVNEILLTSNRLEN 95

Query: 490 APTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
               +   L+ L+ L L  N +  +    F  L+S+  L L DN I+ + P
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL- 495
           L ++P      IP     L L+ N    L     F  LP L+++     ++ +       
Sbjct: 23  LNKIPEH----IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78

Query: 496 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
               +  + L+ N L+++    FK L SL  L L  N I+ +  
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 78.9 bits (195), Expect = 6e-17
 Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE-LSSCASLQTLI 409
             +   + EL L     + + +        ++ K++ S N I ++        + +  ++
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN 468
           L+ N++++    +   L SL  L L +N +  V +D F  +  +++L L  N I ++   
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 469 PPFSSLPHLQELYL 482
             F +L  L  L L
Sbjct: 148 -AFDTLHSLSTLNL 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 29/151 (19%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+ +L ++P  +                   P+        ++L +  N+ TVL    
Sbjct: 17  DCSNQKLNKIPEHI-------------------PQYT------AELRLNNNEFTVLEATG 51

Query: 180 I-ASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           I      L ++  S N +  + E      S +  + L  NR+ ++   +  G  SL    
Sbjct: 52  IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           + +N ++ +  +    LS +  L L+ NQ+ 
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           ++++     ++ I    +E A  + ++ L+ N ++ +  ++     SL+TL+L  N+I  
Sbjct: 60  RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             +     LSS+  L L +N +  V    F  +  L  L+L  N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 279 VLDLSNNSLSGLPPEIG--KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L L+NN  + L       K+  LRK+  + N +  +      G                
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---------------- 79

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQEL 395
                          A+ +     E+ L    L  +  ++++    +  L L  N I  +
Sbjct: 80  ---------------ASGV----NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120

Query: 396 PPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
             +     +S++ L L  N+I         +L SLS L L  NP 
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
               +L L +N    L+     + LP L  +N S+NK++++   A      +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC 159
            +  +  ++     +L      SN++  + +     L ++      +N IT++     D 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 160 -SKMSKLDVEGN 170
              +S L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 94.3 bits (235), Expect = 3e-22
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           ++L+ N ++ +P   F     L+ +DLS N I+ L  +  F  L  L  L L   ++ E 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNKITEL 95

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 539
           P  +   L  L++L L+ N +  +    F++L +L  L L DN +  +   
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 87.8 bits (218), Expect = 5e-20
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 29/166 (17%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLS 427
           L+ IP+ + E   IT++ L +N+I+ +PP   S    L+ + LS N+I +        L 
Sbjct: 23  LTEIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
           SL+ L L  N + ++P   F+ +  LQ+L L+ N I  L  +  F  L +L  L      
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLS----- 134

Query: 487 LREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
                             L  N LQ+I +G F  L ++  + L+ N
Sbjct: 135 ------------------LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL- 495
           L ++P++    +P  +  + L  N I  +P    FS    L+ + L   Q+ E   D   
Sbjct: 23  LTEIPTN----LPETITEIRLEQNTIKVIPPGA-FSPYKKLRRIDLSNNQISELAPDAFQ 77

Query: 496 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
            L+ L  L L  N +  +P+  F+ L SL  L L+ N I+ L  
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 79.3 bits (196), Expect = 5e-17
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSR 412
           L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      SL +L+L  
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 413 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPF 471
           NKI + P ++   L SL  L L+ N +  +  D F+D+  L +L L  N + ++ +   F
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-TF 148

Query: 472 SSLPHLQELYL 482
           S L  +Q ++L
Sbjct: 149 SPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
           DC    L E+P++L      + L       N I  +P    +   K+ ++D+  N+++ L
Sbjct: 17  DCRGKGLTEIPTNLPETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
           + +       L  L+   N +  +P+++   L  L  L L+ N+I  +         +L 
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
              + +N L  +       L  + T+ L  N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 5/131 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
             + ++ L  N I+ +          L  +++S+N++SEL       L  L SL +  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLAD-C 159
           I ++P  +     +L     ++N++  L     + L NL+     +N + ++ +      
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 160 SKMSKLDVEGN 170
             +  + +  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNL 520
             +P N P      + E+ L +  ++  P       ++LR +DLS N +  +    F+ L
Sbjct: 24  TEIPTNLP----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79

Query: 521 TSLTELDLSDNNISALPPEL 540
            SL  L L  N I+ LP  L
Sbjct: 80  RSLNSLVLYGNKITELPKSL 99

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.8 bits (148), Expect = 9e-11
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 360 KELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           + + L    +S +  +       +  L L  N I ELP  L     SLQ L+L+ NKI  
Sbjct: 59  RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
                   L +L+ L L +N L+ +    F  +  +Q + L+ N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 38/164 (23%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
            + L  N++  +PP        LR++ L+ N +  L      G     L+ L        
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-----LRSL-------- 82

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELP 396
                                   L L G  ++ +P  ++E    +  L L+ N I  L 
Sbjct: 83  ----------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120

Query: 397 PEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
            +      +L  L L  NK++       + L ++  + L  NP 
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 90.5 bits (225), Expect = 7e-21
 Identities = 50/131 (38%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            + Q L L  N+I      +  SL +L  L L +N L  +P   F  +  L +LDL  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNL 520
           +  LP    F  L HL+EL++   +L E P  I RL  L  L L QN L+SIP G F  L
Sbjct: 100 LTVLPSAV-FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158

Query: 521 TSLTELDLSDN 531
           +SLT   L  N
Sbjct: 159 SSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 81.3 bits (201), Expect = 1e-17
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L L +N + ++    F  +  L+ L L  N + +LP    F SL  L  L L   QL   
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTVLDLGTNQLTVL 103

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 537
           P+ +  RL  L+ L +  N L  +P G + LT LT L L  N + ++P
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            L +  N++T L   +  S   L EL    N L  +P  +  SL++L  LDL  N++  +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           PS++      L E +M  N L+ LP  + +L+ L  L L  NQLK
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 5/148 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNN 178
           DC S +   +P+  G   N       +N IT L   + D    + +L +  N+L  L   
Sbjct: 25  DCRSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
           +  S T LT L    N L  +P  +   L  L  L +  N++  +P  I     L    +
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142

Query: 238 GNNALSALPAE-LGKLSKLGTLDLHSNQ 264
             N L ++P     +LS L    L  N 
Sbjct: 143 DQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNL 520
           AS+P   P ++    Q LYL   Q+ +    +   L  L+ L L  N L ++P G F +L
Sbjct: 32  ASVPAGIPTNA----QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87

Query: 521 TSLTELDLSDNNISALPP 538
           T LT LDL  N ++ LP 
Sbjct: 88  TQLTVLDLGTNQLTVLPS 105

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            L LH N+I  +   +     +L E Y+G+N L ALP  +   L++L  LDL +NQL   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV- 102

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
                 L          L  L +  N L+ LP  I ++T L  L L  N L+
Sbjct: 103 ------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDL-RNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
            + Q L L  N I KL+  +  +L  L  L +  N+L  LP  +   L  L  LD+  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           +  +P  +      L +     N+L ELP  + R  +L+      N + S+P 
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 45/166 (27%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRS----SLVNGPTPALLKYLRSRL 333
           +L L +N ++ L P +   +  L++L L  N L  L      SL                
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-------------- 89

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSI 392
                                       L L    L+ +PS +++    + +L +  N +
Sbjct: 90  -------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            ELP  +     L  L L +N++K  P      LSSL+   L  NP
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            ++D        +P  I +           NQ+ +L   +   L NL +    +N + +L
Sbjct: 22  TTVDCRSKRHASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
           P  + D  ++++ LD+  N+LTVL + +      L EL    N L  +P  I  L+ L  
Sbjct: 80  PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139

Query: 212 LDLHQNRILSIP 223
           L L QN++ SIP
Sbjct: 140 LALDQNQLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 362 LSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWP 419
           L L    L A+P  ++    ++T LDL  N +  LP  +      L+ L +  NK+ + P
Sbjct: 69  LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP 128

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             I   L+ L+ L LD N L+ +P   F  +  L    L  N
Sbjct: 129 RGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 86.3 bits (214), Expect = 1e-19
 Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           T ++        +P  +   A    L L  N +K  P+ +   L+SL+ L L  N L+ +
Sbjct: 10  TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQL 500
           P+  F  +  L  L+LS N + SLP    F  L  L+EL L   QL+  P  +  +L QL
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGV-FDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126

Query: 501 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
           + L L QN L+S+P+G F  LTSL  + L DN
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 79.3 bits (196), Expect = 4e-17
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L L+ N L+ +P+  F ++  L  L L  N + SLP    F+ L  L  L L   QL+  
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-FNKLTSLTYLNLSTNQLQSL 91

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALP 537
           P  +  +L QL+ L L+ N LQS+P+G F  LT L +L L  N + ++P
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 454 QILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQS 512
             LDL  N      N  F  L  L +LYL   +L+  P  +  +L  L  L+LS N LQS
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 513 IPEG-FKNLTSLTELDLSDNNISALPP 538
           +P G F  LT L EL L+ N + +LP 
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPD 117

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            LD+E N L  L N +    T LT+L    N L  +P  +   L+ L  L+L  N++ S+
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           P+ +      L E  +  N L +LP  +  KL++L  L L+ NQLK
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNL 520
            S+P   P  +      L L    L+  P  +   L  L  L L  N LQS+P G F  L
Sbjct: 20  TSVPTGIPAQT----TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75

Query: 521 TSLTELDLSDNNISALPP 538
           TSLT L+LS N + +LP 
Sbjct: 76  TSLTYLNLSTNQLQSLPN 93

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 19/113 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            LDL  N + S+P+ +     SL + Y+G N L +LP  +  KL+ L  L+L +NQL+  
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLR 311
                 L         +L  L L+ N L  LP  +  K+T L+ L L  N L+
Sbjct: 91  ------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           T +       + +P  I        LD+  NS+  +P+ +    T+L +     N+L+ L
Sbjct: 10  TTVECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLT 187
           P+ +   L +L+    S N + SLP  + D  +++ +L +  N+L  L + +    T L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           +L   +N L  +P+ +   L+ L  + LH N
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 362 LSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWP 419
           L L G  L ++P+ ++     +T L+LS N +Q LP  +      L+ L L+ N+++  P
Sbjct: 57  LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           D +   L+ L  L+L  N L+ VP   F  +  LQ + L  N
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            +++        +P  I + T     D  +N LK LP+ +   L +L+      N + SL
Sbjct: 10  TTVECYSQGRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLI 210
           P  + +  + ++ L++  N+L  L N +    T L EL  + N L  +P+ +   L++L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 211 RLDLHQNRILSIP 223
            L L+QN++ S+P
Sbjct: 128 DLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 38/163 (23%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
            LDL  NSL  LP  +  ++T+L +L L GN L++L + + N  T               
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT--------------- 76

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELP 396
                               +   L+L    L ++P+ +++   ++ +L L+ N +Q LP
Sbjct: 77  --------------------SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116

Query: 397 PEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             +      L+ L L +N++K  PD +   L+SL  + L +NP
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
                L L  N+++ L       L  LT L +  NKL  LP  +  +L  L  L++S N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPE 154
           +  +P+ +    T L +   ++NQL+ LP  +  +   L D +   N + S+P+
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK--EYC 269
           + +     S+P+ I          +  N+L +LP     +L+ L  L L  N+L+     
Sbjct: 13  ECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70

Query: 270 VEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
           V      L+ L+LS N L  LP  +  K+T L++L L  N L++L
Sbjct: 71  VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 88.7 bits (219), Expect = 9e-19
 Identities = 44/249 (17%), Positives = 67/249 (26%), Gaps = 15/249 (6%)

Query: 89  ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
                K   +  +       +  +   L + + S  +   L S L  C  L +       
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQEL--EPEN 381

Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLS 207
              L   +     +  L  E   L   S    +               L          +
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            +  L L    +  +   +     +    + +N L ALP  L  L  L  L    N L+ 
Sbjct: 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500

Query: 268 YCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               A   RL  L L NN L        +     L  L L GN L              +
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---------EGI 551

Query: 326 LKYLRSRLP 334
            + L   LP
Sbjct: 552 QERLAEMLP 560

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 83.7 bits (206), Expect = 3e-17
 Identities = 49/245 (20%), Positives = 82/245 (33%), Gaps = 20/245 (8%)

Query: 258 LDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           + L           A   +L   +LS    + L  E+     L++L              
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL----- 386

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITM-ATRLSVTSKELSLEGMNLSAIPSEI 376
                  ++  +R+  P   + E       L  +   R +      S   +         
Sbjct: 387 ------TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE---NSVLK 437

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
            E  ++  L L+   +  L   L     +  L LS N+++  P A L +L  L  L+  +
Sbjct: 438 MEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASD 495

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL 495
           N L  V   G  ++P LQ L L  N +       P  S P L  L L+   L +      
Sbjct: 496 NALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553

Query: 496 RLQQL 500
           RL ++
Sbjct: 554 RLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 79.0 bits (194), Expect = 9e-16
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 24/201 (11%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ----------- 406
           + KE  L          +     ++ + +LS      L  EL SC  LQ           
Sbjct: 327 SQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 386

Query: 407 TLILSRNKIKD--WPDAILTSLSSLSCL--------KLDNNPLRQVPSDGFKDIPMLQIL 456
           T+IL    +    +    L   S+L  +            +      S    +   +++L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516
            L++   ++  +     L  +  L L   +LR  P  +  L+ L +L  S N+L+++  G
Sbjct: 447 HLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 503

Query: 517 FKNLTSLTELDLSDNNISALP 537
             NL  L EL L +N +    
Sbjct: 504 VANLPRLQELLLCNNRLQQSA 524

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.5 bits (177), Expect = 1e-13
 Identities = 51/360 (14%), Positives = 93/360 (25%), Gaps = 46/360 (12%)

Query: 90  LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCI 149
              L       + +  +      A   V F         + + L                
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL 209
                       +    +           +        E +  K+          +  +L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            R +L   +   + S +  C  L E    N     L   +  +  L  L      L+ + 
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENK--WCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 270 ----VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               V+  +    + DL +  L        +   +R L L    L  L            
Sbjct: 410 TLKAVDPMRA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH---------- 458

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385
           L+ L                           +    L L    L A+P  +     +  L
Sbjct: 459 LEQL---------------------------LLVTHLDLSHNRLRALPPALAALRCLEVL 491

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPS 444
             S N+++ +   +++   LQ L+L  N+++       L S   L  L L  N L Q   
Sbjct: 492 QASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 2e-13
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
            E  D++ L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N
Sbjct: 438 MEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496

Query: 102 SIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           ++  +   + +   L +    +N+L++  +   L  C  L       N +     
Sbjct: 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 2e-10
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 4/166 (2%)

Query: 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
               +    +  L ++  +    + ++   L    LS  K       +  S   L  L+ 
Sbjct: 321 IWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELE-SCKELQELEP 379

Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494
           +N           + +  L     +  +           +       LR   L E     
Sbjct: 380 ENKWCLLTIILLMRALDPLLYEKET--LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK 437

Query: 495 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
           +    +R+L L+   L  +    + L  +T LDLS N + ALPP L
Sbjct: 438 MEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPAL 482

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 82.7 bits (205), Expect = 1e-18
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 5/104 (4%)

Query: 432 LKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
           L L++N L ++ SDG F  +P L  L+L  N +  +  N  F    H+QEL L   +++E
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKE 92

Query: 490 APTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
               +   L QL+ L+L  N +  +  G F++L SLT L+L+ N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 76.2 bits (188), Expect = 3e-16
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 8/104 (7%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL- 495
           L+++P D    IP+    L L+ N +  +  +  F  LPHL +L L+R QL     +   
Sbjct: 20  LKEIPRD----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75

Query: 496 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
               ++ L L +N ++ I    F  L  L  L+L DN IS + P
Sbjct: 76  GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 357 VTSKELSLEGMNLSAIPSEIW--EAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRN 413
           + + EL L    L  I S+        + KL+L RN +  + P      + +Q L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           KIK+  + +   L  L  L L +N +  V    F+ +  L  L+L+ N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 187 TELIASKNLLNGMPET--IGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALS 243
           TEL+ + N L  +      G L  L++L+L +N++  I  +   G   + E  +G N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 244 ALPAEL-GKLSKLGTLDLHSNQLK 266
            +  ++   L +L TL+L+ NQ+ 
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 20/113 (17%)

Query: 211 RLDLHQNRILSIPSS--ISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
            L L+ N +  I S         L +  +  N L+ +        S +  L L  N++KE
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 268 YCVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                  +         +L  L+L +N +S + P     + +L  L L  NP 
Sbjct: 93  -------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
            +L L+   L+ I    +E A  I +L L  N I+E+  ++      L+TL L  N+I  
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116

Query: 418 WPDAILTSLSSLSCLKLDNNPL 439
                   L+SL+ L L +NP 
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED--LADCSKMSKLDVEGNKLTV 174
           DC+   LKE+P  +      L L+D     N +  +  D        + KL+++ N+LT 
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLND-----NELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
           +  N     + + EL   +N +  +   +   L +L  L+L+ N+I  + 
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
           +   +L+L  N + ++  D     LP L  L +  N+L+ +   A      ++ L +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELP 130
            I +I +++      L   +   NQ+  + 
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 80.8 bits (200), Expect = 8e-18
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L LD N    VP +   +   L ++DLS N I++L     FS++  L  L L   +LR  
Sbjct: 36  LYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYNRLRCI 93

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
           P      L+ LR+L L  N +  +PEG F +L++L+ L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 10/103 (9%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL- 495
           L+ +P      IP  +  L L  N    +P+    S+  HL  + L   ++         
Sbjct: 22  LKVLPKG----IPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 496 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALP 537
            + QL  L LS N L+ IP   F  L SL  L L  N+IS +P
Sbjct: 76  NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLT 521
             LP+  P        ELYL   Q    P ++   + L ++DLS N + ++    F N+T
Sbjct: 23  KVLPKGIPRDV----TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78

Query: 522 SLTELDLSDNNISALPP 538
            L  L LS N +  +PP
Sbjct: 79  QLLTLILSYNRLRCIPP 95

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKI 415
               EL L+G   + +P E+     +T +DLS N I  L  +  S+   L TLILS N++
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           +  P      L SL  L L  N +  VP   F D+  L  L +  N
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
            CS+  LK LP  +      L L       N  T +P++L++   ++ +D+  N+++ LS
Sbjct: 16  RCSNKGLKVLPKGIPRDVTELYLDG-----NQFTLVPKELSNYKHLTLIDLSNNRISTLS 70

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N   ++ T L  LI S N L  +P      L  L  L LH N I  +P    +   +L+ 
Sbjct: 71  NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130

Query: 235 FYMGNN 240
             +G N
Sbjct: 131 LAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYC 269
            L L  N+   +P  +S    L    + NN +S L  +    +++L TL L  N+L+   
Sbjct: 35  ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 270 VEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                    L +L L  N +S +P      ++ L  L +  NPL
Sbjct: 95  PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK--EYCVEACQLRLS 278
            +P  I     + E Y+  N  + +P EL     L  +DL +N++        +   +L 
Sbjct: 24  VLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
            L LS N L  +PP     + +LR L L GN +  +
Sbjct: 82  TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           ++  L LS N ++ +PP       SL+ L L  N I   P+     LS+LS L +  NPL
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSI 103
            D+ +L L  N    + ++L N   LT++++S+N++S L       +  L +L +S+N +
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 104 MKIPDEI-GSATALVKFDCSSNQLKELP 130
             IP        +L       N +  +P
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVP 118

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 11/180 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            + +L   +++ +     E   +   +   ++IQ L   +    +L+ L LS N+I D  
Sbjct: 22  VKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISDLS 79

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
              L  L+ L  L ++ N L+ +          L  L L  N   L +      L +L+ 
Sbjct: 80  P--LKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLFLDNN--ELRDTDSLIHLKNLEI 132

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           L +R  +L+     +  L +L +LDL  N + +   G   L  +  +DL+       P +
Sbjct: 133 LSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 12/159 (7%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
              K +L + S+ +L       + +Q      + I+      +   ++L  L L +N + 
Sbjct: 20  NAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS 76

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
            +     KD+  L+ L ++ N + +L           L  L+L   +LR+    ++ L+ 
Sbjct: 77  DL--SPLKDLTKLEELSVNRNRLKNLN----GIPSACLSRLFLDNNELRD-TDSLIHLKN 129

Query: 500 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
           L IL +  N L+SI      L+ L  LDL  N I+    
Sbjct: 130 LEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNTGG 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 9/177 (5%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             K  L   ++  L    + L  +   N  ++ +  L   +     LK L +S N I  +
Sbjct: 21  AVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL 78

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L +   + N+LK L  +      LS     NN +    + L     +  L 
Sbjct: 79  SP-LKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILS 134

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223
           +  NKL  +    +   + L  L    N +      +  L ++  +DL   + ++ P
Sbjct: 135 IRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 55/245 (22%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I ++      L      N+    +++L +   EL  +++ +   ++I  +  
Sbjct: 1   ESIQRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-- 56

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
                                 + +    NL +   S+N I+ L   L D +K+ +L V 
Sbjct: 57  ----------------------AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVN 93

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N+L  L+         L+ L    N L    +++  L  L  L +  N++ SI      
Sbjct: 94  RNRLKNLNGI---PSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM---- 145

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
                               LG LSKL  LDLH N++          +++ +DL+     
Sbjct: 146 --------------------LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185

Query: 289 GLPPE 293
             P +
Sbjct: 186 NEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 12/153 (7%)

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG 446
                I ++ P     A+     L +  + D        LS +     DN+ ++ +   G
Sbjct: 4   QRPTPINQVFP-DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL--AG 58

Query: 447 FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDL 505
            +    L+ L LS+N I+ L    P   L  L+EL + R +L+    + +    L  L L
Sbjct: 59  MQFFTNLKELHLSHNQISDLS---PLKDLTKLEELSVNRNRLKN--LNGIPSACLSRLFL 113

Query: 506 SQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
             N L+   +   +L +L  L + +N + ++  
Sbjct: 114 DNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM 145

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.8 bits (174), Expect = 7e-14
 Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 14/208 (6%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +Q     ++NI+ L   ++    L  L++SHN++S+L   + +L  L+ L V+ N +  +
Sbjct: 43  VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKNL 100

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +  L +    +N+L++   SL    NL      NN + S+   L   SK+  LD
Sbjct: 101 --NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLD 156

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
           + GN++T      +     +  +  +       P      L     +     R +S P  
Sbjct: 157 LHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS-PYY 213

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLS 253
           IS   S  +  +       LP    ++S
Sbjct: 214 ISNGGSYVDGCVLWE----LPVYTDEVS 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 38/233 (16%), Positives = 74/233 (31%), Gaps = 45/233 (19%)

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
              L+     +L    + +   +     +   +  N+++  L   +   T L++L L+ N
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHN 73

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            +  L S L +      L  L                              +ELS+    
Sbjct: 74  QISDL-SPLKD------LTKL------------------------------EELSVNRNR 96

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
           L  +      +  +++L L  N +++    L    +L+ L +  NK+K      L  LS 
Sbjct: 97  LKNLNGI--PSACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVM--LGFLSK 151

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481
           L  L L  N +      G   +  +  +DL+              L     + 
Sbjct: 152 LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 40/249 (16%), Positives = 80/249 (32%), Gaps = 48/249 (19%)

Query: 214 LHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC 273
                I  +     G  +  +  +G  +++ L +   +LS +   +  ++ ++       
Sbjct: 4   QRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAGMQF 61

Query: 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              L  L LS+N +S L P +  +T L +L +  N L     +L   P+  L        
Sbjct: 62  FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL----KNLNGIPSACL-------- 108

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393
                                       L L+   L      +     +  L +  N ++
Sbjct: 109 --------------------------SRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLK 141

Query: 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
            +   L   + L+ L L  N+I +     LT L  ++ + L        P     +   L
Sbjct: 142 SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPE---L 195

Query: 454 QILDLSYNI 462
            I +   + 
Sbjct: 196 YITNTVKDP 204

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.5 bits (201), Expect = 4e-17
 Identities = 52/274 (18%), Positives = 85/274 (31%), Gaps = 23/274 (8%)

Query: 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
            L   +  +   +  G   +I K  +L++L +    +     S +      +L    S L
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARI----PSRILFGALRVLGI--SGL 97

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-----WEAGEITKLDLS 388
            E        T      +          L+L  ++ +   + +     W    +  L ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 389 RNSIQELPPELSS-CASLQTLILSRNKIKD----WPDAILTSLSSLSCLKLDNNPLRQVP 443
           +        E      +L TL LS N                  +L  L L N  +    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 444 SDG---FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
                       LQ LDLS+N +      P       L  L L    L++ P  +    +
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275

Query: 500 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 533
           L +LDLS N L   P     L  +  L L  N  
Sbjct: 276 LSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 4e-16
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 22/249 (8%)

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS-KELSLEGMN 368
           L+ + +    G    ++K L   L       A      L      L ++  +EL+LE + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLS--LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 369 LSA---IPSEIWEAGEITKLDLSRNSIQELPPELSSC-----ASLQTLILSRNKIKDWPD 420
           ++     P       ++  L+L   S       L+         L+ L +++    ++  
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 421 AILTSLSSLSCLKLDNNPLRQ----VPSDGFKDIPMLQILDLSYN-IASLPENPP--FSS 473
             +    +LS L L +NP       + +      P LQ+L L    + +         ++
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 474 LPHLQELYLRRMQLREAPTDI--LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531
              LQ L L    LR+A          QL  L+LS   L+ +P+G      L+ LDLS N
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYN 284

Query: 532 NISALPPEL 540
            +   P   
Sbjct: 285 RLDRNPSPD 293

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 53/285 (18%), Positives = 85/285 (29%), Gaps = 59/285 (20%)

Query: 43  EAVDLQKLILAHNNI--EKLKEDLRNLPL-----LTVLNVSHNKLSELPAAIGELHMLKS 95
           +++ L++L +    I    L   LR L +     LT+ N+     +  P        L  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           L++   S       +               LK L               +     +   +
Sbjct: 126 LNLRNVSWATRDAWLAEL-----QQWLKPGLKVL-------------SIAQAHSLNFSCE 167

Query: 156 L-ADCSKMSKLDVEGNKLTVLSNNLIA----SWTMLTELIASKNLLNGMPETIGSL---- 206
                  +S LD+  N        + A     +  L  L      +        +L    
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
            +L  LDL  N +     + S                         S+L +L+L    LK
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPS---------------------CDWPSQLNSLNLSFTGLK 266

Query: 267 EYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           +  V       LSVLDLS N L   P    ++  +  L L GNP 
Sbjct: 267 Q--VPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 52/321 (16%), Positives = 79/321 (24%), Gaps = 60/321 (18%)

Query: 119 FDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
           F+C      EL    GR L     +           D+     + +L V   ++      
Sbjct: 28  FNCLGAADVELYGG-GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86

Query: 179 LIA---SWTMLTELIASKNLLNGM---PETIGSLSRLIRLDLHQNRILSIPSSISGCC-- 230
                   + L EL      + G    P    +   L  L+L      +  + ++     
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 231 ---SLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQL------KEYCVEACQLRLSVL 280
               L    +          E       L TLDL  N                   L VL
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 281 DLSNNSLSGLPPEIGKMTTLRKLL----LTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L N  +         +   R  L    L+ N LR    +        L           
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL----------- 255

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                                    L+L    L  +P  +     ++ LDLS N +   P
Sbjct: 256 -----------------------NSLNLSFTGLKQVPKGLPAK--LSVLDLSYNRLDRNP 290

Query: 397 PELSSCASLQTLILSRNKIKD 417
                   +  L L  N   D
Sbjct: 291 SPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 24/196 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
            LNL N S       + +           W    L+ L +A  +      E +R  P L+
Sbjct: 125 ILNLRNVSWATRDAWLAELQQ--------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 72  VLNVSHNKLSELPAAI-----GELHMLKSLDVSFNSIMKIPDEIGSATA----LVKFDCS 122
            L++S N        I      +   L+ L +    +        +  A    L   D S
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 123 SNQLKELPSSLG--RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
            N L++   +        L+    S   +  +P+ L   +K+S LD+  N+L        
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP--SP 292

Query: 181 ASWTMLTELIASKNLL 196
                +  L    N  
Sbjct: 293 DELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 47  LQKLILAHNNIEKL----KEDLRNLPLLTVLNVSHNKLSELPAAIGELHM--LKSLDVSF 100
           LQ L L +  +E               L  L++SHN L +   A        L SL++SF
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 101 NSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT 150
             + ++P  + +   L   D S N+L   PS       + +     N   
Sbjct: 263 TGLKQVPKGLPA--KLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKGNPFL 309

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 36/219 (16%), Positives = 79/219 (36%), Gaps = 37/219 (16%)

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
           VN P      YL   L ++  +    T+  + ++          ++L  +N++ + + I 
Sbjct: 15  VNIPDSTFKAYLNGLLGQSSTANI--TEAQMNSL--------TYITLANINVTDL-TGIE 63

Query: 378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
            A  I  L ++        P +S  ++L+ L +    +       L+ L+SL+ L + ++
Sbjct: 64  YAHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRL 497
                       +P +  +DLSY       N   + +  L+                  L
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSY-------NGAITDIMPLKT-----------------L 158

Query: 498 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 536
            +L+ L++  + +     G ++   L +L      I   
Sbjct: 159 PELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 7/159 (4%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
                 L ++S   +    +   SL  + L+   + D     +    ++  L ++N    
Sbjct: 24  AYLNGLLGQSSTANITE--AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT 79

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQ 499
               +    +  L+ L +     +  + P  S L  L  L +          T I  L +
Sbjct: 80  NY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 500 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
           +  +DLS N   +     K L  L  L++  + +     
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 7e-13
 Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 7/195 (3%)

Query: 55  NNIEKLKEDLRNLP---LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
               K  +D  N+P       LN    + S       +++ L  + ++  ++  +   I 
Sbjct: 5   QTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIE 63

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGN 170
            A  +     ++       + +    NL   +     +TS    +L+  + ++ LD+  +
Sbjct: 64  YAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
                    I +   +  +  S N        + +L  L  L++  + +      I    
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFP 181

Query: 231 SLAEFYMGNNALSAL 245
            L + Y  +  +   
Sbjct: 182 KLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 5/155 (3%)

Query: 138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN-LL 196
           +L+    +N  +T L   +     +  L +     T  +   I+  + L  L      + 
Sbjct: 45  SLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 197 NGMPETIGSLSRLIRLDLHQNRI-LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL 255
           +     +  L+ L  LD+  +    SI + I+    +    +  N        L  L +L
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161

Query: 256 GTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
            +L++  + + +Y       +L+ L   + ++ G 
Sbjct: 162 KSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           LT +  +   +  +   I     +  L ++     +  + ISG  +L    +    +++ 
Sbjct: 46  LTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSD 103

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
               L  L+ L  LD+  +   +  +       +++ +DLS N        +  +  L+ 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 303 LLLTGNPLRTLR 314
           L +  + +   R
Sbjct: 164 LNIQFDGVHDYR 175

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 12/139 (8%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
           A+ QT + +     + PD+   +  +    +     + +        +  L  + L+   
Sbjct: 2   AAEQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITE------AQMNSLTYITLANIN 55

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNL 520
           +  L          ++++L +  +        I  L  L  L +    + S        L
Sbjct: 56  VTDLT---GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 521 TSLTELDLSDNNISALPPE 539
           TSLT LD+S +        
Sbjct: 112 TSLTLLDISHSAHDDSILT 130

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 72.3 bits (178), Expect = 4e-15
 Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L+L++N L+ +P   F  +  L  L LS N I SLP+   F  L  L  LYL   +L+  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV-FDKLTKLTILYLHENKLQSL 91

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
           P  +  +L QL+ L L  N L+S+P+G F  LTSL ++ L  N
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 454 QILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQ 511
             L+L  N + SLP    F  L  L +L L + Q++  P  +  +L +L IL L +N LQ
Sbjct: 31  TRLELESNKLQSLPHGV-FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 512 SIPEG-FKNLTSLTELDLSDNNISALP 537
           S+P G F  LT L EL L  N + ++P
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVP 116

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNL 520
            S+P   P S+      L L   +L+  P  +  +L QL  L LSQN +QS+P+G F  L
Sbjct: 20  TSVPTGIPSSA----TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75

Query: 521 TSLTELDLSDNNISALPP 538
           T LT L L +N + +LP 
Sbjct: 76  TKLTILYLHENKLQSLPN 93

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 2/107 (1%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNK 414
            ++  L LE   L ++P  +++   ++TKL LS+N IQ LP  +      L  L L  NK
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           ++  P+ +   L+ L  L LD N L+ VP   F  +  LQ + L  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 19/111 (17%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
           RL+L  N++ S+P  +      L +  +  N + +LP  +  KL+KL  L LH N+L+  
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
                 L         +L  L L  N L  +P  I  ++T+L+K+ L  NP
Sbjct: 91  ------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
            +LSL    + ++P  +++   ++T L L  N +Q LP  +      L+ L L  N++K 
Sbjct: 55  TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114

Query: 418 WPDAILTSLSSLSCLKLDNNP 438
            PD I   L+SL  + L  NP
Sbjct: 115 VPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 23/104 (22%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
           +L++E NKL  L + +    T LT+L  S+N +  +P+ +   L++L  L LH+N++ S+
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           P+ +                        KL++L  L L +NQLK
Sbjct: 92  PNGV----------------------FDKLTQLKELALDTNQLK 113

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 120 DCSSNQLKELPS---SLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVL 175
            C+S  L  +P+   S    L L      +N + SLP  + D  ++++KL +  N++  L
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLELE-----SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
            + +    T LT L   +N L  +P  +   L++L  L L  N++ S+P
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           +L      IEK+   L  L     L +S N + ++ +++  +  L+ L +  N I KI +
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN 87

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLD 166
               A  L +   S NQ+  L S + + +NL     SNN IT+  E   LA   K+  L 
Sbjct: 88  LDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146

Query: 167 VEGNKLT 173
           + GN L 
Sbjct: 147 LAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.9 bits (156), Expect = 6e-12
 Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 7/177 (3%)

Query: 162 MSKLDVEGNKLTVLS--NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
           M+K     + + +     +++A+     EL      +  M  T+ +L     L L  N I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSV 279
             I SS+SG  +L    +G N +  +         L  L +  NQ+         + L V
Sbjct: 61  EKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119

Query: 280 LDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           L +SNN ++      ++  +  L  LLL GNPL        N  T      +  RLP
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL--YNDYKENNATSEYRIEVVKRLP 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 22/181 (12%)

Query: 342 STTKEDLI------TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395
           +TT +D I                 EL      +  + + +        L LS N+I+++
Sbjct: 4   ATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63

Query: 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455
              LS   +L+ L L RN IK   + +     +L  L +  N +  +   G + +  L++
Sbjct: 64  SS-LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVNLRV 119

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYL------RRMQLREAPTD-----ILRLQQLRIL 503
           L +S N I +  E    ++L  L++L L         +   A ++     + RL  L+ L
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

Query: 504 D 504
           D
Sbjct: 180 D 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 51/156 (32%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  +L      I+++   LS+  + + L LS N I          +SSLS ++       
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--------EKISSLSGME------- 70

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500
                       L+IL L  N+           + +L  +                   L
Sbjct: 71  -----------NLRILSLGRNL--------IKKIENLDAV----------------ADTL 95

Query: 501 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 536
             L +S N + S+  G + L +L  L +S+N I+  
Sbjct: 96  EELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 56  NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA 115
             E+ K  +        L+     + ++ A +  L   K L +S N+I KI   +     
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMEN 71

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           L       N +K++ +       L +   S N I SL   +     +  L         +
Sbjct: 72  LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY--------M 122

Query: 176 SNNLIASWTMLTELIASKNL 195
           SNN I +W  + +L A   L
Sbjct: 123 SNNKITNWGEIDKLAALDKL 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.9 bits (183), Expect = 3e-14
 Identities = 92/586 (15%), Positives = 170/586 (29%), Gaps = 173/586 (29%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           IL+    +   ++          +     + ++P +I     L   ++  + I+   D +
Sbjct: 21  ILSVF-EDAFVDNF---------DCKD--VQDMPKSI-----LSKEEI--DHIIMSKDAV 61

Query: 111 GSATALVKFDC----SSNQLKELPSSLGRCLN------LSDFKASNNCITSLPEDL---- 156
                L  F          +++    +   L       +S  K       S+   +    
Sbjct: 62  SGTLRL--FWTLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQ 115

Query: 157 -----ADCSKMSKLDVE-GNKLTVLSNNLIASWTMLTELIASKNL-LNGMP--------- 200
                 D    +K +V        L          L EL  +KN+ ++G+          
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQ-------ALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 201 ETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE--FYMGNNALSALPAELGKLSKLG 256
           +   S     ++D    +I  L++       C+  E    M    L  +       S   
Sbjct: 169 DVCLSYKVQCKMD---FKIFWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 257 -TLDLHSNQLKEYCVEACQLR-----LSVLD-LSNNSLSGLPPEIGKMTTLR-KLLLTGN 308
             + L  + ++       + +     L VL  + N        +      L  K+LLT  
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------AKAWNAFNLSCKILLT-- 271

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG-- 366
              T    + +     L     + +  +  S   T  E    +   L    ++L  E   
Sbjct: 272 ---TRFKQVTD----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 367 ---MNLSAIPSEI---------WEAGEITKLD-LSRNSIQELPPEL-----SSCA----- 403
                LS I   I         W+     KL  +  +S+  L P          +     
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 404 ---SLQTL-ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ----- 454
                  L ++  + IK     ++  L   S ++                IP +      
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-------ISIPSIYLELKV 437

Query: 455 -----------ILDLSYNIA-SLPEN---PP------FSSLP-HLQ--ELYLRRMQLREA 490
                      I+D  YNI  +   +   PP      +S +  HL+  E   R    R  
Sbjct: 438 KLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 491 PTDILR-LQQ-LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534
             D  R L+Q +R    + N+  SI      L +L +L      I 
Sbjct: 497 FLD-FRFLEQKIRHDSTAWNASGSI------LNTLQQLKFYKPYIC 535

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 68.8 bits (169), Expect = 8e-14
 Identities = 41/101 (40%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 435 DNNPLRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPT 492
            N  L  VP+     IP   Q L L+ N I  L     F  L +LQ+LY    +L   PT
Sbjct: 20  QNIRLASVPAG----IPTDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPT 74

Query: 493 DIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
            +  +L QL  LDL+ N L+SIP G F NL SLT + L +N
Sbjct: 75  GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNL 520
           AS+P   P       Q L+L   Q+ +    +   L  L+ L  + N L +IP G F  L
Sbjct: 25  ASVPAGIPTD----KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80

Query: 521 TSLTELDLSDNNISALP 537
           T LT+LDL+DN++ ++P
Sbjct: 81  TQLTQLDLNDNHLKSIP 97

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 418
             ++ + + L+++P+ I    +  +L L+ N I +L P +     +LQ L  + NK+   
Sbjct: 15  TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           P  +   L+ L+ L L++N L+ +P   F ++  L  + L  N
Sbjct: 73  PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 501 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 538
           + L L+ N +  +  G F +L +L +L  + N ++A+P 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           RL L+ N+I  +   +     +L + Y  +N L+A+P  +  KL++L  LDL+ N LK
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            + +L  + N +  +P  +      L  L L+ N +K  P     +L SL+ + L NNP
Sbjct: 58  NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 38/101 (37%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 435 DNNPLRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPT 492
               L  VP+     IP   Q+L L  N I  L     F  L  L  L L   QL   P 
Sbjct: 17  SGKSLASVPTG----IPTTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPA 71

Query: 493 DIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
            +  +L QL  L L+ N L+SIP G F NL SLT + L +N
Sbjct: 72  GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNL 520
           AS+P   P +     Q LYL   Q+ +    +  RL QL  LDL  N L  +P G F  L
Sbjct: 22  ASVPTGIPTT----TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77

Query: 521 TSLTELDLSDNNISALP 537
           T LT+L L+DN + ++P
Sbjct: 78  TQLTQLSLNDNQLKSIP 94

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 418
             +   G +L+++P+ I        L L  N I +L P +      L  L L  N++   
Sbjct: 12  TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           P  +   L+ L+ L L++N L+ +P   F ++  L  + L  N
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 478 QELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISAL 536
             +      L   PT I      ++L L  N +  +  G F  LT LT LDL +N ++ L
Sbjct: 12  TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69

Query: 537 PP 538
           P 
Sbjct: 70  PA 71

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
            L L+ N+I  +   +      L    + NN L+ LPA +  KL++L  L L+ NQLK
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
           ++T+LDL  N +  LP  +      L  L L+ N++K  P     +L SL+ + L NNP
Sbjct: 55  QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 84/488 (17%), Positives = 151/488 (30%), Gaps = 121/488 (24%)

Query: 116 LVKFDCSSNQL-----KELPSSLGRC--LNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
           +   D    +L      EL   L +C  + L D   +      +   L     +++L++ 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N+L             + + + + +             ++ +L L    +     + +G
Sbjct: 65  SNELGD------VGVHCVLQGLQTPS------------CKIQKLSLQNCCL-----TGAG 101

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-------CQLRLSVLD 281
           C  L+               L  L  L  L L  N L +  ++         Q RL  L 
Sbjct: 102 CGVLSS-------------TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 282 LSNNSLS-----GLPPEIGKMTTLRKLLLTGNPL-----RTLRSSLVNGPTPALLKYLRS 331
           L   SLS      L   +      ++L ++ N +     R L   L +  +P  L+ L+ 
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD--SPCQLEALK- 205

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGE-----ITKL 385
            L     +  +      +        + +EL+L    L  +  +E+          +  L
Sbjct: 206 -LESCGVTSDNCRD---LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 386 DLSRNSI-----QELPPELSSCASLQTLILSRNKIKD-----WPDAILTSLSSLSCLKLD 435
            +    I      +L   L +  SL+ L L+ N++ D       + +L     L  L + 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 436 NNPLRQVPSDGFKDI-------PMLQILDLSYN---------IASLPENPPFSSLPHLQE 479
           +       +               L  L +S N         +      P       L+ 
Sbjct: 322 SCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP----GSVLRV 374

Query: 480 LYLRRMQLREAPTDIL-----RLQQLRILDLSQNSLQSIPEGFKNL--------TSLTEL 526
           L+L    + ++    L         LR LDLS N L     G   L          L +L
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG--DAGILQLVESVRQPGCLLEQL 432

Query: 527 DLSDNNIS 534
            L D   S
Sbjct: 433 VLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 74/455 (16%), Positives = 146/455 (32%), Gaps = 80/455 (17%)

Query: 46  DLQKLILAHNNI--EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDV 98
           D+Q L +    +   +  E L  L    V+ +    L+E     + +A+     L  L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 99  SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
             N +     ++G    +         L+     + + L+L +   +      L   L  
Sbjct: 64  RSNEL----GDVG-VHCV------LQGLQTPSCKI-QKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 159 CSKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKNLLN-----GMPETIGSLSR 208
              + +L +  N L      +L   L+     L +L      L+      +   + +   
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 209 LIRLDLHQNRI-----LSIPSSISGC-CSLAEFYMGNNALS-----ALPAELGKLSKLGT 257
              L +  N I       +   +    C L    + +  ++      L   +   + L  
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 258 LDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLS-----GLPPEIGKMTTLRKLLL 305
           L L SN+L +  +            RL  L +    ++      L   +    +L++L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 306 TGNPL-----RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
            GN L     R L  +L+       L+ L   +     + A  +     +     +    
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQ--LESLW--VKSCSFTAACCSH---FSSVLAQNRFLL 344

Query: 361 ELSLEGMNLS-AIPSEIWEAGE-----ITKLDLSRNSI-----QELPPELSSCASLQTLI 409
           EL +    L  A   E+ +        +  L L+   +       L   L +  SL+ L 
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404

Query: 410 LSRNKIKDW-----PDAILTSLSSLSCLKLDNNPL 439
           LS N + D       +++      L  L L +   
Sbjct: 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.4 bits (155), Expect = 6e-11
 Identities = 73/493 (14%), Positives = 141/493 (28%), Gaps = 127/493 (25%)

Query: 70  LTVLNVSHNKLSE--LPAAIGELHMLKSLDVSFNSI-----MKIPDEIGSATALVKFDCS 122
           +  L++   +LS+      +  L   + + +    +       I   +    AL + +  
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 123 SNQL-----KELPSSLGRC------LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK 171
           SN+L       +   L         L+L +   +      L   L     + +L +  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 172 LT-----VLSNNLIASWTMLTELIASKNLLN-----GMPETIGSLSRLIRLDLHQNRI-- 219
           L      +L   L+     L +L      L+      +   + +      L +  N I  
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 220 ---LSIPSSISGC-CSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCV 270
                +   +    C L    + +  ++      L   +   + L  L L SN+L +  +
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244

Query: 271 EA-------CQLRLSVLDLSNNSLS-----GLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
                       RL  L +    ++      L   +    +L++L L GN L        
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-------- 296

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
                              D  A    E L+    +L    + L ++  + +A       
Sbjct: 297 ------------------GDEGARLLCETLLEPGCQL----ESLWVKSCSFTAA------ 328

Query: 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDW-----PDAILTSLSSLSCLK 433
                               L+    L  L +S N+++D         +    S L  L 
Sbjct: 329 ------------CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 434 LDNNPLRQVPSDGFKDI-------PMLQILDLSYN---------IASLPENPPFSSLPHL 477
           L +  +          +         L+ LDLS N         +      P       L
Sbjct: 377 LADCDVS---DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG----CLL 429

Query: 478 QELYLRRMQLREA 490
           ++L L  +   E 
Sbjct: 430 EQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 59/353 (16%), Positives = 102/353 (28%), Gaps = 77/353 (21%)

Query: 231 SLAEFYMGNNALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDL 282
            +    +    LS       L  L +   + L    L E   +           L+ L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
            +N L     ++G    L+ L      ++ L        T A    L S L         
Sbjct: 64  RSNELG----DVGVHCVLQGLQTPSCKIQKLSLQ-NCCLTGAGCGVLSSTLRTLP----- 113

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG------EITKLDLSRNSI---- 392
                          T +EL L    L     ++   G       + KL L   S+    
Sbjct: 114 ---------------TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158

Query: 393 -QELPPELSSCASLQTLILSRNKIKDW-----PDAILTSLSSLSCLKLDNNPLR----QV 442
            + L   L +    + L +S N I +         +  S   L  LKL++  +     + 
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 443 PSDGFKDIPMLQILDLSYN---------IASLPENPPFSSLPHLQELYLRRMQLREAPTD 493
                     L+ L L  N         +     +P       L+ L++    +      
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP----SSRLRTLWIWECGITAKGCG 274

Query: 494 IL-----RLQQLRILDLSQNSL-----QSIPEGFKN-LTSLTELDLSDNNISA 535
            L       + L+ L L+ N L     + + E        L  L +   + +A
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 51/302 (16%), Positives = 85/302 (28%), Gaps = 57/302 (18%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSL 96
           ++   L  + I     + +   L     +  + +S N +       L   I     L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 97  DVSFNSIMKIPDEIGS-ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + S     ++ DEI      L++      +L          + LSD          L + 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT--------VRLSDNAFGPTAQEPLIDF 117

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
           L+  + +  L +  N L   +   IA    L EL  +K   N           L  +   
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNA--------PPLRSIICG 167

Query: 216 QNRI-----LSIPSSISGCCSLAEFYMGNN------ALSALPAELGKLSKLGTLDLHSNQ 264
           +NR+          +      L    M  N          L   L    +L  LDL  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 265 LKEYCVEA------CQLRLSVLDLSNNSL---------SGLPPEIGKMTTLRKLLLTGNP 309
                  A          L  L L++  L                 +   L+ L L  N 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF--SKLENIGLQTLRLQYNE 285

Query: 310 LR 311
           + 
Sbjct: 286 IE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 42/213 (19%), Positives = 71/213 (33%), Gaps = 54/213 (25%)

Query: 360 KELSLEGMNLSAIPSEIWEAGE-----------ITKLDLSRNSI-----QELPPELSSCA 403
           +      +    +  EI EA             +  + LS N+      + L   LS   
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 404 SLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            L+ L L  N +       I  +L  L+  K              K+ P L+ +    N 
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKA------------KNAPPLRSIICGRNR 170

Query: 462 --------IASLPENPPFSSLPHLQELYLRRMQLR-----EAPTDILRL-QQLRILDLSQ 507
                    A       F S   L  + + +  +R         + L   Q+L++LDL  
Sbjct: 171 LENGSMKEWAKT-----FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 508 NSL-----QSIPEGFKNLTSLTELDLSDNNISA 535
           N+       ++    K+  +L EL L+D  +SA
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 47/343 (13%), Positives = 101/343 (29%), Gaps = 84/343 (24%)

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSNNSLS-----GLPPEIGKM 297
           + + S +    L  + +     ++          +  + LS N++       L   I   
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357
             L     +      ++  +        L+ L   L +                   + +
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEA-----LRLLLQALLKC-------------PKLHTVRL 101

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--------------LPPELSSCA 403
           +             +   + +   +  L L  N +                +  +  +  
Sbjct: 102 SDNAFGPTAQ--EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159

Query: 404 SLQTLILSRNKIKD-----WPDAILTSLSSLSCLKLDNNPLR-----QVPSDGFKDIPML 453
            L+++I  RN++++     W      S   L  +K+  N +R      +  +G      L
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKT-FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 454 QILDLSYN---------IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-------RL 497
           ++LDL  N         +A         S P+L+EL L    L       +         
Sbjct: 219 KVLDLQDNTFTHLGSSALAIA-----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 498 QQLRILDLSQNSL-----QSIPEGFK-NLTSLTELDLSDNNIS 534
             L+ L L  N +     +++       +  L  L+L+ N  S
Sbjct: 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 58/349 (16%), Positives = 102/349 (29%), Gaps = 83/349 (23%)

Query: 209 LIRLDLHQNRI-----LSIPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTL 258
           +    L  + I      S+ + +    S+ E  +  N +       L   +     L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 259 DLHSNQ---LKEYCVEACQL---------RLSVLDLSNNSL-----SGLPPEIGKMTTLR 301
           +        +K+   EA +L         +L  + LS+N+        L   + K T L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361
            L L  N L            P     +   L E   ++ +     L      +      
Sbjct: 126 HLYLHNNGL-----------GPQAGAKIARALQELAVNKKAKNAPPL----RSIICGRNR 170

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE------LPPELSSCASLQTLILSRNKI 415
           L    M              +  + + +N I+       L   L+ C  L+ L L  N  
Sbjct: 171 LENGSM--KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 416 KDWPDAI-----LTSLSSLSCLKLDNNPLRQVPSDGFKDI---------PMLQILDLSYN 461
                +      L S  +L  L L++  L    + G   +           LQ L L YN
Sbjct: 229 TH-LGSSALAIALKSWPNLRELGLNDCLLS---ARGAAAVVDAFSKLENIGLQTLRLQYN 284

Query: 462 ----------IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500
                        + E      +P L  L L   +  E    +  ++++
Sbjct: 285 EIELDAVRTLKTVIDEK-----MPDLLFLELNGNRFSEEDDVVDEIREV 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 47/300 (15%), Positives = 83/300 (27%), Gaps = 71/300 (23%)

Query: 3   RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNI----- 57
             + + +       S+     V +E+ +      +     +   L  + L+ N       
Sbjct: 54  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNAFGPTAQ 111

Query: 58  EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM---------LKSLDVSFNSI 103
           E L + L     L  L + +N L       +  A+ EL +         L+S+    N +
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 104 -----MKIPDEIGSATALVKFDCSSNQLKE------LPSSLGRCLNLSDFKASNNCIT-- 150
                 +      S   L       N ++       L   L  C  L      +N  T  
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 151 ---SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS 207
              +L   L     + +L +    L+      +          A   L N          
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD--------AFSKLEN---------I 274

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            L  L L  N I      +    +L                  K+  L  L+L+ N+  E
Sbjct: 275 GLQTLRLQYNEI-----ELDAVRTLKT------------VIDEKMPDLLFLELNGNRFSE 317

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.9 bits (160), Expect = 8e-12
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 463 ASLPENPP-FSSLPHLQELYLRRMQ-LREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 518
               ++        +L ELY+   Q L+      LR L +LR L + ++ L+ +    F 
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77

Query: 519 NLTSLTELDLSDNNISALPPELVS 542
               L+ L+LS N + +L  + V 
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQ 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.0 bits (155), Expect = 3e-11
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNK-IKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           + L  +R+   +    L    +L  L +   + ++      L  L  L  L +  + LR 
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 482
           V  D F   P L  L+LS+N + SL        L  LQEL L
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWK-TVQGLS-LQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.6 bits (154), Expect = 4e-11
 Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRR 484
           S L C     +               L  L +     +  L        L  L+ L + +
Sbjct: 11  SGLRCT---RDGALDSL-HHLPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVK 65

Query: 485 MQLREAPTDILR-LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531
             LR    D      +L  L+LS N+L+S+        SL EL LS N
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.4 bits (151), Expect = 9e-11
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAE-LGKLSKLGTLDLHSNQLKEYC 269
           L   ++  L     + G  +L E Y+     L  L    L  L +L  L +  + L+   
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--F 70

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           V         RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 46  DLQKLILAHNN-IEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
           +L +L + +   ++ L   DLR L  L  L +  + L  +   A      L  L++SFN+
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 103 IMKIPDEIGSATALVKFDCSSNQL 126
           +  +  +     +L +   S N L
Sbjct: 92  LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 360 KELSLEGMN-LSAIPSE-IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
            EL +E    L  +    +   GE+  L + ++ ++ + P+       L  L LS N ++
Sbjct: 34  TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

Query: 417 DWPDAILTSLSSLSCLKLDNNPLR 440
                 +  L SL  L L  NPL 
Sbjct: 94  SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 29/156 (18%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L                  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE----------------- 48

Query: 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAELGKL 252
                    +  L  L  L + ++ +  +          L+   +  NAL +L  +  + 
Sbjct: 49  ------LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
             L  L L  N L   C  +C LR            
Sbjct: 103 LSLQELVLSGNPLH--C--SCALRWLQRWEEEGLGG 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           LD  +++  ++    +   +L+ L L    +     + L  L  L  L+L  N +     
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD 88

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAP----TDILRLQQ 499
              + +P L  L+LS N +  +    P   L  L+ L L   ++        +    L Q
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148

Query: 500 LRILDLSQNSLQSIPE 515
           L  LD      Q  P+
Sbjct: 149 LTYLDGYDREDQEAPD 164

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
           +V    L     N   I     E   +  L L    +  +   L     L+ L LS N+I
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENRI 83

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPENPP--F 471
               D +   L +L+ L L  N L+ + + +  K +  L+ LDL    + +L +     F
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143

Query: 472 SSLPHLQELYLRRMQLREAP 491
             LP L  L     + +EAP
Sbjct: 144 KLLPQLTYLDGYDREDQEAP 163

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 11/159 (6%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ 441
           + +D+ R    EL     + A+++ L+L   K  D   + +     +L  L L N  L  
Sbjct: 6   SGMDMKRRIHLEL--RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS 63

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILR-LQQ 499
           V       +P L+ L+LS N      +     LP+L  L L   +L++  T + L+ L+ 
Sbjct: 64  V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121

Query: 500 LRILDLSQNSLQSIPE----GFKNLTSLTELDLSDNNIS 534
           L+ LDL    + ++ +     FK L  LT LD  D    
Sbjct: 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 2/86 (2%)

Query: 456 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           +D+   I     N   +++  L  L   +    +          L  L L    L S+  
Sbjct: 8   MDMKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S 65

Query: 516 GFKNLTSLTELDLSDNNISALPPELV 541
               L  L +L+LS+N I      L 
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLA 91

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L    +N  K++        L  L++ +  L  + + + +L  LK L++S N I    D 
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDM 89

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N+LK++ +   L +   L      N  +T+L +
Sbjct: 90  LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
           V+L+ L L +  +  +  +L  LP L  L +S N++      + E L  L  L++S N +
Sbjct: 49  VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 104 MKIPD 108
             I  
Sbjct: 108 KDIST 112

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP 514
           +LD   +     E    +   +L+ L L  + L    +++ +L +L+ L+LS+N +    
Sbjct: 30  VLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 515 EG-FKNLTSLTELDLSDNNISAL 536
           +   + L +LT L+LS N +  +
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D   +   ++       +NL      N  + S+  +L    K+ KL++  N++    + L
Sbjct: 32  DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML 90

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N L  +     +  L  L  LDL    + ++ 
Sbjct: 91  AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 28/127 (22%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
             +    +    A+   +  L +    L  +SN                         + 
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-------------------------LP 68

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L +L +L+L +NRI      ++    +L    +  N L  +     L KL  L +LDL 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 262 SNQLKEY 268
           + ++   
Sbjct: 129 NCEVTNL 135

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 24/162 (14%)

Query: 346 EDLITMATRLS--VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCA 403
            +LI  A + +  V  +EL L G  +  I +      +   +D S N I++L        
Sbjct: 6   AELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLR 64

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNI 462
            L+TL+++ N+I    + +  +L  L+ L L NN L ++   D    +  L  L +  N 
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN- 123

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 504
                  P ++  H    Y   +        I ++ Q+R+LD
Sbjct: 124 -------PVTNKKH----YRLYV--------IYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 12/157 (7%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           + L+   I++   + ++    + L L   KI    + +  +L     +   +N +R++  
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-- 57

Query: 445 DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ---LR 501
           DGF  +  L+ L ++ N           +LP L EL L    L E   D+  L     L 
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLT 116

Query: 502 ILDLSQNSLQSIPE----GFKNLTSLTELDLSDNNIS 534
            L + +N + +           +  +  LD     + 
Sbjct: 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 4   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FP 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPE--DLADCSKMSKLDVE 168
               L     ++N++  +   L + L +L++   +NN +  L +   LA    ++ L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 169 GNKLTVLSN 177
            N +T   +
Sbjct: 122 RNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +  R   LDL   +I  I +  +           +N +  L      L +L TL +++N+
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR 75

Query: 265 LK---EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
           +    E   +A    L+ L L+NNSL  L     +  + +L  L +  NP+
Sbjct: 76  ICRIGEGLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
           +   I    +   +  +  +LD+ G K+ V+ N L A+      +  S N +  + +   
Sbjct: 5   TAELIEQAAQ-YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFP 61

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L RL  L ++ NRI  I   +      L E  + NN+L  L     L  L  L  L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 262 SN 263
            N
Sbjct: 122 RN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             AV  ++L L    I  ++     L     ++ S N++ +L      L  LK+L V+ N
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN 74

Query: 102 SIMKIPDEIGSA-TALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
            I +I + +  A   L +   ++N L EL     L    +L+      N +T+   
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP 514
           ++ L+  +  + +   +++    +EL LR  ++         L Q   +D S N ++ + 
Sbjct: 1   MVKLTAEL--IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL- 57

Query: 515 EGFKNLTSLTELDLSDNNISALPPEL 540
           +GF  L  L  L +++N I  +   L
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGL 83

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 491
           +KL    + Q  +  + +    + LDL      + EN   ++L     +     ++R+  
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL- 57

Query: 492 TDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISAL 536
                L++L+ L ++ N +  I EG  + L  LTEL L++N++  L
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + ++   I +   +  +A    + D    ++  + +             S+N I  L + 
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG 59

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLD 213
                ++  L V  N++  +   L  +   LTELI + N L  + +   + SL  L  L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 214 LHQNRILSIP 223
           + +N + +  
Sbjct: 120 ILRNPVTNKK 129

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 57.3 bits (137), Expect = 5e-09
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 19/176 (10%)

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
           W   +  + ++S     +L P L +   L  L +              +L SL  +    
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE-IISGG 204

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYN---------IASLPENPPFSSLPHLQELYLRRMQL 487
            P   V      D+P L+ L L            +            P+L+ L +   + 
Sbjct: 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264

Query: 488 REAPTDIL----RLQQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS 534
           +    ++      L QL  +D+S   L     + + +    +  L  +++  N +S
Sbjct: 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 25/249 (10%), Positives = 66/249 (26%), Gaps = 46/249 (18%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              ++         +             +S  +  +L   +  + +L +L +   + + I
Sbjct: 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                              LK L         +      ++ +  +    +D   + KL 
Sbjct: 188 GK------------KPRPNLKSL--------EIISGGLPDSVVEDILG--SDLPNLEKLV 225

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP--- 223
           +         +  +  +  L                      L  L +      ++    
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSK--------------DRFPNLKWLGIVDAEEQNVVVEM 271

Query: 224 -SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277
                    L    +    L+      L   + K+  L  +++  N L +   +  Q  L
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331

Query: 278 SV-LDLSNN 285
            + +D+S++
Sbjct: 332 PMKIDVSDS 340

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 37/191 (19%), Positives = 65/191 (34%), Gaps = 42/191 (21%)

Query: 382 ITKLDLSRNSIQE-----LPPELSSC-ASLQTLILSRNKIKDWP-----DAILTSLSSLS 430
           IT LDL  N              S+  AS+ +L L  N +           +    ++++
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170

Query: 431 CLKLDNNPLR----QVPSDGFKDIP-MLQILDLSYN---------IASLPENPPFSSLPH 476
            L L  N L        +     IP  +  LDLS N         +A +  + P     H
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP----NH 226

Query: 477 LQELYLRRMQLREAPTDIL-----RLQQLRILDLSQNSL--------QSIPEGFKNLTSL 523
           +  L L    L     + L      L+ L+ + L  + +        +++   F N+  +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 524 TELDLSDNNIS 534
             +D +   I 
Sbjct: 287 ILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 65/401 (16%), Positives = 118/401 (29%), Gaps = 101/401 (25%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM-LKSLDVSFNSIMKIPDEIGSA 113
           ++E       +T L++S N L       L  A       + SL++S NS+        ++
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-----NS 68

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKL 172
             LV+       L  +P+++   LNLS    S      L + LA     ++ LD+  N  
Sbjct: 69  DELVQI------LAAIPANV-TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 173 T-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--------LIRLDLHQNRI 219
           +                 +T L    N L    ++   L +        +  L+L  N +
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNNL 179

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA------- 272
                +   C  LA+F                 + + +LDL +N L              
Sbjct: 180 -----ASKNCAELAKFLASIP------------ASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 273 CQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
               +  L+L  N L G     L      +  L+ + L  + +           +    K
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV--------KNMSKEQCK 274

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-----GEI 382
            L +  P                    +    KE+             I        G+ 
Sbjct: 275 ALGAAFPNI-------------QKIILVDKNGKEIHPSHSIP------ISNLIRELSGKA 315

Query: 383 TKLDLSRNSI------QELPPELSSCASLQTLILSRNKIKD 417
               L    +      Q    +L+    L+  I +   + +
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLE 356

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 64/375 (17%), Positives = 121/375 (32%), Gaps = 78/375 (20%)

Query: 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL 260
           E       +  LDL  N +            L + +                + + +L+L
Sbjct: 16  EFTSIPHGVTSLDLSLNNL-----YSISTVELIQAFANTP------------ASVTSLNL 58

Query: 261 HSNQLKEYCVEA-------CQLRLSVLDLSNNSLS--GLPPEIGKM-----TTLRKLLLT 306
             N L     +            ++ L+LS N LS      E+ K       T+  L L 
Sbjct: 59  SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD-ELVKTLAAIPFTITVLDLG 117

Query: 307 GNPL-----RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361
            N          + +  N P    +  L   L  N+    S+  ++LI +   +      
Sbjct: 118 WNDFSSKSSSEFKQAFSNLPAS--ITSLN--LRGNDLGIKSS--DELIQILAAIPANVNS 171

Query: 362 LSLEGMNLSAIP-SEIWEAGE-----ITKLDLSRNSI-----QELPPELSSC-ASLQTLI 409
           L+L G NL++   +E+ +        +T LDLS N +      EL    SS    + +L 
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 410 LSRNKIKDWP----DAILTSLSSLSCLKLDNNPLRQVPSDGFKDI-------PMLQILDL 458
           L  N +          +  SL  L  + LD + ++ +  +  K +         + ++D 
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFK 518
           +            S    +  L +R +  +    D+  L    ++   ++      E   
Sbjct: 292 NGK------EIHPSHSIPISNL-IRELSGK---ADVPSLLNQCLIFAQKHQTNI--EDLN 339

Query: 519 NLTSLTELDLSDNNI 533
               L E   +   +
Sbjct: 340 IPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 54/288 (18%), Positives = 101/288 (35%), Gaps = 60/288 (20%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPL-LTVLNVSHNKLSE-----LPAAIGELH-MLK 94
           +  L L+ NN+      +L +   N P  +T LN+S N L       L   +  +   + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           SL++S N +        S+  LVK       L  +P ++   L+L     S+   +   +
Sbjct: 84  SLNLSGNFL-----SYKSSDELVKT------LAAIPFTI-TVLDLGWNDFSSKSSSEFKQ 131

Query: 155 DLADC-SKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR 208
             ++  + ++ L++ GN L       L   L A    +  L    N L    +    L++
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA--SKNCAELAK 189

Query: 209 --------LIRLDLHQNRI-----LSIPSSISGC-CSLAEFYMGNNALS-----ALPAEL 249
                   +  LDL  N +       +    S     +    +  N L       L    
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL---------RLSVLDLSNNSLS 288
             L  L T+ L  + +K    E C+          ++ ++D +   + 
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 40/194 (20%)

Query: 382 ITKLDLSRNSI-----QELPPELSSC-ASLQTLILSRNKI-----KDWPDAILTSLSSLS 430
           +T L+LS N +      EL   L++   ++  L L  N        ++  A     +S++
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 431 CLKLDNNPLR----QVPSDGFKDIPM-LQILDLSYN---------IASLPENPPFSSLPH 476
            L L  N L              IP  +  L+L  N         +A    + P      
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP----AS 197

Query: 477 LQELYLRRMQLREAPTDIL------RLQQLRILDLSQNSL-----QSIPEGFKNLTSLTE 525
           +  L L    L       L          +  L+L  N L     +++     +L  L  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 526 LDLSDNNISALPPE 539
           + L  + +  +  E
Sbjct: 258 VYLDYDIVKNMSKE 271

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK- 266
           + + LD  ++    +         L      N  L+++ A L KL+KL  L+L  N++  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG 78

Query: 267 --EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
             E   E C   L+ L+LS N +  L     + K+  L+ L L    +
Sbjct: 79  GLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 24/148 (16%)

Query: 360 KELSLEGMNLSAIPSE--IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           KEL L+    +    E    E  E+  L      +  +   L     L+ L LS N++  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVSG 78

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPH 476
             + +     +L+ L L  N ++ + + +  K +  L+ LDL             ++L  
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC--------EVTNLND 130

Query: 477 LQELYLRRMQLREAPTDILRLQQLRILD 504
               Y   +           L QL  LD
Sbjct: 131 ----YRENV--------FKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 11/135 (8%)

Query: 401 SCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
           + + ++ L+L  ++  +   + +      L  L   N  L  +       +  L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ---LRILDLSQNSLQSIPE- 515
            N  S          P+L  L L   ++++  + I  L++   L+ LDL    + ++ + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNCEVTNLNDY 131

Query: 516 ---GFKNLTSLTELD 527
               FK L  LT LD
Sbjct: 132 RENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 8/121 (6%)

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
              + S +  L LDN+   +   +G   +   L+ L      + S+        L  L++
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKK 68

Query: 480 LYLRRMQL-REAPTDILRLQQLRILDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISAL 536
           L L   ++         +   L  L+LS N ++ +      K L +L  LDL +  ++ L
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

Query: 537 P 537
            
Sbjct: 129 N 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 473 SLPHLQELYL--RRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD 530
           +   ++EL L   R    +        ++L  L      L SI      L  L +L+LSD
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73

Query: 531 NNISALPPEL 540
           N +S     L
Sbjct: 74  NRVSGGLEVL 83

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
            +L+ L   +  +  +  +L  L  L  L +S N++S     + E    L  L++S N I
Sbjct: 42  EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 104 MKIPD 108
             +  
Sbjct: 101 KDLST 105

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L  + +N  KL+        L  L+  +  L+ + A + +L+ LK L++S N +    + 
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N++K+L +   L +  NL      N  +T+L +
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D S +   +L         L      N  +TS+  +L   +K+ KL++  N+++     L
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N +  +     +  L  L  LDL    + ++ 
Sbjct: 84  AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 78/522 (14%), Positives = 149/522 (28%), Gaps = 80/522 (15%)

Query: 40  KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-----LHMLK 94
                    +L     N+  L   L+  P   + N+                   L  LK
Sbjct: 58  ALCYTATPDRLSRRFPNLRSL--KLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           S+       M + D       L K       L+ L   L +C   +           L  
Sbjct: 116 SVHFRR---MIVSDL--DLDRLAKARADD--LETL--KLDKCSGFTT--------DGLLS 158

Query: 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDL 214
            +  C K+  L +E +  +      +     L +   S  +LN               + 
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHE---LAQHNTSLEVLN-----------FYMTEF 204

Query: 215 HQNRILSIPSSISGCCSLAEFYMGNNA---LSALPAELGKLSKLGTLDLHSNQLKEYCVE 271
            +     + +    C SL    +G+     L         L +     L+ +        
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264

Query: 272 ACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
                 +L  L LS    + +P        +RKL L    L T     +    P L + L
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL-EVL 323

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389
            +R              ++I       +      L+ + +     E  +  E  +  +S+
Sbjct: 324 ETR--------------NVIGDRGLEVLAQYCKQLKRLRIERGADE--QGMEDEEGLVSQ 367

Query: 390 NSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDN-----NPLRQVP 443
             +  L      C  L+ + +  + I +   ++I T L +L   +L              
Sbjct: 368 RGLIAL---AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424

Query: 444 SDGFKDI----PMLQILDLSYNIASLPENPPF---SSLPHLQELYLRRMQLR-EAPTDIL 495
            +G + +      L+          L +          P+++ + L  +    E   +  
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484

Query: 496 R-LQQLRILDLSQNSL--QSIPEGFKNLTSLTELDLSDNNIS 534
           R    L+ L++       ++I      L SL  L +     S
Sbjct: 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 500 LRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
              L L+ N+L ++P G    L +L    L  N
Sbjct: 33  TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 79/534 (14%), Positives = 162/534 (30%), Gaps = 104/534 (19%)

Query: 40  KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLK 94
               AV    +I     +  +  +L+  P     N+  +         + A       L+
Sbjct: 51  GNCYAVSPATVIRRFPKVRSV--ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
            + +     M + D+      L     S    K L   L  C   S           L  
Sbjct: 109 EIRLKR---MVVTDD-----CLELIAKSFKNFKVL--VLSSCEGFST--------DGLAA 150

Query: 155 DLADCSKMSKLDVEGNKLTVLSNNLIA----SWTMLTELIASKNLLNGMPETIGSLSR-- 208
             A C  + +LD+  + +  +S + ++    ++T L  L  S          +  L    
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210

Query: 209 --LIRLDLHQNRILS-IPSSISGCCSLAEFYMG-------NNALSALPAELGKLSKLGTL 258
             L  L L++   L  + + +     L E   G        +  S L   L    +L  L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 259 DLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSS 316
               + +  Y      +  RL+ L+LS  ++            L KLL     L+ L   
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ--------SYDLVKLLCQCPKLQRL--W 320

Query: 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI 376
           +++    A L+ L S   +                        +EL +       +   +
Sbjct: 321 VLDYIEDAGLEVLASTCKDL-----------------------RELRVFPSEPFVMEPNV 357

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKL- 434
                     L+   +  +      C  L++++    ++ +     I  +  +++  +L 
Sbjct: 358 ---------ALTEQGLVSV---SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 435 ------DNNPLRQVPSDGFKDI----PMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                  +    +    GF  I      L+ L LS  +         +    ++ L +  
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

Query: 485 MQLR-EAPTDILR-LQQLRILDLSQNSL--QSIPEGFKNLTSLTELDLSDNNIS 534
                     +L     LR L++       +++      L ++  L +S  ++S
Sbjct: 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 28/197 (14%), Positives = 53/197 (26%), Gaps = 45/197 (22%)

Query: 382 ITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDW-PDAI---LTSLSSLSCL 432
           IT L LS N +       L   L+   S+  L L    + D   + +   L     L  L
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216

Query: 433 KLDNNPLR----QVPSDGFKDIPMLQILDLSYN---------IASLPENPPFSSLPHLQE 479
            +  N          +   ++ P L++L L +N         +  L           +  
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAA--EGGARVVV 274

Query: 480 LYLRRMQLREA----------------PTDILRLQQLRILDLSQNSL-----QSIPEGFK 518
                  + E                    + R  +L + DL  +           +  +
Sbjct: 275 SLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLR 334

Query: 519 NLTSLTELDLSDNNISA 535
               +  L     +  +
Sbjct: 335 VEGEVRALLEQLGSSGS 351

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 381 EITKLDLSRN---SIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC--LKLD 435
           E+  L+LS N    + ++   +    +L+ L LS N++K   +  L  +  L    L LD
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLD 228

Query: 436 NNPLRQVPSDG-------FKDIPMLQILD 457
            N L     D         +  P L  LD
Sbjct: 229 GNSLCDTFRDQSTYISAIRERFPKLLRLD 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	543
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.81
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.15
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.14
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.01
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.94
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	93.17
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	92.01

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.1e-49  Score=408.24  Aligned_cols=473  Identities=20%  Similarity=0.257  Sum_probs=385.0

Q ss_pred             cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCcCccc-chhhh
Q 009119           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIG   88 (543)
Q Consensus        11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~   88 (543)
                      -++++|++.+++++|..+.               +.+++|++++|.++.+ +..|+++++|++|++++|.+..+ |.+|.
T Consensus        14 ~~~~~c~~~~l~~iP~~l~---------------~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   78 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLP---------------NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ   78 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC---------------TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred             CceEECCCCCcccCcCCCC---------------CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc
Confidence            3579999999999998884               4589999999999988 56899999999999999998866 66899


Q ss_pred             ccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCcccc-cccccCCCCCCEEEccCCcCccCC-cccccCCCccEE
Q 009119           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKL  165 (543)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L  165 (543)
                      ++++|++|++++|.+..+ |..+.++++|++|++++|.++.+ +..+.++++|++|++++|.+..++ ..+..+++|++|
T Consensus        79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  158 (606)
T 3t6q_A           79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL  158 (606)
T ss_dssp             TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred             CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence            999999999999998854 67899999999999999999977 577889999999999999998752 345559999999


Q ss_pred             EecCCcccccchhhhccccccc--EEECCCCcCCcCchhccCCC------------------------------------
Q 009119          166 DVEGNKLTVLSNNLIASWTMLT--ELIASKNLLNGMPETIGSLS------------------------------------  207 (543)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~l~~~~------------------------------------  207 (543)
                      ++++|.+..+....+..+++|+  ++++++|.+..++.......                                    
T Consensus       159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~  238 (606)
T 3t6q_A          159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM  238 (606)
T ss_dssp             ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred             EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence            9999999988888899999999  88999998876554332222                                    


Q ss_pred             ----------------cccEEEccCCccccCCC-CCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccch
Q 009119          208 ----------------RLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV  270 (543)
Q Consensus       208 ----------------~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~  270 (543)
                                      +++.+++++|.+..++. .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+..
T Consensus       239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~  318 (606)
T 3t6q_A          239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ  318 (606)
T ss_dssp             CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred             cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch
Confidence                            56677777777776654 3777888888888888888888888888888888888888876644


Q ss_pred             hhh--cceecEEEccCCCCCC-CCh-hhcCCCCCceeecCCCCcCccc--ccccCCCcHHHHHHHhccCCCCcccccccc
Q 009119          271 EAC--QLRLSVLDLSNNSLSG-LPP-EIGKMTTLRKLLLTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTT  344 (543)
Q Consensus       271 ~~~--~~~L~~L~l~~~~i~~-~~~-~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (543)
                      ..+  ...|++|++++|.+.. ++. .+..+++|++|++++|.+....  ...+                          
T Consensus       319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------  372 (606)
T 3t6q_A          319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--------------------------  372 (606)
T ss_dssp             GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--------------------------
T ss_pred             hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc--------------------------
Confidence            332  2348888888887764 443 3778888888888888776543  1111                          


Q ss_pred             hhhHHHhhhhcccccceeeeCCCCCCCC-ChhhhccCCccEEEcCCCcCccC-C-hhhccCCCCceeecccCcCCCCCHH
Q 009119          345 KEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQEL-P-PELSSCASLQTLILSRNKIKDWPDA  421 (543)
Q Consensus       345 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-~-~~~~~~~~L~~L~l~~~~i~~~~~~  421 (543)
                               ...++++++++++|.+..+ +..+..+++|++|++++|.++.. + ..+..+++|+.|++++|.++...+.
T Consensus       373 ---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  443 (606)
T 3t6q_A          373 ---------RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ  443 (606)
T ss_dssp             ---------TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred             ---------ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence                     1236789999999988754 55677789999999999998764 3 3478899999999999999988888


Q ss_pred             HhhCCCCCCEEEcCCCCCccc---CCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCcccc-Cchhhhcc
Q 009119          422 ILTSLSSLSCLKLDNNPLRQV---PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRL  497 (543)
Q Consensus       422 ~l~~~~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~  497 (543)
                      .+.++++|++|++++|++.+.   ....+..+++|++|++++|.+....+.+|..+++|++|++++|+++. .|..+..+
T Consensus       444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  523 (606)
T 3t6q_A          444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL  523 (606)
T ss_dssp             TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred             HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence            888999999999999998762   22458889999999999999988888889999999999999999884 45678889


Q ss_pred             CCCcEEeCCCCccccc-cccccCCCCCCeEeCCCCcCC
Q 009119          498 QQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS  534 (543)
Q Consensus       498 ~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~  534 (543)
                      +.| .|++++|+++.+ |..+..+++|+.|++++|++.
T Consensus       524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred             ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence            999 999999999877 566888999999999999886

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.3e-50  Score=415.61  Aligned_cols=472  Identities=21%  Similarity=0.219  Sum_probs=376.3

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhhhc
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~   89 (543)
                      ++++|++++++++|.++.               +++++|++++|.+..++ ..|+++++|++|++++|.+..+ |.+|.+
T Consensus        14 ~~~~c~~~~l~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~   78 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDIP---------------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG   78 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CceEccCCCcccCCCCCC---------------CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc
Confidence            579999999999998874               46999999999999886 4899999999999999999977 558999


Q ss_pred             cCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCc--cCCcccccCCCccEE
Q 009119           90 LHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSKL  165 (543)
Q Consensus        90 ~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~i~~~~~~~~~L~~L  165 (543)
                      +++|++|++++|.+..+ |..+.++++|++|++++|.+..++ ..+.++++|++|++++|.+.  .+|..+..+++|++|
T Consensus        79 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A           79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred             hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence            99999999999999876 778999999999999999998776 67899999999999999998  478889999999999


Q ss_pred             EecCCcccccchhhhccccccc----EEECCCCcCCcCchhccCCCcccEEEccCCccc--cCCC---------------
Q 009119          166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPS---------------  224 (543)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~---------------  224 (543)
                      ++++|.+..+....++.+.+|+    ++++++|.+..++.......+|+.|++++|.+.  ..+.               
T Consensus       159 ~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~  238 (606)
T 3vq2_A          159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL  238 (606)
T ss_dssp             ECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred             EccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence            9999999988777677776655    899999999888776656668999999888653  1111               


Q ss_pred             -----------------------------------------CCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCC
Q 009119          225 -----------------------------------------SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (543)
Q Consensus       225 -----------------------------------------~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n  263 (543)
                                                               .+..+++|+.++++++.+..+| .+..+++|++|++++|
T Consensus       239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n  317 (606)
T 3vq2_A          239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC  317 (606)
T ss_dssp             ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESC
T ss_pred             cccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccc
Confidence                                                     1344566666666666666665 5666666777777666


Q ss_pred             cccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCccccccc
Q 009119          264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST  343 (543)
Q Consensus       264 ~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (543)
                      .+..++.. ....|+++++++|..... ..+..+++|++|++++|.+.....                            
T Consensus       318 ~l~~lp~~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~----------------------------  367 (606)
T 3vq2_A          318 QLKQFPTL-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALSFSGC----------------------------  367 (606)
T ss_dssp             CCSSCCCC-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSSCEEEEEE----------------------------
T ss_pred             cCcccccC-CCCccceeeccCCcCccc-hhhccCCCCCEEECcCCccCCCcc----------------------------
Confidence            66655533 333466677666633321 134566667777777666543310                            


Q ss_pred             chhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCC--hhhccCCCCceeecccCcCCCCCHH
Q 009119          344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDA  421 (543)
Q Consensus       344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~i~~~~~~  421 (543)
                           ........+.++++++++|.+..++..+..+++|++|++++|.+..++  ..+..+++|+.|++++|.+++..+.
T Consensus       368 -----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          368 -----CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             -----CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             -----hhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence                 001112346788999999988888877888899999999999888754  3678889999999999998888777


Q ss_pred             HhhCCCCCCEEEcCCCCCcc-cCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCC
Q 009119          422 ILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQ  499 (543)
Q Consensus       422 ~l~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~  499 (543)
                      .+.++++|++|++++|.+.+ .....+..+++|++|++++|.+....+..+..+++|++|++++|+++.+ |..+..+++
T Consensus       443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  522 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS  522 (606)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred             hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence            78889999999999998886 4556688899999999999998888778888999999999999988865 677888899


Q ss_pred             CcEEeCCCCccccccccccCCC-CCCeEeCCCCcCC
Q 009119          500 LRILDLSQNSLQSIPEGFKNLT-SLTELDLSDNNIS  534 (543)
Q Consensus       500 L~~L~l~~~~l~~l~~~l~~~~-~L~~L~l~~~~~~  534 (543)
                      |++|++++|+++.+|..+..++ +|+.|++++|++.
T Consensus       523 L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          523 LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             CCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred             CCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence            9999999999998887788887 5999999999887

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-49  Score=419.93  Aligned_cols=509  Identities=29%  Similarity=0.328  Sum_probs=329.8

Q ss_pred             HHHHHhhcCeeecCCCccc-ccchhhhhcccccCCCCccccccCccEEEcCccccccch-HH---hcCCCCCCEEEcCCC
Q 009119            4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-ED---LRNLPLLTVLNVSHN   78 (543)
Q Consensus         4 ~~~~~~~~~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~---~~~~~~L~~L~l~~~   78 (543)
                      .+...+++++|+++++.+. .+|...+..            +++|++|++++|.+.... ..   +.++++|++|++++|
T Consensus       121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLK------------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEECCSSCCSCCC------------CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             HHhCCCCCCEEECcCCccCCcCCHHHhcc------------CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence            4566788999999999887 444443232            566777777777776443 33   667777777777777


Q ss_pred             cCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcc-cccccccCCCCCCEEEccCCcCccCCcccc
Q 009119           79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLA  157 (543)
Q Consensus        79 ~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~  157 (543)
                      .+.... .+..+++|++|++++|.+....+.+..+++|++|++++|.++ .+|..+..+++|++|++++|.+....... 
T Consensus       189 ~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-  266 (768)
T 3rgz_A          189 KISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-  266 (768)
T ss_dssp             EEESCC-BCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-
T ss_pred             cccccC-CcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-
Confidence            665332 225666777777777766643333666677777777776666 44556666666666666666665322122 


Q ss_pred             cCCCccEEEecCCccc-ccchhhhcccccccEEECCCCcCC-cCchhccCCCcccEEEccCCccc-cCCCC-CcCCCCCc
Q 009119          158 DCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSS-ISGCCSLA  233 (543)
Q Consensus       158 ~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~-~~~~~~L~  233 (543)
                      .+++|++|++++|.+. .++......+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|.. +..+++|+
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~  346 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK  346 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence            5566666666666555 333322222355666666666554 44555555666666666666555 44433 45556666


Q ss_pred             EEEcCCCCCC-CCCccccCCC-CCCEEeCCCCcccc-cchhhh---cceecEEEccCCCCCC-CChhhcCCCCCceeecC
Q 009119          234 EFYMGNNALS-ALPAELGKLS-KLGTLDLHSNQLKE-YCVEAC---QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLT  306 (543)
Q Consensus       234 ~l~l~~~~l~-~l~~~l~~~~-~L~~L~l~~n~l~~-~~~~~~---~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~  306 (543)
                      +|++++|.+. .+|..+..++ +|++|++++|.+.. ++....   ...|++|++++|.+++ +|..+.++++|++|+++
T Consensus       347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  426 (768)
T 3rgz_A          347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS  426 (768)
T ss_dssp             EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred             EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence            6666666555 4555555554 55555555555542 111111   1235555555555553 44555555555555555


Q ss_pred             CCCcCcccccccCCCcHHHHHHHhc-cCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCC-CCChhhhccCCccE
Q 009119          307 GNPLRTLRSSLVNGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITK  384 (543)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~  384 (543)
                      +|.+.......+....     .+.. .+.......  .     ........++++++++++|.+. .+|..+..+++|++
T Consensus       427 ~N~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~--~-----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  494 (768)
T 3rgz_A          427 FNYLSGTIPSSLGSLS-----KLRDLKLWLNMLEG--E-----IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW  494 (768)
T ss_dssp             SSEEESCCCGGGGGCT-----TCCEEECCSSCCCS--C-----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             CCcccCcccHHHhcCC-----CCCEEECCCCcccC--c-----CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence            5554422211111000     0000 000000000  0     0011123467889999999888 67888888899999


Q ss_pred             EEcCCCcCcc-CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcc-cCC------------------
Q 009119          385 LDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ-VPS------------------  444 (543)
Q Consensus       385 L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~------------------  444 (543)
                      |++++|.++. +|.++..+++|++|++++|++++..+..+.++++|+.|++++|++.+ ++.                  
T Consensus       495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~  574 (768)
T 3rgz_A          495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR  574 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred             EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence            9999999884 78888899999999999999987777778899999999999987752 221                  


Q ss_pred             ---------------------------------------------------CccCCCCCccEEEccCCcCCCCCCCCCCC
Q 009119          445 ---------------------------------------------------DGFKDIPMLQILDLSYNIASLPENPPFSS  473 (543)
Q Consensus       445 ---------------------------------------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  473 (543)
                                                                         ..+..+++|+.||+++|.+++..+..++.
T Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  654 (768)
T 3rgz_A          575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS  654 (768)
T ss_dssp             EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence                                                               12344678999999999999888999999


Q ss_pred             CCcCceeecCCCccc-cCchhhhccCCCcEEeCCCCccc-cccccccCCCCCCeEeCCCCcCC-cCCC
Q 009119          474 LPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPP  538 (543)
Q Consensus       474 ~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~~~-~~~~  538 (543)
                      +++|+.|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.
T Consensus       655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            999999999999998 78999999999999999999998 66999999999999999999987 5664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.6e-50  Score=421.42  Aligned_cols=510  Identities=26%  Similarity=0.326  Sum_probs=413.0

Q ss_pred             HHHHhhcCeeecCCCccc-ccch--hhhhcccccCCCCccccccCccEEEcCccccc-cchHH-hcCCCCCCEEEcCCCc
Q 009119            5 LKAARTSGSLNLSNRSLR-DVPN--EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKED-LRNLPLLTVLNVSHNK   79 (543)
Q Consensus         5 ~~~~~~~~~l~l~~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~~L~l~~~~   79 (543)
                      +...+.+++||++++.+. .+|.  .+             ..+++|++|++++|.+. .++.. +.++++|++|++++|.
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l-------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  162 (768)
T 3rgz_A           96 FKCSASLTSLDLSRNSLSGPVTTLTSL-------------GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS  162 (768)
T ss_dssp             CCCCTTCCEEECCSSEEEEEGGGGGGG-------------GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred             hccCCCCCEEECCCCcCCCcCCChHHH-------------hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence            345678999999999988 4554  33             23789999999999887 34444 4899999999999999


Q ss_pred             Cccc-chh---hhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCc-cCCc
Q 009119           80 LSEL-PAA---IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPE  154 (543)
Q Consensus        80 l~~~-~~~---~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~i~~  154 (543)
                      +... +..   +.++++|++|++++|.+..... +..+++|++|++++|.+...+..+.++++|++|++++|.+. .++.
T Consensus       163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  241 (768)
T 3rgz_A          163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR  241 (768)
T ss_dssp             CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred             cCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence            9855 334   7899999999999999885433 37899999999999999865445999999999999999998 5678


Q ss_pred             ccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCC-cCchhccCC-CcccEEEccCCccc-cCCCCCcCCCC
Q 009119          155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL-SRLIRLDLHQNRIL-SIPSSISGCCS  231 (543)
Q Consensus       155 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~-~~L~~L~l~~~~~~-~~~~~~~~~~~  231 (543)
                      .+..+++|++|++++|.+......  ..+++|++|++++|.+. .+|..+... ++|+.|++++|.+. .+|..+..+++
T Consensus       242 ~l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  319 (768)
T 3rgz_A          242 AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL  319 (768)
T ss_dssp             HTTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred             HHhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence            899999999999999988744332  27889999999999996 778777664 99999999999988 67788999999


Q ss_pred             CcEEEcCCCCCC-CCCcc-ccCCCCCCEEeCCCCccc-ccchhhhc--ceecEEEccCCCCCC-CChhhcC--CCCCcee
Q 009119          232 LAEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLK-EYCVEACQ--LRLSVLDLSNNSLSG-LPPEIGK--MTTLRKL  303 (543)
Q Consensus       232 L~~l~l~~~~l~-~l~~~-l~~~~~L~~L~l~~n~l~-~~~~~~~~--~~L~~L~l~~~~i~~-~~~~l~~--~~~L~~L  303 (543)
                      |++|++++|.+. .+|.. +..+++|++|++++|.+. .++.....  ..|++|++++|.+.+ ++..+..  +++|++|
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence            999999999998 78865 899999999999999987 45544433  269999999999886 6666665  7899999


Q ss_pred             ecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCC-CCChhhhccCCc
Q 009119          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEI  382 (543)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L  382 (543)
                      ++++|.+.......+....         .+...+.....  ............++++.+++++|.+. .+|..+..+++|
T Consensus       400 ~L~~n~l~~~~p~~l~~l~---------~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  468 (768)
T 3rgz_A          400 YLQNNGFTGKIPPTLSNCS---------ELVSLHLSFNY--LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL  468 (768)
T ss_dssp             ECCSSEEEEECCGGGGGCT---------TCCEEECCSSE--EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             ECCCCccccccCHHHhcCC---------CCCEEECcCCc--ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence            9999988743322221100         01110000000  00001111223468999999999988 788889999999


Q ss_pred             cEEEcCCCcCcc-CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCC
Q 009119          383 TKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (543)
Q Consensus       383 ~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  461 (543)
                      ++|++++|.++. +|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.....+..+++|+.|++++|
T Consensus       469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            999999999985 7888999999999999999999888888899999999999999999766677999999999999999


Q ss_pred             cCCCCCC----------------------------------------------------------------------CCC
Q 009119          462 IASLPEN----------------------------------------------------------------------PPF  471 (543)
Q Consensus       462 ~~~~~~~----------------------------------------------------------------------~~~  471 (543)
                      .+.+..+                                                                      ..+
T Consensus       549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            7653222                                                                      134


Q ss_pred             CCCCcCceeecCCCccc-cCchhhhccCCCcEEeCCCCccc-cccccccCCCCCCeEeCCCCcCC-cCCCCcC
Q 009119          472 SSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELV  541 (543)
Q Consensus       472 ~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~~~-~~~~~~~  541 (543)
                      ..+++|++|++++|+++ .+|..+..++.|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|+.+.
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence            55688999999999998 78999999999999999999998 67999999999999999999999 6776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2e-47  Score=400.05  Aligned_cols=504  Identities=23%  Similarity=0.304  Sum_probs=275.8

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhhhc
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~   89 (543)
                      +.+||++++++++|..+.               +++++|++++|.+..++ ..|+++++|++|++++|.+..+ |.+|.+
T Consensus         7 ~~~~cs~~~L~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   71 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP---------------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK   71 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC---------------TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH
T ss_pred             CeeECCCCCccccccccC---------------CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc
Confidence            467888888888887663               34666666666666554 3566666666666666666644 446666


Q ss_pred             cCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCccC-CcccccCCCccEEE
Q 009119           90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLD  166 (543)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~L~  166 (543)
                      +++|++|++++|.+..+|. .+.++++|++|++++|.+..++ ..+.++++|++|++++|.+... +..+..+++|++|+
T Consensus        72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  151 (680)
T 1ziw_A           72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL  151 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred             ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence            6666666666666666654 4666666666666666666554 4566666666666666666543 34455666666666


Q ss_pred             ecCCcccccchhhhc--ccccccEEECCCCcCCcCch-hccCC---------------------------CcccEEEccC
Q 009119          167 VEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMPE-TIGSL---------------------------SRLIRLDLHQ  216 (543)
Q Consensus       167 l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-~l~~~---------------------------~~L~~L~l~~  216 (543)
                      +++|.+..+....+.  .+++|++|++++|.+..++. .+..+                           ++|+.|++++
T Consensus       152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~  231 (680)
T 1ziw_A          152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN  231 (680)
T ss_dssp             CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred             ccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence            666666655544333  23556666666665544322 22221                           3344455555


Q ss_pred             CccccC-CCCCcCCCC--CcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccchhhhc------------------
Q 009119          217 NRILSI-PSSISGCCS--LAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ------------------  274 (543)
Q Consensus       217 ~~~~~~-~~~~~~~~~--L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~------------------  274 (543)
                      |.+..+ +..+..++.  |++|++++|.+..+ +.++..+++|++|++++|.+..+....+.                  
T Consensus       232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred             CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence            544422 233443332  66666666555533 23455555566666655555543332211                  


Q ss_pred             -----------------ceecEEEccCCCCCCC-ChhhcCCCCCceeecCCCCcC--cccccccCCCcHHHHHHHhccCC
Q 009119          275 -----------------LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLR--TLRSSLVNGPTPALLKYLRSRLP  334 (543)
Q Consensus       275 -----------------~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  334 (543)
                                       ..|+++++++|.+.++ +..+..+++|++|++++|.+.  .++...+.....       ..+.
T Consensus       312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~-------~~L~  384 (680)
T 1ziw_A          312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-------SPLH  384 (680)
T ss_dssp             -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT-------SCCC
T ss_pred             cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc-------CcCc
Confidence                             2245555555544443 223444555555555544321  111110000000       0000


Q ss_pred             CCcccccccchhhHHHhhhhcccccceeeeCCCCCC-CCC-hhhhccCCccEEEcCCCcCccC-ChhhccCCCCceeecc
Q 009119          335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIP-SEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILS  411 (543)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~-~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~  411 (543)
                      ......  ..............++++.+++++|.+. .++ ..+..+++|++|++++|.+..+ +..+..+++|+.|+++
T Consensus       385 ~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          385 ILNLTK--NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             EEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred             eEECCC--CCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence            000000  0000000011122345555566555554 233 3444555666666666655543 3345556666666666


Q ss_pred             cCcCC--CCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCC--------CCCCCCCcCceee
Q 009119          412 RNKIK--DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN--------PPFSSLPHLQELY  481 (543)
Q Consensus       412 ~~~i~--~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--------~~~~~~~~L~~L~  481 (543)
                      +|.++  +..+..+.++++|+.|++++|+++.++..+|..+++|++|++++|.+.....        ..+..+++|++|+
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN  542 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred             cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence            66554  2333445667777777777777777666667777777777777776654311        2256677777777


Q ss_pred             cCCCccccCchh-hhccCCCcEEeCCCCccccccc-cccCCCCCCeEeCCCCcCCcCCCC
Q 009119          482 LRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPE  539 (543)
Q Consensus       482 l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~  539 (543)
                      +++|+++.+|.. +..+++|+.|++++|+++.+|. .+..+++|+.|++++|+++.+++.
T Consensus       543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK  602 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred             CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence            777777766653 5667777777777777777643 356777777777777777766654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.1e-49  Score=408.33  Aligned_cols=452  Identities=21%  Similarity=0.231  Sum_probs=381.9

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCcCccc-chh
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA   86 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~-~~~   86 (543)
                      +.+++|+++++.++.++...+..            +++|++|++++|.+..+ +..|.++++|++|++++|.+..+ |.+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~   99 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSN------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS   99 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred             CCcCEEECCCCCcCEeChhhccC------------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence            67899999999999998866655            77899999999999987 46899999999999999999877 778


Q ss_pred             hhccCCCCEEEcCCCCCCCCC-hhhcccCCccEEecCCCCcc--cccccccCCCCCCEEEccCCcCccC-CcccccCCCc
Q 009119           87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKM  162 (543)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L  162 (543)
                      |+++++|++|++++|.+..++ ..++++++|++|++++|.+.  .+|..+.++++|++|++++|.+..+ +..+..+.+|
T Consensus       100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            999999999999999998765 67889999999999999988  4788899999999999999998865 3445555544


Q ss_pred             ----cEEEecCCcccccchhhhcccccccEEECCCCcCC-----------------------------------------
Q 009119          163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-----------------------------------------  197 (543)
Q Consensus       163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-----------------------------------------  197 (543)
                          ..+++++|.+..+....+... +|+++++++|.+.                                         
T Consensus       180 ~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l  258 (606)
T 3vq2_A          180 PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL  258 (606)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred             ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence                478888888887777766554 7888888777542                                         


Q ss_pred             -----------------cCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeC
Q 009119          198 -----------------GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL  260 (543)
Q Consensus       198 -----------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l  260 (543)
                                       .....+..+++|+.|+++++.+..+| .+..+++|+++++++|.+..+|. + .+++|++|++
T Consensus       259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l  335 (606)
T 3vq2_A          259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTL  335 (606)
T ss_dssp             GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEE
T ss_pred             hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCccccc-C-CCCccceeec
Confidence                             01112456788999999999999888 88899999999999999998984 4 9999999999


Q ss_pred             CCCcccccchhhhcceecEEEccCCCCCCC---ChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCc
Q 009119          261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGL---PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE  337 (543)
Q Consensus       261 ~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (543)
                      ++|.............|++|++++|.++..   +..+..+++|++|++++|.+..++. .+.                  
T Consensus       336 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~------------------  396 (606)
T 3vq2_A          336 TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFM------------------  396 (606)
T ss_dssp             ESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC-CCT------------------
T ss_pred             cCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh-hcc------------------
Confidence            999544322333345699999999998875   7789999999999999999876652 111                  


Q ss_pred             ccccccchhhHHHhhhhcccccceeeeCCCCCCCCC--hhhhccCCccEEEcCCCcCcc-CChhhccCCCCceeecccCc
Q 009119          338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP--SEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNK  414 (543)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~  414 (543)
                                       ..++++.+++++|.+...+  ..+..+++|++|++++|.++. .|..+..+++|++|++++|.
T Consensus       397 -----------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  459 (606)
T 3vq2_A          397 -----------------GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS  459 (606)
T ss_dssp             -----------------TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             -----------------CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence                             1367899999999988664  367789999999999999987 57778999999999999999


Q ss_pred             CCC-CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh
Q 009119          415 IKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD  493 (543)
Q Consensus       415 i~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~  493 (543)
                      +++ ..+..+..+++|++|++++|+++++....|..+++|++|++++|.+....+..+..+++|++|++++|+++.+|..
T Consensus       460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~  539 (606)
T 3vq2_A          460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI  539 (606)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred             CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence            987 4566688999999999999999998888899999999999999999998888899999999999999999999988


Q ss_pred             hhccC-CCcEEeCCCCcccc
Q 009119          494 ILRLQ-QLRILDLSQNSLQS  512 (543)
Q Consensus       494 ~~~~~-~L~~L~l~~~~l~~  512 (543)
                      +..++ +|++|++++|.+..
T Consensus       540 ~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          540 LQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             GGGSCTTCCEEECCSCCCCC
T ss_pred             HhhhcccCcEEEccCCCccc
Confidence            88886 69999999999874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.6e-47  Score=396.62  Aligned_cols=492  Identities=23%  Similarity=0.252  Sum_probs=306.2

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccC------------CCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEc
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAG------------EGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNV   75 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l   75 (543)
                      +.+++|++++++++.+|...+..+..+.            ..+.|..+++|++|++++|.+..++. .|+++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            4677788888888877776655522211            01122234444444444444444442 3444444444544


Q ss_pred             CCCcCcccc-hhhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCcccccc-cc--cCCCCCCEEEccCCcCc
Q 009119           76 SHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SL--GRCLNLSDFKASNNCIT  150 (543)
Q Consensus        76 ~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~-~~--~~~~~L~~L~l~~~~~~  150 (543)
                      ++|.+..++ .+|+++++|++|++++|.+... +..+.++++|++|++++|.++.++. .+  ..+++|++|++++|.+.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            444444443 2444444444554444444422 2234444444444444444443321 11  12344444444444443


Q ss_pred             cCC-cccccC---------------------------CCccEEEecCCcccccchhhhccccc--ccEEECCCCcCCcCc
Q 009119          151 SLP-EDLADC---------------------------SKMSKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLLNGMP  200 (543)
Q Consensus       151 ~i~-~~~~~~---------------------------~~L~~L~l~~~~i~~~~~~~~~~~~~--L~~L~l~~~~~~~~~  200 (543)
                      .++ ..+..+                           ++|+.|++++|.+..+....+..++.  |++|++++|.+..++
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            221 111111                           23344444444444333334444433  777777777776543


Q ss_pred             -hhccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCCC------CCCc----cccCCCCCCEEeCCCCccccc
Q 009119          201 -ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS------ALPA----ELGKLSKLGTLDLHSNQLKEY  268 (543)
Q Consensus       201 -~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~------~l~~----~l~~~~~L~~L~l~~n~l~~~  268 (543)
                       ..+..+++|+.|++++|.+..+ +..+..+++|+.++++++...      .+|.    .+..+++|++|++++|.+..+
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence             4567777777777777766643 334555555555555543222      1221    334444455555544444433


Q ss_pred             chhhhc------------------------------ceecEEEccCCCCCCC-ChhhcCCCCCceeecCCCCcCc-cccc
Q 009119          269 CVEACQ------------------------------LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT-LRSS  316 (543)
Q Consensus       269 ~~~~~~------------------------------~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~~~-~~~~  316 (543)
                      ....+.                              ..++.+++++|.++.+ +..+..+++|+.|++++|.+.. ++..
T Consensus       345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  424 (680)
T 1ziw_A          345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ  424 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred             ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence            332211                              2355555555555552 3445556666666666665532 2111


Q ss_pred             ccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCC-ChhhhccCCccEEEcCCCcCcc-
Q 009119          317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-  394 (543)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~-  394 (543)
                      .+                                   ...++++++++++|.+..+ +..+..+++|+.|++++|.++. 
T Consensus       425 ~~-----------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  469 (680)
T 1ziw_A          425 EW-----------------------------------RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV  469 (680)
T ss_dssp             GG-----------------------------------TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred             cc-----------------------------------cCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence            11                                   2246789999999998754 4456678999999999998763 


Q ss_pred             --CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCC--------ccCCCCCccEEEccCCcCC
Q 009119          395 --LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD--------GFKDIPMLQILDLSYNIAS  464 (543)
Q Consensus       395 --l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~--------~~~~~~~L~~L~l~~n~~~  464 (543)
                        +|..+..+++|+.|++++|+++++.+..+.++++|++|++++|+++.+...        .|..+++|++|++++|.+.
T Consensus       470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  549 (680)
T 1ziw_A          470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD  549 (680)
T ss_dssp             TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred             ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence              688899999999999999999999998899999999999999999876432        3788999999999999999


Q ss_pred             CCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCcccccc-cccc-CCCCCCeEeCCCCcCCc
Q 009119          465 LPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP-EGFK-NLTSLTELDLSDNNISA  535 (543)
Q Consensus       465 ~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~-~~l~-~~~~L~~L~l~~~~~~~  535 (543)
                      .+....|..+++|++|++++|+++.+|.. +..+++|+.|++++|+++.++ ..+. .+++|+.|++++|++..
T Consensus       550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c  623 (680)
T 1ziw_A          550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC  623 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred             CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence            87777899999999999999999988776 567999999999999999885 4466 78999999999999873

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-47  Score=390.19  Aligned_cols=474  Identities=22%  Similarity=0.282  Sum_probs=393.7

Q ss_pred             cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccc-hhhh
Q 009119           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG   88 (543)
Q Consensus        11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~   88 (543)
                      .+.++|++.+++++|..+.               +++++|++++|.++.++ ..|.++++|++|++++|.+..++ .+|.
T Consensus         9 ~~~~~c~~~~l~~ip~~l~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~   73 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ   73 (570)
T ss_dssp             TTEEECCSSCCSSCCSSSC---------------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred             CcEEEeCCCCccccCCCcc---------------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence            3579999999999998773               46999999999999885 58999999999999999999874 5799


Q ss_pred             ccCCCCEEEcCCCCCCCCC-hhhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCCcCcc--CCcccccCCCccE
Q 009119           89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK  164 (543)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--i~~~~~~~~~L~~  164 (543)
                      ++++|++|++++|.+..++ ..+.++++|++|++++|.++.++. .+.++++|++|++++|.+..  +|..+..+++|++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  153 (570)
T 2z63_A           74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (570)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence            9999999999999998665 679999999999999999998875 68999999999999999985  6889999999999


Q ss_pred             EEecCCcccccchhhhcccccc----cEEECCCCcCCcCchhccCCCcccEEEccCCccc--cCCC--------------
Q 009119          165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPS--------------  224 (543)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~--------------  224 (543)
                      |++++|.+..+....+..+.+|    +++++++|.+..++.......+|+.|+++++...  .++.              
T Consensus       154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred             EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence            9999999998877778888888    8999999999877654444458999999887322  1111              


Q ss_pred             ----------------CCcCCC--CCcEEEcCCC-CCC-CCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccC
Q 009119          225 ----------------SISGCC--SLAEFYMGNN-ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN  284 (543)
Q Consensus       225 ----------------~~~~~~--~L~~l~l~~~-~l~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  284 (543)
                                      .+..++  .++.+.+.++ .+. ..+..+..+++|++|++++|.+..++.......+++|++++
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~  313 (570)
T 2z63_A          234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN  313 (570)
T ss_dssp             EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEES
T ss_pred             cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeecc
Confidence                            111122  2334444444 222 45667788899999999999888777665555899999999


Q ss_pred             CCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeee
Q 009119          285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL  364 (543)
Q Consensus       285 ~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l  364 (543)
                      |.+..+|.  ..+++|+.|++++|........                                     ...++++++++
T Consensus       314 n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-------------------------------------~~~~~L~~L~l  354 (570)
T 2z63_A          314 CKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-------------------------------------VDLPSLEFLDL  354 (570)
T ss_dssp             CBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-------------------------------------CBCTTCCEEEC
T ss_pred             CcccccCc--ccccccCEEeCcCCcccccccc-------------------------------------ccCCCCCEEeC
Confidence            99888776  5788999999999876432211                                     12367899999


Q ss_pred             CCCCCCCC---ChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCH-HHhhCCCCCCEEEcCCCCCc
Q 009119          365 EGMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLR  440 (543)
Q Consensus       365 ~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~L~~n~l~  440 (543)
                      +++.+...   +..+..+++|++|++++|.++.++..+..+++|+.|++++|.+++..+ ..+.++++|++|++++|.+.
T Consensus       355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  434 (570)
T ss_dssp             CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred             cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence            99988755   577888999999999999999987778999999999999999987654 56789999999999999999


Q ss_pred             ccCCCccCCCCCccEEEccCCcCC-CCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCcccccc-ccc
Q 009119          441 QVPSDGFKDIPMLQILDLSYNIAS-LPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGF  517 (543)
Q Consensus       441 ~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~l~-~~l  517 (543)
                      ......+..+++|++|++++|.+. ...+..+..+++|++|++++|+++.+ |..+..+++|++|++++|+++.++ ..+
T Consensus       435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence            888888999999999999999986 34567789999999999999999976 778889999999999999999884 668


Q ss_pred             cCCCCCCeEeCCCCcCC-cCCC
Q 009119          518 KNLTSLTELDLSDNNIS-ALPP  538 (543)
Q Consensus       518 ~~~~~L~~L~l~~~~~~-~~~~  538 (543)
                      ..+++|+.|++++|+++ +.|.
T Consensus       515 ~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          515 DRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTCTTCCEEECCSSCBCCCTTT
T ss_pred             hcccCCcEEEecCCcccCCCcc
Confidence            99999999999999988 4443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6e-46  Score=383.72  Aligned_cols=457  Identities=22%  Similarity=0.237  Sum_probs=344.2

Q ss_pred             CccEEEcCccccccchHHhcCCCCCCEEEcCCCcCccc-chhhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCC
Q 009119           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS  123 (543)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~  123 (543)
                      .-+.+++++..++++|..+..  ++++|++++|.++.+ |.+|.++++|++|++++|.+..+ |.+|.++++|++|++++
T Consensus        13 ~~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           13 VNKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TTTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence            356899999999999987764  799999999999987 56899999999999999998855 67899999999999999


Q ss_pred             CCcccc-cccccCCCCCCEEEccCCcCccC-CcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcC-c
Q 009119          124 NQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-P  200 (543)
Q Consensus       124 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~  200 (543)
                      |.+..+ |..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+....+..+++|++|++++|.+..+ +
T Consensus        91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A           91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred             CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence            999865 67899999999999999999987 56789999999999999999987655577799999999999999876 4


Q ss_pred             hhccCCCccc--EEEccCCccccCCCCCcCCCCCcEEE------------------------------------------
Q 009119          201 ETIGSLSRLI--RLDLHQNRILSIPSSISGCCSLAEFY------------------------------------------  236 (543)
Q Consensus       201 ~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~L~~l~------------------------------------------  236 (543)
                      ..+..+++|+  .|++++|.+..++........|+.++                                          
T Consensus       171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~  250 (606)
T 3t6q_A          171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG  250 (606)
T ss_dssp             HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred             hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence            5688899999  89999999886655444444444444                                          


Q ss_pred             ----------cCCCCCCCCCc-cccCCCCCCEEeCCCCcccccchhhhc-ceecEEEccCCCCCCC-ChhhcCCCCCcee
Q 009119          237 ----------MGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGL-PPEIGKMTTLRKL  303 (543)
Q Consensus       237 ----------l~~~~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L  303 (543)
                                +++|.+..++. .+..+++|++|++++|.++.++..... ..|++|++++|.+..+ +..+..+++|++|
T Consensus       251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL  330 (606)
T ss_dssp             GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred             hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence                      44444443332 244455555555555555544433222 2255555555555543 3344555555555


Q ss_pred             ecCCCCcC-cccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCC---Chhhhcc
Q 009119          304 LLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI---PSEIWEA  379 (543)
Q Consensus       304 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~  379 (543)
                      ++++|.+. .++...                                   ....+++++++++++.+..+   +..+..+
T Consensus       331 ~l~~n~~~~~~~~~~-----------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  375 (606)
T 3t6q_A          331 SIKGNTKRLELGTGC-----------------------------------LENLENLRELDLSHDDIETSDCCNLQLRNL  375 (606)
T ss_dssp             ECCSCSSCCBCCSST-----------------------------------TTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred             ECCCCCcccccchhh-----------------------------------hhccCcCCEEECCCCccccccCcchhcccC
Confidence            55555433 111111                                   11236788888888887754   5567778


Q ss_pred             CCccEEEcCCCcCccC-ChhhccCCCCceeecccCcCCCCCH-HHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEE
Q 009119          380 GEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (543)
Q Consensus       380 ~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  457 (543)
                      ++|++|++++|.+..+ |..+..+++|+.|++++|.+++..+ ..+.++++|++|++++|.+.......+..+++|++|+
T Consensus       376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  455 (606)
T 3t6q_A          376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN  455 (606)
T ss_dssp             TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence            8888888888888774 5667888888888888888876543 3477888888888888888887777788888888888


Q ss_pred             ccCCcCCCC---CCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCccccc-cccccCCCCCCeEeCCCCc
Q 009119          458 LSYNIASLP---ENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNN  532 (543)
Q Consensus       458 l~~n~~~~~---~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~  532 (543)
                      +++|.+...   ....+..+++|++|++++|.++.+ |..+..+++|+.|++++|+++.+ |+.+..+++| .|++++|+
T Consensus       456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH  534 (606)
T ss_dssp             CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred             CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence            888887652   234577888888999998888865 56678888899999999888865 6778888888 88999998


Q ss_pred             CCcCCCCc
Q 009119          533 ISALPPEL  540 (543)
Q Consensus       533 ~~~~~~~~  540 (543)
                      ++.+++..
T Consensus       535 l~~~~~~~  542 (606)
T 3t6q_A          535 ISIILPSL  542 (606)
T ss_dssp             CCCCCGGG
T ss_pred             ccccCHhh
Confidence            88877654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.2e-45  Score=386.61  Aligned_cols=470  Identities=23%  Similarity=0.268  Sum_probs=335.3

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCc-Cccc-chhhh
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PAAIG   88 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~-l~~~-~~~~~   88 (543)
                      +.+||++++++.+|. +               .+++++|+|++|.++.+ +..|+++++|++|++++|. +..+ |.+|.
T Consensus         7 ~~~dcs~~~L~~vP~-l---------------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~   70 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ-V---------------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR   70 (844)
T ss_dssp             EEEEESCCCSSCCCS-S---------------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred             eEEEccCCCCCCCCC-C---------------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence            478999999999998 5               45799999999999977 5789999999999999994 4466 66899


Q ss_pred             ccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCccc-cccc--ccCCCCCCEEEccCCcCccC--CcccccCCCc
Q 009119           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSL--PEDLADCSKM  162 (543)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~i--~~~~~~~~~L  162 (543)
                      ++++|++|++++|.+..+ |..+.++++|++|++++|.+.. ++..  +.++++|++|++++|.+..+  +..+..+++|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            999999999999998865 7789999999999999999885 4443  88999999999999999865  3568999999


Q ss_pred             cEEEecCCcccccchhhhccc--ccccEEECCCCcCCc-CchhccCCCc------ccEEEccCCcccc-CCCC-------
Q 009119          163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRILS-IPSS-------  225 (543)
Q Consensus       163 ~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~~~~~-~~~~-------  225 (543)
                      ++|++++|.+..+....+..+  ++|+.|++++|.+.. .+..+..+.+      |+.|++++|.+.. .+..       
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            999999999887766667766  789999999988754 3444444443      8889998885541 1111       


Q ss_pred             -----------------------------CcC--CCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccchhhh
Q 009119          226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC  273 (543)
Q Consensus       226 -----------------------------~~~--~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~  273 (543)
                                                   +..  .++|+.|++++|.+..+ +..+..+++|++|++++|.+..+....+
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  310 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF  310 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence                                         111  36788999998888844 5677888999999999998887765443


Q ss_pred             c--ceecEEEccCCCCCCC-ChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHH
Q 009119          274 Q--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (543)
Q Consensus       274 ~--~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (543)
                      .  ..|++|++++|.+..+ +..+..+++|+.|++++|.+..++...+..                              
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~------------------------------  360 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF------------------------------  360 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS------------------------------
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC------------------------------
Confidence            3  3589999999988875 667888899999999999887766544432                              


Q ss_pred             hhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCH-HHhhCCCCC
Q 009119          351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSL  429 (543)
Q Consensus       351 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~L  429 (543)
                           .++++.+++++|.++.++.    +++|+.+++++|.++.+|..   ..+++.|++++|+++++.. ..+.++++|
T Consensus       361 -----l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L  428 (844)
T 3j0a_A          361 -----LEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL  428 (844)
T ss_dssp             -----CCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred             -----CCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence                 2466777777777665543    56677777777766666532   3456666666666665433 223466666


Q ss_pred             CEEEcCCCCCcccCCC-ccCCCCCccEEEccCCcCCCC-----CCCCCCCCCcCceeecCCCccccCchh-hhccCCCcE
Q 009119          430 SCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASLP-----ENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRI  502 (543)
Q Consensus       430 ~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~  502 (543)
                      +.|++++|+++..... .+..+++|+.|++++|.+...     .+..|..+++|++|++++|.++.++.. +..+++|+.
T Consensus       429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  508 (844)
T 3j0a_A          429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG  508 (844)
T ss_dssp             CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred             ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence            6666666666654322 244456666666666665422     223455666666666666666655433 455666666


Q ss_pred             EeCCCCccccccccccCCCCCCeEeCCCCcCCcCCCCc
Q 009119          503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL  540 (543)
Q Consensus       503 L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~  540 (543)
                      |++++|+++.+|...-. ++|+.|++++|+++.+++..
T Consensus       509 L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~  545 (844)
T 3j0a_A          509 LSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDV  545 (844)
T ss_dssp             EEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCC
T ss_pred             eECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhH
Confidence            66666666665432212 56666666666666555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.9e-44  Score=368.19  Aligned_cols=466  Identities=20%  Similarity=0.241  Sum_probs=368.3

Q ss_pred             hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCcCcccc-hhh
Q 009119           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AAI   87 (543)
Q Consensus        10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~~-~~~   87 (543)
                      .....|+++++++++|..++               ++|++|++++|.++.+ +..|+++++|++|++++|.+..++ .+|
T Consensus         6 ~~~~c~~~~~~l~~ip~~~~---------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~   70 (549)
T 2z81_A            6 ASGVCDGRSRSFTSIPSGLT---------------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF   70 (549)
T ss_dssp             TTSEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTT
T ss_pred             CCceEECCCCccccccccCC---------------CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhc
Confidence            34457899999999998774               4699999999999977 468999999999999999999775 589


Q ss_pred             hccCCCCEEEcCCCCCCCCChh-hcccCCccEEecCCCCccc--ccccccCCCCCCEEEccCCc-CccCC-cccccCCCc
Q 009119           88 GELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCSKM  162 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~i~-~~~~~~~~L  162 (543)
                      ..+++|++|++++|.+..++.. ++++++|++|++++|.++.  +|..+.++++|++|++++|. +..++ ..+..+++|
T Consensus        71 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  150 (549)
T 2z81_A           71 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL  150 (549)
T ss_dssp             TTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             cccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence            9999999999999999987665 9999999999999999984  46788999999999999998 55665 578999999


Q ss_pred             cEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc-cCCCcccEEEccCCccccCC----CCCcCCCCCcEEEc
Q 009119          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYM  237 (543)
Q Consensus       163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~l~l  237 (543)
                      ++|++++|.+.......+..+++|++|+++.+....++..+ ..+++|+.|++++|.+..++    .....+++|+.+++
T Consensus       151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l  230 (549)
T 2z81_A          151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF  230 (549)
T ss_dssp             EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred             CeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceec
Confidence            99999999998877777899999999999999988777654 56899999999999988652    22345788999999


Q ss_pred             CCCCCC-----CCCccccCCCCCCEEeCCCCcccccchh--------hhcceecEEEccCCCCCCC------ChhhcCCC
Q 009119          238 GNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVE--------ACQLRLSVLDLSNNSLSGL------PPEIGKMT  298 (543)
Q Consensus       238 ~~~~l~-----~l~~~l~~~~~L~~L~l~~n~l~~~~~~--------~~~~~L~~L~l~~~~i~~~------~~~l~~~~  298 (543)
                      +++.+.     .++..+..+++|+.+++++|.+..+...        .....++.+++.++.+...      +......+
T Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~  310 (549)
T 2z81_A          231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE  310 (549)
T ss_dssp             ESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST
T ss_pred             cccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcc
Confidence            998776     2334456778899999998877653221        1123477788777765542      22234456


Q ss_pred             CCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCC-CC---h
Q 009119          299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IP---S  374 (543)
Q Consensus       299 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~---~  374 (543)
                      +++.+++++|.+..++...+                                   ...++++++++++|.+.. ++   .
T Consensus       311 ~L~~L~l~~n~l~~ip~~~~-----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~  355 (549)
T 2z81_A          311 KVKRITVENSKVFLVPCSFS-----------------------------------QHLKSLEFLDLSENLMVEEYLKNSA  355 (549)
T ss_dssp             TCCEEEEESSCCCCCCHHHH-----------------------------------HHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred             cceEEEeccCccccCCHHHH-----------------------------------hcCccccEEEccCCccccccccchh
Confidence            78888888877655432111                                   123567888888887764 22   2


Q ss_pred             hhhccCCccEEEcCCCcCccCC---hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCC
Q 009119          375 EIWEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (543)
Q Consensus       375 ~~~~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~  451 (543)
                      .+..+++|++|++++|.++.++   ..+..+++|++|++++|+++.++. .+..+++|++|++++|+++.++...   .+
T Consensus       356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~---~~  431 (549)
T 2z81_A          356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCI---PQ  431 (549)
T ss_dssp             CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTS---CT
T ss_pred             hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-hhcccccccEEECCCCCcccccchh---cC
Confidence            2456788999999999888865   347888899999999998887654 3577889999999999888766442   36


Q ss_pred             CccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccccc-ccccCCCCCCeEeCCC
Q 009119          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSD  530 (543)
Q Consensus       452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~  530 (543)
                      +|++|++++|.++..    ...+++|++|++++|+++.+|. ...+++|++|++++|+++.++ ..+..+++|+.|++++
T Consensus       432 ~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  506 (549)
T 2z81_A          432 TLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT  506 (549)
T ss_dssp             TCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred             CceEEECCCCChhhh----cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence            899999999988764    3578899999999999998886 456899999999999999874 5688999999999999


Q ss_pred             CcCC
Q 009119          531 NNIS  534 (543)
Q Consensus       531 ~~~~  534 (543)
                      |++.
T Consensus       507 N~~~  510 (549)
T 2z81_A          507 NPWD  510 (549)
T ss_dssp             SCBC
T ss_pred             CCcc
Confidence            9875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.8e-44  Score=379.94  Aligned_cols=469  Identities=25%  Similarity=0.280  Sum_probs=383.6

Q ss_pred             HhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccc-cccc-hHHhcCCCCCCEEEcCCCcCccc-c
Q 009119            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN-IEKL-KEDLRNLPLLTVLNVSHNKLSEL-P   84 (543)
Q Consensus         8 ~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l-~~~~~~~~~L~~L~l~~~~l~~~-~   84 (543)
                      .+++++||++++.++.++...+..            +++|++|++++|. +..+ +..|+++++|++|+|++|.+..+ |
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~------------l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPF------------LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSS------------CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCcCEEECCCCcCCccChhHCcc------------cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            367899999999999887665554            7889999999994 5567 67899999999999999999976 7


Q ss_pred             hhhhccCCCCEEEcCCCCCCC-CChh--hcccCCccEEecCCCCccccc--ccccCCCCCCEEEccCCcCccC-Cccccc
Q 009119           85 AAIGELHMLKSLDVSFNSIMK-IPDE--IGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSL-PEDLAD  158 (543)
Q Consensus        85 ~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i-~~~~~~  158 (543)
                      .+|.++++|++|++++|.+.. ++..  +.++++|++|++++|.+..++  ..+.++++|++|++++|.+..+ +..+..
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            799999999999999999884 4544  889999999999999998653  5789999999999999998854 556666


Q ss_pred             C--CCccEEEecCCcccccchhhhccccc------ccEEECCCCcCCc-Cchh---------------------------
Q 009119          159 C--SKMSKLDVEGNKLTVLSNNLIASWTM------LTELIASKNLLNG-MPET---------------------------  202 (543)
Q Consensus       159 ~--~~L~~L~l~~~~i~~~~~~~~~~~~~------L~~L~l~~~~~~~-~~~~---------------------------  202 (543)
                      +  ++|+.|++++|.+.......+..+.+      |++|++++|.+.. .+..                           
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~  250 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH  250 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred             ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence            6  88999999998877544333444433      8899999886531 1111                           


Q ss_pred             ---------ccC--CCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccc
Q 009119          203 ---------IGS--LSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC  269 (543)
Q Consensus       203 ---------l~~--~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~  269 (543)
                               +..  .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.+.
T Consensus       251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  330 (844)
T 3j0a_A          251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY  330 (844)
T ss_dssp             SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred             ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence                     111  26799999999988855 56788999999999999999955 567899999999999999998775


Q ss_pred             hhhhc--ceecEEEccCCCCCCCCh-hhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchh
Q 009119          270 VEACQ--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE  346 (543)
Q Consensus       270 ~~~~~--~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (543)
                      ...+.  ..|++|++++|.+..++. .+..+++|++|++++|.++.++.                               
T Consensus       331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-------------------------------  379 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-------------------------------  379 (844)
T ss_dssp             SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-------------------------------
T ss_pred             HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-------------------------------
Confidence            54333  359999999999988654 58889999999999998865532                               


Q ss_pred             hHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh--hhccCCCCceeecccCcCCCCCHH-Hh
Q 009119          347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDA-IL  423 (543)
Q Consensus       347 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~i~~~~~~-~l  423 (543)
                               .++++.+++++|.+..++..   ..+++.+++++|.++.++.  .+..+++|+.|++++|++++.... .+
T Consensus       380 ---------~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  447 (844)
T 3j0a_A          380 ---------IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP  447 (844)
T ss_dssp             ---------CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred             ---------CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence                     25789999999999988754   4678999999999998754  356899999999999999875432 35


Q ss_pred             hCCCCCCEEEcCCCCCccc-----CCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccC
Q 009119          424 TSLSSLSCLKLDNNPLRQV-----PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQ  498 (543)
Q Consensus       424 ~~~~~L~~L~L~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~  498 (543)
                      ..+++|+.|++++|.+...     ....|..+++|++|++++|.++...+..|..+++|++|++++|+++.++..... +
T Consensus       448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~  526 (844)
T 3j0a_A          448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-A  526 (844)
T ss_dssp             CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-S
T ss_pred             ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-c
Confidence            6689999999999998743     334588899999999999999998888899999999999999999988766555 8


Q ss_pred             CCcEEeCCCCccccccccccCCCCCCeEeCCCCcCC
Q 009119          499 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS  534 (543)
Q Consensus       499 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~  534 (543)
                      +|+.|++++|+++.++.  ..+++|+.|++++|++.
T Consensus       527 ~L~~L~Ls~N~l~~~~~--~~~~~L~~l~l~~Np~~  560 (844)
T 3j0a_A          527 NLEILDISRNQLLAPNP--DVFVSLSVLDITHNKFI  560 (844)
T ss_dssp             CCCEEEEEEECCCCCCS--CCCSSCCEEEEEEECCC
T ss_pred             cccEEECCCCcCCCCCh--hHhCCcCEEEecCCCcc
Confidence            99999999999998743  23468999999999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-43  Score=362.79  Aligned_cols=455  Identities=21%  Similarity=0.241  Sum_probs=377.9

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccc-hh
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AA   86 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~-~~   86 (543)
                      +.+++|++++++++.++...+..            +++|++|++++|.+..++ ..|+++++|++|++++|.+..++ .+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTT------------CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccEEEccCCccCccChhHhhC------------CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence            46889999999999988766554            788999999999999885 67999999999999999999775 58


Q ss_pred             hhccCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCccc--ccccccCCCCCCEEEccCCcCccC-CcccccCCCc
Q 009119           87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKM  162 (543)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L  162 (543)
                      |..+++|++|++++|.+..++. .++.+++|++|++++|.+..  +|..+.++++|++|++++|.+..+ +..+..+.+|
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            9999999999999999998765 68999999999999999985  688999999999999999999866 4567777788


Q ss_pred             ----cEEEecCCcccccchhhhcccccccEEECCCCcCC--cCchhccCCCc----------------------------
Q 009119          163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSR----------------------------  208 (543)
Q Consensus       163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~----------------------------  208 (543)
                          +.+++++|.+..+....+... +|+++++++|...  .++..+..++.                            
T Consensus       176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l  254 (570)
T 2z63_A          176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  254 (570)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred             chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence                899999999998887777665 7999998887431  12222222222                            


Q ss_pred             ----ccEEEccCC-ccc-cCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEc
Q 009119          209 ----LIRLDLHQN-RIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (543)
Q Consensus       209 ----L~~L~l~~~-~~~-~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  282 (543)
                          ++.+++.++ .+. ..+..+..+++|++++++++.+..+|..+..+ +|++|++++|.+..++.. ....|+++++
T Consensus       255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~-~l~~L~~L~l  332 (570)
T 2z63_A          255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTL-KLKSLKRLTF  332 (570)
T ss_dssp             GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBC-BCSSCCEEEE
T ss_pred             cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcc-cccccCEEeC
Confidence                344555544 322 45677888999999999999999999988888 999999999999877763 3456999999


Q ss_pred             cCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhccccccee
Q 009119          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (543)
Q Consensus       283 ~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (543)
                      ++|.+...... ..+++|++|++++|.+......                                 .......++++++
T Consensus       333 ~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~---------------------------------~~~~~~~~~L~~L  378 (570)
T 2z63_A          333 TSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCC---------------------------------SQSDFGTTSLKYL  378 (570)
T ss_dssp             ESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEE---------------------------------EHHHHTCSCCCEE
T ss_pred             cCCcccccccc-ccCCCCCEEeCcCCccCccccc---------------------------------cccccccCccCEE
Confidence            99988774333 7889999999999987544200                                 0011224689999


Q ss_pred             eeCCCCCCCCChhhhccCCccEEEcCCCcCccCC--hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCc
Q 009119          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (543)
Q Consensus       363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~  440 (543)
                      ++++|.+..++..+..+++|++|++++|.+...+  ..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.
T Consensus       379 ~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  458 (570)
T 2z63_A          379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  458 (570)
T ss_dssp             ECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             ECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc
Confidence            9999999888777888999999999999998854  36889999999999999999988888999999999999999987


Q ss_pred             c-cCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCch-hhhccCCCcEEeCCCCcccc
Q 009119          441 Q-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQS  512 (543)
Q Consensus       441 ~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~  512 (543)
                      + .....+..+++|++|++++|.+....+..+..+++|++|++++|+++.++. .+..+++|+.|++++|.+..
T Consensus       459 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            3 334568999999999999999998888889999999999999999997764 57889999999999999874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-43  Score=357.58  Aligned_cols=447  Identities=20%  Similarity=0.251  Sum_probs=327.1

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhhhc
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~   89 (543)
                      +++|+++++++++|..++               ++|++|++++|.+..++ ..|.++++|++|++++|.+..+ |.+|.+
T Consensus         3 ~~l~ls~n~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   67 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---------------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF   67 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---------------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred             ceEecCCCCccccccccc---------------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence            578899999998887663               46889999999888775 6788888899999988888866 568888


Q ss_pred             cCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCccc--ccccccCCCCCCEEEccCCcCccCCcccccCCCc--cEE
Q 009119           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL  165 (543)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L--~~L  165 (543)
                      +++|++|++++|.+..+|..  .+++|++|++++|.++.  +|..++++++|++|++++|.+..  ..+..+++|  +.|
T Consensus        68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV  143 (520)
T ss_dssp             CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred             ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence            88888888888888877665  67888888888888774  45677777777777777777664  245555566  677


Q ss_pred             EecCCcc--cccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCcccc-C-CCCCcCCCCCcEEEcCCCC
Q 009119          166 DVEGNKL--TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-I-PSSISGCCSLAEFYMGNNA  241 (543)
Q Consensus       166 ~l~~~~i--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~-~~~~~~~~~L~~l~l~~~~  241 (543)
                      ++++|.+  .......+..+..                      ....+++++|.+.. + +..+..+++|+.+++++|.
T Consensus       144 ~l~~n~l~~~~~~~~~l~~l~~----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  201 (520)
T 2z7x_B          144 LLVLGETYGEKEDPEGLQDFNT----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL  201 (520)
T ss_dssp             EEEECTTTTSSCCTTTTTTCCE----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred             Eeeccccccccccccccccccc----------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence            7666655  2222222222211                      12233444443331 1 1233445555555555553


Q ss_pred             -------CCCCCccccCCCCCCEEeCCCCcccccc-----hhhhcceecEEEccCCCCC-CCChhh-----cCCCCCcee
Q 009119          242 -------LSALPAELGKLSKLGTLDLHSNQLKEYC-----VEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKL  303 (543)
Q Consensus       242 -------l~~l~~~l~~~~~L~~L~l~~n~l~~~~-----~~~~~~~L~~L~l~~~~i~-~~~~~l-----~~~~~L~~L  303 (543)
                             +......+..+++|++|+++++.+....     .......++++++++|.+. .+|..+     .++++|+.+
T Consensus       202 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l  281 (520)
T 2z7x_B          202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH  281 (520)
T ss_dssp             STTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred             cccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence                   2211225666777888887777665322     1222336888888888777 477766     788888888


Q ss_pred             ecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCcc
Q 009119          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT  383 (543)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~  383 (543)
                      ++++|.+ .++...                              ....  ....+++.++++++.+..++. ...+++|+
T Consensus       282 ~l~~n~~-~~p~~~------------------------------~~~~--~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~  327 (520)
T 2z7x_B          282 QVVSDVF-GFPQSY------------------------------IYEI--FSNMNIKNFTVSGTRMVHMLC-PSKISPFL  327 (520)
T ss_dssp             EEEECCC-CSCTHH------------------------------HHHH--HHTCCCSEEEEESSCCCCCCC-CSSCCCCC
T ss_pred             cccccce-ecchhh------------------------------hhcc--cccCceeEEEcCCCccccccc-hhhCCccc
Confidence            8888876 332100                              0000  011357889999888776542 24678999


Q ss_pred             EEEcCCCcCcc-CChhhccCCCCceeecccCcCCCCC--HHHhhCCCCCCEEEcCCCCCcc-cCCCccCCCCCccEEEcc
Q 009119          384 KLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWP--DAILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLS  459 (543)
Q Consensus       384 ~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~--~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~  459 (543)
                      +|++++|.+++ +|..+..+++|+.|++++|+++++.  +..+..+++|++|++++|.+.+ ++...+..+++|++|+++
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence            99999999988 7888999999999999999999754  3668999999999999999998 777778999999999999


Q ss_pred             CCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccccccc-ccCCCCCCeEeCCCCcCCc
Q 009119          460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA  535 (543)
Q Consensus       460 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~  535 (543)
                      +|.+....+..+.  ++|++|++++|+++.+|..+..+++|++|++++|+++.+|.. +..+++|+.|++++|+++.
T Consensus       408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          408 SNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             SSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            9998765443332  799999999999999999888999999999999999999876 8999999999999999873

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.6e-42  Score=350.56  Aligned_cols=458  Identities=19%  Similarity=0.233  Sum_probs=374.8

Q ss_pred             ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCccc-chhhhccCCCCEEEcCCCCCCCCC-hhhcccCCccEEec
Q 009119           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC  121 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l  121 (543)
                      |+.....+++++.++.+|..+.  ++|++|++++|.+..+ +.+|..+++|++|++++|.+..++ .++..+++|++|++
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            4445567889999999987664  8999999999999977 568999999999999999999664 67999999999999


Q ss_pred             CCCCccccccc-ccCCCCCCEEEccCCcCcc--CCcccccCCCccEEEecCCc-ccccchhhhcccccccEEECCCCcCC
Q 009119          122 SSNQLKELPSS-LGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLN  197 (543)
Q Consensus       122 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~--i~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~l~~~~~~  197 (543)
                      ++|.+..++.. +.++++|++|++++|.+..  .+..+..+++|++|++++|. +..+....+..+++|++|++++|.+.
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            99999987654 8999999999999999984  46789999999999999997 67777677999999999999999996


Q ss_pred             c-CchhccCCCcccEEEccCCccccCCCCC-cCCCCCcEEEcCCCCCCCCC----ccccCCCCCCEEeCCCCcccccchh
Q 009119          198 G-MPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP----AELGKLSKLGTLDLHSNQLKEYCVE  271 (543)
Q Consensus       198 ~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l~l~~~~l~~l~----~~l~~~~~L~~L~l~~n~l~~~~~~  271 (543)
                      . .+..+..+++|+.|+++++.+..++..+ ..+++|+.+++++|.+..++    .....+++|+.|++++|.+.+....
T Consensus       162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  241 (549)
T 2z81_A          162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN  241 (549)
T ss_dssp             EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred             ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence            5 6778899999999999999887665543 45899999999999998652    2334578999999999988743322


Q ss_pred             h------hcceecEEEccCCCCCCCC-------hhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcc
Q 009119          272 A------CQLRLSVLDLSNNSLSGLP-------PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED  338 (543)
Q Consensus       272 ~------~~~~L~~L~l~~~~i~~~~-------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (543)
                      .      ....++.+++++|.+.+++       ..+..+.+++.+.+.++.+......  ..                  
T Consensus       242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~--~~------------------  301 (549)
T 2z81_A          242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF--YD------------------  301 (549)
T ss_dssp             HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS--CC------------------
T ss_pred             HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhc--cc------------------
Confidence            1      1234899999999766532       2345678888999888765432110  00                  


Q ss_pred             cccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhh-ccCCccEEEcCCCcCcc-CC---hhhccCCCCceeecccC
Q 009119          339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQE-LP---PELSSCASLQTLILSRN  413 (543)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~-l~---~~~~~~~~L~~L~l~~~  413 (543)
                                ..........++.++++++.+..+|..++ .+++|++|++++|.+++ +|   ..+..+++|++|++++|
T Consensus       302 ----------l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  371 (549)
T 2z81_A          302 ----------LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN  371 (549)
T ss_dssp             ----------CCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred             ----------chhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence                      00011224678999999999999998875 69999999999999987 33   23678999999999999


Q ss_pred             cCCCCCH--HHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCc
Q 009119          414 KIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP  491 (543)
Q Consensus       414 ~i~~~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  491 (543)
                      +++++..  ..+..+++|++|++++|+++.++.. +..+++|++|++++|.+.......   .++|++|++++|+++.++
T Consensus       372 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N~l~~~~  447 (549)
T 2z81_A          372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDSFS  447 (549)
T ss_dssp             CCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCSCCCTTS---CTTCSEEECCSSCCSCCC
T ss_pred             cccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcccccchh---cCCceEEECCCCChhhhc
Confidence            9998754  5688999999999999999987754 788999999999999987653322   368999999999999765


Q ss_pred             hhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCcCCCCcC
Q 009119          492 TDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELV  541 (543)
Q Consensus       492 ~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~  541 (543)
                         ..+++|++|++++|+++.+|. ...+++|+.|++++|+++.+|++.+
T Consensus       448 ---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~  493 (549)
T 2z81_A          448 ---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIF  493 (549)
T ss_dssp             ---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred             ---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence               468999999999999999986 4689999999999999999888643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.9e-41  Score=350.59  Aligned_cols=475  Identities=21%  Similarity=0.258  Sum_probs=356.7

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccch-hhhc
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~   89 (543)
                      .++||++.++++||..+.               +++++|+|++|.++.++ .+|+++++|++|+|++|.+..+++ +|.+
T Consensus        34 ~~~~c~~~~l~~vP~~lp---------------~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~   98 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   98 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CEEECCCCCcCccCCCCC---------------cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence            468999999999999884               46999999999999997 589999999999999999998865 8999


Q ss_pred             cCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCCcCcc--CCcccccCCCccEE
Q 009119           90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL  165 (543)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--i~~~~~~~~~L~~L  165 (543)
                      +++|++|+|++|+++.+|. +|.++++|++|++++|+++.++. .++++++|++|++++|.+..  ++..+..+++|++|
T Consensus        99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  178 (635)
T 4g8a_A           99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  178 (635)
T ss_dssp             CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence            9999999999999998865 68999999999999999998874 58999999999999999984  56778999999999


Q ss_pred             EecCCcccccchhhhcccccc----cEEECCCCcCCcCchhccCCCcccEEEccCCccc--cCC----------------
Q 009119          166 DVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIP----------------  223 (543)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~----------------  223 (543)
                      ++++|.+..+....+..+.++    ..++++.+.+..++........+..+++.++...  ..+                
T Consensus       179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  258 (635)
T 4g8a_A          179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  258 (635)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred             cccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence            999999998877667666543    4678888888766655545555666666655322  000                


Q ss_pred             --------------CCCcCCCCCcEEEcCCCCCC----CCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCC
Q 009119          224 --------------SSISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (543)
Q Consensus       224 --------------~~~~~~~~L~~l~l~~~~l~----~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~  285 (543)
                                    ..+.....+....+..+...    ..+..+....+++.+++.++.+..+........++.+++.+|
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  338 (635)
T 4g8a_A          259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC  338 (635)
T ss_dssp             ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc
Confidence                          11112222222222211111    112223334556666666655555444444444566666655


Q ss_pred             CCCCCCh--------------------hhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccch
Q 009119          286 SLSGLPP--------------------EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK  345 (543)
Q Consensus       286 ~i~~~~~--------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (543)
                      .+..++.                    ....+++|+.++++.|.+.....                              
T Consensus       339 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~------------------------------  388 (635)
T 4g8a_A          339 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC------------------------------  388 (635)
T ss_dssp             EESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE------------------------------
T ss_pred             cccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc------------------------------
Confidence            5444321                    12234455555555554422110                              


Q ss_pred             hhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCC--hhhccCCCCceeecccCcCCCCCHHHh
Q 009119          346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAIL  423 (543)
Q Consensus       346 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~i~~~~~~~l  423 (543)
                         .........+++.+++..+....++..+..+++|+.+++.++......  ..+..+++++.++++.|.+.......+
T Consensus       389 ---~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~  465 (635)
T 4g8a_A          389 ---CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  465 (635)
T ss_dssp             ---CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             ---cccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence               001112235788888888887777777778899999999988766532  357788999999999999999888888


Q ss_pred             hCCCCCCEEEcCCCCCc-ccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCc-hhhhccCCCc
Q 009119          424 TSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLR  501 (543)
Q Consensus       424 ~~~~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~  501 (543)
                      ..+++|+.|++++|.+. .+....|..+++|++|++++|.+....+..|..+++|++|++++|+++.++ ..+..+++|+
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence            99999999999999754 455667999999999999999999988889999999999999999999875 4578899999


Q ss_pred             EEeCCCCccccc-cccccCC-CCCCeEeCCCCcCC
Q 009119          502 ILDLSQNSLQSI-PEGFKNL-TSLTELDLSDNNIS  534 (543)
Q Consensus       502 ~L~l~~~~l~~l-~~~l~~~-~~L~~L~l~~~~~~  534 (543)
                      +|++++|+++.+ |+.+..+ ++|+.|+|++|++.
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            999999999987 6778887 68999999999986

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.7e-43  Score=360.04  Aligned_cols=405  Identities=19%  Similarity=0.251  Sum_probs=285.7

Q ss_pred             cCccEEEcCccccc-cchHHhcCCCCCCEEEcCCCcCc-------------ccch---------------------hhh-
Q 009119           45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-------------ELPA---------------------AIG-   88 (543)
Q Consensus        45 ~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~l~-------------~~~~---------------------~~~-   88 (543)
                      .+++.|+|+++.+. .+|..++++++|++|++++|.+.             .+|.                     .+. 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            47999999999988 77899999999999999999651             1111                     110 


Q ss_pred             ------------------ccCCCCEEEcC--CCCCCCCChhhcccCCccEEecCCCCccc------------------cc
Q 009119           89 ------------------ELHMLKSLDVS--FNSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP  130 (543)
Q Consensus        89 ------------------~~~~L~~L~l~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~------------------~~  130 (543)
                                        ....++.+.+.  +|.++.+|..++++++|++|++++|.++.                  +|
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip  240 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT  240 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence                              00111111121  34455577777778888888888877776                  77


Q ss_pred             cccc--CCCCCCEEEccCCcCc-cCCcccccCCCccEEEecCCc-ccc--cchhhhccc------ccccEEECCCCcCCc
Q 009119          131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV--LSNNLIASW------TMLTELIASKNLLNG  198 (543)
Q Consensus       131 ~~~~--~~~~L~~L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~-i~~--~~~~~~~~~------~~L~~L~l~~~~~~~  198 (543)
                      ..+.  ++++|++|++++|.+. .+|..+..+++|++|++++|. ++.  ++.. +..+      ++|++|++++|.+..
T Consensus       241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~  319 (636)
T 4eco_A          241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKT  319 (636)
T ss_dssp             SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred             hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCc
Confidence            7777  7788888888877755 567777777888888888776 653  3332 4443      777778887777777


Q ss_pred             Cch--hccCCCcccEEEccCCccc-cCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCC-CCEEeCCCCcccccchhhhc
Q 009119          199 MPE--TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQ  274 (543)
Q Consensus       199 ~~~--~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~  274 (543)
                      +|.  .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.++.++.....
T Consensus       320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~  398 (636)
T 4eco_A          320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA  398 (636)
T ss_dssp             CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred             cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence            777  6777777778888777777 676 677777777777777777777777777777 77777777777655543322


Q ss_pred             c---eecEEEccCCCCCC-CChhhc-------CCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCccccccc
Q 009119          275 L---RLSVLDLSNNSLSG-LPPEIG-------KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST  343 (543)
Q Consensus       275 ~---~L~~L~l~~~~i~~-~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (543)
                      .   .|++|++++|.+.+ .|..+.       .+++                                            
T Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~--------------------------------------------  434 (636)
T 4eco_A          399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN--------------------------------------------  434 (636)
T ss_dssp             TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC--------------------------------------------
T ss_pred             cccCccCEEECcCCcCCCcchhhhcccccccccCCC--------------------------------------------
Confidence            2   36666666666555 333333       3334                                            


Q ss_pred             chhhHHHhhhhcccccceeeeCCCCCCCCChhhhc-cCCccEEEcCCCcCccCChhhcc--------CCCCceeecccCc
Q 009119          344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNK  414 (543)
Q Consensus       344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~l~~~~~~--------~~~L~~L~l~~~~  414 (543)
                                     ++.+++++|.++.++..++. +++|++|++++|.++.+|.....        +++|+.|++++|.
T Consensus       435 ---------------L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~  499 (636)
T 4eco_A          435 ---------------VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK  499 (636)
T ss_dssp             ---------------EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred             ---------------CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence                           45555555555556655543 67888888888888887764322        2388899999988


Q ss_pred             CCCCCHHHh-hCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEcc------CCcCCCCCCCCCCCCCcCceeecCCCcc
Q 009119          415 IKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS------YNIASLPENPPFSSLPHLQELYLRRMQL  487 (543)
Q Consensus       415 i~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~------~n~~~~~~~~~~~~~~~L~~L~l~~~~l  487 (543)
                      ++.++...+ ..+++|++|++++|++++++. .+..+++|++|+++      +|.+....+..+..+++|++|++++|++
T Consensus       500 l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CCBCCGGGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CCccChhhhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            887765543 388899999999998888654 46778889999884      5666777777888889999999999988


Q ss_pred             ccCchhhhccCCCcEEeCCCCccccc
Q 009119          488 REAPTDILRLQQLRILDLSQNSLQSI  513 (543)
Q Consensus       488 ~~l~~~~~~~~~L~~L~l~~~~l~~l  513 (543)
                      +.+|..+.  ++|+.|++++|++..+
T Consensus       579 ~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          579 RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CccCHhHh--CcCCEEECcCCCCccc
Confidence            88887755  7899999999977644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.3e-42  Score=361.10  Aligned_cols=431  Identities=19%  Similarity=0.234  Sum_probs=290.3

Q ss_pred             cCccEEEcCccccc-cchHHhcCCCCCCEEEc-CCCcCccc-c-------------------------------------
Q 009119           45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNV-SHNKLSEL-P-------------------------------------   84 (543)
Q Consensus        45 ~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l-~~~~l~~~-~-------------------------------------   84 (543)
                      .+++.|+|+++.+. .+|..++++++|++|+| ++|.+... +                                     
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            47899999999988 77889999999999999 77754311 0                                     


Q ss_pred             ---hhh-----------hccCCCCEEEcCC--CCCCCCChhhcccCCccEEecCCCCccc------------------cc
Q 009119           85 ---AAI-----------GELHMLKSLDVSF--NSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP  130 (543)
Q Consensus        85 ---~~~-----------~~~~~L~~L~l~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~------------------~~  130 (543)
                         ..+           .....++.+.+..  |.+..+|..++++++|+.|++++|.++.                  +|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence               000           0111222222222  4444577777777777777777777776                  77


Q ss_pred             cccc--CCCCCCEEEccCCcCc-cCCcccccCCCccEEEecCCc-ccc--cchhhhccc-------ccccEEECCCCcCC
Q 009119          131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV--LSNNLIASW-------TMLTELIASKNLLN  197 (543)
Q Consensus       131 ~~~~--~~~~L~~L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~-i~~--~~~~~~~~~-------~~L~~L~l~~~~~~  197 (543)
                      ..+.  ++++|++|++++|.+. .+|..+..+++|+.|++++|. +..  ++.. +..+       ++|++|++++|.+.
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC
Confidence            7766  7777777777777654 567777777777777777776 553  3322 3333       37777777777777


Q ss_pred             cCch--hccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCC-CCEEeCCCCcccccchhhhc
Q 009119          198 GMPE--TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQ  274 (543)
Q Consensus       198 ~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~  274 (543)
                      .+|.  .+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.+..++.....
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~  640 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA  640 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCT
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhc
Confidence            7776  6777777777777777777666 667777777777777777777766777776 77777777766655433222


Q ss_pred             c---eecEEEccCCCCCCCChhhc-CCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHH
Q 009119          275 L---RLSVLDLSNNSLSGLPPEIG-KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (543)
Q Consensus       275 ~---~L~~L~l~~~~i~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (543)
                      .   .|+.|++++|.+.+.++.+. ...                                                    
T Consensus       641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~----------------------------------------------------  668 (876)
T 4ecn_A          641 KSVYVMGSVDFSYNKIGSEGRNISCSMD----------------------------------------------------  668 (876)
T ss_dssp             TCSSCEEEEECCSSCTTTTSSSCSSCTT----------------------------------------------------
T ss_pred             cccCCCCEEECcCCcCCCccccchhhhc----------------------------------------------------
Confidence            1   15555555555443211110 000                                                    


Q ss_pred             hhhhcccccceeeeCCCCCCCCChhhh-ccCCccEEEcCCCcCccCChhhcc--------CCCCceeecccCcCCCCCHH
Q 009119          351 MATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPELSS--------CASLQTLILSRNKIKDWPDA  421 (543)
Q Consensus       351 ~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~~--------~~~L~~L~l~~~~i~~~~~~  421 (543)
                        ....++++.+++++|.+..+|..++ .+++|+.|++++|.++.+|..+..        +++|+.|++++|+++.++..
T Consensus       669 --~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~  746 (876)
T 4ecn_A          669 --DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD  746 (876)
T ss_dssp             --TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG
T ss_pred             --cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH
Confidence              0001346667777777777777665 578888999998888887765433        33899999999988876654


Q ss_pred             Hh-hCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC------CcCCCCCCCCCCCCCcCceeecCCCccccCchhh
Q 009119          422 IL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY------NIASLPENPPFSSLPHLQELYLRRMQLREAPTDI  494 (543)
Q Consensus       422 ~l-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~  494 (543)
                      .. ..+++|+.|+|++|++++++. .+..+++|+.|++++      |.+....+..+..+++|++|++++|.++.+|..+
T Consensus       747 l~~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l  825 (876)
T 4ecn_A          747 FRATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL  825 (876)
T ss_dssp             GSTTTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred             hhhccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh
Confidence            32 388999999999999888654 477888999998876      6677777778888999999999999888888775


Q ss_pred             hccCCCcEEeCCCCccccc-cccccCCCCCCeEeCCCCcCC
Q 009119          495 LRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS  534 (543)
Q Consensus       495 ~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~  534 (543)
                      .  ++|+.|++++|++..+ +..+.....+..+.+.+++.+
T Consensus       826 ~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          826 T--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             C--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             c--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            5  6899999999988765 233333333444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-41  Score=343.68  Aligned_cols=424  Identities=22%  Similarity=0.204  Sum_probs=324.1

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCcCcccchhh
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI   87 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~   87 (543)
                      +.+++|+++++.++.++...+..            +++|++|++++|.+..+ |..|+++++|++|++++|.+..+|.. 
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-   87 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILS------------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-   87 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTT------------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred             ccccEEECCCCcccccChhhccc------------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence            67899999999999998776665            77899999999999987 67999999999999999999998876 


Q ss_pred             hccCCCCEEEcCCCCCCC--CChhhcccCCccEEecCCCCcccccccccCCCCC--CEEEccCCcC--c-cCCcccccCC
Q 009119           88 GELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS  160 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~-~i~~~~~~~~  160 (543)
                       .+++|++|++++|.+..  +|..++.+++|++|++++|.+..  ..+..+++|  ++|++++|.+  . ..|..+..+.
T Consensus        88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B           88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence             89999999999999985  57899999999999999999876  356677788  9999999988  3 4455555554


Q ss_pred             -CccEEEecCCccc-ccchhhhcccccccEEECCCCc-------CCcCchhccCCCcccEEEccCCcccc-----CCCCC
Q 009119          161 -KMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRLDLHQNRILS-----IPSSI  226 (543)
Q Consensus       161 -~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~  226 (543)
                       +.-.+++++|.+. .+....+..++.|+.+++++|.       +......+..+++|+.|+++++.+..     ++.. 
T Consensus       165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~-  243 (520)
T 2z7x_B          165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL-  243 (520)
T ss_dssp             EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH-
T ss_pred             cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH-
Confidence             2335566666544 3444556778889999998876       32223367778889999998876652     1111 


Q ss_pred             cCCCCCcEEEcCCCCCC-CCCccc-----cCCCCCCEEeCCCCcccccchhhh-----cceecEEEccCCCCCCCChhhc
Q 009119          227 SGCCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEAC-----QLRLSVLDLSNNSLSGLPPEIG  295 (543)
Q Consensus       227 ~~~~~L~~l~l~~~~l~-~l~~~l-----~~~~~L~~L~l~~n~l~~~~~~~~-----~~~L~~L~l~~~~i~~~~~~l~  295 (543)
                      ...++|+++++++|.+. .+|..+     ..+++|+.+++++|.+ .++....     ...+++|++++|.+..++. ..
T Consensus       244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~  321 (520)
T 2z7x_B          244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS  321 (520)
T ss_dssp             HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred             hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence            12458888888888887 777777     7788888888888877 4442111     1237777777776655431 24


Q ss_pred             CCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChh
Q 009119          296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE  375 (543)
Q Consensus       296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~  375 (543)
                      .+++|++|++++|.+..                                                          .++..
T Consensus       322 ~l~~L~~L~Ls~n~l~~----------------------------------------------------------~~~~~  343 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTD----------------------------------------------------------TVFEN  343 (520)
T ss_dssp             SCCCCCEEECCSSCCCT----------------------------------------------------------TTTTT
T ss_pred             hCCcccEEEeECCccCh----------------------------------------------------------hhhhh
Confidence            55666666666665432                                                          23445


Q ss_pred             hhccCCccEEEcCCCcCcc---CChhhccCCCCceeecccCcCCC-CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCC
Q 009119          376 IWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (543)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~---l~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~  451 (543)
                      +..+++|++|++++|.++.   +|..+..+++|++|++++|.+++ ++...+..+++|++|++++|++++.....+.  +
T Consensus       344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~  421 (520)
T 2z7x_B          344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P  421 (520)
T ss_dssp             CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred             hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence            5667889999999998886   44568889999999999999988 6655678889999999999988754433332  7


Q ss_pred             CccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCcccc
Q 009119          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQS  512 (543)
Q Consensus       452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~  512 (543)
                      +|++|++++|.++.+ +..+..+++|++|++++|+++.+|.. +..+++|++|++++|++..
T Consensus       422 ~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          422 RIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             TCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            899999999988844 44455899999999999999988876 7788999999999998874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-40  Score=340.35  Aligned_cols=445  Identities=22%  Similarity=0.266  Sum_probs=292.5

Q ss_pred             ccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccc-hhhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCC
Q 009119           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN  124 (543)
Q Consensus        47 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~  124 (543)
                      .++++++++.++.+|..+.  +++++|++++|.+..++ .+|..+++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus        33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            3555555555555554333  45555555555555443 3555555555555555555543 344555555555555555


Q ss_pred             CcccccccccCCCCCCEEEccCCcCccCC--cccccCCCccEEEecCCcccccchhhhcccccc--cEEECCCCcC--Cc
Q 009119          125 QLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL--NG  198 (543)
Q Consensus       125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~i~--~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L--~~L~l~~~~~--~~  198 (543)
                      .++.+|..  .+++|++|++++|.+..++  ..+..+++|++|++++|.+....   +..+++|  ++|++++|.+  ..
T Consensus       111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~  185 (562)
T 3a79_B          111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKG  185 (562)
T ss_dssp             CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCS
T ss_pred             cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccc
Confidence            55555544  4555555555555555432  45555556666666555554322   3333333  6666666555  22


Q ss_pred             -CchhccCCC-cccEEEccCCccccC-C-CCCcCCCCCcEEEcCCCCCC-----CCCccccCCCCCCEEeCCCCcccc--
Q 009119          199 -MPETIGSLS-RLIRLDLHQNRILSI-P-SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKE--  267 (543)
Q Consensus       199 -~~~~l~~~~-~L~~L~l~~~~~~~~-~-~~~~~~~~L~~l~l~~~~l~-----~l~~~l~~~~~L~~L~l~~n~l~~--  267 (543)
                       .+..+..+. ....+++++|.+... + ..+..+++|+.+++++|...     .....+..+++|+.+++.++.+..  
T Consensus       186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~  265 (562)
T 3a79_B          186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC  265 (562)
T ss_dssp             SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred             cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence             223333222 111345555544421 1 12345667777777776422     222346677888888777766553  


Q ss_pred             ---cchhhhcceecEEEccCCCCCC-CChhh-----cCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcc
Q 009119          268 ---YCVEACQLRLSVLDLSNNSLSG-LPPEI-----GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED  338 (543)
Q Consensus       268 ---~~~~~~~~~L~~L~l~~~~i~~-~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (543)
                         ++.......+++|++++|.+.+ +|..+     .+++.|+.+++..+.+ .++..                      
T Consensus       266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~----------------------  322 (562)
T 3a79_B          266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKE----------------------  322 (562)
T ss_dssp             HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHH----------------------
T ss_pred             HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChh----------------------
Confidence               2333333469999999998884 77665     5555555555555543 22100                      


Q ss_pred             cccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCcc-CChhhccCCCCceeecccCcCCC
Q 009119          339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKD  417 (543)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~  417 (543)
                              .....  .....+++++++++.+..+.. ...+++|++|++++|.++. +|..+..+++|+.|++++|++++
T Consensus       323 --------~~~~~--~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  391 (562)
T 3a79_B          323 --------ALYSV--FAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN  391 (562)
T ss_dssp             --------HHHHH--HHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred             --------hhhhh--hccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence                    00000  012468999999998875542 2467899999999999988 67788999999999999999998


Q ss_pred             CCH--HHhhCCCCCCEEEcCCCCCcc-cCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhh
Q 009119          418 WPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI  494 (543)
Q Consensus       418 ~~~--~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~  494 (543)
                      +..  ..+.++++|++|++++|.+++ ++...+..+++|++|++++|.++...+..+.  ++|++|++++|+++.+|..+
T Consensus       392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~  469 (562)
T 3a79_B          392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDV  469 (562)
T ss_dssp             TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTT
T ss_pred             cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhh
Confidence            764  557899999999999999998 8877799999999999999998764433322  79999999999999999988


Q ss_pred             hccCCCcEEeCCCCcccccccc-ccCCCCCCeEeCCCCcCC
Q 009119          495 LRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS  534 (543)
Q Consensus       495 ~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~  534 (543)
                      ..+++|++|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus       470 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          470 THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             TSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             cCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            8999999999999999999876 899999999999999986

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8e-41  Score=344.58  Aligned_cols=413  Identities=19%  Similarity=0.268  Sum_probs=302.6

Q ss_pred             hhcCeeecCCCccc-ccchhhhhcccccCCCCccccccCccEEEcCccccc-------------cch-------------
Q 009119            9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-------------KLK-------------   61 (543)
Q Consensus         9 ~~~~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------------~l~-------------   61 (543)
                      +.++.|+++++++. .+|..+..             ++.|++|+|++|.+.             .+|             
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~-------------L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~  147 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQ-------------LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK  147 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGG-------------CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHH
T ss_pred             CCEEEEEecCcccCCcCChHHhc-------------CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHH
Confidence            46889999999987 77866643             789999999999651             000             


Q ss_pred             --------HHh-------------------cCCCCCCEEEcC--CCcCcccchhhhccCCCCEEEcCCCCCCC-------
Q 009119           62 --------EDL-------------------RNLPLLTVLNVS--HNKLSELPAAIGELHMLKSLDVSFNSIMK-------  105 (543)
Q Consensus        62 --------~~~-------------------~~~~~L~~L~l~--~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-------  105 (543)
                              ..+                   .....++.+.+.  +|.++.+|..++++++|++|++++|.++.       
T Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  227 (636)
T 4eco_A          148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW  227 (636)
T ss_dssp             HHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred             hhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccc
Confidence                    000                   011122222222  45666788899999999999999999887       


Q ss_pred             -----------CChhhc--ccCCccEEecCCCCcc-cccccccCCCCCCEEEccCCc-Ccc--CCcccccC------CCc
Q 009119          106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLADC------SKM  162 (543)
Q Consensus       106 -----------l~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--i~~~~~~~------~~L  162 (543)
                                 +|..++  ++++|++|++++|.+. .+|..+.++++|++|++++|. ++.  +|..+..+      ++|
T Consensus       228 ~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L  307 (636)
T 4eco_A          228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI  307 (636)
T ss_dssp             SCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred             cccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence                       898888  9999999999999866 788889999999999999998 774  77777665      899


Q ss_pred             cEEEecCCcccccch-hhhcccccccEEECCCCcCC-cCchhccCCCcccEEEccCCccccCCCCCcCCCC-CcEEEcCC
Q 009119          163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN  239 (543)
Q Consensus       163 ~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~  239 (543)
                      ++|++++|.+..++. ..+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++
T Consensus       308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred             CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence            999999999987765 35889999999999999997 888 888889999999999999999988999999 99999999


Q ss_pred             CCCCCCCccccCCC--CCCEEeCCCCcccccchhhhc---------ceecEEEccCCCCCCCChhh-cCCCCCceeecCC
Q 009119          240 NALSALPAELGKLS--KLGTLDLHSNQLKEYCVEACQ---------LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTG  307 (543)
Q Consensus       240 ~~l~~l~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~---------~~L~~L~l~~~~i~~~~~~l-~~~~~L~~L~l~~  307 (543)
                      |.++.+|..+...+  +|++|++++|.+....+..+.         ..|++|++++|.++.+|..+ ..+++|++|++++
T Consensus       387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred             CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence            99998888777654  899999999998764433222         35999999999999988764 4689999999999


Q ss_pred             CCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEc
Q 009119          308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL  387 (543)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l  387 (543)
                      |.+..++...+....                                                   ..+..+++|++|++
T Consensus       467 N~l~~i~~~~~~~~~---------------------------------------------------~~~~~l~~L~~L~L  495 (636)
T 4eco_A          467 NMLTEIPKNSLKDEN---------------------------------------------------ENFKNTYLLTSIDL  495 (636)
T ss_dssp             SCCSBCCSSSSEETT---------------------------------------------------EECTTGGGCCEEEC
T ss_pred             CCCCCcCHHHhcccc---------------------------------------------------ccccccCCccEEEC
Confidence            998766543332110                                                   00111235566666


Q ss_pred             CCCcCccCChhhc--cCCCCceeecccCcCCCCCHHHhhCCCCCCEEEc------CCCCCcccCCCccCCCCCccEEEcc
Q 009119          388 SRNSIQELPPELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL------DNNPLRQVPSDGFKDIPMLQILDLS  459 (543)
Q Consensus       388 ~~~~l~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L------~~n~l~~~~~~~~~~~~~L~~L~l~  459 (543)
                      ++|.++.+|..+.  .+++|+.|++++|++++++ ..+.++++|+.|++      ++|++.+.....+..+++|++|+++
T Consensus       496 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP-TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             CSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCC-CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             cCCcCCccChhhhhccCCCcCEEECCCCCCCCcC-hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence            6666655555554  5566666666666665532 23455666666666      3455555444556677777777777


Q ss_pred             CCcCCCCCCCCCCCCCcCceeecCCCccccC
Q 009119          460 YNIASLPENPPFSSLPHLQELYLRRMQLREA  490 (543)
Q Consensus       460 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l  490 (543)
                      +|.+..+ +..+.  ++|++|++++|++..+
T Consensus       575 ~N~l~~i-p~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          575 SNDIRKV-NEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SSCCCBC-CSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCcCCcc-CHhHh--CcCCEEECcCCCCccc
Confidence            7777443 33332  6778888888776643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.6e-41  Score=350.68  Aligned_cols=435  Identities=17%  Similarity=0.219  Sum_probs=317.5

Q ss_pred             hhcCeeecCCCccc-ccchhhhhcccccCCCCccccccCccEEEc-Cccccccc--------------------------
Q 009119            9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLIL-AHNNIEKL--------------------------   60 (543)
Q Consensus         9 ~~~~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~l--------------------------   60 (543)
                      +.++.|+++++++. .+|..+..             ++.|++|+| ++|.+..-                          
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~-------------L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~  389 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQ-------------LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK  389 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGG-------------CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHH
T ss_pred             CCEEEEECccCCCCCcCchHHhc-------------cccceEeeecccccccccccccccccccccchhHHHHHHHhhhh
Confidence            56889999999998 78866644             789999999 76654211                          


Q ss_pred             ---------------hHHh-----------cCCCCCCEEEcCC--CcCcccchhhhccCCCCEEEcCCCCCCC-------
Q 009119           61 ---------------KEDL-----------RNLPLLTVLNVSH--NKLSELPAAIGELHMLKSLDVSFNSIMK-------  105 (543)
Q Consensus        61 ---------------~~~~-----------~~~~~L~~L~l~~--~~l~~~~~~~~~~~~L~~L~l~~~~~~~-------  105 (543)
                                     +..+           .....++.+.+..  |.+..+|..++++++|++|++++|.+..       
T Consensus       390 ~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~  469 (876)
T 4ecn_A          390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDW  469 (876)
T ss_dssp             HHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred             hhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccc
Confidence                           0001           1112233333332  5666689999999999999999999987       


Q ss_pred             -----------CChhhc--ccCCccEEecCCCCcc-cccccccCCCCCCEEEccCCc-Ccc--CCcccccC-------CC
Q 009119          106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLADC-------SK  161 (543)
Q Consensus       106 -----------l~~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--i~~~~~~~-------~~  161 (543)
                                 +|..++  ++++|++|++++|.+. .+|..+.++++|++|++++|. ++.  +|..+..+       ++
T Consensus       470 ~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~  549 (876)
T 4ecn_A          470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK  549 (876)
T ss_dssp             SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred             cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC
Confidence                       888877  9999999999999866 788889999999999999998 774  66655544       59


Q ss_pred             ccEEEecCCcccccch-hhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCC-CcEEEcCC
Q 009119          162 MSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN  239 (543)
Q Consensus       162 L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~  239 (543)
                      |+.|++++|.+..++. ..+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++
T Consensus       550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred             ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence            9999999999997776 35899999999999999999888 889999999999999999999988999998 99999999


Q ss_pred             CCCCCCCccccCCCC--CCEEeCCCCcccccchhh-------hcceecEEEccCCCCCCCChhhc-CCCCCceeecCCCC
Q 009119          240 NALSALPAELGKLSK--LGTLDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLSGLPPEIG-KMTTLRKLLLTGNP  309 (543)
Q Consensus       240 ~~l~~l~~~l~~~~~--L~~L~l~~n~l~~~~~~~-------~~~~L~~L~l~~~~i~~~~~~l~-~~~~L~~L~l~~~~  309 (543)
                      |.+..+|..+...+.  |+.|++++|.+.......       ....|+.|++++|.+..+|..+. .+++|+.|++++|.
T Consensus       629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred             CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence            999999888777654  999999999987532211       11359999999999999887754 78999999999998


Q ss_pred             cCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCC
Q 009119          310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR  389 (543)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~  389 (543)
                      +..++...+....                                                   .....+++|+.|++++
T Consensus       709 L~~ip~~~~~~~~---------------------------------------------------~~l~nl~~L~~L~Ls~  737 (876)
T 4ecn_A          709 MTSIPENSLKPKD---------------------------------------------------GNYKNTYLLTTIDLRF  737 (876)
T ss_dssp             CSCCCTTSSSCTT---------------------------------------------------SCCTTGGGCCEEECCS
T ss_pred             CCccChHHhcccc---------------------------------------------------ccccccCCccEEECCC
Confidence            8766544332210                                                   0011233566666666


Q ss_pred             CcCccCChhhc--cCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC------CCCcccCCCccCCCCCccEEEccCC
Q 009119          390 NSIQELPPELS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN------NPLRQVPSDGFKDIPMLQILDLSYN  461 (543)
Q Consensus       390 ~~l~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~------n~l~~~~~~~~~~~~~L~~L~l~~n  461 (543)
                      |.++.+|..+.  .+++|+.|++++|.+++++ ..+.++++|+.|+|++      |.+....+..+..+++|+.|++++|
T Consensus       738 N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp-~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N  816 (876)
T 4ecn_A          738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP-TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN  816 (876)
T ss_dssp             SCCCCCCGGGSTTTCTTCCEEECCSSCCSSCC-CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             CCCccchHHhhhccCCCcCEEEeCCCCCCccc-hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence            66666665554  5666666666666666543 2345666666666654      5555555556777888888888888


Q ss_pred             cCCCCCCCCCCCCCcCceeecCCCccccCc-hhhhccCCCcEEeCCCCcccc
Q 009119          462 IASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQS  512 (543)
Q Consensus       462 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~  512 (543)
                      .+..+ +..+.  ++|+.|++++|++..+. ..+.....+..+.+.++.+..
T Consensus       817 ~L~~I-p~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          817 DIRKV-DEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             CCCBC-CSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             CCCcc-CHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            87433 33333  68888888888877543 233333344555555555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.2e-38  Score=325.13  Aligned_cols=441  Identities=20%  Similarity=0.200  Sum_probs=327.6

Q ss_pred             hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhh
Q 009119           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAI   87 (543)
Q Consensus        10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~   87 (543)
                      ..+++||++++++++|..++               +++++|++++|.+..++ ..|+++++|++|++++|.+..+ |.+|
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~---------------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~   96 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLP---------------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF   96 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSC---------------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT
T ss_pred             CCcEEEcCCCCCccCCCCCC---------------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh
Confidence            34689999999999998773               56999999999999886 6899999999999999999977 6689


Q ss_pred             hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCccccc--ccccCCCCCCEEEccCCcCccCCcccccCCCc--c
Q 009119           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM--S  163 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L--~  163 (543)
                      ..+++|++|++++|.+..+|..  .+++|++|++++|.+..++  ..+.++++|++|++++|.+...  .+..+++|  +
T Consensus        97 ~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~  172 (562)
T 3a79_B           97 LFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLS  172 (562)
T ss_dssp             TTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEE
T ss_pred             CCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceee
Confidence            9999999999999999988877  8999999999999999764  7899999999999999998853  45556666  9


Q ss_pred             EEEecCCcc--cccchhhhcccc-cccEEECCCCcCCc-Cc-hhccCCCcccEEEccCCccc-----cCCCCCcCCCCCc
Q 009119          164 KLDVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-MP-ETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLA  233 (543)
Q Consensus       164 ~L~l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~~~~-~~-~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~  233 (543)
                      .|++++|.+  .......+..+. ..-.++++.|.+.. ++ ..+..+++|+.+++++|...     .....+..+++++
T Consensus       173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~  252 (562)
T 3a79_B          173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL  252 (562)
T ss_dssp             EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred             EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence            999999988  544444344433 11145666666533 22 24566778888888887421     1222345566777


Q ss_pred             EEEcCCCCCC-----CCCccccCCCCCCEEeCCCCccc-ccchhhhc---ce---ecEEEccCCCCCCCCh-hhc---CC
Q 009119          234 EFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ---LR---LSVLDLSNNSLSGLPP-EIG---KM  297 (543)
Q Consensus       234 ~l~l~~~~l~-----~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~---~~---L~~L~l~~~~i~~~~~-~l~---~~  297 (543)
                      .+++.++.+.     .++..+ ..++|++|++++|.+. .++...+.   ..   |+.+++..+.+ .+|. .+.   ..
T Consensus       253 ~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~  330 (562)
T 3a79_B          253 NVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAE  330 (562)
T ss_dssp             EEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHT
T ss_pred             EEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhcc
Confidence            7776665544     122222 2347777777777766 44443321   22   44444444444 3442 122   23


Q ss_pred             CCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCC-CChhh
Q 009119          298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IPSEI  376 (543)
Q Consensus       298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~  376 (543)
                      .++++|++++|.+......                                     ...++++++++++|.+.. ++..+
T Consensus       331 ~~L~~L~l~~n~~~~~~~~-------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~  373 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMVCP-------------------------------------PSPSSFTFLNFTQNVFTDSVFQGC  373 (562)
T ss_dssp             CCCSEEEEESSCCCCCCCC-------------------------------------SSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             CcceEEEccCCCcccccCc-------------------------------------cCCCCceEEECCCCccccchhhhh
Confidence            5678888887766433210                                     113567888888887775 66677


Q ss_pred             hccCCccEEEcCCCcCccCC---hhhccCCCCceeecccCcCCC-CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCC
Q 009119          377 WEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM  452 (543)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  452 (543)
                      ..+++|++|++++|.++.++   ..+..+++|+.|++++|.+++ ++...+..+++|++|++++|++++.....+.  ++
T Consensus       374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~  451 (562)
T 3a79_B          374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK  451 (562)
T ss_dssp             CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred             cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence            78899999999999998765   457889999999999999988 7766788899999999999998754322232  69


Q ss_pred             ccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119          453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       453 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~  511 (543)
                      |++|++++|.++.+.. .+..+++|++|++++|+++.+|.. +..+++|+.|++++|.+.
T Consensus       452 L~~L~L~~N~l~~ip~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          452 VKVLDLHNNRIMSIPK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             CSEEECCSSCCCCCCT-TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             CCEEECCCCcCcccCh-hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            9999999999986543 345899999999999999999887 788999999999999887

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2e-38  Score=312.27  Aligned_cols=402  Identities=26%  Similarity=0.305  Sum_probs=233.0

Q ss_pred             ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCc-ccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  122 (543)
                      .+.|++|+++++.+..+|..++++++|++|++++|.+. .+|..++++.+|+.+++..|.          ..++++|+++
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~----------~~~l~~L~l~   79 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL----------DRQAHELELN   79 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH----------HHTCSEEECT
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh----------ccCCCEEEec
Confidence            45678888888888778877888888888888887766 567777766665333332221          1334566666


Q ss_pred             CCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchh
Q 009119          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (543)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (543)
                      +|.++.+|..   .++|++|++++|.++.+|..   .++|+.|++++|.+..++..    .++|++|++++|.+..+| .
T Consensus        80 ~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~  148 (454)
T 1jl5_A           80 NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-E  148 (454)
T ss_dssp             TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-C
T ss_pred             CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-c
Confidence            6665555442   24566666666666555432   25666666666665544321    146777777777776666 4


Q ss_pred             ccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEc
Q 009119          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (543)
Q Consensus       203 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  282 (543)
                      +..+++|+.|++++|.+..+|...   .+|++|++++|.++.+| .+..+++|++|++++|.+..++..  ...|++|++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l  222 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVA  222 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEEC
T ss_pred             cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC--cCcccEEEC
Confidence            667777777777777777665443   47777777777777766 467777788888887777765443  236888888


Q ss_pred             cCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhccccccee
Q 009119          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (543)
Q Consensus       283 ~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (543)
                      ++|.+..+|. +..+++|++|++++|.+..++.                                       ...+++.+
T Consensus       223 ~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~---------------------------------------~~~~L~~L  262 (454)
T 1jl5_A          223 GNNILEELPE-LQNLPFLTTIYADNNLLKTLPD---------------------------------------LPPSLEAL  262 (454)
T ss_dssp             CSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS---------------------------------------CCTTCCEE
T ss_pred             cCCcCCcccc-cCCCCCCCEEECCCCcCCcccc---------------------------------------cccccCEE
Confidence            8888877774 7788888999998887765432                                       11467788


Q ss_pred             eeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCC-CCCCEEEcCCCCCcc
Q 009119          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL-SSLSCLKLDNNPLRQ  441 (543)
Q Consensus       363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~-~~L~~L~L~~n~l~~  441 (543)
                      ++++|.+..++..   .++|++|++++|.++.+|..   .++|+.|++++|.++++.     .+ ++|++|++++|++++
T Consensus       263 ~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~  331 (454)
T 1jl5_A          263 NVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE  331 (454)
T ss_dssp             ECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC
T ss_pred             ECCCCcccccCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc
Confidence            8888887776653   36888999999888876632   267889999988887643     23 588999999988887


Q ss_pred             cCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCcccc---Cchhhhcc-------------CCCcEEeC
Q 009119          442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE---APTDILRL-------------QQLRILDL  505 (543)
Q Consensus       442 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~---l~~~~~~~-------------~~L~~L~l  505 (543)
                      ++..    +++|++|++++|.++.+..    .+++|++|++++|+++.   +|..+..+             ++|+.|++
T Consensus       332 lp~~----~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l  403 (454)
T 1jl5_A          332 LPAL----PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV  403 (454)
T ss_dssp             CCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------
T ss_pred             cccc----CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEEC
Confidence            6543    5788999999888875432    46888899999988875   45555555             67788888


Q ss_pred             CCCccccccccccCCCCCCeEeCCCCcCC
Q 009119          506 SQNSLQSIPEGFKNLTSLTELDLSDNNIS  534 (543)
Q Consensus       506 ~~~~l~~l~~~l~~~~~L~~L~l~~~~~~  534 (543)
                      ++|.++.+|..   -++++.|.+.+|.+.
T Consensus       404 s~N~l~~~~~i---P~sl~~L~~~~~~~~  429 (454)
T 1jl5_A          404 ETNPLREFPDI---PESVEDLRMNSERVV  429 (454)
T ss_dssp             -----------------------------
T ss_pred             CCCcCCccccc---hhhHhheeCcCcccC
Confidence            88777754221   124566667776654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.6e-37  Score=321.69  Aligned_cols=451  Identities=23%  Similarity=0.270  Sum_probs=299.3

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccch-h
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-A   86 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~   86 (543)
                      +++++||+++|+|+.+|...+..            +++|++|+|++|.++.++ ++|+++++|++|+|++|.+..+|. +
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~------------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  119 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA  119 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhC------------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence            46899999999999999877665            778999999999999986 579999999999999999998875 7


Q ss_pred             hhccCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCccc--ccccccCCCCCCEEEccCCcCccCC-cccccCCC-
Q 009119           87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSK-  161 (543)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~-  161 (543)
                      |.++++|++|++++|.++.++. .++++++|++|++++|.+..  +|..+..+++|++|++++|.+..++ ..+..+.+ 
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l  199 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  199 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence            8999999999999999998865 58999999999999999984  5678889999999999999988553 33433322 


Q ss_pred             ---ccEEEecCCcccccchhhhcccccccEEECCCCcCC-----------------------------------------
Q 009119          162 ---MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-----------------------------------------  197 (543)
Q Consensus       162 ---L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-----------------------------------------  197 (543)
                         ...++++.+.+..+....+.. ..++.+++.++...                                         
T Consensus       200 ~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~  278 (635)
T 4g8a_A          200 PLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  278 (635)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred             hhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence               235566666555444332221 11222222222110                                         


Q ss_pred             ------------------cCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEe
Q 009119          198 ------------------GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD  259 (543)
Q Consensus       198 ------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~  259 (543)
                                        .....+....+++.+.+.++.+..++ .+.....++.+++.++.+..++.  ..++.|+.++
T Consensus       279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~--~~l~~L~~l~  355 (635)
T 4g8a_A          279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLT  355 (635)
T ss_dssp             GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCC--CBCTTCCEEE
T ss_pred             cchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCc--ccchhhhhcc
Confidence                              00011112233444444444333321 23344556666666665554432  2345566666


Q ss_pred             CCCCcccccchhhhcceecEEEccCCCCCC---CChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCC
Q 009119          260 LHSNQLKEYCVEACQLRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN  336 (543)
Q Consensus       260 l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (543)
                      +..+.............++.+++++|.+..   .+.....+.+++.+++..+..........                  
T Consensus       356 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~------------------  417 (635)
T 4g8a_A          356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL------------------  417 (635)
T ss_dssp             EESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCT------------------
T ss_pred             cccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccc------------------
Confidence            666655544333334457777777776654   34456667777778777766544332111                  


Q ss_pred             cccccccchhhHHHhhhhcccccceeeeCCCCCCCC--ChhhhccCCccEEEcCCCcCccC-ChhhccCCCCceeecccC
Q 009119          337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI--PSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRN  413 (543)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~  413 (543)
                                        ....++.+++..+.....  ...+..+++++.++++.|.+..+ +..+..++.++.|++++|
T Consensus       418 ------------------~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N  479 (635)
T 4g8a_A          418 ------------------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  479 (635)
T ss_dssp             ------------------TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             ------------------ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence                              124556666666554422  22344567777777777777663 444666777777777777


Q ss_pred             cCC-CCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCc-
Q 009119          414 KIK-DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP-  491 (543)
Q Consensus       414 ~i~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-  491 (543)
                      .+. .+.+..|..+++|+.|+|++|+++++....|.++++|++|++++|.+..+.+.+|..+++|++|++++|+++.++ 
T Consensus       480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence            533 344455677777777777777777777677777777777777777777777667777777777777777777553 


Q ss_pred             hhhhcc-CCCcEEeCCCCccc
Q 009119          492 TDILRL-QQLRILDLSQNSLQ  511 (543)
Q Consensus       492 ~~~~~~-~~L~~L~l~~~~l~  511 (543)
                      ..+..+ ++|+.|++++|.+.
T Consensus       560 ~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          560 QELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             SCTTCCCTTCCEEECTTCCBC
T ss_pred             HHHHhhhCcCCEEEeeCCCCc
Confidence            345555 57777777777665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.1e-37  Score=307.04  Aligned_cols=392  Identities=25%  Similarity=0.265  Sum_probs=257.7

Q ss_pred             HHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccc-cchHHhcCCCCC-------------CE
Q 009119            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLL-------------TV   72 (543)
Q Consensus         7 ~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L-------------~~   72 (543)
                      ..+.++++++++++++++|.++..             +++|++|++++|.+. .+|..++.+++|             ++
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i~~-------------L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~   75 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEAEN-------------VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE   75 (454)
T ss_dssp             --------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred             ccccchhhhcccCchhhCChhHhc-------------ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCE
Confidence            357899999999999999987744             788999999999987 678888888764             89


Q ss_pred             EEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccC
Q 009119           73 LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL  152 (543)
Q Consensus        73 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i  152 (543)
                      |++++|.++.+|..   .++|++|++++|.+..+|..   .++|++|++++|.++.++...   ++|++|++++|.+..+
T Consensus        76 L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~l  146 (454)
T 1jl5_A           76 LELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKL  146 (454)
T ss_dssp             EECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSC
T ss_pred             EEecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCC
Confidence            99999988887762   36899999999988887753   478999999999888776432   6899999999988888


Q ss_pred             CcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCC
Q 009119          153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL  232 (543)
Q Consensus       153 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  232 (543)
                      | .+..+++|++|++++|.+..++..    ..+|++|++++|.+..+| .+..+++|+.|++++|.+..+|...   ++|
T Consensus       147 p-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L  217 (454)
T 1jl5_A          147 P-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSL  217 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTC
T ss_pred             c-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Ccc
Confidence            7 588889999999999888765532    358889999998888877 5788888999999888888776543   588


Q ss_pred             cEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCc
Q 009119          233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (543)
Q Consensus       233 ~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~  312 (543)
                      +++++++|.+..+|. +..+++|++|++++|.+..++..  ...+++|++++|.+.++|..   .++|++|++++|.++.
T Consensus       218 ~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          218 ESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE
T ss_pred             cEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc
Confidence            888888888887774 77888888888888888766542  24577777777777766543   2566777777766543


Q ss_pred             ccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcC
Q 009119          313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI  392 (543)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l  392 (543)
                      ++                                                           ..   .++|+.|++++|.+
T Consensus       292 l~-----------------------------------------------------------~~---~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          292 LS-----------------------------------------------------------EL---PPNLYYLNASSNEI  309 (454)
T ss_dssp             ES-----------------------------------------------------------CC---CTTCCEEECCSSCC
T ss_pred             cc-----------------------------------------------------------Cc---CCcCCEEECcCCcC
Confidence            21                                                           10   24788888888888


Q ss_pred             ccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCC--CCCCC
Q 009119          393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL--PENPP  470 (543)
Q Consensus       393 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~  470 (543)
                      +.++..   .++|+.|++++|++++++.    .+++|+.|++++|.++.++.    .+++|++|++++|.+..  ..+..
T Consensus       310 ~~i~~~---~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~  378 (454)
T 1jl5_A          310 RSLCDL---PPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPES  378 (454)
T ss_dssp             SEECCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             CcccCC---cCcCCEEECCCCccccccc----cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHH
Confidence            776531   2588999999998887653    36899999999999887765    46899999999999887  45566


Q ss_pred             CCCC-------------CcCceeecCCCccccCchhhhccCCCcEEeCCCCccc
Q 009119          471 FSSL-------------PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       471 ~~~~-------------~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~  511 (543)
                      +..+             ++|++|++++|.++.++..   -++++.|.+++|.+.
T Consensus       379 l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~  429 (454)
T 1jl5_A          379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVV  429 (454)
T ss_dssp             CCEEECCC----------------------------------------------
T ss_pred             HHhhhhcccccccccccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccC
Confidence            6665             8999999999999865332   146788888888766

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.9e-36  Score=300.13  Aligned_cols=350  Identities=22%  Similarity=0.338  Sum_probs=259.1

Q ss_pred             hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEe
Q 009119           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV  167 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l  167 (543)
                      ..+++++.|+++++.+..++. +..+++|++|++++|.+..++. +.++++|++|++++|.+..++. +..+++|++|++
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L  119 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  119 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence            456789999999998888764 7789999999999999988876 8889999999999999888765 888899999999


Q ss_pred             cCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCc
Q 009119          168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA  247 (543)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~  247 (543)
                      ++|.+..+..  +..+++|++|++++|.+..++ .+..+++|+.|++++ .+..++ .+..+++|++|++++|.+..++ 
T Consensus       120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-  193 (466)
T 1o6v_A          120 FNNQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDIS-  193 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             CCCCCCCChH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCCh-
Confidence            9988887764  778888888888888887765 377788888888864 333332 3667778888888887777664 


Q ss_pred             cccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHH
Q 009119          248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK  327 (543)
Q Consensus       248 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  327 (543)
                      .+..+++|++|++++|.+..+........|++|++++|.+..++ .+..+++|++|++++|.+.                
T Consensus       194 ~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~----------------  256 (466)
T 1o6v_A          194 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS----------------  256 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC----------------
T ss_pred             hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccc----------------
Confidence            36677777777777777766554434444666666666655543 3455555555555555442                


Q ss_pred             HHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCce
Q 009119          328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT  407 (543)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~  407 (543)
                                                                 .++. +..+++|++|++++|.++.++. +..+++|+.
T Consensus       257 -------------------------------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~  291 (466)
T 1o6v_A          257 -------------------------------------------NLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTN  291 (466)
T ss_dssp             -------------------------------------------CCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             -------------------------------------------cchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCe
Confidence                                                       2222 4456778888888888877765 677888888


Q ss_pred             eecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCcc
Q 009119          408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL  487 (543)
Q Consensus       408 L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l  487 (543)
                      |++++|+++++.+  +..+++|+.|++++|++.++..  +..+++|++|++++|.+...  ..+..+++|++|++++|++
T Consensus       292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence            8888888877655  6778888888888888776654  66778888888888877765  3567778888888888887


Q ss_pred             ccCchhhhccCCCcEEeCCCCccccccc
Q 009119          488 REAPTDILRLQQLRILDLSQNSLQSIPE  515 (543)
Q Consensus       488 ~~l~~~~~~~~~L~~L~l~~~~l~~l~~  515 (543)
                      +.++. +..+++|+.|++++|.++.+|.
T Consensus       366 ~~~~~-~~~l~~L~~L~l~~n~~~~~p~  392 (466)
T 1o6v_A          366 SDLTP-LANLTRITQLGLNDQAWTNAPV  392 (466)
T ss_dssp             CBCGG-GTTCTTCCEEECCCEEEECCCB
T ss_pred             Cccch-hhcCCCCCEEeccCCcccCCch
Confidence            76654 6777888888888887776543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.4e-35  Score=295.12  Aligned_cols=347  Identities=25%  Similarity=0.362  Sum_probs=211.9

Q ss_pred             ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (543)
                      +++++.|+++++.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus        45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  121 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence            4568888888887777753 7777888888888888777765 7778888888888887777665 77778888888888


Q ss_pred             CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc
Q 009119          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (543)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (543)
                      |.+..++. +.++++|++|++++|.+..++ .+..+++|+.|++++ .+..+..  +..+++|++|++++|.+..++ .+
T Consensus       122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l  195 (466)
T 1o6v_A          122 NQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLDISSNKVSDIS-VL  195 (466)
T ss_dssp             SCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             CCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCchh--hccCCCCCEEECcCCcCCCCh-hh
Confidence            77777654 677777777777777777664 466777777777753 2332222  555666666666666655543 24


Q ss_pred             cCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEcc
Q 009119          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS  283 (543)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  283 (543)
                      ..+++|+.|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|                      +++
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L----------------------~l~  251 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDL----------------------DLA  251 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEE----------------------ECC
T ss_pred             ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEE----------------------ECC
Confidence            455555555555555554432 344455555555555544432 24444445555                      455


Q ss_pred             CCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceee
Q 009119          284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS  363 (543)
Q Consensus       284 ~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  363 (543)
                      +|.+..++. +..+++|++|++++|.+..++                                                 
T Consensus       252 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-------------------------------------------------  281 (466)
T 1o6v_A          252 NNQISNLAP-LSGLTKLTELKLGANQISNIS-------------------------------------------------  281 (466)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEECCSSCCCCCG-------------------------------------------------
T ss_pred             CCccccchh-hhcCCCCCEEECCCCccCccc-------------------------------------------------
Confidence            554444433 556666666666666553321                                                 


Q ss_pred             eCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccC
Q 009119          364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP  443 (543)
Q Consensus       364 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~  443 (543)
                                . +..+++|++|++++|.++.++. +..+++|+.|++++|.+++..+  +..+++|+.|++++|+++++.
T Consensus       282 ----------~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~  347 (466)
T 1o6v_A          282 ----------P-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS  347 (466)
T ss_dssp             ----------G-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             ----------c-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch
Confidence                      1 2234455555555555555443 4555666666666666655544  455666666666666665542


Q ss_pred             CCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCc
Q 009119          444 SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP  491 (543)
Q Consensus       444 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  491 (543)
                        .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.++.+|
T Consensus       348 --~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          348 --SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             --GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred             --hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence              35566666666666666655433  556666666666666666544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.1e-35  Score=291.92  Aligned_cols=368  Identities=23%  Similarity=0.276  Sum_probs=229.2

Q ss_pred             CEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCcc-cc-cccccCCCCCCEEEccCC
Q 009119           71 TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLK-EL-PSSLGRCLNLSDFKASNN  147 (543)
Q Consensus        71 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~-~~-~~~~~~~~~L~~L~l~~~  147 (543)
                      +.++.+++.++.+|. +  .++|++|++++|.+..+ +..+.++++|++|++++|.+. .+ +..+.++++|++|++++|
T Consensus        13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            456677777777765 2  26788888888877754 566777888888888887775 44 355777778888888877


Q ss_pred             cCccC-CcccccCCCccEEEecCCcccc--cchhhhcccccccEEECCCCcCCcC-chh-ccCCCcccEEEccCCccccC
Q 009119          148 CITSL-PEDLADCSKMSKLDVEGNKLTV--LSNNLIASWTMLTELIASKNLLNGM-PET-IGSLSRLIRLDLHQNRILSI  222 (543)
Q Consensus       148 ~~~~i-~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~~~~~~~-~~~-l~~~~~L~~L~l~~~~~~~~  222 (543)
                      .+..+ +..+..+++|++|++++|.+..  .....+..+++|++|++++|.+..+ |.. +..+++|+.|++++|.+..+
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            77754 5667777777777777777764  2223366666777777777766554 332 56666677777766666543


Q ss_pred             C-CCCcCC--CCCcEEEcCCCCCCCCCcc---------ccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCC
Q 009119          223 P-SSISGC--CSLAEFYMGNNALSALPAE---------LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL  290 (543)
Q Consensus       223 ~-~~~~~~--~~L~~l~l~~~~l~~l~~~---------l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~  290 (543)
                      + ..+..+  .+++.++++++.+..++..         +..+++|++|++++|.+...                     .
T Consensus       170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---------------------~  228 (455)
T 3v47_A          170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES---------------------M  228 (455)
T ss_dssp             CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH---------------------H
T ss_pred             ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc---------------------c
Confidence            2 233322  4555666666555544321         12234444444444444322                     1


Q ss_pred             Chhhc---CCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCC
Q 009119          291 PPEIG---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGM  367 (543)
Q Consensus       291 ~~~l~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  367 (543)
                      +..+.   ..++++.+++++|.......                                                 ...
T Consensus       229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------------------------------------~~~  259 (455)
T 3v47_A          229 AKRFFDAIAGTKIQSLILSNSYNMGSSF-------------------------------------------------GHT  259 (455)
T ss_dssp             HHHHHHHTTTCCEEEEECTTCTTTSCCT-------------------------------------------------TCC
T ss_pred             hhhhhccccccceeeEeecccccccccc-------------------------------------------------chh
Confidence            22222   12455555555543321100                                                 000


Q ss_pred             CCCC---CChhhhccCCccEEEcCCCcCcc-CChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccC
Q 009119          368 NLSA---IPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP  443 (543)
Q Consensus       368 ~~~~---~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~  443 (543)
                      .+..   ........++|+.+++++|.++. .|..+..+++|++|++++|.++++.+..+.++++|++|++++|.++++.
T Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  339 (455)
T 3v47_A          260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID  339 (455)
T ss_dssp             SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence            0000   00001113567777787777766 4556777777888888888777777666777778888888877777776


Q ss_pred             CCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119          444 SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       444 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~  511 (543)
                      ...|..+++|++|++++|.+....+..+..+++|++|++++|+++.++.. +..+++|++|++++|++.
T Consensus       340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            66677777777777777777776666777777777777777777766553 456777777777777766

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.3e-35  Score=291.12  Aligned_cols=368  Identities=16%  Similarity=0.201  Sum_probs=295.5

Q ss_pred             ccEEEcCccccccchHHhcCCCCCCEEEcCCCcCccc-chhhhccCCCCEEEcCCCCCC-CC-ChhhcccCCccEEecCC
Q 009119           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM-KI-PDEIGSATALVKFDCSS  123 (543)
Q Consensus        47 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~-~l-~~~~~~~~~L~~L~l~~  123 (543)
                      -+.++.+++.++.+|. +.  ++|++|++++|.+..+ |.+|.++++|++|++++|.+. .+ +..+.++++|++|++++
T Consensus        12 ~~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           12 GYNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TTEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4678999999999987 33  8999999999999977 668999999999999999886 44 56789999999999999


Q ss_pred             CCcccc-cccccCCCCCCEEEccCCcCcc-CCcc--cccCCCccEEEecCCcccccchh-hhcccccccEEECCCCcCCc
Q 009119          124 NQLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELIASKNLLNG  198 (543)
Q Consensus       124 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-i~~~--~~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~~~  198 (543)
                      |.+..+ |..+.++++|++|++++|.+.. ++..  +..+++|++|++++|.+..+... .+..+++|++|++++|.+..
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            999966 6789999999999999999985 3333  88899999999999999887544 48899999999999999976


Q ss_pred             Cc-hhccCC--CcccEEEccCCccccCCCC---------CcCCCCCcEEEcCCCCCC-CCCccccC---CCCCCEEeCCC
Q 009119          199 MP-ETIGSL--SRLIRLDLHQNRILSIPSS---------ISGCCSLAEFYMGNNALS-ALPAELGK---LSKLGTLDLHS  262 (543)
Q Consensus       199 ~~-~~l~~~--~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~l~l~~~~l~-~l~~~l~~---~~~L~~L~l~~  262 (543)
                      ++ ..+..+  .+++.++++++.+..++..         +..+++|++|++++|.+. ..+..+..   .++|+.|++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            53 344444  7899999999998876532         345689999999999988 34444433   37788888887


Q ss_pred             CcccccchhhhcceecEEEccCCCCCCC-Chhhc--CCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCccc
Q 009119          263 NQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIG--KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS  339 (543)
Q Consensus       263 n~l~~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (543)
                      |........            .+.+... +..+.  ..++                                        
T Consensus       249 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~----------------------------------------  276 (455)
T 3v47_A          249 SYNMGSSFG------------HTNFKDPDNFTFKGLEASG----------------------------------------  276 (455)
T ss_dssp             CTTTSCCTT------------CCSSCCCCTTTTGGGTTSC----------------------------------------
T ss_pred             ccccccccc------------hhhhccCcccccccccccC----------------------------------------
Confidence            764422111            1111110 00111  1234                                        


Q ss_pred             ccccchhhHHHhhhhcccccceeeeCCCCCCC-CChhhhccCCccEEEcCCCcCccC-ChhhccCCCCceeecccCcCCC
Q 009119          340 EASTTKEDLITMATRLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKD  417 (543)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~~  417 (543)
                                         ++.++++++.+.. .+..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+++
T Consensus       277 -------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  337 (455)
T 3v47_A          277 -------------------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS  337 (455)
T ss_dssp             -------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             -------------------ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence                               4455555555443 344566788999999999999985 5678999999999999999999


Q ss_pred             CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119          418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (543)
Q Consensus       418 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  488 (543)
                      +.+..+.++++|++|++++|+++++...+|..+++|++|++++|.+.......+..+++|++|++++|.++
T Consensus       338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            98888999999999999999999988888999999999999999999887778899999999999999988

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.5e-35  Score=290.47  Aligned_cols=363  Identities=20%  Similarity=0.247  Sum_probs=212.5

Q ss_pred             cccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119           43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (543)
Q Consensus        43 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  122 (543)
                      ++++|++|+++++.+..+| .+..+++|++|++++|.+..++  ++.+++|++|++++|.+..++  ++.+++|++|+++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD  114 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred             HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence            3566666666666666654 4666666666666666666553  566666666666666666553  5566666666666


Q ss_pred             CCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCC-cccccchhhhcccccccEEECCCCcCCcCch
Q 009119          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIASKNLLNGMPE  201 (543)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  201 (543)
                      +|.++.++  +..+++|++|++++|.++.++  +..+++|+.|++++| .+..+   .+..+++|++|++++|.++.++ 
T Consensus       115 ~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~-  186 (457)
T 3bz5_A          115 TNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD-  186 (457)
T ss_dssp             SSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC-
T ss_pred             CCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec-
Confidence            66666553  556666666666666666552  555566666666655 23333   1444455555555555554443 


Q ss_pred             hccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEE
Q 009119          202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD  281 (543)
Q Consensus       202 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~  281 (543)
                       +..+++|+.|++++|.+..++  +..+++|+.|++++|.++.+|  +..+++|+.                      |+
T Consensus       187 -l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~----------------------L~  239 (457)
T 3bz5_A          187 -VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTY----------------------FD  239 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSE----------------------EE
T ss_pred             -cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCE----------------------EE
Confidence             444455555555555544431  344444444444444444443  344444444                      44


Q ss_pred             ccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccce
Q 009119          282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE  361 (543)
Q Consensus       282 l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  361 (543)
                      +++|.+++++  ...+++|+.++++.+.+                                                 +.
T Consensus       240 l~~N~l~~~~--~~~l~~L~~L~l~~n~L-------------------------------------------------~~  268 (457)
T 3bz5_A          240 CSVNPLTELD--VSTLSKLTTLHCIQTDL-------------------------------------------------LE  268 (457)
T ss_dssp             CCSSCCSCCC--CTTCTTCCEEECTTCCC-------------------------------------------------SC
T ss_pred             eeCCcCCCcC--HHHCCCCCEEeccCCCC-------------------------------------------------CE
Confidence            4444444443  34455666666655533                                                 33


Q ss_pred             eeeCCCCCC-CCChhhhccCCccEEEcCCCcCc-cCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCC
Q 009119          362 LSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL  439 (543)
Q Consensus       362 l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l  439 (543)
                      +++++|... .++  .+.+++|+.|++++|... .+|.   ..++|+.|+++             ++++|++|++++|++
T Consensus       269 L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~-------------~~~~L~~L~L~~N~l  330 (457)
T 3bz5_A          269 IDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS-------------QNPKLVYLYLNNTEL  330 (457)
T ss_dssp             CCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT-------------TCTTCCEEECTTCCC
T ss_pred             EECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh-------------hcccCCEEECCCCcc
Confidence            444444322 222  234677788888877643 2442   33455555544             447889999999988


Q ss_pred             cccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccc-ccccc-c
Q 009119          440 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEG-F  517 (543)
Q Consensus       440 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~-~l~~~-l  517 (543)
                      ++++   +..+++|+.|++++|.+++        ++.|..|.+++|.+...    ..+..|+.+++++|+++ .+|.. +
T Consensus       331 ~~l~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          331 TELD---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             SCCC---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             cccc---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec----ceeeecCccccccCcEEEEcChhHh
Confidence            8863   7788899999999888765        35677778888877754    24567888889998887 56643 3


Q ss_pred             cCCCCCCeEeCC
Q 009119          518 KNLTSLTELDLS  529 (543)
Q Consensus       518 ~~~~~L~~L~l~  529 (543)
                      ....+.......
T Consensus       396 ~~~~~~~~~~~~  407 (457)
T 3bz5_A          396 DQFGNPMNIEPG  407 (457)
T ss_dssp             CTTSCCCEEEES
T ss_pred             cccCceeeccCC
Confidence            334444444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.1e-34  Score=280.15  Aligned_cols=259  Identities=27%  Similarity=0.355  Sum_probs=225.6

Q ss_pred             HHHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccc
Q 009119            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (543)
Q Consensus         5 ~~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~   84 (543)
                      +...+.+++|+++++.++.+| .+ ..            +++|++|++++|.++.++  +..+++|++|++++|.+..++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~-~l-~~------------l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~  101 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT-GI-EK------------LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD  101 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT-TG-GG------------CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             hhHcCCCCEEEccCCCcccCh-hh-cc------------cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence            456789999999999999987 33 22            788999999999999985  999999999999999999884


Q ss_pred             hhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCc-CccCCcccccCCCcc
Q 009119           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMS  163 (543)
Q Consensus        85 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~i~~~~~~~~~L~  163 (543)
                        ++.+++|++|++++|.+..++  +..+++|++|++++|.++.++  +..+++|++|++++|. +..+  .+..+++|+
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence              889999999999999999875  889999999999999999874  7889999999999994 4455  578899999


Q ss_pred             EEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC
Q 009119          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (543)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  243 (543)
                      .|++++|.+..++   +..+++|++|++++|.+..++  +..+++|+.|++++|.+..+|  +..+++|+.|++++|.++
T Consensus       174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred             EEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence            9999999999876   778899999999999998874  788999999999999999987  788999999999999999


Q ss_pred             CCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCC-CChhhcCCCCCceeecCCCCc
Q 009119          244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL  310 (543)
Q Consensus       244 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~~~~~  310 (543)
                      .++  +..+++|+.|+++.+.+            +.+++++|...+ +|  ++.+++|+.|++++|..
T Consensus       247 ~~~--~~~l~~L~~L~l~~n~L------------~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          247 ELD--VSTLSKLTTLHCIQTDL------------LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             CCC--CTTCTTCCEEECTTCCC------------SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred             CcC--HHHCCCCCEEeccCCCC------------CEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence            876  56789999999887754            566777776554 43  46788999999998864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.5e-32  Score=263.06  Aligned_cols=306  Identities=19%  Similarity=0.335  Sum_probs=163.7

Q ss_pred             hcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEE
Q 009119           64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK  143 (543)
Q Consensus        64 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  143 (543)
                      +..+++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+.++++|++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~  116 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY  116 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred             chhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence            345566677777766666654 36666666666666666666554 666666666666666666553 355556666666


Q ss_pred             ccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCC
Q 009119          144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP  223 (543)
Q Consensus       144 l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  223 (543)
                      +++|.+..++. +..+++|+.|++++|.                        .......+..+++|+.|++++|.+..++
T Consensus       117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~  171 (347)
T 4fmz_A          117 LNEDNISDISP-LANLTKMYSLNLGANH------------------------NLSDLSPLSNMTGLNYLTVTESKVKDVT  171 (347)
T ss_dssp             CTTSCCCCCGG-GTTCTTCCEEECTTCT------------------------TCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             CcCCcccCchh-hccCCceeEEECCCCC------------------------CcccccchhhCCCCcEEEecCCCcCCch
Confidence            66665555443 4455555555555542                        2222222444455555555555444433


Q ss_pred             CCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCcee
Q 009119          224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKL  303 (543)
Q Consensus       224 ~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L  303 (543)
                      . +..+++|+++++++|.+..++. +..+++|+.+++++|.+..+........|++|++++|.++.++. +..+++|++|
T Consensus       172 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  248 (347)
T 4fmz_A          172 P-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWL  248 (347)
T ss_dssp             G-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             h-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEE
Confidence            2 4445555555555555554433 45555555555555555544332222234444444444444433 4455555555


Q ss_pred             ecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCcc
Q 009119          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT  383 (543)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~  383 (543)
                      ++++|.+..+                                                            ..+..+++|+
T Consensus       249 ~l~~n~l~~~------------------------------------------------------------~~~~~l~~L~  268 (347)
T 4fmz_A          249 EIGTNQISDI------------------------------------------------------------NAVKDLTKLK  268 (347)
T ss_dssp             ECCSSCCCCC------------------------------------------------------------GGGTTCTTCC
T ss_pred             ECCCCccCCC------------------------------------------------------------hhHhcCCCcC
Confidence            5555543221                                                            1223345566


Q ss_pred             EEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcC
Q 009119          384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA  463 (543)
Q Consensus       384 ~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  463 (543)
                      +|++++|.+++++ .+..+++|+.|++++|.+++..+..+.++++|++|++++|+++++..  +..+++|++|++++|.+
T Consensus       269 ~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          269 MLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             EEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence            6666666655553 35556666666666666665555555666666666666666555443  44555555555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.2e-32  Score=261.88  Aligned_cols=304  Identities=23%  Similarity=0.341  Sum_probs=234.4

Q ss_pred             cccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecC
Q 009119           43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (543)
Q Consensus        43 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  122 (543)
                      ++++|++|+++++.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN  118 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred             hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence            47889999999999998864 8889999999999999998876 889999999999999988875 68899999999999


Q ss_pred             CCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchh
Q 009119          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (543)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (543)
                      +|.+..++. +..+++|++|++++|........+..+++|++|++++|.+..+..  +..+++|++|++++|.+..++. 
T Consensus       119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-  194 (347)
T 4fmz_A          119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-  194 (347)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-
T ss_pred             CCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-
Confidence            999998876 889999999999999666555568889999999999998877665  7778888888888888877765 


Q ss_pred             ccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEc
Q 009119          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (543)
Q Consensus       203 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  282 (543)
                      +..+++|+.+++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++             
T Consensus       195 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-------------  259 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-------------  259 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-------------
T ss_pred             ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-------------
Confidence            6677788888888877776544 6667777777777777776655 666777777777766665432             


Q ss_pred             cCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhccccccee
Q 009119          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (543)
Q Consensus       283 ~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (543)
                                .+..+++|++|++++|.+..+                                                 
T Consensus       260 ----------~~~~l~~L~~L~l~~n~l~~~-------------------------------------------------  280 (347)
T 4fmz_A          260 ----------AVKDLTKLKMLNVGSNQISDI-------------------------------------------------  280 (347)
T ss_dssp             ----------GGTTCTTCCEEECCSSCCCCC-------------------------------------------------
T ss_pred             ----------hHhcCCCcCEEEccCCccCCC-------------------------------------------------
Confidence                      355666777777777655322                                                 


Q ss_pred             eeCCCCCCCCChhhhccCCccEEEcCCCcCccC-ChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCc
Q 009119          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (543)
Q Consensus       363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~  440 (543)
                                 ..+..+++|++|++++|.++.. +..+..+++|+.|++++|++++..+  +..+++|++|++++|+++
T Consensus       281 -----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          281 -----------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -----------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             -----------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence                       1233456777777777777653 4456777888888888888777665  677888888888888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-31  Score=260.86  Aligned_cols=305  Identities=23%  Similarity=0.257  Sum_probs=176.0

Q ss_pred             CCCCCEEEccCCcCccCCcc-cccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCch-hccCCCcccEEE
Q 009119          136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLD  213 (543)
Q Consensus       136 ~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~  213 (543)
                      +.+++.++++++.+..+|.. +..+++|++|++++|.+..+....+..+++|++|++++|.+..++. .+..+++|+.|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45666666666666666544 4556666666666666666665556666666666666666655533 355666666666


Q ss_pred             ccCCccccCCCC-CcCCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCC
Q 009119          214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP  291 (543)
Q Consensus       214 l~~~~~~~~~~~-~~~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~  291 (543)
                      +++|.+..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.++.++                      
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------  181 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----------------------  181 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----------------------
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----------------------
Confidence            666666655544 355666666666666665442 34555666666666665554332                      


Q ss_pred             hhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCC
Q 009119          292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA  371 (543)
Q Consensus       292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  371 (543)
                        +..+++|+.+++++|.+..++                                                         
T Consensus       182 --~~~l~~L~~L~l~~n~l~~~~---------------------------------------------------------  202 (390)
T 3o6n_A          182 --LSLIPSLFHANVSYNLLSTLA---------------------------------------------------------  202 (390)
T ss_dssp             --GGGCTTCSEEECCSSCCSEEE---------------------------------------------------------
T ss_pred             --cccccccceeecccccccccC---------------------------------------------------------
Confidence              334455555665555443221                                                         


Q ss_pred             CChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCC
Q 009119          372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (543)
Q Consensus       372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~  451 (543)
                            ..++|++|++++|.++.+|..  ..++|+.|++++|.+++.  ..+..+++|++|++++|.+.++....|..++
T Consensus       203 ------~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (390)
T 3o6n_A          203 ------IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  272 (390)
T ss_dssp             ------CCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             ------CCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence                  112455555555555554322  234566666666655554  2345566666666666666655555556666


Q ss_pred             CccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCC
Q 009119          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN  531 (543)
Q Consensus       452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~  531 (543)
                      +|++|++++|.+... +..+..+++|++|++++|+++.+|..+..+++|++|++++|.++.++  +..+++|+.|++++|
T Consensus       273 ~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          273 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             SCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred             cCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence            666666666655543 22234556666666666666666655666666666666666666553  455666666666666


Q ss_pred             cCC
Q 009119          532 NIS  534 (543)
Q Consensus       532 ~~~  534 (543)
                      ++.
T Consensus       350 ~~~  352 (390)
T 3o6n_A          350 DWD  352 (390)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=267.70  Aligned_cols=109  Identities=25%  Similarity=0.315  Sum_probs=69.3

Q ss_pred             CCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEc
Q 009119          380 GEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (543)
Q Consensus       380 ~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  458 (543)
                      .+|++|++++|.++.+|. .+..+++|+.|++++|.++++....+.++++|+.|++++|++.++...+|..+++|++|++
T Consensus       224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  303 (477)
T 2id5_A          224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV  303 (477)
T ss_dssp             CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred             ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence            456666666666666653 4556666666666666666666555666666666666666666665555666666666666


Q ss_pred             cCCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119          459 SYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (543)
Q Consensus       459 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  488 (543)
                      ++|.++......|..+++|++|++++|.+.
T Consensus       304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          304 SGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            666666655555666666666666666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-31  Score=267.34  Aligned_cols=106  Identities=24%  Similarity=0.257  Sum_probs=65.7

Q ss_pred             cceeeeCCCCCCCCCh-hhhccCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119          359 SKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (543)
Q Consensus       359 l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~  436 (543)
                      ++.+++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|+++++.+..|.++++|+.|++++
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG  305 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred             ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence            4444444444444442 34455666777777666666432 356666677777777766666666666667777777777


Q ss_pred             CCCcccCCCccCCCCCccEEEccCCcCC
Q 009119          437 NPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (543)
Q Consensus       437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~  464 (543)
                      |.++.++...|..+++|++|++++|.+.
T Consensus       306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          306 NQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             SCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            7666666666666667777777666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=8.9e-31  Score=254.66  Aligned_cols=172  Identities=20%  Similarity=0.305  Sum_probs=104.0

Q ss_pred             ccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCCCCC-hhhcccCCccEEe
Q 009119           44 AVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFD  120 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~  120 (543)
                      .++++.|+++++.+..+|. .|..+++|++|++++|.+..++. +|..+++|++|++++|.+..++ ..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            4567777777777776664 45667777777777777666543 6667777777777777766553 3466677777777


Q ss_pred             cCCCCccccccc-ccCCCCCCEEEccCCcCccCC-cccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCc
Q 009119          121 CSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG  198 (543)
Q Consensus       121 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~  198 (543)
                      +++|.+..+|.. +.++++|++|++++|.+..++ ..+..+++|++|++++|.+..+.   +..++.|+.+++++|.+..
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc
Confidence            777776666644 356666666666666666543 34556666666666666655543   3344555555555554433


Q ss_pred             CchhccCCCcccEEEccCCccccC
Q 009119          199 MPETIGSLSRLIRLDLHQNRILSI  222 (543)
Q Consensus       199 ~~~~l~~~~~L~~L~l~~~~~~~~  222 (543)
                      ++    ..+.|+.|++++|.+..+
T Consensus       201 ~~----~~~~L~~L~l~~n~l~~~  220 (390)
T 3o6n_A          201 LA----IPIAVEELDASHNSINVV  220 (390)
T ss_dssp             EE----CCSSCSEEECCSSCCCEE
T ss_pred             cC----CCCcceEEECCCCeeeec
Confidence            32    223444445544444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=1.8e-30  Score=266.16  Aligned_cols=305  Identities=23%  Similarity=0.261  Sum_probs=170.6

Q ss_pred             CCCCCEEEccCCcCccCCcc-cccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCch-hccCCCcccEEE
Q 009119          136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLD  213 (543)
Q Consensus       136 ~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~  213 (543)
                      +.+++.++++++.+..+|.. +..+++|+.|++++|.+..+....+..+++|++|++++|.+..++. .+..+++|+.|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            34666666666666655543 4556666666666666666555556666666666666666655443 345566666666


Q ss_pred             ccCCccccCCCC-CcCCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCC
Q 009119          214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP  291 (543)
Q Consensus       214 l~~~~~~~~~~~-~~~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~  291 (543)
                      +++|.+..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++                      
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------  187 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----------------------  187 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------------------
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------------------
Confidence            666666555543 355566666666666555433 24555555666655555554332                      


Q ss_pred             hhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCC
Q 009119          292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA  371 (543)
Q Consensus       292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  371 (543)
                        +..+++|+.+++++|.+..++                                                         
T Consensus       188 --~~~l~~L~~L~l~~n~l~~l~---------------------------------------------------------  208 (597)
T 3oja_B          188 --LSLIPSLFHANVSYNLLSTLA---------------------------------------------------------  208 (597)
T ss_dssp             --GGGCTTCSEEECCSSCCSEEE---------------------------------------------------------
T ss_pred             --hhhhhhhhhhhcccCcccccc---------------------------------------------------------
Confidence              233445555555555443221                                                         


Q ss_pred             CChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCC
Q 009119          372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (543)
Q Consensus       372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~  451 (543)
                            ..++|+.|++++|.++.++..+  .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.++....|..++
T Consensus       209 ------~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          209 ------IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             ------CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             ------CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence                  1224555555555555443221  24556666666655553  2345566666666666666555555555666


Q ss_pred             CccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCC
Q 009119          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN  531 (543)
Q Consensus       452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~  531 (543)
                      +|+.|++++|.+..+ +..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+..++  +..+++|+.|++++|
T Consensus       279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN  355 (597)
T ss_dssp             SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred             CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence            666666666655543 22334556666666666666666666666666666666666666553  455666666666666


Q ss_pred             cCC
Q 009119          532 NIS  534 (543)
Q Consensus       532 ~~~  534 (543)
                      ++.
T Consensus       356 ~~~  358 (597)
T 3oja_B          356 DWD  358 (597)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.5e-29  Score=238.63  Aligned_cols=287  Identities=23%  Similarity=0.286  Sum_probs=219.7

Q ss_pred             ccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCC
Q 009119          184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH  261 (543)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~  261 (543)
                      ..++.++++++.+..+|..+.  +.++.|++++|.+..++. .+..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            356677777777666665443  567777887777776654 567777888888888877755 6677778888888888


Q ss_pred             CCcccccchhhhcceecEEEccCCCCCCCCh-hhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccc
Q 009119          262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE  340 (543)
Q Consensus       262 ~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (543)
                      +|.++.++...+ ..|++|++++|.+..++. .+.++++|++|++++|.+...+                          
T Consensus       109 ~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------  161 (330)
T 1xku_A          109 KNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG--------------------------  161 (330)
T ss_dssp             SSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG--------------------------
T ss_pred             CCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC--------------------------
Confidence            887776665544 468888888887777544 4788889999998888764321                          


Q ss_pred             cccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCH
Q 009119          341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD  420 (543)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~  420 (543)
                                                    ..+..+..+++|++|++++|.++.+|..+.  ++|++|++++|.++++.+
T Consensus       162 ------------------------------~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~  209 (330)
T 1xku_A          162 ------------------------------IENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDA  209 (330)
T ss_dssp             ------------------------------BCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECT
T ss_pred             ------------------------------cChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCH
Confidence                                          122345567889999999999888886543  789999999999998888


Q ss_pred             HHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhh-----
Q 009119          421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-----  495 (543)
Q Consensus       421 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~-----  495 (543)
                      ..+.++++|++|++++|.++++....+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++....     
T Consensus       210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~  288 (330)
T 1xku_A          210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY  288 (330)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred             HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence            8889999999999999999988877788899999999999988744 4567889999999999999997765432     


Q ss_pred             --ccCCCcEEeCCCCcccc--c-cccccCCCCCCeEeCCCCc
Q 009119          496 --RLQQLRILDLSQNSLQS--I-PEGFKNLTSLTELDLSDNN  532 (543)
Q Consensus       496 --~~~~L~~L~l~~~~l~~--l-~~~l~~~~~L~~L~l~~~~  532 (543)
                        ..+.++.|++++|.+..  + |..+..+++++.+++++|+
T Consensus       289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence              24789999999999873  4 6778999999999999985

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.5e-29  Score=259.24  Aligned_cols=304  Identities=22%  Similarity=0.289  Sum_probs=166.8

Q ss_pred             ccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCCCCCh-hhcccCCccEEe
Q 009119           44 AVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFD  120 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~  120 (543)
                      +++++.++++++.+..+|. .|.++++|+.|++++|.+..++. +|..+++|++|++++|.+..++. .++++++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            4556666776666666653 45666677777777666665543 66666667777776666665543 356666666666


Q ss_pred             cCCCCccccccc-ccCCCCCCEEEccCCcCccCC-cccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCc
Q 009119          121 CSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG  198 (543)
Q Consensus       121 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~  198 (543)
                      +++|.++.+|.. +.++++|++|++++|.+..++ ..+..+++|+.|++++|.+..++   +..++.|+.+++++|.+..
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence            666666666543 356666666666666666443 34556666666666666655443   3344555555555554433


Q ss_pred             CchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceec
Q 009119          199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS  278 (543)
Q Consensus       199 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~  278 (543)
                      ++    ..+.|+.|++++|.+..++..+  .++|+.|++++|.++.. ..+..+++|+.|++++|.+..+          
T Consensus       207 l~----~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~----------  269 (597)
T 3oja_B          207 LA----IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI----------  269 (597)
T ss_dssp             EE----CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE----------
T ss_pred             cc----CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCC----------
Confidence            22    2234555555555444333222  13444444444444332 2333334444444433333222          


Q ss_pred             EEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccc
Q 009119          279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT  358 (543)
Q Consensus       279 ~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (543)
                                 .|..+..+++|+.|++++|.+..++                                            
T Consensus       270 -----------~~~~~~~l~~L~~L~Ls~N~l~~l~--------------------------------------------  294 (597)
T 3oja_B          270 -----------MYHPFVKMQRLERLYISNNRLVALN--------------------------------------------  294 (597)
T ss_dssp             -----------ESGGGTTCSSCCEEECTTSCCCEEE--------------------------------------------
T ss_pred             -----------CHHHhcCccCCCEEECCCCCCCCCC--------------------------------------------
Confidence                       2334555566666666665543322                                            


Q ss_pred             cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCC
Q 009119          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP  438 (543)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~  438 (543)
                                     ..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+.   +..+++|+.|++++|+
T Consensus       295 ---------------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          295 ---------------LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             ---------------CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC
T ss_pred             ---------------cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCC
Confidence                           1222345566666666666666665666666666666666666554   3555666666666666


Q ss_pred             Cc
Q 009119          439 LR  440 (543)
Q Consensus       439 l~  440 (543)
                      +.
T Consensus       357 ~~  358 (597)
T 3oja_B          357 WD  358 (597)
T ss_dssp             EE
T ss_pred             CC
Confidence            54

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.6e-29  Score=237.50  Aligned_cols=280  Identities=22%  Similarity=0.298  Sum_probs=241.2

Q ss_pred             hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCccc-chhh
Q 009119           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI   87 (543)
Q Consensus        10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~-~~~~   87 (543)
                      .++.++|++++++++|..+.               +.+++|++++|.++.++. .|+++++|++|++++|.+..+ |.+|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF   96 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCeEEEecCCCccccCccCC---------------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence            67899999999999998763               569999999999998864 799999999999999999977 7799


Q ss_pred             hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCc---cCCcccccCCCcc
Q 009119           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~---~i~~~~~~~~~L~  163 (543)
                      ..+++|++|++++|.++.+|..+.  ++|++|++++|.+..++ ..+.++++|++|++++|.+.   ..+..+..+++|+
T Consensus        97 ~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A           97 APLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             cCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            999999999999999998887664  79999999999999776 45889999999999999986   3456788999999


Q ss_pred             EEEecCCcccccchhhhcccccccEEECCCCcCCcC-chhccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCC
Q 009119          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA  241 (543)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~  241 (543)
                      .|++++|.+..++....   ++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|++|++++|.
T Consensus       175 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          175 YIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             EEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             EEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence            99999999988765432   7899999999999776 5678899999999999999987654 68889999999999999


Q ss_pred             CCCCCccccCCCCCCEEeCCCCcccccchhhhc--------ceecEEEccCCCCCC---CChhhcCCCCCceeecCCCC
Q 009119          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNP  309 (543)
Q Consensus       242 l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--------~~L~~L~l~~~~i~~---~~~~l~~~~~L~~L~l~~~~  309 (543)
                      ++.+|..+..+++|++|++++|.++.++...+.        ..++.+++++|.+..   .|..+..+.+++.+++++|+
T Consensus       252 l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            999999999999999999999999988776553        348899999998875   34568888999999998873

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.9e-29  Score=239.48  Aligned_cols=286  Identities=22%  Similarity=0.297  Sum_probs=212.2

Q ss_pred             ccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCC-CCCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCC
Q 009119          184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH  261 (543)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~  261 (543)
                      ..++.++++++.+..+|..+.  ++++.|++++|.+..++ ..+..+++|++|++++|.++.+ |..+..+++|++|+++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            357778888887777776553  67888888888888664 4678888888888888888855 6678888888888888


Q ss_pred             CCcccccchhhhcceecEEEccCCCCCCCCh-hhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccc
Q 009119          262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE  340 (543)
Q Consensus       262 ~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (543)
                      +|.++.++...+ ..|++|++++|.+..++. .+..+++|++|++++|.+...+.                         
T Consensus       111 ~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------  164 (332)
T 2ft3_A          111 KNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF-------------------------  164 (332)
T ss_dssp             SSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-------------------------
T ss_pred             CCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC-------------------------
Confidence            888887776555 568888888888888665 47889999999999987743210                         


Q ss_pred             cccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCH
Q 009119          341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD  420 (543)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~  420 (543)
                                                     .+..+... +|++|++++|.++.+|..+.  ++|++|++++|.++++.+
T Consensus       165 -------------------------------~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~  210 (332)
T 2ft3_A          165 -------------------------------EPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIEL  210 (332)
T ss_dssp             -------------------------------CTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCT
T ss_pred             -------------------------------CcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCH
Confidence                                           11112222 67777777777777775443  678888888888887777


Q ss_pred             HHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhc---
Q 009119          421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILR---  496 (543)
Q Consensus       421 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~---  496 (543)
                      ..+..+++|++|++++|++.++....+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++.. +..   
T Consensus       211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  289 (332)
T 2ft3_A          211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF  289 (332)
T ss_dssp             TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred             HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence            7777888888888888888877776778888888888888877743 44577788888888888888866543 222   


Q ss_pred             ---cCCCcEEeCCCCccc--cc-cccccCCCCCCeEeCCCCc
Q 009119          497 ---LQQLRILDLSQNSLQ--SI-PEGFKNLTSLTELDLSDNN  532 (543)
Q Consensus       497 ---~~~L~~L~l~~~~l~--~l-~~~l~~~~~L~~L~l~~~~  532 (543)
                         .+.|+.|++++|.+.  .+ |..+..+++|+.+++++|+
T Consensus       290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence               467899999999877  44 6778899999999999885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=5e-31  Score=262.96  Aligned_cols=289  Identities=18%  Similarity=0.210  Sum_probs=203.5

Q ss_pred             hhcCeeecCCCcccccchh-hhhcccccCCCCccccccCccEEEcCccccc-----cchHHhcCCCCCCEEEcCCCcCcc
Q 009119            9 RTSGSLNLSNRSLRDVPNE-VYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE   82 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~~   82 (543)
                      +.+++||++++++++.+.. ++..            +++|++|++++|.+.     .++..+..+++|++|++++|.+.+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~------------~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~   70 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   70 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             ccceehhhhhcccCchhHHHHHhh------------cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence            4678899999998865533 2443            678999999999988     456788899999999999998874


Q ss_pred             c-chh-hhccC----CCCEEEcCCCCCC-----CCChhhcccCCccEEecCCCCcccc-----ccc-ccCCCCCCEEEcc
Q 009119           83 L-PAA-IGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKEL-----PSS-LGRCLNLSDFKAS  145 (543)
Q Consensus        83 ~-~~~-~~~~~----~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~-----~~~-~~~~~~L~~L~l~  145 (543)
                      . +.. +..++    +|++|++++|.+.     .++..+..+++|++|++++|.+...     ... ....++|++|+++
T Consensus        71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  150 (461)
T 1z7x_W           71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE  150 (461)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence            2 223 33344    6999999999887     3467788899999999999988732     112 2235689999999


Q ss_pred             CCcCcc-----CCcccccCCCccEEEecCCcccccchhhhc-----ccccccEEECCCCcCCc-----CchhccCCCccc
Q 009119          146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI  210 (543)
Q Consensus       146 ~~~~~~-----i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~  210 (543)
                      +|.++.     ++..+..+++|++|++++|.+.......+.     ..++|++|++++|.+..     ++..+..+++|+
T Consensus       151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  230 (461)
T 1z7x_W          151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  230 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence            998874     355677789999999999988755444333     25589999999998865     466677788999


Q ss_pred             EEEccCCccccC------CCCCcCCCCCcEEEcCCCCCCC-----CCccccCCCCCCEEeCCCCcccccchhhhc-----
Q 009119          211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEACQ-----  274 (543)
Q Consensus       211 ~L~l~~~~~~~~------~~~~~~~~~L~~l~l~~~~l~~-----l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----  274 (543)
                      .|++++|.+...      +..+..+++|++|++++|.++.     ++..+..+++|++|++++|.+++.......     
T Consensus       231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  310 (461)
T 1z7x_W          231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE  310 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred             EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence            999999877632      1222357888888888888885     566777788888888888887643332211     


Q ss_pred             --ceecEEEccCCCCCC-----CChhhcCCCCCceeecCCCC
Q 009119          275 --LRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNP  309 (543)
Q Consensus       275 --~~L~~L~l~~~~i~~-----~~~~l~~~~~L~~L~l~~~~  309 (543)
                        ..|++|++++|.++.     ++..+..+++|++|++++|.
T Consensus       311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR  352 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred             CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence              235555555554443     12233344444444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.4e-32  Score=274.24  Aligned_cols=368  Identities=20%  Similarity=0.203  Sum_probs=200.4

Q ss_pred             CCCCEEEcCCCCCCCC--ChhhcccCCccEEecCCCCcc-----cccccccCCCCCCEEEccCCcCccCCcccccCCCcc
Q 009119           91 HMLKSLDVSFNSIMKI--PDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS  163 (543)
Q Consensus        91 ~~L~~L~l~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~  163 (543)
                      ++|++|+++++.++..  ...+..+++|++|++++|.+.     .++..+..+++|++|++++|.+.             
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-------------   69 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-------------   69 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-------------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC-------------
Confidence            3456666666655522  122455566666666666555     23344444555555555555443             


Q ss_pred             EEEecCCcccccchhhh-cccc----cccEEECCCCcCC-----cCchhccCCCcccEEEccCCccccC-----CCC-Cc
Q 009119          164 KLDVEGNKLTVLSNNLI-ASWT----MLTELIASKNLLN-----GMPETIGSLSRLIRLDLHQNRILSI-----PSS-IS  227 (543)
Q Consensus       164 ~L~l~~~~i~~~~~~~~-~~~~----~L~~L~l~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~-----~~~-~~  227 (543)
                                ......+ ..++    +|++|++++|.+.     .++..+..+++|+.|++++|.+...     ... ..
T Consensus        70 ----------~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  139 (461)
T 1z7x_W           70 ----------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD  139 (461)
T ss_dssp             ----------HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             ----------hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence                      2221111 1122    3555555555443     2344555566666666666655421     011 12


Q ss_pred             CCCCCcEEEcCCCCCCC-----CCccccCCCCCCEEeCCCCcccccchhhh-------cceecEEEccCCCCCC-----C
Q 009119          228 GCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----L  290 (543)
Q Consensus       228 ~~~~L~~l~l~~~~l~~-----l~~~l~~~~~L~~L~l~~n~l~~~~~~~~-------~~~L~~L~l~~~~i~~-----~  290 (543)
                      ..++|++|++++|.++.     ++..+..+++|++|++++|.+.+......       ...|++|++++|.++.     +
T Consensus       140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  219 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  219 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence            24567777777776663     34456667888888888888765433322       2258888888887776     3


Q ss_pred             ChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCC
Q 009119          291 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS  370 (543)
Q Consensus       291 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  370 (543)
                      +..+..+++|++|++++|.+......                              ......                  
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~------------------------------~l~~~~------------------  251 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMA------------------------------ELCPGL------------------  251 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHH------------------------------HHHHHH------------------
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHH------------------------------HHHHHH------------------
Confidence            55677788888888888876332100                              000000                  


Q ss_pred             CCChhhhccCCccEEEcCCCcCcc-----CChhhccCCCCceeecccCcCCCCCHHHhhC-----CCCCCEEEcCCCCCc
Q 009119          371 AIPSEIWEAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPDAILTS-----LSSLSCLKLDNNPLR  440 (543)
Q Consensus       371 ~~~~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~-----~~~L~~L~L~~n~l~  440 (543)
                           ...+++|++|++++|.++.     ++..+..+++|++|++++|.+++.....+..     .++|++|++++|.++
T Consensus       252 -----~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          252 -----LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             -----TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             -----hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence                 1124456666666665554     4444555666666666666655433322222     246666666666655


Q ss_pred             ccCC----CccCCCCCccEEEccCCcCCCCCCCCCC-----CCCcCceeecCCCccc-----cCchhhhccCCCcEEeCC
Q 009119          441 QVPS----DGFKDIPMLQILDLSYNIASLPENPPFS-----SLPHLQELYLRRMQLR-----EAPTDILRLQQLRILDLS  506 (543)
Q Consensus       441 ~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~~~l~-----~l~~~~~~~~~L~~L~l~  506 (543)
                      ....    ..+..+++|++|++++|.++......+.     ..++|++|++++|.++     .++..+..+++|++|+++
T Consensus       327 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence            4321    2234456666666666655443222111     2567777777777777     556666677777777777


Q ss_pred             CCccccc-----cccc-cCCCCCCeEeCCCCcCC
Q 009119          507 QNSLQSI-----PEGF-KNLTSLTELDLSDNNIS  534 (543)
Q Consensus       507 ~~~l~~l-----~~~l-~~~~~L~~L~l~~~~~~  534 (543)
                      +|+++..     .+.+ .....|+.|++.++.+.
T Consensus       407 ~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          407 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             SSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence            7776632     1222 22346777777766554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.3e-29  Score=236.45  Aligned_cols=190  Identities=26%  Similarity=0.377  Sum_probs=95.1

Q ss_pred             CccEEecCCCCcccccccccCCCCCCEEEccCCcCccCC-cccccCCCccEEEecCCcccccchhhhcccccccEEECCC
Q 009119          115 ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK  193 (543)
Q Consensus       115 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  193 (543)
                      +++.++++++.++.+|..+.  +++++|++++|.+..++ ..+..+++|++|++++|.+..+....+..+++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            34455555555544444332  34555555555554432 2455555555555555555555444455555555555555


Q ss_pred             CcCCcCchhccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCCCC---CCCccccCCCCCCEEeCCCCcccccc
Q 009119          194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS---ALPAELGKLSKLGTLDLHSNQLKEYC  269 (543)
Q Consensus       194 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~---~l~~~l~~~~~L~~L~l~~n~l~~~~  269 (543)
                      |.+..+|..+.  ++|++|++++|.+..++. .+..+++|++|++++|.++   ..+..+..+ +|++|++++|.++.++
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP  188 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred             CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence            55555544333  556666666665555543 2455566666666666554   223344444 6666666666655544


Q ss_pred             hhhhcceecEEEccCCCCCCCC-hhhcCCCCCceeecCCCCc
Q 009119          270 VEACQLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPL  310 (543)
Q Consensus       270 ~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~  310 (543)
                      .... ..|++|++++|.++.++ ..+..+++|++|++++|.+
T Consensus       189 ~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l  229 (332)
T 2ft3_A          189 KDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI  229 (332)
T ss_dssp             SSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred             cccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            3322 23444444444444432 2344445555555554443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.1e-29  Score=261.51  Aligned_cols=257  Identities=12%  Similarity=0.067  Sum_probs=150.2

Q ss_pred             EEEcCccccccchHHhcCCCCCCEEEcCCCcCc----c------------cchhhhccCCCCEEEcCCCCCCC-CChhhc
Q 009119           49 KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS----E------------LPAAIGELHMLKSLDVSFNSIMK-IPDEIG  111 (543)
Q Consensus        49 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~----~------------~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~  111 (543)
                      .+.+..+.-...+..+..+++|++|+++++...    .            ++.....+++|++|+++++.+.. .+..+.
T Consensus        54 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~  133 (592)
T 3ogk_B           54 HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA  133 (592)
T ss_dssp             EEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH
T ss_pred             EEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHH
Confidence            344444322233345667777888887664321    1            11122367788888888776552 233343


Q ss_pred             c-cCC-ccEEecCCCC-cc--cccccccCCCCCCEEEccCCcCccC-----CcccccCCCccEEEecCCcccccc----h
Q 009119          112 S-ATA-LVKFDCSSNQ-LK--ELPSSLGRCLNLSDFKASNNCITSL-----PEDLADCSKMSKLDVEGNKLTVLS----N  177 (543)
Q Consensus       112 ~-~~~-L~~L~l~~~~-~~--~~~~~~~~~~~L~~L~l~~~~~~~i-----~~~~~~~~~L~~L~l~~~~i~~~~----~  177 (543)
                      . +++ |++|++++|. +.  .++....++++|++|++++|.+...     +.....+++|+.|+++++.+..+.    .
T Consensus       134 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~  213 (592)
T 3ogk_B          134 KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE  213 (592)
T ss_dssp             HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH
T ss_pred             HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH
Confidence            3 333 8888887765 22  2233344677888888887766532     223456778888888877765222    2


Q ss_pred             hhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccc----cCCCCCcCCCCCcEEEcCCCCCCCCCccccCCC
Q 009119          178 NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL----SIPSSISGCCSLAEFYMGNNALSALPAELGKLS  253 (543)
Q Consensus       178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~  253 (543)
                      ..+..+++|++|+++++.+..++..+..+++|+.|+++.....    ..+..+..+++|+.+.++++....++..+..++
T Consensus       214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~  293 (592)
T 3ogk_B          214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA  293 (592)
T ss_dssp             HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGG
T ss_pred             HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcC
Confidence            2245667788888888777777777777788888888753221    223455667777777777765556666677777


Q ss_pred             CCCEEeCCCCcccccchh---hhcceecEEEccCCCCCC--CChhhcCCCCCceeecC
Q 009119          254 KLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLT  306 (543)
Q Consensus       254 ~L~~L~l~~n~l~~~~~~---~~~~~L~~L~l~~~~i~~--~~~~l~~~~~L~~L~l~  306 (543)
                      +|++|++++|.++.....   ....+|++|++++ .+.+  ++.....+++|++|+++
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEee
Confidence            777777777775432221   1123355555552 2222  22223445566666665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2.1e-26  Score=233.27  Aligned_cols=260  Identities=30%  Similarity=0.365  Sum_probs=231.4

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhh
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~   88 (543)
                      ..++.|+|++++++++|..++               ++|++|++++|.++.+|.   .+++|++|++++|.++.+|.   
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~---------------~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---   98 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---   98 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC---------------TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---
T ss_pred             CCCcEEEecCCCcCccChhhC---------------CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---
Confidence            458899999999999998774               469999999999999977   68999999999999999887   


Q ss_pred             ccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEec
Q 009119           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (543)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~  168 (543)
                      .+++|++|++++|.++.+|.   .+++|+.|++++|.++.+|..   +++|++|++++|.++.++.   ..++|+.|+++
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~  169 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAY  169 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred             CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECC
Confidence            78999999999999998877   678999999999999998864   4899999999999998875   35789999999


Q ss_pred             CCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCcc
Q 009119          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (543)
Q Consensus       169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~  248 (543)
                      +|.+..++    ..+++|+.|++++|.+..+|..   .++|+.|++++|.+..+|..   .++|+.|++++|.++.+|  
T Consensus       170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--  237 (622)
T 3g06_A          170 NNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--  237 (622)
T ss_dssp             SSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--
T ss_pred             CCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--
Confidence            99999877    4568999999999999988753   47899999999999988754   488999999999999988  


Q ss_pred             ccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcc
Q 009119          249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL  313 (543)
Q Consensus       249 l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~  313 (543)
                       ..+++|+.|++++|.++.++.  ...+|++|++++|.++.+|..+.++++|+.|++++|++...
T Consensus       238 -~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          238 -VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             -CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence             456899999999999998877  45669999999999999999999999999999999998643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.9e-29  Score=259.76  Aligned_cols=426  Identities=16%  Similarity=0.093  Sum_probs=278.7

Q ss_pred             CEEEcCCCcCcccchhhhccCCCCEEEcCCCCCC----CCCh------------hhcccCCccEEecCCCCccc-ccccc
Q 009119           71 TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM----KIPD------------EIGSATALVKFDCSSNQLKE-LPSSL  133 (543)
Q Consensus        71 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~----~l~~------------~~~~~~~L~~L~l~~~~~~~-~~~~~  133 (543)
                      +.+.+.++.-...+..+..+++|++|+++++...    .+|.            ....+++|++|++++|.++. .+..+
T Consensus        53 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l  132 (592)
T 3ogk_B           53 EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL  132 (592)
T ss_dssp             CEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred             cEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHH
Confidence            3455554422233446778999999999886421    1121            12378999999999998773 23334


Q ss_pred             cC-CC-CCCEEEccCCcC-c--cCCcccccCCCccEEEecCCcccccc----hhhhcccccccEEECCCCcCCc-----C
Q 009119          134 GR-CL-NLSDFKASNNCI-T--SLPEDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNG-----M  199 (543)
Q Consensus       134 ~~-~~-~L~~L~l~~~~~-~--~i~~~~~~~~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~l~~~~~~~-----~  199 (543)
                      .. ++ +|++|++++|.. .  .++.....+++|++|++++|.+....    ......+++|++|+++++.+..     +
T Consensus       133 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l  212 (592)
T 3ogk_B          133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL  212 (592)
T ss_dssp             HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred             HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence            33 34 499999998862 2  23333457899999999999876442    2235677899999999998862     3


Q ss_pred             chhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC----CCCccccCCCCCCEEeCCCCcccccchhhh-c
Q 009119          200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEAC-Q  274 (543)
Q Consensus       200 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~----~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~  274 (543)
                      +..+..+++|+.|++++|.+..++..+..+++|+++.+++....    ..+..+..+++|+.+++.++....++.... .
T Consensus       213 ~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~  292 (592)
T 3ogk_B          213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA  292 (592)
T ss_dssp             HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred             HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence            44566789999999999988888877888999999999754222    344567778899999998875555554432 3


Q ss_pred             ceecEEEccCCCCCC--CChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhh
Q 009119          275 LRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA  352 (543)
Q Consensus       275 ~~L~~L~l~~~~i~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (543)
                      .+|++|++++|.+++  +...+..+++|++|++.. .+.                                  .......
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~----------------------------------~~~l~~~  337 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIG----------------------------------DRGLEVL  337 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGH----------------------------------HHHHHHH
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccC----------------------------------HHHHHHH
Confidence            459999999988665  233467888999998872 221                                  1112222


Q ss_pred             hhcccccceeeeCC----------C-CCC--CCChhhhccCCccEEEcCCCcCcc-CChhhc-cCCCCceeecc----cC
Q 009119          353 TRLSVTSKELSLEG----------M-NLS--AIPSEIWEAGEITKLDLSRNSIQE-LPPELS-SCASLQTLILS----RN  413 (543)
Q Consensus       353 ~~~~~~l~~l~l~~----------~-~~~--~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~-~~~~L~~L~l~----~~  413 (543)
                      ....++++++++.+          + .++  .+......+++|++|+++.+.+++ .+..+. .+++|+.|+++    .+
T Consensus       338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n  417 (592)
T 3ogk_B          338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE  417 (592)
T ss_dssp             HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred             HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence            23346788888883          2 333  223334457888888887766665 223333 37788888886    45


Q ss_pred             cCCCCC-----HHHhhCCCCCCEEEcCCCC--CcccCCCcc-CCCCCccEEEccCCcCCCCC-CCCCCCCCcCceeecCC
Q 009119          414 KIKDWP-----DAILTSLSSLSCLKLDNNP--LRQVPSDGF-KDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYLRR  484 (543)
Q Consensus       414 ~i~~~~-----~~~l~~~~~L~~L~L~~n~--l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~  484 (543)
                      .+++.+     ...+.++++|++|++++|.  +++.....+ ..+++|++|++++|.+++.. ...+..+++|++|++++
T Consensus       418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  497 (592)
T 3ogk_B          418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG  497 (592)
T ss_dssp             CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred             cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence            676642     2335668888888887654  443222222 34778888888888765422 22235678888888888


Q ss_pred             Cccc--cCchhhhccCCCcEEeCCCCccccc--cccccCCCCCCeEeCCCC
Q 009119          485 MQLR--EAPTDILRLQQLRILDLSQNSLQSI--PEGFKNLTSLTELDLSDN  531 (543)
Q Consensus       485 ~~l~--~l~~~~~~~~~L~~L~l~~~~l~~l--~~~l~~~~~L~~L~l~~~  531 (543)
                      |.++  .++.....+++|++|++++|+++..  ......+|.+....+..+
T Consensus       498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            8876  2444456678888888888887632  233346676666555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=7.9e-26  Score=229.07  Aligned_cols=258  Identities=24%  Similarity=0.254  Sum_probs=174.7

Q ss_pred             cccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCc
Q 009119          185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ  264 (543)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~  264 (543)
                      .++.++++++.++.+|..+.  ++|+.|++++|.+..+|.   .+++|++|++++|.++.+|.   .+++|++|++++|.
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence            46777777777777766544  677777777777776665   45677777777777776665   55777777777777


Q ss_pred             ccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccc
Q 009119          265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT  344 (543)
Q Consensus       265 l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (543)
                      ++.++.  ....|++|++++|.++.+|..   +++|++|++++|.+..++.                             
T Consensus       113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~-----------------------------  158 (622)
T 3g06_A          113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA-----------------------------  158 (622)
T ss_dssp             CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC-----------------------------
T ss_pred             CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC-----------------------------
Confidence            776655  334577777777777776653   3677777777777654431                             


Q ss_pred             hhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhh
Q 009119          345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT  424 (543)
Q Consensus       345 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~  424 (543)
                                ...+++.+++++|.++.++   ..+++|+.|++++|.++.+|..   .++|+.|++++|.++.++.    
T Consensus       159 ----------~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~----  218 (622)
T 3g06_A          159 ----------LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA----  218 (622)
T ss_dssp             ----------CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----
T ss_pred             ----------ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----
Confidence                      1134566666666666665   3356777777777777776642   3667777777777776552    


Q ss_pred             CCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEe
Q 009119          425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD  504 (543)
Q Consensus       425 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~  504 (543)
                      .+++|+.|++++|.++.++    ..+++|++|++++|.+..+..    .+++|+.|++++|+++.+|..+..+++|+.|+
T Consensus       219 ~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          219 LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN  290 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEE
T ss_pred             CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEE
Confidence            3467777777777777655    345677777777777765432    55677777777777777777777777777777


Q ss_pred             CCCCcccc
Q 009119          505 LSQNSLQS  512 (543)
Q Consensus       505 l~~~~l~~  512 (543)
                      +++|.+..
T Consensus       291 L~~N~l~~  298 (622)
T 3g06_A          291 LEGNPLSE  298 (622)
T ss_dssp             CCSCCCCH
T ss_pred             ecCCCCCC
Confidence            77777663

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=5e-26  Score=213.46  Aligned_cols=240  Identities=23%  Similarity=0.271  Sum_probs=182.4

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCccc---chhh
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL---PAAI   87 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~---~~~~   87 (543)
                      +.++|++++++++|..++               +++++|++++|.++.++. .|+++++|++|++++|.+..+   +.++
T Consensus        10 ~~l~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   74 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP---------------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD   74 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred             CEEEcCCCCcccCCCCCC---------------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence            578999999999998773               469999999999998875 578999999999999988755   5677


Q ss_pred             hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccc--cccCCCCCCEEEccCCcCccC-CcccccCCCccE
Q 009119           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSK  164 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~  164 (543)
                      ..+++|++|++++|.+..++..+..+++|++|++++|.+..++.  .+..+++|++|++++|.+..+ +..+..+++|++
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence            78899999999999988888888889999999999998887763  677888888888888887743 455777888888


Q ss_pred             EEecCCcccc-cchhhhcccccccEEECCCCcCCcC-chhccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCC
Q 009119          165 LDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA  241 (543)
Q Consensus       165 L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~  241 (543)
                      |++++|.+.. .....+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            8888887764 3334466677777777777777655 4456667777777777777766543 45566777777777776


Q ss_pred             CCC-CCccccCCC-CCCEEeCCCCccc
Q 009119          242 LSA-LPAELGKLS-KLGTLDLHSNQLK  266 (543)
Q Consensus       242 l~~-l~~~l~~~~-~L~~L~l~~n~l~  266 (543)
                      +.. .+..+..++ +|++|++++|.+.
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CcccCHHHHHhhhccCCEEEccCCCee
Confidence            663 344555553 6777777766654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=1.2e-26  Score=217.68  Aligned_cols=241  Identities=26%  Similarity=0.339  Sum_probs=210.1

Q ss_pred             cCccEEEcCccccc---cchHHhcCCCCCCEEEcCC-CcCc-ccchhhhccCCCCEEEcCCCCCC-CCChhhcccCCccE
Q 009119           45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK  118 (543)
Q Consensus        45 ~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~  118 (543)
                      .+++.|+++++.+.   .+|..|.++++|++|++++ |.+. .+|..|.++++|++|++++|.+. .+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57999999999988   5788999999999999995 7776 67889999999999999999988 78888999999999


Q ss_pred             EecCCCCcc-cccccccCCCCCCEEEccCCcCc-cCCcccccCC-CccEEEecCCcccccchhhhcccccccEEECCCCc
Q 009119          119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL  195 (543)
Q Consensus       119 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~  195 (543)
                      |++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|+.|++++|.+.......+..+. |++|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999998 78888999999999999999998 7888899988 999999999998865555577776 9999999999


Q ss_pred             CC-cCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC-CCCccccCCCCCCEEeCCCCccc-ccchhh
Q 009119          196 LN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEA  272 (543)
Q Consensus       196 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~  272 (543)
                      +. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.+. .+|.++..+++|++|++++|.++ .++...
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            86 4566788999999999999999866666788899999999999998 78889999999999999999998 455543


Q ss_pred             hcceecEEEccCCC
Q 009119          273 CQLRLSVLDLSNNS  286 (543)
Q Consensus       273 ~~~~L~~L~l~~~~  286 (543)
                      ....++.+++++|.
T Consensus       289 ~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          289 NLQRFDVSAYANNK  302 (313)
T ss_dssp             TGGGSCGGGTCSSS
T ss_pred             cccccChHHhcCCC
Confidence            34458888888885

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.5e-26  Score=219.97  Aligned_cols=264  Identities=21%  Similarity=0.293  Sum_probs=189.4

Q ss_pred             cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCcccc-hhhh
Q 009119           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELP-AAIG   88 (543)
Q Consensus        11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~   88 (543)
                      ....++++++++++|..++               ++|++|++++|.++.++. .|.++++|++|++++|.+..++ .+|.
T Consensus        33 ~~~c~~~~~~l~~iP~~~~---------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSGLT---------------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS   97 (353)
T ss_dssp             TSEEECCSTTCSSCCTTCC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CeEeeCCCCCccccccccc---------------ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC
Confidence            3457888888888887763               458888888888887764 7888888888888888888664 4788


Q ss_pred             ccCCCCEEEcCCCCCCCCChh-hcccCCccEEecCCCCcccccc--cccCCCCCCEEEccCC-cCccC-CcccccCCCcc
Q 009119           89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNN-CITSL-PEDLADCSKMS  163 (543)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~i-~~~~~~~~~L~  163 (543)
                      ++++|++|++++|.++.++.. +.++++|++|++++|.++.+|.  .+.++++|++|++++| .+..+ +..+..+++|+
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence            888888888888888877765 7788888888888888887775  6778888888888887 45554 45677788888


Q ss_pred             EEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc-cCCCcccEEEccCCccccCCCC----CcCCCCCcEEEcC
Q 009119          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSS----ISGCCSLAEFYMG  238 (543)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~l~l~  238 (543)
                      +|++++|.+..+....+..+++|++|++++|.+..++..+ ..+++|+.|++++|.+..++..    ......++.+++.
T Consensus       178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~  257 (353)
T 2z80_A          178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR  257 (353)
T ss_dssp             EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred             EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence            8888888887776666777888888888888877666543 3467788888888777654321    1123344444444


Q ss_pred             CCCCC-----CCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChh-hcCCCCCceeecCCCCcC
Q 009119          239 NNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLR  311 (543)
Q Consensus       239 ~~~l~-----~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~-l~~~~~L~~L~l~~~~~~  311 (543)
                      ++.+.     .+|.++..+++                      |++|++++|.++.+|.. +..+++|++|++++|++.
T Consensus       258 ~~~l~~~~l~~l~~~l~~l~~----------------------L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          258 NVKITDESLFQVMKLLNQISG----------------------LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             SCBCCHHHHHHHHHHHHTCTT----------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccccCcchhhhHHHHhcccC----------------------CCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            44433     12333444444                      55555555555555555 477888888888888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=3e-26  Score=214.95  Aligned_cols=241  Identities=22%  Similarity=0.324  Sum_probs=202.4

Q ss_pred             CCCCEEEcCCCcCc---ccchhhhccCCCCEEEcCC-CCCC-CCChhhcccCCccEEecCCCCcc-cccccccCCCCCCE
Q 009119           68 PLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVSF-NSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSD  141 (543)
Q Consensus        68 ~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~  141 (543)
                      .++++|+++++.+.   .+|.++.++++|++|++++ |.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57899999999988   4788999999999999994 7766 77888999999999999999998 78888999999999


Q ss_pred             EEccCCcCc-cCCcccccCCCccEEEecCCcccccchhhhcccc-cccEEECCCCcCC-cCchhccCCCcccEEEccCCc
Q 009119          142 FKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT-MLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNR  218 (543)
Q Consensus       142 L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~  218 (543)
                      |++++|.+. .+|..+..+++|++|++++|.+.......+..++ .|++|++++|.+. .+|..+..+. |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999998 6788899999999999999998844444477776 8999999999986 6777777776 9999999998


Q ss_pred             cc-cCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccc-ccchhhhc-ceecEEEccCCCCCC-CChhh
Q 009119          219 IL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ-LRLSVLDLSNNSLSG-LPPEI  294 (543)
Q Consensus       219 ~~-~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~-~~L~~L~l~~~~i~~-~~~~l  294 (543)
                      +. ..|..+..+++|+.|++++|.+...+..+..+++|++|++++|.+. .++..... ..|++|++++|.+++ +|.. 
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence            88 4456778899999999999998866666888899999999999998 44443333 349999999999886 5554 


Q ss_pred             cCCCCCceeecCCCCc
Q 009119          295 GKMTTLRKLLLTGNPL  310 (543)
Q Consensus       295 ~~~~~L~~L~l~~~~~  310 (543)
                      .++++|+.+++++|+.
T Consensus       288 ~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             TTGGGSCGGGTCSSSE
T ss_pred             ccccccChHHhcCCCC
Confidence            7888999999999873

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.1e-25  Score=212.38  Aligned_cols=223  Identities=21%  Similarity=0.270  Sum_probs=186.9

Q ss_pred             ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (543)
                      .++++.|+++++.+..+|..+..+++|++|++++|.+..+|..+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            36788999999998888888888999999999999888888888889999999999998888888888899999999988


Q ss_pred             CCcc-ccccccc---------CCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCC
Q 009119          124 NQLK-ELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK  193 (543)
Q Consensus       124 ~~~~-~~~~~~~---------~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~  193 (543)
                      |.+. .+|..+.         ++++|++|++++|.++.+|..+..+++|++|++++|.+..+... +..+++|++|++++
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRG  238 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTT
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcC
Confidence            6544 6666554         48899999999998888888888899999999999988877664 78888899999998


Q ss_pred             CcC-CcCchhccCCCcccEEEccCCccc-cCCCCCcCCCCCcEEEcCCCCCC-CCCccccCCCCCCEEeCCCCcccc
Q 009119          194 NLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE  267 (543)
Q Consensus       194 ~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~l~-~l~~~l~~~~~L~~L~l~~n~l~~  267 (543)
                      |.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++++.+++..+.+..
T Consensus       239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            776 567777888899999999987544 67778888999999999987655 788889999999999888776553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=2.4e-28  Score=251.84  Aligned_cols=152  Identities=12%  Similarity=0.099  Sum_probs=88.2

Q ss_pred             ccccceeeeCCCCCCC-CChhh-hccCCccEEEcC--C----CcCccCC------hhhccCCCCceeecccCcCCCCCHH
Q 009119          356 SVTSKELSLEGMNLSA-IPSEI-WEAGEITKLDLS--R----NSIQELP------PELSSCASLQTLILSRNKIKDWPDA  421 (543)
Q Consensus       356 ~~~l~~l~l~~~~~~~-~~~~~-~~~~~L~~L~l~--~----~~l~~l~------~~~~~~~~L~~L~l~~~~i~~~~~~  421 (543)
                      .++++.+.+..+.++. ....+ ..+++|+.|+++  +    +.++..|      ..+..+++|+.|++++ .+++....
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~  449 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE  449 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence            3556666555555542 11222 246777777777  3    3455332      2255677788888866 55554444


Q ss_pred             HhhC-CCCCCEEEcCCCCCcccCCCcc-CCCCCccEEEccCCcCCCCCCC-CCCCCCcCceeecCCCcccc-Cchhh-hc
Q 009119          422 ILTS-LSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYNIASLPENP-PFSSLPHLQELYLRRMQLRE-APTDI-LR  496 (543)
Q Consensus       422 ~l~~-~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~~~l~~-l~~~~-~~  496 (543)
                      .+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.++..... ....+++|++|++++|.++. ....+ ..
T Consensus       450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  529 (594)
T 2p1m_B          450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQK  529 (594)
T ss_dssp             HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred             HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence            4444 7778888888877765433333 4577788888887776432221 23456788888888887751 11122 44


Q ss_pred             cCCCcEEeCCCC
Q 009119          497 LQQLRILDLSQN  508 (543)
Q Consensus       497 ~~~L~~L~l~~~  508 (543)
                      ++.|+...+.++
T Consensus       530 lp~l~i~~~~~~  541 (594)
T 2p1m_B          530 MPKLNVEVIDER  541 (594)
T ss_dssp             CTTEEEEEECSS
T ss_pred             CCCCEEEEecCC
Confidence            667766666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=6.6e-26  Score=217.06  Aligned_cols=272  Identities=21%  Similarity=0.280  Sum_probs=149.1

Q ss_pred             ccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCC
Q 009119          184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH  261 (543)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~  261 (543)
                      +.....+.+++.++.+|..+.  ++|+.|++++|.+..++. .+..+++|+.|++++|.++.+ +..+..+++|++|+++
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            333445555555555555433  356666666665555543 455555555555555555543 2345555555555555


Q ss_pred             CCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCccccc
Q 009119          262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA  341 (543)
Q Consensus       262 ~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (543)
                      +|.++.++...                     +.++++|++|++++|.+..++..                         
T Consensus       109 ~n~l~~~~~~~---------------------~~~l~~L~~L~L~~n~l~~l~~~-------------------------  142 (353)
T 2z80_A          109 YNYLSNLSSSW---------------------FKPLSSLTFLNLLGNPYKTLGET-------------------------  142 (353)
T ss_dssp             SSCCSSCCHHH---------------------HTTCTTCSEEECTTCCCSSSCSS-------------------------
T ss_pred             CCcCCcCCHhH---------------------hCCCccCCEEECCCCCCcccCch-------------------------
Confidence            55554433321                     44555555555555544332210                         


Q ss_pred             ccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCc-CccC-ChhhccCCCCceeecccCcCCCCC
Q 009119          342 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQEL-PPELSSCASLQTLILSRNKIKDWP  419 (543)
Q Consensus       342 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l-~~~~~~~~~L~~L~l~~~~i~~~~  419 (543)
                                                      ..+..+++|++|++++|. ++.+ +..+..+++|++|++++|.+++..
T Consensus       143 --------------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  190 (353)
T 2z80_A          143 --------------------------------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE  190 (353)
T ss_dssp             --------------------------------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             --------------------------------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence                                            012223445555555442 3333 233445555555555555555544


Q ss_pred             HHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCC---CCCCCcCceeecCCCccc-----cCc
Q 009119          420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPP---FSSLPHLQELYLRRMQLR-----EAP  491 (543)
Q Consensus       420 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~L~~L~l~~~~l~-----~l~  491 (543)
                      +..+..+++|++|++++|.+..++...+..+++|++|++++|.+.......   ....+.++.++++++.+.     .+|
T Consensus       191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~  270 (353)
T 2z80_A          191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM  270 (353)
T ss_dssp             TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred             HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence            444555555555555555554444333344555555555555554432221   123455666666666555     466


Q ss_pred             hhhhccCCCcEEeCCCCcccccccc-ccCCCCCCeEeCCCCcCCc
Q 009119          492 TDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA  535 (543)
Q Consensus       492 ~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~  535 (543)
                      ..+..+++|+.|++++|+++.+|.. +..+++|+.|++++|++..
T Consensus       271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            7777888888888888888888765 4788888888888888764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=6.7e-26  Score=213.75  Aligned_cols=224  Identities=21%  Similarity=0.322  Sum_probs=201.5

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhh
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~   88 (543)
                      +.+++|++++++++.+|..+..             +++|++|++++|.+..+|..+..+++|++|++++|.+..+|..+.
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~-------------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~  147 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFR-------------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA  147 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGG-------------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred             cceeEEEccCCCchhcChhhhh-------------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence            6889999999999999988755             678999999999999999999999999999999999999999999


Q ss_pred             ccCCCCEEEcCCCC-CCCCChhhc---------ccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCccccc
Q 009119           89 ELHMLKSLDVSFNS-IMKIPDEIG---------SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD  158 (543)
Q Consensus        89 ~~~~L~~L~l~~~~-~~~l~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~  158 (543)
                      .+++|++|++++|. ...+|..+.         .+++|++|++++|.++.+|..+.++++|++|++++|.+..++..+..
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~  227 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH  227 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence            99999999999976 446776665         49999999999999999999999999999999999999999999999


Q ss_pred             CCCccEEEecCCcccccchhhhcccccccEEECCCCcC-CcCchhccCCCcccEEEccCCccc-cCCCCCcCCCCCcEEE
Q 009119          159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFY  236 (543)
Q Consensus       159 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~  236 (543)
                      +++|++|++++|.+.......+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++++.+.
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            99999999999887766666688999999999999776 678888999999999999997655 7899999999999999


Q ss_pred             cCCCCCCCC
Q 009119          237 MGNNALSAL  245 (543)
Q Consensus       237 l~~~~l~~l  245 (543)
                      +..+.+..+
T Consensus       308 l~~~~~~~l  316 (328)
T 4fcg_A          308 VPPHLQAQL  316 (328)
T ss_dssp             CCGGGSCC-
T ss_pred             CCHHHHHHH
Confidence            987655543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.5e-25  Score=210.25  Aligned_cols=221  Identities=20%  Similarity=0.241  Sum_probs=182.9

Q ss_pred             ccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCCCC---ChhhcccCCccEEecC
Q 009119           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCS  122 (543)
Q Consensus        47 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~  122 (543)
                      -+.++++++.++.+|..+.  +++++|++++|.+..+|. .|.++++|++|++++|.+..+   +..+..+++|++|+++
T Consensus         9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            3689999999999987554  789999999999998876 578999999999999998854   5677789999999999


Q ss_pred             CCCcccccccccCCCCCCEEEccCCcCccCCc--ccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCc--
Q 009119          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--  198 (543)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~--~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~--  198 (543)
                      +|.+..+|..+..+++|++|++++|.+..++.  .+..+++|++|++++|.+..+....+..+++|++|++++|.+..  
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            99999988888999999999999999987754  68888999999999998887777778888888888888888764  


Q ss_pred             CchhccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCCCCCCc-cccCCCCCCEEeCCCCcccccc
Q 009119          199 MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYC  269 (543)
Q Consensus       199 ~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~  269 (543)
                      ++..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|++|++++|.+....
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  239 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK  239 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence            666777888888888888888765 5567778888888888888876644 5677788888888877776543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=3.1e-28  Score=250.91  Aligned_cols=429  Identities=14%  Similarity=0.154  Sum_probs=262.8

Q ss_pred             ccEEEcCccccccchHHhcCCCCCCEEEcCCCc-Cccc---------------chhhhccCCCCEEEcCCCCCCC-CChh
Q 009119           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-LSEL---------------PAAIGELHMLKSLDVSFNSIMK-IPDE  109 (543)
Q Consensus        47 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-l~~~---------------~~~~~~~~~L~~L~l~~~~~~~-l~~~  109 (543)
                      .+.++++.+....-...+..+++|++|+++++. +.++               +.....+++|++|+++++.+.. .+..
T Consensus        45 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~  124 (594)
T 2p1m_B           45 RRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL  124 (594)
T ss_dssp             CCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred             ceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence            456777666544434567889999999999875 2211               1234578899999999888762 2334


Q ss_pred             hc-ccCCccEEecCCC-Cccc--ccccccCCCCCCEEEccCCcCcc-----CCcccccCCCccEEEecCCcccccchhh-
Q 009119          110 IG-SATALVKFDCSSN-QLKE--LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNL-  179 (543)
Q Consensus       110 ~~-~~~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~~~~~-----i~~~~~~~~~L~~L~l~~~~i~~~~~~~-  179 (543)
                      +. .+++|++|++++| .+..  ++....++++|++|++++|.+..     ++.....+++|+.|+++++. ..+.... 
T Consensus       125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l  203 (594)
T 2p1m_B          125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSAL  203 (594)
T ss_dssp             HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHH
T ss_pred             HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHH
Confidence            43 6889999999888 4543  44555678899999999888663     22233467789999988876 2222222 


Q ss_pred             ---hcccccccEEECCCC-cCCcCchhccCCCcccEEEccCCc-------cccCCCCCcCCCCCcEE-EcCCCCCCCCCc
Q 009119          180 ---IASWTMLTELIASKN-LLNGMPETIGSLSRLIRLDLHQNR-------ILSIPSSISGCCSLAEF-YMGNNALSALPA  247 (543)
Q Consensus       180 ---~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~L~~l-~l~~~~l~~l~~  247 (543)
                         ...+++|++|++++| .+..++..+..+++|+.|+++.+.       +..++..+..+++|+.+ .+.+.....++.
T Consensus       204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~  283 (594)
T 2p1m_B          204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA  283 (594)
T ss_dssp             HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG
T ss_pred             HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH
Confidence               234578888888877 334566666777888888866543       22333345566666666 333333233444


Q ss_pred             cccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHH
Q 009119          248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK  327 (543)
Q Consensus       248 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  327 (543)
                      .+..+++|++|++++|.++...                    +...+..+++|++|++++| +..               
T Consensus       284 ~~~~~~~L~~L~L~~~~l~~~~--------------------l~~~~~~~~~L~~L~l~~~-~~~---------------  327 (594)
T 2p1m_B          284 VYSVCSRLTTLNLSYATVQSYD--------------------LVKLLCQCPKLQRLWVLDY-IED---------------  327 (594)
T ss_dssp             GHHHHTTCCEEECTTCCCCHHH--------------------HHHHHTTCTTCCEEEEEGG-GHH---------------
T ss_pred             HHHhhCCCCEEEccCCCCCHHH--------------------HHHHHhcCCCcCEEeCcCc-cCH---------------
Confidence            4445566666666666544211                    1112334555555555544 100               


Q ss_pred             HHhccCCCCcccccccchhhHHHhhhhcccccceeeeCC---------CCCC--CCChhhhccCCccEEEcCCCcCccC-
Q 009119          328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG---------MNLS--AIPSEIWEAGEITKLDLSRNSIQEL-  395 (543)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~--~~~~~~~~~~~L~~L~l~~~~l~~l-  395 (543)
                                         ..........++++++++.+         +.++  .+......+++|+.|.+..+.+++. 
T Consensus       328 -------------------~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~  388 (594)
T 2p1m_B          328 -------------------AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA  388 (594)
T ss_dssp             -------------------HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred             -------------------HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence                               00111111234455555522         1222  1112223478999998887777762 


Q ss_pred             Chhh-ccCCCCceeecc--c----CcCCCCCH-----HHhhCCCCCCEEEcCCCCCcccCCCccCC-CCCccEEEccCCc
Q 009119          396 PPEL-SSCASLQTLILS--R----NKIKDWPD-----AILTSLSSLSCLKLDNNPLRQVPSDGFKD-IPMLQILDLSYNI  462 (543)
Q Consensus       396 ~~~~-~~~~~L~~L~l~--~----~~i~~~~~-----~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~n~  462 (543)
                      ...+ ..+++|+.|+++  +    +.+++.+.     ..+..+++|++|++++ .+++.....+.. +++|++|++++|.
T Consensus       389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~  467 (594)
T 2p1m_B          389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG  467 (594)
T ss_dssp             HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred             HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence            2223 358899999998  3    46664332     2356789999999977 555543333433 7889999999988


Q ss_pred             CCCCCCCCC-CCCCcCceeecCCCcccc--CchhhhccCCCcEEeCCCCccccc-cccc-cCCCCCCeEeCCCCc
Q 009119          463 ASLPENPPF-SSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQSI-PEGF-KNLTSLTELDLSDNN  532 (543)
Q Consensus       463 ~~~~~~~~~-~~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~l-~~~l-~~~~~L~~L~l~~~~  532 (543)
                      +++.....+ ..+++|++|++++|.++.  +......+++|+.|++++|+++.- ...+ ..+|.|+...+..+.
T Consensus       468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            755433333 568999999999998862  223445688999999999987521 1223 567888776666553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.7e-25  Score=207.46  Aligned_cols=217  Identities=28%  Similarity=0.411  Sum_probs=152.7

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCccc-chhhhc
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~   89 (543)
                      +.++|++++++++|..+               .+++++|+++++.+..++ ..|..+++|++|++++|.+..+ +.+|..
T Consensus        14 ~~~~c~~~~l~~ip~~~---------------~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   78 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI---------------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG   78 (285)
T ss_dssp             CEEECCSSCCSSCCTTC---------------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             eEEEcCcCCcccCCcCC---------------CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence            56889888899888766               346889999998888776 5688888899999988888866 567888


Q ss_pred             cCCCCEEEcCCCC-CCCC-ChhhcccCCccEEecCCCCcccc-cccccCCCCCCEEEccCCcCccCCcc-cccCCCccEE
Q 009119           90 LHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL  165 (543)
Q Consensus        90 ~~~L~~L~l~~~~-~~~l-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L  165 (543)
                      +++|++|++++|. +..+ +..+..+++|++|++++|.+..+ +..+.++++|++|++++|.+..++.. +..+++|+.|
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence            8888888888886 7766 55677888888888888887765 35566777777777777777765433 5566666666


Q ss_pred             EecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCCCC
Q 009119          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSA  244 (543)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l~~  244 (543)
                      ++++|.+..+....+..                       +++|+.|++++|.+..+ |..+..+++|+.|++++|.++.
T Consensus       159 ~l~~n~l~~~~~~~~~~-----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          159 FLHGNRISSVPERAFRG-----------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             ECCSSCCCEECTTTTTT-----------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCcccccCHHHhcC-----------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence            66666665555444444                       44555555555555433 4455556666666666666665


Q ss_pred             CCc-cccCCCCCCEEeCCCCccc
Q 009119          245 LPA-ELGKLSKLGTLDLHSNQLK  266 (543)
Q Consensus       245 l~~-~l~~~~~L~~L~l~~n~l~  266 (543)
                      ++. .+..+++|+.|++++|.+.
T Consensus       216 ~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          216 LPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CCHHHcccCcccCEEeccCCCcc
Confidence            543 4666777777777777665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2e-24  Score=213.07  Aligned_cols=239  Identities=24%  Similarity=0.356  Sum_probs=182.5

Q ss_pred             cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccc-hhhh
Q 009119           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG   88 (543)
Q Consensus        11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~   88 (543)
                      .+.++|++.+++++|..+.               ++++.|+|++|.+..++ ..|.++++|++|++++|.+..++ .+|.
T Consensus        45 ~~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~  109 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS---------------TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN  109 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC---------------TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred             CCEEEeCCCCcCcCCCCCC---------------CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence            4578888888888888774               45888888888888775 67888888888888888888764 4788


Q ss_pred             ccCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCC-cCccCCc-ccccCCCccE
Q 009119           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK  164 (543)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~i~~-~~~~~~~L~~  164 (543)
                      .+++|++|++++|.++.++. .+..+++|++|++++|.+..++. .+..+++|++|+++++ .+..++. .+..+++|+.
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  189 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY  189 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred             CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence            88888888888888887765 57788888888888888887663 6778888888888874 4444443 5777888888


Q ss_pred             EEecCCcccccchhhhcccccccEEECCCCcCCcC-chhccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCC
Q 009119          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL  242 (543)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l  242 (543)
                      |++++|.+..++.  +..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus       190 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          190 LNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             EECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             ecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            8888888777664  67777788888888877665 45677778888888888877755 34567777888888888877


Q ss_pred             CCCCc-cccCCCCCCEEeCCCCccc
Q 009119          243 SALPA-ELGKLSKLGTLDLHSNQLK  266 (543)
Q Consensus       243 ~~l~~-~l~~~~~L~~L~l~~n~l~  266 (543)
                      +.++. .+..+++|+.|++++|.+.
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CccChhHhccccCCCEEEcCCCCcc
Confidence            76654 4566777888887777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=3e-24  Score=212.64  Aligned_cols=239  Identities=24%  Similarity=0.338  Sum_probs=194.0

Q ss_pred             cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccc-hHHhcCCCCCCEEEcCCCcCcccc-hhhh
Q 009119           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AAIG   88 (543)
Q Consensus        11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~   88 (543)
                      .+.++|++.+++++|..+.               +++++|++++|.+..+ +..|.++++|++|++++|.+..++ .+|.
T Consensus        56 ~~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  120 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP---------------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN  120 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CcEEEECCCCcCccCCCCC---------------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc
Confidence            3578899999999997773               4689999999999877 467899999999999999888764 5888


Q ss_pred             ccCCCCEEEcCCCCCCCCCh-hhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCC-cCccCCc-ccccCCCccE
Q 009119           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK  164 (543)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~i~~-~~~~~~~L~~  164 (543)
                      .+++|++|++++|.+..++. .+..+++|++|++++|.+..++. .+.++++|++|+++++ .+..++. .+..+++|+.
T Consensus       121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  200 (452)
T 3zyi_A          121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY  200 (452)
T ss_dssp             TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred             CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence            89999999999999887765 47788999999999999887764 6788889999999884 4555543 4778888999


Q ss_pred             EEecCCcccccchhhhcccccccEEECCCCcCCcC-chhccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCCC
Q 009119          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL  242 (543)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~l  242 (543)
                      |++++|.+..++.  +..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus       201 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          201 LNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             EECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence            9999888887754  77788888899988888765 55688888888888888888855 45677888888888888888


Q ss_pred             CCCCc-cccCCCCCCEEeCCCCccc
Q 009119          243 SALPA-ELGKLSKLGTLDLHSNQLK  266 (543)
Q Consensus       243 ~~l~~-~l~~~~~L~~L~l~~n~l~  266 (543)
                      +.++. .+..+++|+.|++++|.+.
T Consensus       279 ~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          279 SSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             SCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CccChHHhccccCCCEEEccCCCcC
Confidence            87654 4677888888888888765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.7e-24  Score=200.65  Aligned_cols=219  Identities=23%  Similarity=0.308  Sum_probs=154.1

Q ss_pred             CccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCC
Q 009119           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS  123 (543)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~  123 (543)
                      .-++++++++.++.+|..+  .+++++|++++|.+..++. +|..+++|++|++++|.+..+ +..+..+++|++|++++
T Consensus        12 ~~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           12 PKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SSCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            3467777777777776543  3577777777777776653 567777777777777776654 45566667777777766


Q ss_pred             CC-cccc-cccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCch
Q 009119          124 NQ-LKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE  201 (543)
Q Consensus       124 ~~-~~~~-~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  201 (543)
                      |. +..+ +..+..+++|++|++++|.+.                       .+....+..+++|++|++++|.+..++.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-----------------------ELGPGLFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCC-----------------------EECHhHhhCCcCCCEEECCCCcccccCH
Confidence            65 5544 344555555555555555554                       4333334455555555555555555443


Q ss_pred             -hccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccchhhhc--ce
Q 009119          202 -TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LR  276 (543)
Q Consensus       202 -~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~  276 (543)
                       .+..+++|+.|++++|.+..++. .+..+++|++|++++|.+..+ |..+..+++|+.|++++|.++.++...+.  ..
T Consensus       147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  226 (285)
T 1ozn_A          147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence             36677888888888888887765 478899999999999999965 77899999999999999999988765443  45


Q ss_pred             ecEEEccCCCCCC
Q 009119          277 LSVLDLSNNSLSG  289 (543)
Q Consensus       277 L~~L~l~~~~i~~  289 (543)
                      |+++++++|.+..
T Consensus       227 L~~L~l~~N~~~c  239 (285)
T 1ozn_A          227 LQYLRLNDNPWVC  239 (285)
T ss_dssp             CCEEECCSSCEEC
T ss_pred             cCEEeccCCCccC
Confidence            9999999998875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.5e-25  Score=210.37  Aligned_cols=238  Identities=16%  Similarity=0.168  Sum_probs=118.2

Q ss_pred             hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccc--cchHHhc-------CCCCCCEEEcCCCcC
Q 009119           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE--KLKEDLR-------NLPLLTVLNVSHNKL   80 (543)
Q Consensus        10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~~-------~~~~L~~L~l~~~~l   80 (543)
                      .+++++++++.+ .+|..++..               ++.|+++++.+.  .++..+.       ++++|++|++++|.+
T Consensus        44 ~L~~l~l~~n~l-~~p~~~~~~---------------L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l  107 (312)
T 1wwl_A           44 SLEYLLKRVDTE-ADLGQFTDI---------------IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV  107 (312)
T ss_dssp             ECTTHHHHCCTT-CCCHHHHHH---------------HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC
T ss_pred             CceeEeeccccc-ccHHHHHHH---------------HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc
Confidence            344555555555 555555432               555555555553  2333332       455555555555555


Q ss_pred             c-ccchhh--hccCCCCEEEcCCCCCCCCChhhccc-----CCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCcc
Q 009119           81 S-ELPAAI--GELHMLKSLDVSFNSIMKIPDEIGSA-----TALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITS  151 (543)
Q Consensus        81 ~-~~~~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~-----~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~  151 (543)
                      . .+|..+  ..+++|++|++++|.+...|..+..+     ++|++|++++|.+..++ ..+.++++|++|++++|.+..
T Consensus       108 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred             cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence            5 344433  55555555555555555445444444     55555555555555444 445555555555555555431


Q ss_pred             ---CCccc--ccCCCccEEEecCCcccc---cchhhhcccccccEEECCCCcCCcCc--hhccCCCcccEEEccCCcccc
Q 009119          152 ---LPEDL--ADCSKMSKLDVEGNKLTV---LSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILS  221 (543)
Q Consensus       152 ---i~~~~--~~~~~L~~L~l~~~~i~~---~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~  221 (543)
                         ++..+  ..+++|++|++++|.+..   +....+..+++|++|++++|.+...+  ..+..+++|+.|++++|.++.
T Consensus       188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~  267 (312)
T 1wwl_A          188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ  267 (312)
T ss_dssp             HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS
T ss_pred             chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh
Confidence               11222  445555555555555542   22222334455555555555554432  223334555555555555555


Q ss_pred             CCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccc
Q 009119          222 IPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (543)
Q Consensus       222 ~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~  266 (543)
                      +|..+.  ++|++|++++|.++.+|. +..+++|++|++++|.++
T Consensus       268 ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          268 VPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred             hhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence            544443  455555555555554443 444555555555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=8.5e-25  Score=205.66  Aligned_cols=236  Identities=22%  Similarity=0.278  Sum_probs=172.7

Q ss_pred             cCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccchhhhc
Q 009119           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGE   89 (543)
Q Consensus        11 ~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~   89 (543)
                      ++..+++.+.+.+++..+++.            +++|++|++++|.+..++ ..|..+++|++|++++|.+..+++ +..
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~   78 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQS------------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LES   78 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTT------------GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETT
T ss_pred             eeEeeccccchhhhHHHHhcc------------CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhh
Confidence            344566666666666666554            567888888888888764 678888888888888888876554 778


Q ss_pred             cCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCC-cccccCCCccEEEec
Q 009119           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVE  168 (543)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l~  168 (543)
                      +++|++|++++|.+..++    ..++|++|++++|.++.++..  .+++|++|++++|.+..++ ..+..+++|+.|+++
T Consensus        79 l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (317)
T 3o53_A           79 LSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (317)
T ss_dssp             CTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred             cCCCCEEECcCCcccccc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence            888888888888777654    347888888888888766532  3567888888888887663 356777888888888


Q ss_pred             CCcccccchhhh-cccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCc
Q 009119          169 GNKLTVLSNNLI-ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA  247 (543)
Q Consensus       169 ~~~i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~  247 (543)
                      +|.+..+....+ ..+++|++|++++|.+..++.. ..+++|+.|++++|.+..++..+..+++|+.|++++|.++.+|.
T Consensus       153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~  231 (317)
T 3o53_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK  231 (317)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred             CCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence            888776655444 3567788888888877766543 24677788888877777777667777777777777777777777


Q ss_pred             cccCCCCCCEEeCCCCccc
Q 009119          248 ELGKLSKLGTLDLHSNQLK  266 (543)
Q Consensus       248 ~l~~~~~L~~L~l~~n~l~  266 (543)
                      .+..+++|+.|++++|.+.
T Consensus       232 ~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCB
T ss_pred             HhhcCCCCCEEEccCCCcc
Confidence            7777777777777777765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=207.49  Aligned_cols=241  Identities=22%  Similarity=0.353  Sum_probs=169.6

Q ss_pred             ccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhc--ceecEEEccCC
Q 009119          209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNN  285 (543)
Q Consensus       209 L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~~  285 (543)
                      ...++..+..+..+|..+.  ++++.|++++|.+..++ ..+..+++|++|++++|.+..+....+.  ..|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            5677777777878877653  67888888888888554 5677888888888888888776654433  33666666666


Q ss_pred             CCCCCCh-hhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeee
Q 009119          286 SLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL  364 (543)
Q Consensus       286 ~i~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l  364 (543)
                      .++.++. .+..+++|++|++++|.+..++.                                                 
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-------------------------------------------------  153 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPS-------------------------------------------------  153 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECT-------------------------------------------------
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCH-------------------------------------------------
Confidence            6666544 35566666666666665543321                                                 


Q ss_pred             CCCCCCCCChhhhccCCccEEEcCCCc-CccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCccc
Q 009119          365 EGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV  442 (543)
Q Consensus       365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~  442 (543)
                               ..+..+++|++|++++|. +..++. .+..+++|+.|++++|.+++++.  +..+++|++|++++|.++++
T Consensus       154 ---------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          154 ---------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             ---------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEE
T ss_pred             ---------HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCcc
Confidence                     123346677888887743 455543 46777888888888888777653  57778888888888888777


Q ss_pred             CCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119          443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       443 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~  511 (543)
                      ....|..+++|++|++++|.+....+..|..+++|++|++++|+++.++.. +..+++|+.|++++|.+.
T Consensus       223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            777777888888888888887777777777788888888888887766544 456778888888887765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=1.4e-23  Score=207.79  Aligned_cols=241  Identities=24%  Similarity=0.360  Sum_probs=153.7

Q ss_pred             ccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCCCCcccccchhhhc--ceecEEEccCC
Q 009119          209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNN  285 (543)
Q Consensus       209 L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~L~l~~~  285 (543)
                      ...++.++..+..+|..+.  ++++.|++++|.++.+ +..+..+++|++|++++|.+..+....+.  ..|++|++++|
T Consensus        56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            4567777777777776543  5777888888777754 45677777788887777777765543322  23555555555


Q ss_pred             CCCCCChh-hcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeee
Q 009119          286 SLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL  364 (543)
Q Consensus       286 ~i~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l  364 (543)
                      .++.++.. +..+++|++|++++|.+..++.                                                 
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------------------------------  164 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPS-------------------------------------------------  164 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECT-------------------------------------------------
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCH-------------------------------------------------
Confidence            55554332 4445555555555554433221                                                 


Q ss_pred             CCCCCCCCChhhhccCCccEEEcCCC-cCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCccc
Q 009119          365 EGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV  442 (543)
Q Consensus       365 ~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~  442 (543)
                               ..+..+++|++|++++| .+..++. .+..+++|+.|++++|++++++.  +..+++|+.|++++|.++++
T Consensus       165 ---------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          165 ---------YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             ---------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEE
T ss_pred             ---------hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--ccccccccEEECcCCcCccc
Confidence                     12334567777777764 3444543 46667777777777777776643  56677777777777777776


Q ss_pred             CCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119          443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       443 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~  511 (543)
                      ....|..+++|++|++++|.+....+..|..+++|++|++++|+++.++.. +..+++|+.|++++|.+.
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            666677777777777777777766666677777777777777777766543 455677777777777655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1e-25  Score=211.38  Aligned_cols=244  Identities=22%  Similarity=0.199  Sum_probs=176.0

Q ss_pred             CCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccc--cchhhh--------cceecEEEccCCCCCC-CChhh--
Q 009119          228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE--YCVEAC--------QLRLSVLDLSNNSLSG-LPPEI--  294 (543)
Q Consensus       228 ~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~--~~~~~~--------~~~L~~L~l~~~~i~~-~~~~l--  294 (543)
                      ..++|+.+++++|.+ .+|..+...  ++.|++++|.+..  ++....        ...|++|++++|.+++ +|..+  
T Consensus        41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            445666667777766 666544433  6677777776643  222221        2336666666665553 44433  


Q ss_pred             cCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCCh
Q 009119          295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS  374 (543)
Q Consensus       295 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~  374 (543)
                      ..+++|++|++++|.+                                                           +.++.
T Consensus       118 ~~l~~L~~L~Ls~N~l-----------------------------------------------------------~~~~~  138 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSW-----------------------------------------------------------ATRDA  138 (312)
T ss_dssp             CCSCCCSEEEEESCBC-----------------------------------------------------------SSSSS
T ss_pred             hcCCCccEEEccCCCC-----------------------------------------------------------cchhH
Confidence            4555555555555544                                                           44444


Q ss_pred             hhhcc-----CCccEEEcCCCcCccCC-hhhccCCCCceeecccCcCCCCC--HHH--hhCCCCCCEEEcCCCCCccc--
Q 009119          375 EIWEA-----GEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWP--DAI--LTSLSSLSCLKLDNNPLRQV--  442 (543)
Q Consensus       375 ~~~~~-----~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~i~~~~--~~~--l~~~~~L~~L~L~~n~l~~~--  442 (543)
                      .+..+     ++|++|++++|.++.++ ..+..+++|++|++++|++.+..  ...  +..+++|++|++++|+++++  
T Consensus       139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  218 (312)
T 1wwl_A          139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG  218 (312)
T ss_dssp             HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred             HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence            44444     78999999999988866 67888999999999999876431  122  37889999999999998843  


Q ss_pred             -CCCccCCCCCccEEEccCCcCCCCCC-CCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCC
Q 009119          443 -PSDGFKDIPMLQILDLSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNL  520 (543)
Q Consensus       443 -~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~  520 (543)
                       ....+..+++|++|++++|.+....+ ..+..+++|++|++++|.++.+|..+.  ++|++|++++|+++.+|. +..+
T Consensus       219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l  295 (312)
T 1wwl_A          219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDEL  295 (312)
T ss_dssp             HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTS
T ss_pred             HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhC
Confidence             33335678899999999999887653 456778999999999999999888776  899999999999999977 8999


Q ss_pred             CCCCeEeCCCCcCCcC
Q 009119          521 TSLTELDLSDNNISAL  536 (543)
Q Consensus       521 ~~L~~L~l~~~~~~~~  536 (543)
                      ++|+.|++++|+++..
T Consensus       296 ~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          296 PQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CEEEEEECTTCTTTCC
T ss_pred             CCCCEEeccCCCCCCC
Confidence            9999999999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.2e-24  Score=204.60  Aligned_cols=254  Identities=18%  Similarity=0.186  Sum_probs=205.0

Q ss_pred             CccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccc-hhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119           46 DLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (543)
Q Consensus        46 ~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (543)
                      +++..+++.+.+.+.+ ..+..+++|++|++++|.+..++ .+|..+++|++|++++|.+...+. +..+++|++|++++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence            4667777777777554 56778889999999999999775 589999999999999999986654 88999999999999


Q ss_pred             CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCc-hh
Q 009119          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ET  202 (543)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~  202 (543)
                      |.++.++.    .++|++|++++|.+..++.  ..+++|+.|++++|.+..+....+..+++|++|++++|.+..++ ..
T Consensus        90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           90 NYVQELLV----GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             SEEEEEEE----CTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             CccccccC----CCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            99987763    3899999999999987743  34788999999999999888777888999999999999997754 33


Q ss_pred             c-cCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhc-ceecEE
Q 009119          203 I-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVL  280 (543)
Q Consensus       203 l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~L  280 (543)
                      + ..+++|+.|++++|.+..++.. ..+++|++|++++|.++.++..+..+++|++|++++|.++.++..... ..|+.+
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF  242 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred             HhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEE
Confidence            4 4688999999999998877543 348899999999999998888888889999999999988876654332 247777


Q ss_pred             EccCCCCC--CCChhhcCCCCCceeecCC
Q 009119          281 DLSNNSLS--GLPPEIGKMTTLRKLLLTG  307 (543)
Q Consensus       281 ~l~~~~i~--~~~~~l~~~~~L~~L~l~~  307 (543)
                      ++++|.+.  .++..+..+++|+.+++.+
T Consensus       243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             EccCCCccCcCHHHHHhccccceEEECCC
Confidence            77777776  2556666677777666653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=4.2e-23  Score=190.38  Aligned_cols=216  Identities=21%  Similarity=0.309  Sum_probs=165.8

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCcccch-hhhc
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~   89 (543)
                      ..++|.+.+++++|..+.               +++++|++++|.+..++. .|.++++|++|++++|.+..++. +|..
T Consensus        10 ~~~~c~~~~l~~ip~~l~---------------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   74 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   74 (276)
T ss_dssp             TEEECTTSCCSSCCSSSC---------------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred             ceEEecCCCccccCCCCC---------------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence            368999999999998773               469999999999998864 89999999999999999997765 7899


Q ss_pred             cCCCCEEEcCCCCCCCCC-hhhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCCcCcc--CCcccccCCCccEE
Q 009119           90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL  165 (543)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--i~~~~~~~~~L~~L  165 (543)
                      +++|++|++++|.+..++ ..+..+++|++|++++|.+..++. .+.++++|++|++++|.+..  +|..+..+++|+.|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence            999999999999998664 578899999999999999997764 68889999999999999886  67888899999999


Q ss_pred             EecCCcccccchhhhccccccc----EEECCCCcCCcCchhccCCCcccEEEccCCccccCCCC-CcCCCCCcEEEcCCC
Q 009119          166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN  240 (543)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~  240 (543)
                      ++++|.+..+....+..+..++    ++++++|.+..++.......+|+.|++++|.+..++.. +..+++|+.+++++|
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            9999988887766666666655    56666666655544443344555555555555544432 233444444444444


Q ss_pred             CC
Q 009119          241 AL  242 (543)
Q Consensus       241 ~l  242 (543)
                      ++
T Consensus       235 ~~  236 (276)
T 2z62_A          235 PW  236 (276)
T ss_dssp             CB
T ss_pred             cc
Confidence            33

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.2e-23  Score=209.23  Aligned_cols=234  Identities=25%  Similarity=0.253  Sum_probs=147.3

Q ss_pred             CCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecC
Q 009119          228 GCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT  306 (543)
Q Consensus       228 ~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~  306 (543)
                      .+++|+.|++++|.+..++ ..+..+++|++|++++|.++....                       +..+++|++|+++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------l~~l~~L~~L~Ls   88 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----------------------LESLSTLRTLDLN   88 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-----------------------CTTCTTCCEEECC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-----------------------cccCCCCCEEEec
Confidence            4457888888888887654 567778888888888877764433                       3344445555555


Q ss_pred             CCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEE
Q 009119          307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD  386 (543)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~  386 (543)
                      +|.+..++.                                        .++++.+++++|.+..++..  .+++|+.|+
T Consensus        89 ~N~l~~l~~----------------------------------------~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~  126 (487)
T 3oja_A           89 NNYVQELLV----------------------------------------GPSIETLHAANNNISRVSCS--RGQGKKNIY  126 (487)
T ss_dssp             SSEEEEEEE----------------------------------------CTTCCEEECCSSCCCCEEEC--CCSSCEEEE
T ss_pred             CCcCCCCCC----------------------------------------CCCcCEEECcCCcCCCCCcc--ccCCCCEEE
Confidence            544432210                                        02233333333333332221  235677777


Q ss_pred             cCCCcCccC-ChhhccCCCCceeecccCcCCCCCHHHhh-CCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCC
Q 009119          387 LSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (543)
Q Consensus       387 l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~  464 (543)
                      +++|.++.+ |..+..+++|+.|++++|.+++..+..+. .+++|++|+|++|.+++++.  +..+++|++|++++|.++
T Consensus       127 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~  204 (487)
T 3oja_A          127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA  204 (487)
T ss_dssp             CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCC
Confidence            777777764 44566777777777777777765555554 57777777777777776643  334677777777777776


Q ss_pred             CCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccc--cccccccCCCCCCeEeCC
Q 009119          465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLS  529 (543)
Q Consensus       465 ~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~--~l~~~l~~~~~L~~L~l~  529 (543)
                      ...+. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.+.  .+|..+..++.|+.++++
T Consensus       205 ~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          205 FMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            64333 66677777777777777777766666777777777777766  445666666666666664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=5.5e-23  Score=204.39  Aligned_cols=229  Identities=21%  Similarity=0.258  Sum_probs=179.5

Q ss_pred             ccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcC
Q 009119           21 LRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVS   99 (543)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~   99 (543)
                      ...+|..+......         +++|++|++++|.+..++ ..|..+++|++|++++|.+...++ +..+++|++|+++
T Consensus        19 ~~~l~~~l~~l~~~---------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls   88 (487)
T 3oja_A           19 DSSLKQALASLRQS---------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN   88 (487)
T ss_dssp             TTTHHHHHHTTSTT---------GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECC
T ss_pred             hhhhHHHHHHhccc---------CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEec
Confidence            33556666544222         568999999999888774 688899999999999998886554 8888899999999


Q ss_pred             CCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccC-CcccccCCCccEEEecCCcccccchh
Q 009119          100 FNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNN  178 (543)
Q Consensus       100 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~i~~~~~~  178 (543)
                      +|.+..++.    .++|++|++++|.+..++..  .+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+...
T Consensus        89 ~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (487)
T 3oja_A           89 NNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (487)
T ss_dssp             SSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred             CCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence            988876653    38889999999888876543  457888999998888865 45677888888899888888876555


Q ss_pred             hhc-ccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCE
Q 009119          179 LIA-SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGT  257 (543)
Q Consensus       179 ~~~-~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~  257 (543)
                      .+. .+++|++|++++|.+..++. ...+++|+.|++++|.+..+|..+..+++|+.|++++|.+..+|..+..+++|+.
T Consensus       163 ~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~  241 (487)
T 3oja_A          163 ELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH  241 (487)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred             HHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCE
Confidence            554 67888888888888877754 3357888888888888888877788888888888888888888887888888888


Q ss_pred             EeCCCCccc
Q 009119          258 LDLHSNQLK  266 (543)
Q Consensus       258 L~l~~n~l~  266 (543)
                      |++++|.+.
T Consensus       242 L~l~~N~l~  250 (487)
T 3oja_A          242 FDLRGNGFH  250 (487)
T ss_dssp             EECTTCCBC
T ss_pred             EEcCCCCCc
Confidence            888888776

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=7.2e-22  Score=181.17  Aligned_cols=133  Identities=29%  Similarity=0.436  Sum_probs=67.8

Q ss_pred             cCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEE
Q 009119          379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (543)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  457 (543)
                      +++|++|++++|.++.++. .+..+++|++|++++|.++.+.+..|..+++|++|++++|.+.+++...|..+++|++|+
T Consensus        84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  163 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR  163 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence            3455555555555555432 234455555555555555555544455555555555555555555444455555555555


Q ss_pred             ccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119          458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       458 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~  511 (543)
                      +++|.+....+..|..+++|++|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus       164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            555555544444445555555555555555544432 334455555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.5e-22  Score=185.59  Aligned_cols=201  Identities=24%  Similarity=0.254  Sum_probs=132.7

Q ss_pred             cCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCC-ChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHH
Q 009119          250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY  328 (543)
Q Consensus       250 ~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  328 (543)
                      ..++++++++++++.++.++... ...++.|++++|.++.+ +..+..+++|++|++++|.+..++..            
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------   73 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD------------   73 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC------------
T ss_pred             cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC------------
Confidence            34445555555555555444332 13355555555555553 34577788888888888877544311            


Q ss_pred             HhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCcee
Q 009119          329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL  408 (543)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L  408 (543)
                                                                      ..+++|++|++++|.++.+|..+..+++|+.|
T Consensus        74 ------------------------------------------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L  105 (290)
T 1p9a_G           74 ------------------------------------------------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL  105 (290)
T ss_dssp             ------------------------------------------------SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred             ------------------------------------------------CCCCcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence                                                            12456777777777777776666677777777


Q ss_pred             ecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119          409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (543)
Q Consensus       409 ~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  488 (543)
                      ++++|+++.+.+..|.++++|++|++++|+++.++...|..+++|+.|++++|.+.......|..+++|++|++++|+++
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            77777777776666677777777777777777776666677777777777777777666666667777777777777777


Q ss_pred             cCchhhhccCCCcEEeCCCCccc
Q 009119          489 EAPTDILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       489 ~l~~~~~~~~~L~~L~l~~~~l~  511 (543)
                      .+|..+..+++|+.|++++|.+.
T Consensus       186 ~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          186 TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccChhhcccccCCeEEeCCCCcc
Confidence            77777777777777777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=4.4e-22  Score=183.99  Aligned_cols=196  Identities=26%  Similarity=0.344  Sum_probs=106.0

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccchhh
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAI   87 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~   87 (543)
                      +.+++++|++++++++|..++               +++++|++++|.+..++ ..|..+++|++|++++|.+..++.. 
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-   73 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLP---------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-   73 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC---------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred             CCccEEECCCCCCCcCCCCCC---------------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence            345566666666666665542               24566666666665542 4556666666666666665555432 


Q ss_pred             hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCccCCcccccCCCccEEE
Q 009119           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD  166 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~  166 (543)
                      ..+++|++|++++|.+..+|..+..+++|++|++++|+++.++ ..+..+++|++|++++|.+.                
T Consensus        74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~----------------  137 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK----------------  137 (290)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC----------------
T ss_pred             CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC----------------
Confidence            4555556666655555555555555555555555555555444 33445555555555555554                


Q ss_pred             ecCCcccccchhhhcccccccEEECCCCcCCcCchh-ccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC
Q 009119          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (543)
Q Consensus       167 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~  243 (543)
                             .+....+..+++|+.|++++|.+..++.. +..+++|+.|++++|.+..+|..+...+.|+.+++.+|++.
T Consensus       138 -------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          138 -------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             -------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             -------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence                   44444444444555555555555444432 34455555555555555555555555555666666655544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=2.1e-22  Score=185.63  Aligned_cols=156  Identities=25%  Similarity=0.309  Sum_probs=84.1

Q ss_pred             cCCccEEEcCCCcCccCC-hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccC-CCccCCCCCccEE
Q 009119          379 AGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGFKDIPMLQIL  456 (543)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L  456 (543)
                      +++|++|++++|.++.++ ..+..+++|++|++++|.++.+....+.++++|++|++++|.+.++. ...+..+++|++|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence            445555555555555433 33455555555555555555544444555555555555555555432 3345555555555


Q ss_pred             EccCCcCCCCCCCCCCCCCcCc----eeecCCCccccCchhhhccCCCcEEeCCCCccccccc-cccCCCCCCeEeCCCC
Q 009119          457 DLSYNIASLPENPPFSSLPHLQ----ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDN  531 (543)
Q Consensus       457 ~l~~n~~~~~~~~~~~~~~~L~----~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~  531 (543)
                      ++++|.+.......+..+++|+    +|++++|.++.++.......+|+.|++++|+++.+|. .+..+++|+.|++++|
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            5555555544434444444444    5566666666555444444566666666666665542 3455666666666666


Q ss_pred             cCC
Q 009119          532 NIS  534 (543)
Q Consensus       532 ~~~  534 (543)
                      ++.
T Consensus       235 ~~~  237 (276)
T 2z62_A          235 PWD  237 (276)
T ss_dssp             CBC
T ss_pred             ccc
Confidence            655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=2e-21  Score=178.23  Aligned_cols=181  Identities=31%  Similarity=0.505  Sum_probs=147.8

Q ss_pred             cccccceeeeCCCCCCCCCh-hhhccCCccEEEcCCCcCccCChh-hccCCCCceeecccCcCCCCCHHHhhCCCCCCEE
Q 009119          355 LSVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL  432 (543)
Q Consensus       355 ~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L  432 (543)
                      .+..+++++++++.+..++. .+..+++|++|++++|.++.++.. +..+++|++|++++|.++.+....+.++++|++|
T Consensus        35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  114 (270)
T 2o6q_A           35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL  114 (270)
T ss_dssp             CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred             CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence            34578888888888887765 566788888888888888887654 5778888888888888888887778888888888


Q ss_pred             EcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119          433 KLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       433 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~  511 (543)
                      ++++|.++.++...|..+++|++|++++|.+.......|..+++|++|++++|.++.++.. +..+++|++|++++|+++
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence            8888888888877788888888888888888877776788888888888888888877654 667888888888888888


Q ss_pred             cccc-cccCCCCCCeEeCCCCcCCc
Q 009119          512 SIPE-GFKNLTSLTELDLSDNNISA  535 (543)
Q Consensus       512 ~l~~-~l~~~~~L~~L~l~~~~~~~  535 (543)
                      .+|. .+..+++|+.|++++|++..
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          195 RVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCHHHhccccCCCEEEecCCCeeC
Confidence            8754 47788888888888888763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=8.8e-22  Score=183.91  Aligned_cols=193  Identities=20%  Similarity=0.321  Sum_probs=107.7

Q ss_pred             ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (543)
                      +++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence            445666666666666554 45566666666666666665544 556666666666666655543 455556666666666


Q ss_pred             CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc
Q 009119          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (543)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (543)
                      |.++.++. +..+++|++|++++|.+..++. +..+++|+.|++++|.                        +..++. +
T Consensus       117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~------------------------l~~~~~-l  169 (308)
T 1h6u_A          117 TQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ------------------------VSDLTP-L  169 (308)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC------------------------CCCCGG-G
T ss_pred             CCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc------------------------CCCChh-h
Confidence            65555542 4555555555555555554432 4444455555554444                        444433 4


Q ss_pred             cCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccccc
Q 009119          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY  268 (543)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~  268 (543)
                      ..+++|+.|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++++|.++..
T Consensus       170 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECC
T ss_pred             cCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecC
Confidence            445555555555555554433 4455566666666666655542 55666666666666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=2.7e-21  Score=180.64  Aligned_cols=198  Identities=25%  Similarity=0.331  Sum_probs=174.3

Q ss_pred             HHHhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch
Q 009119            6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA   85 (543)
Q Consensus         6 ~~~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~   85 (543)
                      ...+.+++|++++++++++| .+ ..            +++|++|++++|.+..++. +..+++|++|++++|.+..++ 
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~~-~~------------l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-  101 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIE-GV-QY------------LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-  101 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TG-GG------------CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred             HHcCCcCEEEeeCCCccCch-hh-hc------------cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-
Confidence            45688999999999999987 33 22            7889999999999999877 999999999999999999875 


Q ss_pred             hhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEE
Q 009119           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL  165 (543)
Q Consensus        86 ~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L  165 (543)
                      .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++. +..+++|+.|
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  178 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL  178 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEE
Confidence            68999999999999999998865 8899999999999999998865 8899999999999999998866 8899999999


Q ss_pred             EecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCC
Q 009119          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS  225 (543)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~  225 (543)
                      ++++|.+..+..  +..+++|++|++++|.+..++. +..+++|+.|++++|.+...|..
T Consensus       179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEE
T ss_pred             ECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCee
Confidence            999999987765  7888899999999999887774 77888899999988888766543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1.2e-21  Score=179.84  Aligned_cols=139  Identities=22%  Similarity=0.303  Sum_probs=82.6

Q ss_pred             hccCCccEEEcCCCcCccCChh-hccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccE
Q 009119          377 WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI  455 (543)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  455 (543)
                      ..+++|++|++++|.++.++.. +..+++|++|++++|.++++....+..+++|++|++++|++++++...|..+++|++
T Consensus       106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  185 (272)
T 3rfs_A          106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD  185 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence            3455666666666666665432 455666666666666666666555566666666666666666655555566666666


Q ss_pred             EEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccc-cccccccCCC
Q 009119          456 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLT  521 (543)
Q Consensus       456 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~  521 (543)
                      |++++|.+....+..+..+++|++|++++|.+..      .++.|+.++++.|.+. .+|..+..++
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             EECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            6666666665555555666666666666665542      2445666666666555 3455444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=8.7e-22  Score=177.24  Aligned_cols=195  Identities=18%  Similarity=0.244  Sum_probs=108.5

Q ss_pred             CccEEEcCccccccchH-HhcCCCCCCEEEcCCCc-Ccccch-hhhccCCCCEEEcCC-CCCCCCC-hhhcccCCccEEe
Q 009119           46 DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIP-DEIGSATALVKFD  120 (543)
Q Consensus        46 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~-l~~~~~-~~~~~~~L~~L~l~~-~~~~~l~-~~~~~~~~L~~L~  120 (543)
                      ++++|++++|.++.++. .|+++++|++|++++|. +..++. +|..+++|++|++++ |.++.++ ..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            46666666666666653 56666666666666664 555543 556666666666665 5555443 2455555566666


Q ss_pred             cCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCC-cccccchhhhccccccc-EEECCCCcCCc
Q 009119          121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNG  198 (543)
Q Consensus       121 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~-~L~l~~~~~~~  198 (543)
                      +++|.++.+|. +..+++|+                    .|+.|++++| .+..+....+..+++|+ ++++++|.+..
T Consensus       112 l~~n~l~~lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS  170 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred             CCCCCCccccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence            55555555543 44444444                    0115555555 45444444455555555 55555555555


Q ss_pred             CchhccCCCcccEEEccCCc-cccCC-CCCcCC-CCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCC
Q 009119          199 MPETIGSLSRLIRLDLHQNR-ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (543)
Q Consensus       199 ~~~~l~~~~~L~~L~l~~~~-~~~~~-~~~~~~-~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n  263 (543)
                      ++......++|+.|++++|+ +..++ ..+..+ ++|+.+++++|.++.+|..  .+++|+.|++.++
T Consensus       171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            54433333556666666663 55553 334555 6666666666666665553  4566666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=7.9e-21  Score=172.20  Aligned_cols=177  Identities=30%  Similarity=0.422  Sum_probs=161.8

Q ss_pred             ccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (543)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~  436 (543)
                      ..+++++++++++.+|..+.  +.++.|++++|.++.++. .+..+++|++|++++|.++++.+..|.++++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            56789999999999987764  689999999999998654 688999999999999999999988899999999999999


Q ss_pred             CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCch-hhhccCCCcEEeCCCCcccccc-
Q 009119          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-  514 (543)
Q Consensus       437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~l~-  514 (543)
                      |.++.++...|..+++|++|++++|.+....+..|..+++|++|++++|.++.++. .+..+++|++|++++|+++.++ 
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            99999998889999999999999999998887788999999999999999998876 5788999999999999999885 


Q ss_pred             ccccCCCCCCeEeCCCCcCCcC
Q 009119          515 EGFKNLTSLTELDLSDNNISAL  536 (543)
Q Consensus       515 ~~l~~~~~L~~L~l~~~~~~~~  536 (543)
                      ..+..+++|+.|++++|++..-
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHhCCCCCCEEEeeCCceeCC
Confidence            4789999999999999999754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=1.2e-21  Score=176.45  Aligned_cols=201  Identities=16%  Similarity=0.256  Sum_probs=140.8

Q ss_pred             cccchHHhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCC-CCCCCh-hhcccCCccEEecCC-CCccccccc
Q 009119           57 IEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELPSS  132 (543)
Q Consensus        57 ~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~-~~~l~~-~~~~~~~L~~L~l~~-~~~~~~~~~  132 (543)
                      ++.+|. +.  +++++|++++|.+..++. +|..+++|++|++++|. ++.++. .+.++++|++|++++ |.++.++. 
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-   98 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-   98 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-
Confidence            555655 33  366777777776666654 56666666666666665 555443 455566666666665 55554442 


Q ss_pred             ccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhccccccc---EEECCCC-cCCcCch-hccCCC
Q 009119          133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT---ELIASKN-LLNGMPE-TIGSLS  207 (543)
Q Consensus       133 ~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~l~~~~  207 (543)
                                           ..+..+++|++|++++|.+..++.  +..+++|+   +|++++| .+..++. .+..++
T Consensus        99 ---------------------~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~  155 (239)
T 2xwt_C           99 ---------------------DALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC  155 (239)
T ss_dssp             ---------------------TSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred             ---------------------HHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchh
Confidence                                 234444455555555554444433  45556666   9999999 8888775 478899


Q ss_pred             ccc-EEEccCCccccCCCCCcCCCCCcEEEcCCCC-CCCCC-ccccCC-CCCCEEeCCCCcccccchhhhcceecEEEcc
Q 009119          208 RLI-RLDLHQNRILSIPSSISGCCSLAEFYMGNNA-LSALP-AELGKL-SKLGTLDLHSNQLKEYCVEACQLRLSVLDLS  283 (543)
Q Consensus       208 ~L~-~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~-l~~l~-~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~  283 (543)
                      +|+ .|++++|.+..+|......++|++|++++|. ++.++ ..+..+ ++|+.|++++|.++.++.. ....++.|+++
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~  234 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR  234 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred             cceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence            999 9999999999888765455899999999995 98775 467888 9999999999999988776 44569999988


Q ss_pred             CC
Q 009119          284 NN  285 (543)
Q Consensus       284 ~~  285 (543)
                      ++
T Consensus       235 ~~  236 (239)
T 2xwt_C          235 NT  236 (239)
T ss_dssp             TC
T ss_pred             Cc
Confidence            76

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=1.4e-20  Score=172.79  Aligned_cols=179  Identities=28%  Similarity=0.385  Sum_probs=161.9

Q ss_pred             cccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (543)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~  436 (543)
                      ..++.+++.++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++++....+.++++|++|++++
T Consensus        41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            67899999999988775 4778999999999999999876 688999999999999999999988889999999999999


Q ss_pred             CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCcccccc-
Q 009119          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP-  514 (543)
Q Consensus       437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~-  514 (543)
                      |++++++...|..+++|++|++++|.+....+..+..+++|++|++++|+++.++.. +..+++|+.|++++|.++.++ 
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            999999888899999999999999999988777789999999999999999987655 578999999999999999885 


Q ss_pred             ccccCCCCCCeEeCCCCcCCcCC
Q 009119          515 EGFKNLTSLTELDLSDNNISALP  537 (543)
Q Consensus       515 ~~l~~~~~L~~L~l~~~~~~~~~  537 (543)
                      ..+..+++|+.|++++|++..-.
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCT
T ss_pred             HHHhCCcCCCEEEccCCCccccC
Confidence            55899999999999999987433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.8e-21  Score=181.10  Aligned_cols=226  Identities=22%  Similarity=0.230  Sum_probs=161.2

Q ss_pred             CCCCEEeCCCCcccc-----cchhhhcceecEEEccCCCCCC-CChhh--cCCCCCceeecCCCCcCcccccccCCCcHH
Q 009119          253 SKLGTLDLHSNQLKE-----YCVEACQLRLSVLDLSNNSLSG-LPPEI--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPA  324 (543)
Q Consensus       253 ~~L~~L~l~~n~l~~-----~~~~~~~~~L~~L~l~~~~i~~-~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  324 (543)
                      ..++.+.+.++.+..     +........|++|++++|.+.+ .|..+  ..+++|++|++++|.+.....         
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~---------  134 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS---------  134 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence            456667777666542     1122222348888888887776 45555  778888888888887643110         


Q ss_pred             HHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCC-hhhhccCCccEEEcCCCcCccCC-hhhccC
Q 009119          325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP-SEIWEAGEITKLDLSRNSIQELP-PELSSC  402 (543)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~  402 (543)
                                                                    .++ ..+..+++|++|++++|.++.++ ..+..+
T Consensus       135 ----------------------------------------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A          135 ----------------------------------------------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             ----------------------------------------------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ----------------------------------------------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence                                                          000 12234677888888888887754 467788


Q ss_pred             CCCceeecccCcCCCC---C-HHHhhCCCCCCEEEcCCCCCcccCCC---ccCCCCCccEEEccCCcCCCCCCCCCCCC-
Q 009119          403 ASLQTLILSRNKIKDW---P-DAILTSLSSLSCLKLDNNPLRQVPSD---GFKDIPMLQILDLSYNIASLPENPPFSSL-  474 (543)
Q Consensus       403 ~~L~~L~l~~~~i~~~---~-~~~l~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-  474 (543)
                      ++|++|++++|++.+.   . ...+..+++|++|++++|+++.++..   .+..+++|++|++++|.+....+..+..+ 
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            8888888888876531   1 12235678888888888888754432   24567888888888888887766555555 


Q ss_pred             --CcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCcC
Q 009119          475 --PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL  536 (543)
Q Consensus       475 --~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~  536 (543)
                        ++|++|++++|+++.+|..+.  ++|+.|++++|+++.+|. +..+++|+.|++++|++++-
T Consensus       249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSCC
T ss_pred             CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCCC
Confidence              799999999999998887764  899999999999998865 78899999999999999753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.2e-21  Score=189.91  Aligned_cols=84  Identities=21%  Similarity=0.246  Sum_probs=46.1

Q ss_pred             ccCccEEEcCcccccc-----chHHhcCCCCCCEEEcCCCcCc----ccchh-------hhccCCCCEEEcCCCCCCC--
Q 009119           44 AVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLS----ELPAA-------IGELHMLKSLDVSFNSIMK--  105 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~l~----~~~~~-------~~~~~~L~~L~l~~~~~~~--  105 (543)
                      +++|++|++++|.+..     ++..+..+++|++|++++|.+.    .+|..       +..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4556666666666552     2233556666666666665433    12222       2455666666666665553  


Q ss_pred             ---CChhhcccCCccEEecCCCCcc
Q 009119          106 ---IPDEIGSATALVKFDCSSNQLK  127 (543)
Q Consensus       106 ---l~~~~~~~~~L~~L~l~~~~~~  127 (543)
                         ++..+..+++|++|++++|.+.
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCC
Confidence               3445555666666666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=2e-21  Score=188.30  Aligned_cols=240  Identities=20%  Similarity=0.248  Sum_probs=162.3

Q ss_pred             hHHHHHHhhcCeeecCCCcccccch-hhhhcccccCCCCccccccCccEEEcCccccc----cchH-------HhcCCCC
Q 009119            2 DRILKAARTSGSLNLSNRSLRDVPN-EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE----KLKE-------DLRNLPL   69 (543)
Q Consensus         2 ~~~~~~~~~~~~l~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~l~~-------~~~~~~~   69 (543)
                      .++++..+++++|+++++.++.... .+...+.         .+++|++|++++|.+.    .+|.       .+..+++
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---------~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~   95 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA---------SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK   95 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTT---------TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHH---------hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence            4678888999999999999985433 3333222         3889999999998554    2233       3589999


Q ss_pred             CCEEEcCCCcCcc-----cchhhhccCCCCEEEcCCCCCCC-----CChhhccc---------CCccEEecCCCCcc--c
Q 009119           70 LTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSA---------TALVKFDCSSNQLK--E  128 (543)
Q Consensus        70 L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~---------~~L~~L~l~~~~~~--~  128 (543)
                      |++|++++|.+..     ++..+..+++|++|++++|.+..     ++..+..+         ++|++|++++|.+.  .
T Consensus        96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A           96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence            9999999999885     67789999999999999999872     23334444         88999999888886  3


Q ss_pred             cc---ccccCCCCCCEEEccCCcCcc------CCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcC
Q 009119          129 LP---SSLGRCLNLSDFKASNNCITS------LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM  199 (543)
Q Consensus       129 ~~---~~~~~~~~L~~L~l~~~~~~~------i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~  199 (543)
                      ++   ..+..+++|++|++++|.+..      ++..+..+++|+.|++++|.++....                   ..+
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~-------------------~~l  236 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS-------------------SAL  236 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH-------------------HHH
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH-------------------HHH
Confidence            33   345566777777777776661      22255666666666666666532110                   123


Q ss_pred             chhccCCCcccEEEccCCcccc-----CCCCC--cCCCCCcEEEcCCCCCCC-----CCccc-cCCCCCCEEeCCCCccc
Q 009119          200 PETIGSLSRLIRLDLHQNRILS-----IPSSI--SGCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLK  266 (543)
Q Consensus       200 ~~~l~~~~~L~~L~l~~~~~~~-----~~~~~--~~~~~L~~l~l~~~~l~~-----l~~~l-~~~~~L~~L~l~~n~l~  266 (543)
                      +..+..+++|+.|++++|.+..     ++..+  ..+++|+.|++++|.++.     +|..+ .++++|++|++++|.++
T Consensus       237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            3344445555555555555542     22333  226667777777776664     56655 55788888888888887


Q ss_pred             ccc
Q 009119          267 EYC  269 (543)
Q Consensus       267 ~~~  269 (543)
                      ...
T Consensus       317 ~~~  319 (386)
T 2ca6_A          317 EED  319 (386)
T ss_dssp             TTS
T ss_pred             cch
Confidence            544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=3.9e-21  Score=184.30  Aligned_cols=244  Identities=20%  Similarity=0.220  Sum_probs=167.2

Q ss_pred             eeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-----HHhcCCC-CCCEEEcCCCcCccc-ch
Q 009119           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PA   85 (543)
Q Consensus        13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-----~~~~~~~-~L~~L~l~~~~l~~~-~~   85 (543)
                      .++++++++.....+....            .++|++|++++|.+...+     +.|..++ +|++|++++|.+... +.
T Consensus         2 ~~~ls~n~~~~~~~~~~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~   69 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSI------------PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD   69 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred             ccccccccchHHHHHHHhC------------CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence            3577888888655555543            455999999999888654     6788888 899999999988854 44


Q ss_pred             hhhcc-----CCCCEEEcCCCCCCCCC-hh----hccc-CCccEEecCCCCcccccc-----cccC-CCCCCEEEccCCc
Q 009119           86 AIGEL-----HMLKSLDVSFNSIMKIP-DE----IGSA-TALVKFDCSSNQLKELPS-----SLGR-CLNLSDFKASNNC  148 (543)
Q Consensus        86 ~~~~~-----~~L~~L~l~~~~~~~l~-~~----~~~~-~~L~~L~l~~~~~~~~~~-----~~~~-~~~L~~L~l~~~~  148 (543)
                      .+..+     ++|++|++++|.++... ..    +..+ ++|++|++++|.++..+.     .+.. ..+|++|++++|.
T Consensus        70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            55554     88999999999887443 32    4444 789999999998885542     2334 3688888888888


Q ss_pred             Ccc-----CCcccccCC-CccEEEecCCcccccchhhhc----cc-ccccEEECCCCcCCc-----CchhccC-CCcccE
Q 009119          149 ITS-----LPEDLADCS-KMSKLDVEGNKLTVLSNNLIA----SW-TMLTELIASKNLLNG-----MPETIGS-LSRLIR  211 (543)
Q Consensus       149 ~~~-----i~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~----~~-~~L~~L~l~~~~~~~-----~~~~l~~-~~~L~~  211 (543)
                      +..     ++..+...+ +|++|++++|.+.......+.    .. ++|++|++++|.+..     ++..+.. .++|+.
T Consensus       150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~  229 (362)
T 3goz_A          150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS  229 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred             CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence            873     334445555 888888888888766654333    33 578888888888765     4555544 357888


Q ss_pred             EEccCCccccCC-----CCCcCCCCCcEEEcCCCCCCCC--------CccccCCCCCCEEeCCCCccccc
Q 009119          212 LDLHQNRILSIP-----SSISGCCSLAEFYMGNNALSAL--------PAELGKLSKLGTLDLHSNQLKEY  268 (543)
Q Consensus       212 L~l~~~~~~~~~-----~~~~~~~~L~~l~l~~~~l~~l--------~~~l~~~~~L~~L~l~~n~l~~~  268 (543)
                      |++++|.+...+     ..+..+++|+.|++++|.+..+        +..+..+++|+.|++++|.+...
T Consensus       230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            888888776442     2345667777777777763322        23455666777777777776543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=3.3e-21  Score=184.80  Aligned_cols=131  Identities=24%  Similarity=0.263  Sum_probs=62.8

Q ss_pred             CccEEEcCCCcCcc-----CChhhccCC-CCceeecccCcCCCCCHHH----hhCC-CCCCEEEcCCCCCcccCCC----
Q 009119          381 EITKLDLSRNSIQE-----LPPELSSCA-SLQTLILSRNKIKDWPDAI----LTSL-SSLSCLKLDNNPLRQVPSD----  445 (543)
Q Consensus       381 ~L~~L~l~~~~l~~-----l~~~~~~~~-~L~~L~l~~~~i~~~~~~~----l~~~-~~L~~L~L~~n~l~~~~~~----  445 (543)
                      +|++|++++|.+++     ++..+...+ +|++|++++|++++.....    +..+ ++|++|++++|.+++.+..    
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~  218 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY  218 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence            45555555555442     222333333 5555555555555544322    2233 3555555555555542221    


Q ss_pred             ccCC-CCCccEEEccCCcCCCCCC----CCCCCCCcCceeecCCCccc--------cCchhhhccCCCcEEeCCCCccc
Q 009119          446 GFKD-IPMLQILDLSYNIASLPEN----PPFSSLPHLQELYLRRMQLR--------EAPTDILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       446 ~~~~-~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~~~l~--------~l~~~~~~~~~L~~L~l~~~~l~  511 (543)
                      ++.. .++|++|++++|.++....    ..+..+++|++|++++|.+.        .++..+..+++|+.|++++|++.
T Consensus       219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            1222 3455555555555544322    22345555666666666522        22233445566666666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.6e-20  Score=178.63  Aligned_cols=240  Identities=16%  Similarity=0.187  Sum_probs=142.6

Q ss_pred             ccEEEcCccccccchHHhcCC--CCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCC--CChhhcccCCccEEecC
Q 009119           47 LQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCS  122 (543)
Q Consensus        47 L~~L~l~~~~~~~l~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~  122 (543)
                      ++.++++++.+.  +..+..+  ++++.+++++|.+...+..+..+++|++|++++|.+..  ++..+..+++|++|+++
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~  126 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE  126 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence            566666666554  3344444  66666666666666544445556667777776666552  55556666677777776


Q ss_pred             CCCcc-cccccccCCCCCCEEEccCC-cCc--cCCcccccCCCccEEEecCC-ccccc-chhhhcccc-cccEEECCCCc
Q 009119          123 SNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVL-SNNLIASWT-MLTELIASKNL  195 (543)
Q Consensus       123 ~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~--~i~~~~~~~~~L~~L~l~~~-~i~~~-~~~~~~~~~-~L~~L~l~~~~  195 (543)
                      +|.+. ..+..+..+++|++|++++| .++  .++..+..+++|++|++++| .++.. ....+..++ +|++|++++|.
T Consensus       127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            66665 34455666667777777666 454  24444566667777777766 66542 123355566 67777777763


Q ss_pred             --C--CcCchhccCCCcccEEEccCCc-cc-cCCCCCcCCCCCcEEEcCCCC-CC-CCCccccCCCCCCEEeCCCCcccc
Q 009119          196 --L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LS-ALPAELGKLSKLGTLDLHSNQLKE  267 (543)
Q Consensus       196 --~--~~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~l~l~~~~-l~-~l~~~l~~~~~L~~L~l~~n~l~~  267 (543)
                        +  ..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. +. .....+..+++|++|++++| +..
T Consensus       207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence              2  3345555566777777777776 33 334456666777777777774 22 11124566777777777777 433


Q ss_pred             cchhhhcceecEEEccCCCCCC
Q 009119          268 YCVEACQLRLSVLDLSNNSLSG  289 (543)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~i~~  289 (543)
                      .........+..|++++|.+++
T Consensus       286 ~~~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          286 GTLQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             TCHHHHHHHSTTSEESCCCSCC
T ss_pred             HHHHHHHhhCcceEEecccCcc
Confidence            2222222335666666666666

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=8.2e-20  Score=168.95  Aligned_cols=174  Identities=25%  Similarity=0.363  Sum_probs=156.7

Q ss_pred             cccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (543)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~  436 (543)
                      ..++.++++++.+..++. +..+++|++|++++|.+++++. +..+++|+.|++++|.++++..  +..+++|++|++++
T Consensus        46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH  121 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT
T ss_pred             CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC
Confidence            678999999999998864 7789999999999999999886 8999999999999999998654  79999999999999


Q ss_pred             CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccccccc
Q 009119          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG  516 (543)
Q Consensus       437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~  516 (543)
                      |++.+++  .+..+++|++|++++|.+...  ..+..+++|++|++++|.++.++. +..+++|+.|++++|.++.++. 
T Consensus       122 n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-  195 (291)
T 1h6t_A          122 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-  195 (291)
T ss_dssp             SCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred             CcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-
Confidence            9999873  588899999999999999886  568899999999999999998876 8889999999999999999965 


Q ss_pred             ccCCCCCCeEeCCCCcCCcCCCCc
Q 009119          517 FKNLTSLTELDLSDNNISALPPEL  540 (543)
Q Consensus       517 l~~~~~L~~L~l~~~~~~~~~~~~  540 (543)
                      +..+++|+.|++++|++...|...
T Consensus       196 l~~l~~L~~L~l~~n~i~~~~~~~  219 (291)
T 1h6t_A          196 LAGLKNLDVLELFSQECLNKPINH  219 (291)
T ss_dssp             GTTCTTCSEEEEEEEEEECCCEEC
T ss_pred             hccCCCCCEEECcCCcccCCcccc
Confidence            899999999999999988766543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=6.6e-20  Score=171.76  Aligned_cols=196  Identities=17%  Similarity=0.140  Sum_probs=96.1

Q ss_pred             CCCCEEEcCCCcCc-ccchhh--hccCCCCEEEcCCCCCCCC-C----hhhcccCCccEEecCCCCccccc-ccccCCCC
Q 009119           68 PLLTVLNVSHNKLS-ELPAAI--GELHMLKSLDVSFNSIMKI-P----DEIGSATALVKFDCSSNQLKELP-SSLGRCLN  138 (543)
Q Consensus        68 ~~L~~L~l~~~~l~-~~~~~~--~~~~~L~~L~l~~~~~~~l-~----~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~  138 (543)
                      ++|++|++++|.+. ..|..+  ..+++|++|++++|.+... +    ..+..+++|++|++++|.+..++ ..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            44566666655555 233333  5555566666655555531 1    12234555555555555555433 34555555


Q ss_pred             CCEEEccCCcCcc---C--CcccccCCCccEEEecCCcccccchh---hhcccccccEEECCCCcCCcC-chhccCC---
Q 009119          139 LSDFKASNNCITS---L--PEDLADCSKMSKLDVEGNKLTVLSNN---LIASWTMLTELIASKNLLNGM-PETIGSL---  206 (543)
Q Consensus       139 L~~L~l~~~~~~~---i--~~~~~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~L~~L~l~~~~~~~~-~~~l~~~---  206 (543)
                      |++|++++|.+..   +  +..+..+++|++|++++|.++.+...   .+..+++|++|++++|.+... |..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            5555555555431   1  11224455555555555555433221   233445555555555555443 3333333   


Q ss_pred             CcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCccc
Q 009119          207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (543)
Q Consensus       207 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~  266 (543)
                      ++|+.|++++|.+..+|..+.  ++|++|++++|.++.+|. +..+++|+.|++++|.++
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred             CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence            355555555555555544432  455555555555554433 344455555555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=5.2e-19  Score=160.17  Aligned_cols=160  Identities=31%  Similarity=0.463  Sum_probs=146.7

Q ss_pred             CCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEcc
Q 009119          380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (543)
Q Consensus       380 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  459 (543)
                      ...++++++++.++.+|..+.  ++++.|++++|.++.+....+.++++|++|++++|.+.++....|..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            467899999999999997654  689999999999999998889999999999999999999988889999999999999


Q ss_pred             CCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccccccc-cccCCCCCCeEeCCCCcCCcCC
Q 009119          460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALP  537 (543)
Q Consensus       460 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~  537 (543)
                      +|.+....+..|..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++. .+..+++|+.|++++|+++.+|
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            9999988888899999999999999999988765 5779999999999999999865 6899999999999999999998


Q ss_pred             CCcC
Q 009119          538 PELV  541 (543)
Q Consensus       538 ~~~~  541 (543)
                      +..+
T Consensus       172 ~~~~  175 (251)
T 3m19_A          172 HGAF  175 (251)
T ss_dssp             TTTT
T ss_pred             HHHH
Confidence            8654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=3.1e-19  Score=170.07  Aligned_cols=233  Identities=20%  Similarity=0.254  Sum_probs=177.1

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCc-ccch-hhh
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS-ELPA-AIG   88 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~-~~~~-~~~   88 (543)
                      ++++|+++++++||..++               +++++|+|++|.++.++. +|+++++|++|+|++|.+. .++. +|.
T Consensus        12 ~~v~C~~~~Lt~iP~~l~---------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~   76 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS   76 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC---------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred             CEEEecCCCCCccCcCcC---------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence            679999999999998874               469999999999999974 7999999999999999875 4554 788


Q ss_pred             ccCCCCE-EEcCCCCCCCC-ChhhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccC-CcCccCCc-ccccC-CCc
Q 009119           89 ELHMLKS-LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPE-DLADC-SKM  162 (543)
Q Consensus        89 ~~~~L~~-L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~~i~~-~~~~~-~~L  162 (543)
                      ++++++. +.+.+|++..+ +..+..+++|++|++++|++..++. .+....++..+++.+ +.+..++. .+..+ ..+
T Consensus        77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l  156 (350)
T 4ay9_X           77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES  156 (350)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred             cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence            8888775 55566888876 4568889999999999999987764 345566778888865 45665543 34444 468


Q ss_pred             cEEEecCCcccccchhhhcccccccEEECCC-CcCCcCch-hccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCC
Q 009119          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASK-NLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (543)
Q Consensus       163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~  240 (543)
                      +.|++++|.+..+...++.. .+++++++.+ |.++.+|. .+..+++|+.|++++|.++.+|..  .+.+|+.|...++
T Consensus       157 ~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~  233 (350)
T 4ay9_X          157 VILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST  233 (350)
T ss_dssp             EEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC
T ss_pred             hhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC
Confidence            88888888888887775543 5688888864 67777775 467888888888888888888753  2566777766554


Q ss_pred             -CCCCCCccccCCCCCCEEeCCCC
Q 009119          241 -ALSALPAELGKLSKLGTLDLHSN  263 (543)
Q Consensus       241 -~l~~l~~~l~~~~~L~~L~l~~n  263 (543)
                       .++.+|. +..+++|+.+++.++
T Consensus       234 ~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          234 YNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             CCcCcCCC-chhCcChhhCcCCCC
Confidence             4556663 677888888887653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=8.9e-19  Score=155.92  Aligned_cols=153  Identities=33%  Similarity=0.444  Sum_probs=124.2

Q ss_pred             CccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (543)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  460 (543)
                      ..+.++.+++.++.+|..+.  ++|+.|++++|.++.+.+..|.++++|++|+|++|++..++...|..+++|++|++++
T Consensus        20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            35667777777777775443  7788888888888888777778888888888888888888777788888888888888


Q ss_pred             CcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccccc-ccccCCCCCCeEeCCCCcCCc
Q 009119          461 NIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISA  535 (543)
Q Consensus       461 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~~~~  535 (543)
                      |.+.......|..+++|++|++++|+++.+|..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|++..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            888877777778888888888888888888888888888888888888888875 457888888888888888763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=8.3e-19  Score=175.48  Aligned_cols=185  Identities=31%  Similarity=0.438  Sum_probs=122.9

Q ss_pred             CccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCC
Q 009119           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (543)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~  125 (543)
                      +++.|++++|.+..+|..+  .++|+.|++++|.+..+|   ..+++|++|++++|.++.+|. +..  +|++|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence            5677777777666665544  256777777777666666   345667777777776666665 433  67777777777


Q ss_pred             cccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccC
Q 009119          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (543)
Q Consensus       126 ~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (543)
                      ++.+|.   .+++|++|++++|.++.+|.   .+++|+.|++++|.+..++.  +.  ++|++|++++|.++.+|. +..
T Consensus       132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~~  200 (571)
T 3cvr_A          132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VPV  200 (571)
T ss_dssp             CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred             CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HHH
Confidence            666665   45677777777777766654   45667777777777666555  33  667777777777776666 433


Q ss_pred             CCcc-------cEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC-CCCccccC
Q 009119          206 LSRL-------IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGK  251 (543)
Q Consensus       206 ~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~l~~~l~~  251 (543)
                        +|       +.|++++|.+..+|..+..+++|+.|++++|.+. ..|..+..
T Consensus       201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence              55       8888888888888777777888888888888877 44444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=7.9e-19  Score=162.34  Aligned_cols=169  Identities=22%  Similarity=0.346  Sum_probs=90.6

Q ss_pred             ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (543)
                      +++|++|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus        45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH  121 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred             cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence            445666666666655553 25556666666666666555544 5556666666666665555432 55555666666665


Q ss_pred             CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc
Q 009119          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (543)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (543)
                      |.+..+ ..+..+++|++|++++|.+..+ ..+..+++|+.|++++|.+..+..  +..+++|++|++++|.+..++. +
T Consensus       122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l  196 (291)
T 1h6t_A          122 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L  196 (291)
T ss_dssp             SCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred             CcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-h
Confidence            555554 2444555555555555555554 345555555555555555554433  4444555555555555544432 4


Q ss_pred             cCCCcccEEEccCCccc
Q 009119          204 GSLSRLIRLDLHQNRIL  220 (543)
Q Consensus       204 ~~~~~L~~L~l~~~~~~  220 (543)
                      ..+++|+.|++++|.+.
T Consensus       197 ~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          197 AGLKNLDVLELFSQECL  213 (291)
T ss_dssp             TTCTTCSEEEEEEEEEE
T ss_pred             ccCCCCCEEECcCCccc
Confidence            44455555555554444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=2.3e-19  Score=163.15  Aligned_cols=172  Identities=22%  Similarity=0.286  Sum_probs=149.0

Q ss_pred             ccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCC
Q 009119          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (543)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n  437 (543)
                      .+..++++++.++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+++++.+  +.++++|++|++++|
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence            4566777888888776 5777899999999999999988 68899999999999999999877  889999999999999


Q ss_pred             CCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccc
Q 009119          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF  517 (543)
Q Consensus       438 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l  517 (543)
                      ++++++..  .. ++|++|++++|.++..  ..+..+++|++|++++|+++.++ .+..+++|+.|++++|.++.+ ..+
T Consensus        96 ~l~~l~~~--~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l  168 (263)
T 1xeu_A           96 RLKNLNGI--PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGL  168 (263)
T ss_dssp             CCSCCTTC--CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred             ccCCcCcc--cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence            99987653  33 8999999999998875  35889999999999999999886 688899999999999999988 678


Q ss_pred             cCCCCCCeEeCCCCcCCcCCCCc
Q 009119          518 KNLTSLTELDLSDNNISALPPEL  540 (543)
Q Consensus       518 ~~~~~L~~L~l~~~~~~~~~~~~  540 (543)
                      ..+++|+.|++++|++...|...
T Consensus       169 ~~l~~L~~L~l~~N~~~~~~~~~  191 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQKCVNEPVKY  191 (263)
T ss_dssp             TTCCCCCEEEEEEEEEECCCEEC
T ss_pred             ccCCCCCEEeCCCCcccCCcccc
Confidence            89999999999999988776543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=1.6e-19  Score=171.69  Aligned_cols=247  Identities=15%  Similarity=0.189  Sum_probs=186.5

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcc--cchh
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAA   86 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~--~~~~   86 (543)
                      +..+.+|++++.+.  |..+ ..+.          .+.++.|+++++.+...+..+..+++|++|++++|.+..  ++..
T Consensus        47 ~~~~~l~l~~~~~~--~~~~-~~~~----------~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~  113 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVT-GRLL----------SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI  113 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHH-HHHH----------HTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             hhheeeccccccCC--HHHH-Hhhh----------hccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence            34788999998876  3222 2210          167999999999988776667789999999999998773  6778


Q ss_pred             hhccCCCCEEEcCCCCCC-CCChhhcccCCccEEecCCC-Ccc--cccccccCCCCCCEEEccCC-cCcc--CCcccccC
Q 009119           87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLK--ELPSSLGRCLNLSDFKASNN-CITS--LPEDLADC  159 (543)
Q Consensus        87 ~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~L~l~~~-~~~~--i~~~~~~~  159 (543)
                      +..+++|++|++++|.+. ..+..+..+++|++|++++| .++  .++..+.++++|++|++++| .++.  ++..+..+
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            889999999999999877 55677888999999999999 677  36667888999999999999 8874  56678888


Q ss_pred             C-CccEEEecCCc--cc-ccchhhhcccccccEEECCCCc-CC-cCchhccCCCcccEEEccCCc-cc-cCCCCCcCCCC
Q 009119          160 S-KMSKLDVEGNK--LT-VLSNNLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCS  231 (543)
Q Consensus       160 ~-~L~~L~l~~~~--i~-~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~  231 (543)
                      + +|++|++++|.  ++ ......+..+++|++|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            9 99999999984  43 2222346778999999999998 43 456678888999999999985 22 11124678999


Q ss_pred             CcEEEcCCCCCCCCCccccCC-CCCCEEeCCCCcccccchh
Q 009119          232 LAEFYMGNNALSALPAELGKL-SKLGTLDLHSNQLKEYCVE  271 (543)
Q Consensus       232 L~~l~l~~~~l~~l~~~l~~~-~~L~~L~l~~n~l~~~~~~  271 (543)
                      |+.|++++| +..-  .+..+ .+++.|+++.|.++.....
T Consensus       274 L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          274 LKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             CCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             CCEEeccCc-cCHH--HHHHHHhhCcceEEecccCccccCC
Confidence            999999998 3321  22222 3366667888888865444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=1.1e-18  Score=174.70  Aligned_cols=180  Identities=26%  Similarity=0.377  Sum_probs=158.6

Q ss_pred             CCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCC
Q 009119           68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN  147 (543)
Q Consensus        68 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  147 (543)
                      .+++.|++++|.+..+|..+.  ++|++|++++|.++.+|   ..+++|++|++++|.++.+|. +..  +|++|++++|
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            389999999999999887553  78999999999999988   568999999999999999987 554  9999999999


Q ss_pred             cCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCCc
Q 009119          148 CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS  227 (543)
Q Consensus       148 ~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  227 (543)
                      .++.+|.   .+++|+.|++++|.+..++.    .+++|++|++++|.+..+|. +.  ++|+.|++++|.++.+|. +.
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~  199 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP  199 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC
T ss_pred             cCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH
Confidence            9999887   68999999999999988765    56899999999999998888 55  899999999999998888 54


Q ss_pred             CCCCC-------cEEEcCCCCCCCCCccccCCCCCCEEeCCCCccccc
Q 009119          228 GCCSL-------AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY  268 (543)
Q Consensus       228 ~~~~L-------~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~  268 (543)
                      .  +|       +.|++++|.++.+|..+..+++|+.|++++|.+...
T Consensus       200 ~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          200 V--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             ----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             H--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence            4  77       999999999999999888899999999999998753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=6.1e-19  Score=154.88  Aligned_cols=175  Identities=26%  Similarity=0.377  Sum_probs=137.5

Q ss_pred             cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCC
Q 009119          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (543)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n  437 (543)
                      -+.+++++++++.+|..+  .+++++|++++|.++.++. .+..+++|++|++++|+++++....|.++++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            356777777777777654  4578888888888888665 3678888888888888888888777788888888888888


Q ss_pred             CCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCcccccccc
Q 009119          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG  516 (543)
Q Consensus       438 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~~  516 (543)
                      .++.++...|..+++|++|++++|.+....+..+..+++|++|++++|.++.++.. +..+++|+.|++++|.+..    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----  162 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----  162 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence            88888777788888888888888888877777778888888888888888877655 5678888888888886552    


Q ss_pred             ccCCCCCCeEeCCCCcCC-cCCCCcC
Q 009119          517 FKNLTSLTELDLSDNNIS-ALPPELV  541 (543)
Q Consensus       517 l~~~~~L~~L~l~~~~~~-~~~~~~~  541 (543)
                        .+++|+.|++++|+++ .+|+.+.
T Consensus       163 --~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          163 --TCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             --CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             --CCCCHHHHHHHHHhCCceeeccCc
Confidence              3567777777777766 5665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=2.6e-19  Score=155.62  Aligned_cols=154  Identities=14%  Similarity=0.267  Sum_probs=134.9

Q ss_pred             hccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEE
Q 009119          377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (543)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  456 (543)
                      ..+++|++|++++|.++++| .+..+++|++|++++|.++...  .+..+++|++|++++|.+++.....+..+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            55788999999999999988 6889999999999999887764  47889999999999999998666679999999999


Q ss_pred             EccCCcCCCCCCCCCCCCCcCceeecCCCc-cccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCc
Q 009119          457 DLSYNIASLPENPPFSSLPHLQELYLRRMQ-LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA  535 (543)
Q Consensus       457 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~  535 (543)
                      ++++|.+....+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+|..
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            999999987666778899999999999997 88886 6888999999999999999987 78899999999999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=2.1e-18  Score=174.61  Aligned_cols=174  Identities=26%  Similarity=0.359  Sum_probs=156.6

Q ss_pred             cccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (543)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~  436 (543)
                      ..++.|+++++.+..++ .+..+++|+.|++++|.++.++. +..+++|+.|++++|.++++.  .+..+++|+.|+|++
T Consensus        43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTT
T ss_pred             CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecC
Confidence            57899999999999886 57889999999999999999876 889999999999999999876  478999999999999


Q ss_pred             CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccccccc
Q 009119          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG  516 (543)
Q Consensus       437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~  516 (543)
                      |.+.+++  .+..+++|+.|++++|.+...  ..+..+++|++|+|++|.++.++. +..+++|+.|+|++|.++.++ .
T Consensus       119 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~  192 (605)
T 1m9s_A          119 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-A  192 (605)
T ss_dssp             SCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-G
T ss_pred             CCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-H
Confidence            9999864  488999999999999999886  568899999999999999998766 888999999999999999985 5


Q ss_pred             ccCCCCCCeEeCCCCcCCcCCCCc
Q 009119          517 FKNLTSLTELDLSDNNISALPPEL  540 (543)
Q Consensus       517 l~~~~~L~~L~l~~~~~~~~~~~~  540 (543)
                      +..+++|+.|+|++|++...|...
T Consensus       193 l~~l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             GTTCTTCSEEECCSEEEECCCCCC
T ss_pred             HccCCCCCEEEccCCcCcCCcccc
Confidence            899999999999999988766543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=2.1e-18  Score=152.34  Aligned_cols=151  Identities=26%  Similarity=0.395  Sum_probs=120.1

Q ss_pred             cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCC
Q 009119          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (543)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n  437 (543)
                      -+.+++++++++.+|..+.  ++++.|++++|.++.++. .+..+++|+.|++++|.++.+.+..|.++++|++|+|++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3677888888888776553  678888888888887654 5777888888888888888877777888888888888888


Q ss_pred             CCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       438 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~  511 (543)
                      +++.++...|..+++|++|++++|.+....+..|..+++|++|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            88888777778888888888888888887777788888888888888888877654 666788888888888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=9.3e-19  Score=167.46  Aligned_cols=175  Identities=28%  Similarity=0.440  Sum_probs=155.2

Q ss_pred             ccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChh-hc-cCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcC
Q 009119          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LS-SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (543)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~-~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~  435 (543)
                      .-+.+++++++++.+|..+  .+.++.|++++|.++.++.. +. .+++|+.|++++|+++.+....|.++++|++|+|+
T Consensus        19 ~~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           19 ASNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             ETTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            3468999999999998765  35689999999999997654 55 89999999999999999998889999999999999


Q ss_pred             CCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhh----hccCCCcEEeCCCCccc
Q 009119          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI----LRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       436 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~----~~~~~L~~L~l~~~~l~  511 (543)
                      +|+++.++...|..+++|++|++++|.+....+..|..+++|++|++++|.++.+|...    ..+++|+.|+|++|+++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            99999998888999999999999999999888888999999999999999999988765    46899999999999999


Q ss_pred             ccc-ccccCCCC--CCeEeCCCCcCC
Q 009119          512 SIP-EGFKNLTS--LTELDLSDNNIS  534 (543)
Q Consensus       512 ~l~-~~l~~~~~--L~~L~l~~~~~~  534 (543)
                      .+| ..+..++.  |+.|++++|++.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCHHHhhhccHhhcceEEecCCCcc
Confidence            986 56777877  489999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=2.4e-18  Score=152.01  Aligned_cols=151  Identities=25%  Similarity=0.310  Sum_probs=117.5

Q ss_pred             cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCC--hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (543)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~  436 (543)
                      -+.++++++.++.+|..+  .+.+++|++++|.++.++  ..+..+++|+.|++++|.++++....|.++++|++|++++
T Consensus        13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            457888888888777655  345678888888887763  2367788888888888888887777778888888888888


Q ss_pred             CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCccc
Q 009119          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~  511 (543)
                      |.++.++...|..+++|++|++++|.+....+..|..+++|++|++++|+++.+ |..+..+++|+.|++++|.+.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            888877777788888888888888888877777778888888888888888866 566777888888888888766

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=6.8e-18  Score=160.81  Aligned_cols=211  Identities=18%  Similarity=0.233  Sum_probs=156.7

Q ss_pred             cEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCC-CCC-hhhcccCCccE-EecCC
Q 009119           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM-KIP-DEIGSATALVK-FDCSS  123 (543)
Q Consensus        48 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~-~l~-~~~~~~~~L~~-L~l~~  123 (543)
                      +.++.+++.++++|..+.  +++++|+|++|.++.+|. +|.++++|++|+|++|.+. .++ .+|.++++++. +.+.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            678999999999997663  689999999999999976 7899999999999999975 454 35788888776 55667


Q ss_pred             CCccccc-ccccCCCCCCEEEccCCcCccCCc-ccccCCCccEEEecC-Ccccccchhhhcccc-cccEEECCCCcCCcC
Q 009119          124 NQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEG-NKLTVLSNNLIASWT-MLTELIASKNLLNGM  199 (543)
Q Consensus       124 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~-~~i~~~~~~~~~~~~-~L~~L~l~~~~~~~~  199 (543)
                      |+++.++ ..+..+++|++|++++|.+..++. .+....++..+++.+ +.+..+....|..+. .++.|++++|.++.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            8888774 668889999999999999887754 355667788888865 567777766666654 477778888877777


Q ss_pred             chhccCCCcccEEEccC-CccccCCC-CCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCC
Q 009119          200 PETIGSLSRLIRLDLHQ-NRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS  262 (543)
Q Consensus       200 ~~~l~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~  262 (543)
                      +.......+|+.+++.+ +.+..+|. .|..+++|++|++++|.++.+|..  .+.+|+.|.+.+
T Consensus       170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~  232 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARS  232 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTT
T ss_pred             ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhcc
Confidence            76665666777777764 56666664 456677777777777777766552  244555555433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=2.3e-17  Score=144.82  Aligned_cols=155  Identities=33%  Similarity=0.426  Sum_probs=138.6

Q ss_pred             ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCC
Q 009119          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (543)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  461 (543)
                      -+.++.+++.++.+|..+  .++|++|++++|.++++....+.++++|++|++++|+++.++...|..+++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            467889999999988654  468999999999999998888899999999999999999998888899999999999999


Q ss_pred             cCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccccccc-cccCCCCCCeEeCCCCcCCcCCC
Q 009119          462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPP  538 (543)
Q Consensus       462 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~  538 (543)
                      .+.......+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|+.|++++|++..-.+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            99988777789999999999999999988765 6789999999999999998864 47899999999999999875433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=6.9e-18  Score=149.03  Aligned_cols=151  Identities=25%  Similarity=0.355  Sum_probs=134.1

Q ss_pred             ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCC
Q 009119          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (543)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  461 (543)
                      -+.++++++.++.+|..+.  ++++.|++++|.++.+....|..+++|+.|+|++|++..+...+|..+++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3678999999999987554  68999999999999988888899999999999999999988888999999999999999


Q ss_pred             cCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCcccccc-ccccCCCCCCeEeCCCCcCC
Q 009119          462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNIS  534 (543)
Q Consensus       462 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~~~  534 (543)
                      .+..+....|..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|++.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            99988777789999999999999999977 456788999999999999999885 45888999999999999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.1e-17  Score=169.39  Aligned_cols=172  Identities=23%  Similarity=0.348  Sum_probs=130.0

Q ss_pred             ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (543)
                      +++|+.|++++|.+..++ .++.+++|+.|+|++|.+..++. +..+++|+.|+|++|.+..++ .+..+++|+.|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence            566888888888877775 47778888888888888777755 777888888888888777765 577788888888888


Q ss_pred             CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc
Q 009119          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (543)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (543)
                      |.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+..  +..+++|+.|++++|.+..++ .+
T Consensus       119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l  193 (605)
T 1m9s_A          119 NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL  193 (605)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred             CCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence            8877763 567777888888888877776 567777888888888887776655  677777888888887777764 46


Q ss_pred             cCCCcccEEEccCCccccCC
Q 009119          204 GSLSRLIRLDLHQNRILSIP  223 (543)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~  223 (543)
                      ..+++|+.|++++|.+...|
T Consensus       194 ~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          194 AGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             TTCTTCSEEECCSEEEECCC
T ss_pred             ccCCCCCEEEccCCcCcCCc
Confidence            67777888888777776544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=7.1e-18  Score=153.34  Aligned_cols=168  Identities=20%  Similarity=0.263  Sum_probs=88.8

Q ss_pred             ccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCc
Q 009119           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL  126 (543)
Q Consensus        47 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~  126 (543)
                      ++.++++++.+.+++ .+..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+
T Consensus        21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred             HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc
Confidence            444445555444443 3444555555555555555444 44455555555555555554444 44555555555555555


Q ss_pred             ccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCC
Q 009119          127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL  206 (543)
Q Consensus       127 ~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~  206 (543)
                      +.++....  ++|++|++++|.+..++ .+..+++|+.|++++|.+..+.  .+..+++|++|++++|.+..+ ..+..+
T Consensus        98 ~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~l  171 (263)
T 1xeu_A           98 KNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTRL  171 (263)
T ss_dssp             SCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTTC
T ss_pred             CCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhccC
Confidence            54432222  55555555555555543 3555555555555555555543  255556666666666666555 445566


Q ss_pred             CcccEEEccCCccccCC
Q 009119          207 SRLIRLDLHQNRILSIP  223 (543)
Q Consensus       207 ~~L~~L~l~~~~~~~~~  223 (543)
                      ++|+.|++++|.+...|
T Consensus       172 ~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          172 KKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CCCCEEEEEEEEEECCC
T ss_pred             CCCCEEeCCCCcccCCc
Confidence            66666666666665443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.2e-17  Score=147.47  Aligned_cols=151  Identities=23%  Similarity=0.367  Sum_probs=133.9

Q ss_pred             ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCC-HHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (543)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  460 (543)
                      -+.++++++.++.+|..+.  +.++.|++++|.++.+. ...|.++++|++|++++|.++.+...+|..+++|++|++++
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4689999999999987553  46789999999999874 35578999999999999999999888899999999999999


Q ss_pred             CcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCccccc-cccccCCCCCCeEeCCCCcCC
Q 009119          461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS  534 (543)
Q Consensus       461 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~  534 (543)
                      |.+....+..|..+++|++|++++|+++.+ +..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|++.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            999988888889999999999999999977 56688899999999999999988 788999999999999999876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.73  E-value=1.4e-16  Score=154.31  Aligned_cols=200  Identities=11%  Similarity=0.161  Sum_probs=103.5

Q ss_pred             cccch-HHhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCccccc-cc
Q 009119           57 IEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SS  132 (543)
Q Consensus        57 ~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~  132 (543)
                      ++.|. .+|.+|.+|+.+.+..+ +..|.+ +|.+|.+|+.+++..+ +..+ ..+|.++++|+.+.+..+ +..+. ..
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            33443 35666666666666532 444433 5666666666666533 3332 234555666665555432 22222 23


Q ss_pred             ccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCc-hhccCCCcccE
Q 009119          133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIR  211 (543)
Q Consensus       133 ~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~  211 (543)
                      |..+. +....+.......-..+|..|.+|+.+.+.++ +..+...+|.++.+|+.+.+..+ +..+. .++.++..|+.
T Consensus       136 F~~~~-~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          136 FKGCD-FKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TTTCC-CSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             eeccc-ccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence            33332 22222222111111235666677777777543 45566666777777777776655 33332 34566677777


Q ss_pred             EEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCC
Q 009119          212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (543)
Q Consensus       212 L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n  263 (543)
                      +.+..+... +......+..|+.+.+......--...+..+.+++.+.+..+
T Consensus       213 i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          213 MEFPNSLYY-LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             CCCCTTCCE-ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT
T ss_pred             eecCCCceE-eehhhcccCCCceEEECCCceecccccccccccceeEEcCCC
Confidence            766654322 223344566777777754322212235666777777776554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.5e-17  Score=159.13  Aligned_cols=156  Identities=29%  Similarity=0.373  Sum_probs=139.7

Q ss_pred             ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhh-CCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (543)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  460 (543)
                      -+.++++++.++.+|..+.  +.++.|++++|.++++....+. ++++|+.|+|++|++..+...+|..+++|++|++++
T Consensus        20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            3689999999999997543  5699999999999998888787 999999999999999999988899999999999999


Q ss_pred             CcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCccccccccc----cCCCCCCeEeCCCCcCCc
Q 009119          461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGF----KNLTSLTELDLSDNNISA  535 (543)
Q Consensus       461 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~l~~~l----~~~~~L~~L~l~~~~~~~  535 (543)
                      |.+.......|..+++|++|++++|.++.+ +..+..+++|+.|+|++|.++.+|..+    ..+++|+.|+|++|+|+.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            999988888899999999999999999976 566888999999999999999997553    679999999999999999


Q ss_pred             CCCC
Q 009119          536 LPPE  539 (543)
Q Consensus       536 ~~~~  539 (543)
                      +|..
T Consensus       178 l~~~  181 (361)
T 2xot_A          178 LPLT  181 (361)
T ss_dssp             CCHH
T ss_pred             cCHH
Confidence            8853

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.73  E-value=2e-16  Score=153.23  Aligned_cols=64  Identities=9%  Similarity=0.160  Sum_probs=37.9

Q ss_pred             cccch-hhhccCCCCEEEcCCCCCCCC-ChhhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccC
Q 009119           81 SELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASN  146 (543)
Q Consensus        81 ~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~  146 (543)
                      ++|.. +|.+|.+|+.+.+..+ ++.+ ..+|.+|++|+.+++..+ ++.++ ..|.++.+|+.+.+..
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~  126 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL  126 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence            34533 7777777777777643 5544 345777777777777543 44443 3455566666655543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=6.6e-17  Score=143.80  Aligned_cols=153  Identities=26%  Similarity=0.340  Sum_probs=137.9

Q ss_pred             cccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccC-ChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcC
Q 009119          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (543)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~  435 (543)
                      ++...+++++++++.+|..+  .++|++|++++|.++.+ |..+..+++|+.|++++|.++.+....|.++++|+.|+|+
T Consensus        19 Cs~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             EETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EeCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            56678999999999998766  38999999999999996 6678899999999999999999998889999999999999


Q ss_pred             CCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCch-hhhccCCCcEEeCCCCcccc
Q 009119          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQS  512 (543)
Q Consensus       436 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~  512 (543)
                      +|+++.++...|..+++|++|++++|.+..+ +..+..+++|++|++++|+++.++. .+..+++|+.|++++|.+..
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            9999999888899999999999999999854 5667899999999999999998875 47789999999999998873

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.4e-17  Score=144.65  Aligned_cols=151  Identities=19%  Similarity=0.248  Sum_probs=132.3

Q ss_pred             cccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (543)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~  436 (543)
                      +.++.++++++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            67899999999999888 6888999999999999887776 688899999999999999986666688999999999999


Q ss_pred             CCCcccCCCccCCCCCccEEEccCCc-CCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccc
Q 009119          437 NPLRQVPSDGFKDIPMLQILDLSYNI-ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS  512 (543)
Q Consensus       437 n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~  512 (543)
                      |.+++.....+..+++|++|++++|. +....  .+..+++|++|++++|.++.++ .+..+++|+.|++++|++..
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            99998666678999999999999998 66653  5889999999999999999887 78889999999999998764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.5e-16  Score=150.23  Aligned_cols=101  Identities=17%  Similarity=0.152  Sum_probs=59.0

Q ss_pred             CCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCcc-EEEccCCcCCCCCCCCCCCCCcCcee
Q 009119          402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQEL  480 (543)
Q Consensus       402 ~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L  480 (543)
                      |++|+.+++++|+++.++..+|.+|++|+.+++.+| +..++..+|.+|++|+ .+++.+ .+..+...+|.+|++|+++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            555666666655566555555666666666666555 5555555666666665 666655 4555555556666666666


Q ss_pred             ecCCCccccCch-hhhccCCCcEEe
Q 009119          481 YLRRMQLREAPT-DILRLQQLRILD  504 (543)
Q Consensus       481 ~l~~~~l~~l~~-~~~~~~~L~~L~  504 (543)
                      +++++.++.++. .|.+|++|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            666666665543 344556666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=8.9e-19  Score=176.38  Aligned_cols=200  Identities=19%  Similarity=0.181  Sum_probs=103.4

Q ss_pred             ccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCc-------------Cc-ccchhhhccCCCCEEE-cCCCCCCCC
Q 009119           42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-------------LS-ELPAAIGELHMLKSLD-VSFNSIMKI  106 (543)
Q Consensus        42 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-------------l~-~~~~~~~~~~~L~~L~-l~~~~~~~l  106 (543)
                      +.+++|+.|+|++|.++.+|..++++++|+.|++++|.             .. .+|..++.+++|+.|+ ++.+.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            44666666666666666666666666666666665542             11 2233444444555444 333322211


Q ss_pred             ChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccc
Q 009119          107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML  186 (543)
Q Consensus       107 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L  186 (543)
                      +.          +.+++|.+..++.     ..|++|++++|.++.+|. +..+++|+.|++++|.+..++. .+..+++|
T Consensus       426 ~~----------l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L  488 (567)
T 1dce_A          426 RS----------KFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCL  488 (567)
T ss_dssp             HH----------HHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTC
T ss_pred             hh----------hhhhcccccccCc-----cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCC
Confidence            10          0111111111111     135555555555555543 5555555555555555554443 25555555


Q ss_pred             cEEECCCCcCCcCchhccCCCcccEEEccCCccccC--CCCCcCCCCCcEEEcCCCCCCCCCcc----ccCCCCCCEEe
Q 009119          187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLD  259 (543)
Q Consensus       187 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~l~~l~~~----l~~~~~L~~L~  259 (543)
                      +.|++++|.++.+| .+..+++|+.|++++|.+..+  |..+..+++|+.|++++|.++..|..    +..+++|+.|+
T Consensus       489 ~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          489 EVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            55555555555555 555566666666666666655  55556666666666666666544332    23356676665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=4.8e-17  Score=137.42  Aligned_cols=134  Identities=27%  Similarity=0.313  Sum_probs=84.9

Q ss_pred             CCCceeecccCcCC--CCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCcee
Q 009119          403 ASLQTLILSRNKIK--DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQEL  480 (543)
Q Consensus       403 ~~L~~L~l~~~~i~--~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  480 (543)
                      ++|+.|++++|.++  .++ ..+..+++|+.|++++|.++.+  ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            34444444444444  222 2234445555555555555544  335556666666666666655444444557777777


Q ss_pred             ecCCCccccCc--hhhhccCCCcEEeCCCCccccccc----cccCCCCCCeEeCCCCcCCcCCCC
Q 009119          481 YLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIPE----GFKNLTSLTELDLSDNNISALPPE  539 (543)
Q Consensus       481 ~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~l~~----~l~~~~~L~~L~l~~~~~~~~~~~  539 (543)
                      ++++|.++.++  ..+..+++|+.|++++|.++.+|.    .+..+++|+.|++++|++.++|+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            77777777665  566777888888888888887765    677888888888888888877765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=1.4e-16  Score=150.49  Aligned_cols=124  Identities=15%  Similarity=0.159  Sum_probs=103.7

Q ss_pred             CCCCceeecccCcCCCCCHHHh-hCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCc-e
Q 009119          402 CASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ-E  479 (543)
Q Consensus       402 ~~~L~~L~l~~~~i~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~  479 (543)
                      ..+++.+.+.++ +.......+ ..+++|+.+++++|+++.++..+|.+|++|+++++.+| +..+...+|..+++|+ +
T Consensus       201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence            456677777654 222222222 34899999999999999999999999999999999998 8888888999999999 9


Q ss_pred             eecCCCccccCc-hhhhccCCCcEEeCCCCcccccc-ccccCCCCCCeEeC
Q 009119          480 LYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDL  528 (543)
Q Consensus       480 L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l  528 (543)
                      +.+.+ .++.++ ..|..|++|+.+++++|.++.++ ..|..|++|+.++.
T Consensus       279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            99999 888775 56788999999999999999995 57999999999863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=4.7e-18  Score=171.09  Aligned_cols=178  Identities=19%  Similarity=0.205  Sum_probs=121.2

Q ss_pred             HhhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccc--------------cccchHHhcCCCCCCEE
Q 009119            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN--------------IEKLKEDLRNLPLLTVL   73 (543)
Q Consensus         8 ~~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------~~~l~~~~~~~~~L~~L   73 (543)
                      ...++.|+++++.++.+|..+..             +++|+.|+++++.              ...+|..++.+++|+.|
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~-------------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L  414 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELES-------------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  414 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             CccceeccCChhhHHhhHHHHHH-------------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccC
Confidence            45678899999999999988865             6789999987763              22445678888889888


Q ss_pred             E-cCCCcCcccch------hhhc--cCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEc
Q 009119           74 N-VSHNKLSELPA------AIGE--LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA  144 (543)
Q Consensus        74 ~-l~~~~l~~~~~------~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  144 (543)
                      + ++.+.+..++.      .+..  ...|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..+..+++|++|++
T Consensus       415 ~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L  493 (567)
T 1dce_A          415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA  493 (567)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred             cchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence            8 66655443322      1111  1257777777777777765 77777777777777777777777777777777777


Q ss_pred             cCCcCccCCcccccCCCccEEEecCCcccccc-hhhhcccccccEEECCCCcCCcCc
Q 009119          145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMP  200 (543)
Q Consensus       145 ~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~  200 (543)
                      ++|.++.+| .+..+++|+.|++++|.+..+. ...+..+++|+.|++++|.+...|
T Consensus       494 s~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          494 SDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             CSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            777777665 6666666666666666666553 334555566666666666555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=1.2e-14  Score=139.80  Aligned_cols=127  Identities=11%  Similarity=0.183  Sum_probs=74.8

Q ss_pred             CccEEEcCCCcCccC-ChhhccCCCCceeecccCcCC-----CCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCcc
Q 009119          381 EITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIK-----DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ  454 (543)
Q Consensus       381 ~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~i~-----~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  454 (543)
                      +|+.+.+. +.++.+ ..+|..|++|+.+++.++.+.     .+...+|.+|++|+.+.+. +.+..++..+|.+|++|+
T Consensus       249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred             CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence            45555552 234443 234566666666666655443     4555666677777777776 346666666677777777


Q ss_pred             EEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhcc-CCCcEEeCCCCccc
Q 009119          455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRL-QQLRILDLSQNSLQ  511 (543)
Q Consensus       455 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~-~~L~~L~l~~~~l~  511 (543)
                      .+.+..+ +..+...+|..+ +|+++.+.+|.+..++.. +.++ ..++.|.+..+.+.
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            7777543 555555666666 677777777666654433 3344 35666666665443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=3e-16  Score=132.51  Aligned_cols=135  Identities=21%  Similarity=0.169  Sum_probs=104.6

Q ss_pred             CCccEEEcCCCcCc--cCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEE
Q 009119          380 GEITKLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (543)
Q Consensus       380 ~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  457 (543)
                      ++|++|++++|.++  .+|..+..+++|+.|++++|.++++  ..+..+++|++|++++|++.+.....+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            56788888888877  6777777788888888888887776  4567788888888888888774444456678888888


Q ss_pred             ccCCcCCCCCC-CCCCCCCcCceeecCCCccccCch----hhhccCCCcEEeCCCCcccccccc
Q 009119          458 LSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPT----DILRLQQLRILDLSQNSLQSIPEG  516 (543)
Q Consensus       458 l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~l~~----~~~~~~~L~~L~l~~~~l~~l~~~  516 (543)
                      +++|.+..... ..+..+++|++|++++|.++.++.    .+..+++|++|++++|.+..+|..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            88888776532 567788888888888888887775    677788999999999888877653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=9.1e-15  Score=140.66  Aligned_cols=259  Identities=11%  Similarity=0.143  Sum_probs=165.4

Q ss_pred             CCCCCcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcc-eecEEEccCCCCCCC-ChhhcCCCCCceee
Q 009119          228 GCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGL-PPEIGKMTTLRKLL  304 (543)
Q Consensus       228 ~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~  304 (543)
                      .+..++.+.+.+. ++.++ .+|.++ +|+.+.+..+ ++.+....|.. .|+.+.+.+ .+..+ ..+|.+|++|+.++
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            3577788887653 44443 356664 7999998776 66666655543 488888876 55554 34588888899999


Q ss_pred             cCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChh-hhccCCcc
Q 009119          305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEIT  383 (543)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~  383 (543)
                      +.++.+..++...|..                                    .+++.+.+.++ +..+... +..|++|+
T Consensus       187 l~~n~l~~I~~~aF~~------------------------------------~~L~~l~lp~~-l~~I~~~aF~~~~~L~  229 (401)
T 4fdw_A          187 LSKTKITKLPASTFVY------------------------------------AGIEEVLLPVT-LKEIGSQAFLKTSQLK  229 (401)
T ss_dssp             CTTSCCSEECTTTTTT------------------------------------CCCSEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             cCCCcceEechhhEee------------------------------------cccCEEEeCCc-hheehhhHhhCCCCCC
Confidence            8888887776655542                                    34566666533 4444433 34566777


Q ss_pred             EEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCc-----ccCCCccCCCCCccEEE
Q 009119          384 KLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR-----QVPSDGFKDIPMLQILD  457 (543)
Q Consensus       384 ~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~  457 (543)
                      .+++.++ ++.++. +|.. .+|+.+.+ .+.++.+...+|.+|++|+.+++.++.+.     .++..+|.+|++|+.++
T Consensus       230 ~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~  306 (401)
T 4fdw_A          230 TIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFE  306 (401)
T ss_dssp             CEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEEC
T ss_pred             EEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEE
Confidence            7777653 444433 3444 56777777 44566666667777777777777666554     46666777777777777


Q ss_pred             ccCCcCCCCCCCCCCCCCcCceeecCCCccccCch-hhhccCCCcEEeCCCCcccccc-ccccCCC-CCCeEeCCCCcC
Q 009119          458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLT-SLTELDLSDNNI  533 (543)
Q Consensus       458 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~-~L~~L~l~~~~~  533 (543)
                      +.+ .+..+...+|.+|++|+.+.+..+ ++.++. .|..| +|+.+++++|.+..++ ..|..++ .++.|++-.+.+
T Consensus       307 l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          307 IPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             eCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            773 366666667777777777777543 554433 35556 7777777777666553 4455553 566676655543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.63  E-value=3.8e-14  Score=137.19  Aligned_cols=131  Identities=14%  Similarity=0.248  Sum_probs=90.5

Q ss_pred             hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCc
Q 009119          397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH  476 (543)
Q Consensus       397 ~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  476 (543)
                      .+|..|..|+.+.+.++ +..+....|.++++|+.+.+. +.++.++..+|.+|.+|+.+++..+ +..+...+|.+|.+
T Consensus       259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            35778888888888643 445666778888888888886 5677788888888888888888754 66666778888888


Q ss_pred             CceeecCCCccccCch-hhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcC
Q 009119          477 LQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI  533 (543)
Q Consensus       477 L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~  533 (543)
                      |+++.+..+ ++.++. +|.+|++|+.+++.++....  ..+..+.+|+.+.+..+.+
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence            988888654 666643 46778889999888865321  3567788888888766543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=4.2e-15  Score=127.99  Aligned_cols=127  Identities=27%  Similarity=0.378  Sum_probs=89.1

Q ss_pred             ceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCC
Q 009119          360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL  439 (543)
Q Consensus       360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l  439 (543)
                      +.+++++++++.+|..+  .+++++|++++|.++.+|..+..+++|+.|++++|.++.+....|.++++|++|+|++|++
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            56677777777776544  2567777777777777776677777777777777777777666677777777777777777


Q ss_pred             cccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119          440 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (543)
Q Consensus       440 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  488 (543)
                      +.++..+|..+++|++|++++|.+.......|..+++|+.|++++|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7766666777777777777777776665556666777777777776654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.62  E-value=5.1e-14  Score=136.36  Aligned_cols=127  Identities=15%  Similarity=0.270  Sum_probs=79.3

Q ss_pred             ccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEE
Q 009119          378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (543)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  457 (543)
                      .|..|+.+.+.+....--..+|..|+.|+.+.+. +.++.+...+|.+|.+|+.+.+..+ ++.++..+|.+|.+|+.+.
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            3555666666543322223356677777777774 4566677777788888888888643 6777777788888888888


Q ss_pred             ccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCc
Q 009119          458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS  509 (543)
Q Consensus       458 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~  509 (543)
                      +..+ +..+...+|.+|++|+++++.++....  ..+..+..|+.+.+..+.
T Consensus       341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          341 IPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             ECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred             ECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence            8643 666666778888888888887764331  345567777777776554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=5.6e-16  Score=127.93  Aligned_cols=126  Identities=23%  Similarity=0.290  Sum_probs=80.0

Q ss_pred             CCCceeecccCcCC-CCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceee
Q 009119          403 ASLQTLILSRNKIK-DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY  481 (543)
Q Consensus       403 ~~L~~L~l~~~~i~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  481 (543)
                      ++++.|++++|.++ +..+..+..+++|+.|++++|.++++  ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555555 12222345556666666666665555  3456666666666666666654444455577777777


Q ss_pred             cCCCccccCc--hhhhccCCCcEEeCCCCccccccc----cccCCCCCCeEeCCC
Q 009119          482 LRRMQLREAP--TDILRLQQLRILDLSQNSLQSIPE----GFKNLTSLTELDLSD  530 (543)
Q Consensus       482 l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~l~~----~l~~~~~L~~L~l~~  530 (543)
                      +++|.++.++  ..+..+++|++|++++|.++.++.    .+..+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            7777777654  567777888888888888777654    577788888887753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.62  E-value=4.7e-16  Score=132.24  Aligned_cols=129  Identities=21%  Similarity=0.251  Sum_probs=64.3

Q ss_pred             cCCCCceeecccCcCCCCCHHHhhCC-CCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCce
Q 009119          401 SCASLQTLILSRNKIKDWPDAILTSL-SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE  479 (543)
Q Consensus       401 ~~~~L~~L~l~~~~i~~~~~~~l~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  479 (543)
                      .+++|+.|++++|.++++..  +..+ ++|++|++++|.++++  ..+..+++|++|++++|.+....+..+..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            34444555555554444321  2222 2555555555555444  23455555555555555554433222345555555


Q ss_pred             eecCCCccccCch--hhhccCCCcEEeCCCCcccccccc----ccCCCCCCeEeCCCCcC
Q 009119          480 LYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSIPEG----FKNLTSLTELDLSDNNI  533 (543)
Q Consensus       480 L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~l~~~----l~~~~~L~~L~l~~~~~  533 (543)
                      |++++|.++.++.  .+..+++|+.|++++|.+..+|..    +..+++|+.|++++|++
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            5555555555544  445555555555555555555442    55555555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=7.5e-15  Score=126.41  Aligned_cols=127  Identities=24%  Similarity=0.329  Sum_probs=115.4

Q ss_pred             ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCC
Q 009119          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (543)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  461 (543)
                      -+.++++++.++.+|..+.  ++|+.|++++|.++.++ ..|.++++|+.|++++|.++.+....|..+++|++|++++|
T Consensus        12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            3678999999999997543  68999999999999887 67899999999999999999999888999999999999999


Q ss_pred             cCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119          462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       462 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~  511 (543)
                      .+....+.+|..+++|++|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            99998888899999999999999999988775 677999999999999876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.9e-15  Score=124.75  Aligned_cols=124  Identities=23%  Similarity=0.286  Sum_probs=85.8

Q ss_pred             ccCccEEEcCccccc--cchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCC-CChhhcccCCccEEe
Q 009119           44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFD  120 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~  120 (543)
                      .+++++|++++|.+.  .+|..+..+++|+.|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            356777777777776  6666677777777777777777766 566777777777777777775 565666677777777


Q ss_pred             cCCCCccccc--ccccCCCCCCEEEccCCcCccCCc----ccccCCCccEEEec
Q 009119          121 CSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDVE  168 (543)
Q Consensus       121 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i~~----~~~~~~~L~~L~l~  168 (543)
                      +++|.++.++  ..+..+++|++|++++|.+..++.    .+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777777654  556666677777777766665543    45556666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=5.5e-15  Score=127.38  Aligned_cols=128  Identities=23%  Similarity=0.286  Sum_probs=108.7

Q ss_pred             cceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCCh--hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (543)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~  436 (543)
                      -+.+++++++++.+|..+.  .++++|++++|.++.++.  .+..+++|++|++++|.++++.+..|.++++|++|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            4678888888888887654  388999999998888765  378888999999999999888877888899999999999


Q ss_pred             CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (543)
Q Consensus       437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  488 (543)
                      |+++.+....|..+++|++|++++|.++...+..+..+++|++|++++|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            9998888877888899999999999888877778888889999999988877

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=5.5e-15  Score=127.36  Aligned_cols=128  Identities=24%  Similarity=0.352  Sum_probs=113.1

Q ss_pred             ccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHH-HhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (543)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~-~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  460 (543)
                      .+.++++++.++.+|..+.  ++++.|++++|.++.+... .+..+++|++|++++|.++++...+|..+++|++|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            3789999999999987554  3899999999999987764 578999999999999999998888899999999999999


Q ss_pred             CcCCCCCCCCCCCCCcCceeecCCCccccC-chhhhccCCCcEEeCCCCccc
Q 009119          461 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       461 n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~  511 (543)
                      |.+....+..|..+++|++|++++|+++.+ |..+..+++|++|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999988888889999999999999999965 667888999999999999876

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=1.3e-15  Score=129.50  Aligned_cols=135  Identities=22%  Similarity=0.212  Sum_probs=103.7

Q ss_pred             CccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChh-hcccCCcc
Q 009119           39 DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALV  117 (543)
Q Consensus        39 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~  117 (543)
                      ..|.++++|++|++++|.+..++......++|+.|++++|.+..+ ..+..+++|++|++++|.+..++.. +..+++|+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            345667888889999888887755444445888888888888877 5778888888888888888877654 47888888


Q ss_pred             EEecCCCCcccccc--cccCCCCCCEEEccCCcCccCCcc----cccCCCccEEEecCCcccc
Q 009119          118 KFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLTV  174 (543)
Q Consensus       118 ~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~i~~~----~~~~~~L~~L~l~~~~i~~  174 (543)
                      +|++++|.+..+|.  .+..+++|++|++++|.+..++..    +..+++|+.|+++++...+
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            88888888887775  677788888888888888777664    6777777777777766543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=2.2e-14  Score=122.01  Aligned_cols=127  Identities=28%  Similarity=0.411  Sum_probs=65.6

Q ss_pred             cEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCc
Q 009119          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (543)
Q Consensus       383 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  462 (543)
                      +.++++++.++.+|..+  .++|+.|++++|+++++....+.++++|++|++++|.++.++...|..+++|++|++++|.
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            44455555555544322  2455555555555555554444555555555555555555554445555555555555555


Q ss_pred             CCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119          463 ASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       463 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~  511 (543)
                      ++...+..+..+++|++|++++|.++.++.. +..+++|++|++++|.+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            5544444445555555555555555554443 234555555555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=1.2e-15  Score=158.63  Aligned_cols=196  Identities=19%  Similarity=0.232  Sum_probs=110.4

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhh
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~   88 (543)
                      +.++.+++.++++..+|..+...++-        .--.+..++++.+.+...+..|..++.|+.|+|++|.+..+|..+.
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~L--------s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKL--------SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF  244 (727)
T ss_dssp             ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred             CccceEEeeCCCCCcchhhHhhcCcc--------CcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence            34677888888888877666543110        0012233334444444455778889999999999999888888777


Q ss_pred             ccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEec
Q 009119           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (543)
Q Consensus        89 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~  168 (543)
                      .+++|++|+|++|.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+|..+..+++|+.|+++
T Consensus       245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred             CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence            89999999999999888888888999999999999999988888889999999999999998888888899999999999


Q ss_pred             CCcccccchhhhccccc-ccEEECCCCcCCcCchhccCCCcccEEEccCC
Q 009119          169 GNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLSRLIRLDLHQN  217 (543)
Q Consensus       169 ~~~i~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  217 (543)
                      +|.+.......+..... ...+++.+|.+....     ...|+.|+++.+
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-----p~~l~~l~l~~n  369 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-----PHERRFIEINTD  369 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCC---------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCcC-----ccccceeEeecc
Confidence            99888655444443321 223556666653211     234556666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=6.7e-14  Score=119.04  Aligned_cols=130  Identities=31%  Similarity=0.421  Sum_probs=115.4

Q ss_pred             CCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecC
Q 009119          404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR  483 (543)
Q Consensus       404 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  483 (543)
                      ..+.++++++.++.++..   ..++|++|++++|++++++...|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus         8 ~~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            357899999999988743   34799999999999999888888999999999999999998877778999999999999


Q ss_pred             CCccccCchh-hhccCCCcEEeCCCCcccccccc-ccCCCCCCeEeCCCCcCCcC
Q 009119          484 RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISAL  536 (543)
Q Consensus       484 ~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~~  536 (543)
                      +|.++.++.. +..+++|++|++++|.++.+|.. +..+++|+.|++++|++...
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            9999988765 57899999999999999998654 68899999999999998753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=1.4e-14  Score=150.64  Aligned_cols=180  Identities=20%  Similarity=0.197  Sum_probs=81.5

Q ss_pred             cccceeeeCCCCCCCCChhhhccCCccEE-----EcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCE
Q 009119          357 VTSKELSLEGMNLSAIPSEIWEAGEITKL-----DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC  431 (543)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L-----~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~  431 (543)
                      +.++.+.+.++.+...+..+.....|..+     ++..+.+...+..+..++.|+.|+|++|.+..+.... ..+++|++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~  251 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTR  251 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GGCCSCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCE
Confidence            44566666666655544433222222222     2222233333445666666777777777666555443 36666777


Q ss_pred             EEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccc
Q 009119          432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       432 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~  511 (543)
                      |+|++|.++.++ ..|..+++|++|+|++|.++. .+..+..+++|++|+|++|.++.+|..+..+++|+.|+|++|.++
T Consensus       252 L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          252 LYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             EEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence            777777666554 335666666677776666663 355566666666666666666666666666666666666666666


Q ss_pred             cc-cccccCCC-CCCeEeCCCCcCC-cCCCC
Q 009119          512 SI-PEGFKNLT-SLTELDLSDNNIS-ALPPE  539 (543)
Q Consensus       512 ~l-~~~l~~~~-~L~~L~l~~~~~~-~~~~~  539 (543)
                      .. |..+..+. .+..+++++|.++ .+|++
T Consensus       330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             CCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            43 43332221 1123556666555 34443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=2.9e-15  Score=130.07  Aligned_cols=127  Identities=29%  Similarity=0.328  Sum_probs=89.6

Q ss_pred             CccEEEcCcc--ccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119           46 DLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (543)
Q Consensus        46 ~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (543)
                      +++...+++.  .++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            3455555544  44556667777788888888877777776 77777788888888777777777676677777787777


Q ss_pred             CCcccccccccCCCCCCEEEccCCcCccCCc--ccccCCCccEEEecCCcccc
Q 009119          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTV  174 (543)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~--~~~~~~~L~~L~l~~~~i~~  174 (543)
                      |.++.+| .+..+++|++|++++|.+..++.  .+..+++|++|++++|.+..
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            7777765 56667777777777777776543  56677777777777776643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.47  E-value=7.4e-12  Score=120.63  Aligned_cols=104  Identities=18%  Similarity=0.278  Sum_probs=57.2

Q ss_pred             ccCCccEEEcCCCcCccCC-hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEE
Q 009119          378 EAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (543)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  456 (543)
                      .+..|+.+.+..+ ++.+. .++..+.+|+.+.+.. .++.+....|.+|.+|+.+.+.++.++.++..+|.+|.+|+.+
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            3455555555543 33332 2355556666666543 3455555556666666666666555666666666666666666


Q ss_pred             EccCCcCCCCCCCCCCCCCcCceeecCC
Q 009119          457 DLSYNIASLPENPPFSSLPHLQELYLRR  484 (543)
Q Consensus       457 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~  484 (543)
                      .+..+ +..+...+|.+|++|+++.+..
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            66532 4444555566666666665544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.44  E-value=9.7e-12  Score=119.80  Aligned_cols=313  Identities=12%  Similarity=0.142  Sum_probs=165.6

Q ss_pred             cccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCch-hccCCCcccEEEccCCccccCC-CCCcCCCC
Q 009119          154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCS  231 (543)
Q Consensus       154 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~  231 (543)
                      .++....+|+.+.+.. .++.|+..+|.++.+|+++.+..+ ++.+.. ++.++ +|+.+.+..+ +..+. .+|.. .+
T Consensus        40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~  114 (379)
T 4h09_A           40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD  114 (379)
T ss_dssp             TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred             cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence            3566678888888865 478888888888888888888654 444443 44454 5666666543 33332 23333 35


Q ss_pred             CcEEEcCCCCCCCCC-ccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCc
Q 009119          232 LAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL  310 (543)
Q Consensus       232 L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~  310 (543)
                      |+.+.+.++- +.+. ..+.. .+++.+.+..+ ++.+                     -...+..+.+++.+.+.....
T Consensus       115 L~~i~lp~~~-~~i~~~~F~~-~~l~~~~~~~~-v~~i---------------------~~~~f~~~~~l~~~~~~~~~~  170 (379)
T 4h09_A          115 LDDFEFPGAT-TEIGNYIFYN-SSVKRIVIPKS-VTTI---------------------KDGIGYKAENLEKIEVSSNNK  170 (379)
T ss_dssp             CSEEECCTTC-CEECTTTTTT-CCCCEEEECTT-CCEE---------------------CSCTTTTCTTCCEEEECTTCS
T ss_pred             cccccCCCcc-cccccccccc-ceeeeeeccce-eecc---------------------ccchhcccccccccccccccc
Confidence            6666665431 1111 11222 23333333221 1111                     122355566666665554332


Q ss_pred             CcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCC
Q 009119          311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRN  390 (543)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~  390 (543)
                      ...........                       ..............+..+.+...........+..+..++.+.+...
T Consensus       171 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~  227 (379)
T 4h09_A          171 NYVAENYVLYN-----------------------KNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG  227 (379)
T ss_dssp             SEEEETTEEEE-----------------------TTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT
T ss_pred             eeecccceecc-----------------------cccceeccccccccccccccccceeEEeecccccccccceeeeccc
Confidence            11110000000                       0000000000011122222222211122233444566777776553


Q ss_pred             cCccC-ChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCC
Q 009119          391 SIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP  469 (543)
Q Consensus       391 ~l~~l-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  469 (543)
                       +..+ ..++..+..|+.+.+..+ ++.+....|.++.+|+.+.+.. .+..++..+|.+|++|+.+.+.++.+..+...
T Consensus       228 -~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~  304 (379)
T 4h09_A          228 -VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPR  304 (379)
T ss_dssp             -CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred             -eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhh
Confidence             3332 334667777777777654 6666666677777777777753 36666767777777777777777666666667


Q ss_pred             CCCCCCcCceeecCCCccccCch-hhhccCCCcEEeCCCCccccc-cccccCCCCC
Q 009119          470 PFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSI-PEGFKNLTSL  523 (543)
Q Consensus       470 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L  523 (543)
                      +|..|++|+++.+..+ ++.++. ++.+|++|+.+.+..+ ++.+ ..+|..|..+
T Consensus       305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            7777777777777643 555543 4566777777777543 5555 3456665443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=3.2e-15  Score=129.75  Aligned_cols=146  Identities=20%  Similarity=0.250  Sum_probs=119.4

Q ss_pred             HHHhhcCeeecCCCccc-ccc------hhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCC
Q 009119            6 KAARTSGSLNLSNRSLR-DVP------NEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHN   78 (543)
Q Consensus         6 ~~~~~~~~l~l~~~~l~-~~~------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~   78 (543)
                      .....++.++++.+.+. .+|      ..+.             .+++|++|++++|.+..+| .+..+++|+.|++++|
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-------------~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLS-------------TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN   80 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-------------HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHh-------------cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC
Confidence            34456666677766665 333      2332             2788999999999999998 8999999999999999


Q ss_pred             cCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccc--cccCCCCCCEEEccCCcCccCCc--
Q 009119           79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE--  154 (543)
Q Consensus        79 ~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~i~~--  154 (543)
                      .+..+|..+..+++|++|++++|.+..++ .+..+++|++|++++|.+..++.  .+..+++|++|++++|.+...+.  
T Consensus        81 ~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  159 (198)
T 1ds9_A           81 LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred             CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence            99999988888999999999999999876 68899999999999999997764  78899999999999998874422  


Q ss_pred             ---------ccccCCCccEEE
Q 009119          155 ---------DLADCSKMSKLD  166 (543)
Q Consensus       155 ---------~~~~~~~L~~L~  166 (543)
                               .+..+++|+.|+
T Consensus       160 ~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          160 NATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCSEEC
T ss_pred             cchHHHHHHHHHhCCCcEEEC
Confidence                     256677777765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.42  E-value=1.2e-12  Score=109.97  Aligned_cols=106  Identities=26%  Similarity=0.362  Sum_probs=84.3

Q ss_pred             CccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (543)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  460 (543)
                      ..+.++++++.++.+|..+  .++|+.|++++|.++.+.+..|.++++|++|+|++|+++.++...|..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            3467778888787777654  36788888888888888777778888888888888888888777778888888888888


Q ss_pred             CcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119          461 NIASLPENPPFSSLPHLQELYLRRMQLR  488 (543)
Q Consensus       461 n~~~~~~~~~~~~~~~L~~L~l~~~~l~  488 (543)
                      |.+....+..|..+++|++|++++|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            8888777667788888888888888776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=1.7e-12  Score=109.43  Aligned_cols=107  Identities=22%  Similarity=0.322  Sum_probs=86.1

Q ss_pred             cEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCc
Q 009119          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (543)
Q Consensus       383 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  462 (543)
                      +.++++++.++.+|..+.  ++|+.|++++|.++++.+..|.++++|+.|+|++|+++.++...|..+++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            677888888887776543  778888888888888877778888888888888888888877777888888888888888


Q ss_pred             CCCCCCCCCCCCCcCceeecCCCccccCc
Q 009119          463 ASLPENPPFSSLPHLQELYLRRMQLREAP  491 (543)
Q Consensus       463 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~  491 (543)
                      +..+....|..+++|++|++++|.+...+
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            88776666888888888888888877444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=2.6e-12  Score=108.31  Aligned_cols=105  Identities=21%  Similarity=0.240  Sum_probs=71.0

Q ss_pred             ceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCC
Q 009119          406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM  485 (543)
Q Consensus       406 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  485 (543)
                      +.++++++.++.++...   .++|++|++++|.+.++....|..+++|++|++++|.+..+....|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56777777777665432   267777777777777766666777777777777777776665555666777777777777


Q ss_pred             ccccCchh-hhccCCCcEEeCCCCccccc
Q 009119          486 QLREAPTD-ILRLQQLRILDLSQNSLQSI  513 (543)
Q Consensus       486 ~l~~l~~~-~~~~~~L~~L~l~~~~l~~l  513 (543)
                      +++.++.. +..+++|+.|++++|.+...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            77766554 55667777777777766644

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=3.3e-12  Score=107.35  Aligned_cols=105  Identities=24%  Similarity=0.282  Sum_probs=72.9

Q ss_pred             CceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCC
Q 009119          405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR  484 (543)
Q Consensus       405 L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  484 (543)
                      .+.++++++.++.++...   .++|++|++++|.++++....|..+++|++|++++|.+..+.+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            467777777777766432   36777777777777777666677777777777777777766666667777777777777


Q ss_pred             CccccCchh-hhccCCCcEEeCCCCcccc
Q 009119          485 MQLREAPTD-ILRLQQLRILDLSQNSLQS  512 (543)
Q Consensus       485 ~~l~~l~~~-~~~~~~L~~L~l~~~~l~~  512 (543)
                      |+++.++.. +..+++|+.|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            777766553 5567777777777776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.36  E-value=5.2e-14  Score=134.05  Aligned_cols=181  Identities=16%  Similarity=0.142  Sum_probs=122.0

Q ss_pred             hcccccceeeeCCCCCCCC-----Chhhhc-cCCccEEEcCCCcCcc--CChhhccCCCCceeecccCcCCCCCHHHh--
Q 009119          354 RLSVTSKELSLEGMNLSAI-----PSEIWE-AGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAIL--  423 (543)
Q Consensus       354 ~~~~~l~~l~l~~~~~~~~-----~~~~~~-~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~i~~~~~~~l--  423 (543)
                      .....++.+++++|.++..     ...+.. +++|++|++++|.+++  +......+++|+.|++++|.+++.....+  
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            3356789999999988732     222222 2689999999998876  22223446689999999999987655444  


Q ss_pred             ---hCCCCCCEEEcCCCCCcccCCCc----cCCCCCccEEEccCCcCCCCC----CCCCCCCCcCceeecCCCccc----
Q 009119          424 ---TSLSSLSCLKLDNNPLRQVPSDG----FKDIPMLQILDLSYNIASLPE----NPPFSSLPHLQELYLRRMQLR----  488 (543)
Q Consensus       424 ---~~~~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~~~l~----  488 (543)
                         ...++|++|+|++|.+++.+...    +..+++|++|++++|.++...    ..++..+++|++|++++|.++    
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence               34688999999999987643332    467889999999999876532    234566788999999999888    


Q ss_pred             -cCchhhhccCCCcEEeCCCCccccc-cccc---cCCC--CCCeEe--CCCCcCC
Q 009119          489 -EAPTDILRLQQLRILDLSQNSLQSI-PEGF---KNLT--SLTELD--LSDNNIS  534 (543)
Q Consensus       489 -~l~~~~~~~~~L~~L~l~~~~l~~l-~~~l---~~~~--~L~~L~--l~~~~~~  534 (543)
                       .++..+..+++|++|+|++|.++.. ...+   ....  .|+.+.  +.++.++
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence             3445556778999999999988733 1122   2222  166666  5555553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=8e-14  Score=132.78  Aligned_cols=158  Identities=18%  Similarity=0.172  Sum_probs=120.5

Q ss_pred             cCCccEEEcCCCcCccC-----Chhhc-cCCCCceeecccCcCCCCCHHHh-hCCCCCCEEEcCCCCCcccCCCcc----
Q 009119          379 AGEITKLDLSRNSIQEL-----PPELS-SCASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGF----  447 (543)
Q Consensus       379 ~~~L~~L~l~~~~l~~l-----~~~~~-~~~~L~~L~l~~~~i~~~~~~~l-~~~~~L~~L~L~~n~l~~~~~~~~----  447 (543)
                      .+.|++|++++|.++..     ...+. .+++|+.|++++|.+++.....+ ..+++|++|+|++|.+++.+...+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            47899999999998762     22233 33789999999999886444333 346789999999999986544433    


Q ss_pred             -CCCCCccEEEccCCcCCCCCC----CCCCCCCcCceeecCCCcccc-----CchhhhccCCCcEEeCCCCcccc-----
Q 009119          448 -KDIPMLQILDLSYNIASLPEN----PPFSSLPHLQELYLRRMQLRE-----APTDILRLQQLRILDLSQNSLQS-----  512 (543)
Q Consensus       448 -~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~~~~L~~L~l~~~~l~~-----  512 (543)
                       ...++|++|++++|.++....    .++..+++|++|++++|.++.     ++..+..+++|++|+|++|.++.     
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             357899999999998765322    223678899999999999883     45566778899999999999883     


Q ss_pred             ccccccCCCCCCeEeCCCCcCCcC
Q 009119          513 IPEGFKNLTSLTELDLSDNNISAL  536 (543)
Q Consensus       513 l~~~l~~~~~L~~L~l~~~~~~~~  536 (543)
                      +...+..+++|+.|+|++|+|++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence            345567789999999999998753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=2.6e-10  Score=108.32  Aligned_cols=101  Identities=27%  Similarity=0.336  Sum_probs=51.5

Q ss_pred             EcCCC-cCccCChhhccCCCCceeeccc-CcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcC
Q 009119          386 DLSRN-SIQELPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA  463 (543)
Q Consensus       386 ~l~~~-~l~~l~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  463 (543)
                      +.+++ .++.+|. +..+++|+.|+|++ |.++.+....|.++++|+.|+|++|+++.+....|..+++|+.|+|++|.+
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            44444 4555554 45555555555553 555555554455555555555555555555544455555555555555555


Q ss_pred             CCCCCCCCCCCCcCceeecCCCccc
Q 009119          464 SLPENPPFSSLPHLQELYLRRMQLR  488 (543)
Q Consensus       464 ~~~~~~~~~~~~~L~~L~l~~~~l~  488 (543)
                      ..+.+..|..++ |+.|++.+|.+.
T Consensus        93 ~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           93 ESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ceeCHHHcccCC-ceEEEeeCCCcc
Confidence            544433343333 555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.04  E-value=4.8e-10  Score=106.50  Aligned_cols=105  Identities=20%  Similarity=0.224  Sum_probs=93.4

Q ss_pred             ceeecccC-cCCCCCHHHhhCCCCCCEEEcCC-CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecC
Q 009119          406 QTLILSRN-KIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR  483 (543)
Q Consensus       406 ~~L~l~~~-~i~~~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  483 (543)
                      ..++.+++ .++.++.  +..+++|++|+|++ |.+..++...|..+++|+.|+|++|.+..+.+..|..+++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45788887 8998877  89999999999996 99999998889999999999999999999888889999999999999


Q ss_pred             CCccccCchhhhccCCCcEEeCCCCcccc
Q 009119          484 RMQLREAPTDILRLQQLRILDLSQNSLQS  512 (543)
Q Consensus       484 ~~~l~~l~~~~~~~~~L~~L~l~~~~l~~  512 (543)
                      +|+++.+|........|+.|++.+|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccC
Confidence            99999988776655559999999998873

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=3.9e-10  Score=106.30  Aligned_cols=157  Identities=18%  Similarity=0.186  Sum_probs=89.1

Q ss_pred             hhccCCccEEEcCCCcCc----------cCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCC
Q 009119          376 IWEAGEITKLDLSRNSIQ----------ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD  445 (543)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~----------~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~  445 (543)
                      +..+++|+.|.+.+....          ++...+..+|+|+.|+++++.-..+..  + .+++|++|++..|.+......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHH
Confidence            334567777777543221          233445667778888877662112221  2 267778888777766542222


Q ss_pred             cc--CCCCCccEEEccC--CcC-CCCCC----CCC--CCCCcCceeecCCCcccc-Cchhh---hccCCCcEEeCCCCcc
Q 009119          446 GF--KDIPMLQILDLSY--NIA-SLPEN----PPF--SSLPHLQELYLRRMQLRE-APTDI---LRLQQLRILDLSQNSL  510 (543)
Q Consensus       446 ~~--~~~~~L~~L~l~~--n~~-~~~~~----~~~--~~~~~L~~L~l~~~~l~~-l~~~~---~~~~~L~~L~l~~~~l  510 (543)
                      .+  ..+|+|+.|+|+.  +.. .....    ..+  ..+|+|+.|++++|.++. .+..+   ..+++|++|+|+.|.+
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            22  2567777777752  111 11000    111  346788888887777662 12222   2467788888887777


Q ss_pred             cc-----ccccccCCCCCCeEeCCCCcCCc
Q 009119          511 QS-----IPEGFKNLTSLTELDLSDNNISA  535 (543)
Q Consensus       511 ~~-----l~~~l~~~~~L~~L~l~~~~~~~  535 (543)
                      +.     ++..+..+++|+.|++++|.|++
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            63     34444567788888888777653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.82  E-value=3.2e-09  Score=90.22  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=86.2

Q ss_pred             ccCccEEEcCcc-ccc-----cchHHhcCCCCCCEEEcCCCcCcc-----cchhhhccCCCCEEEcCCCCCCC-----CC
Q 009119           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IP  107 (543)
Q Consensus        44 ~~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~  107 (543)
                      ++.|++|+|++| .+.     .+...+...++|++|+|++|.+.+     +..++...+.|++|+|++|.+..     +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            788999999998 776     355778888999999999998873     45567778899999999998883     45


Q ss_pred             hhhcccCCccEEec--CCCCccc-----ccccccCCCCCCEEEccCCcCc
Q 009119          108 DEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT  150 (543)
Q Consensus       108 ~~~~~~~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~  150 (543)
                      .++...++|++|++  ++|.+..     +...+...+.|++|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            66778889999999  8888873     4456677789999999988775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.81  E-value=5.7e-09  Score=88.69  Aligned_cols=116  Identities=14%  Similarity=0.155  Sum_probs=95.9

Q ss_pred             cchHHhcCCCCCCEEEcCCC-cCc-----ccchhhhccCCCCEEEcCCCCCC-----CCChhhcccCCccEEecCCCCcc
Q 009119           59 KLKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK  127 (543)
Q Consensus        59 ~l~~~~~~~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~  127 (543)
                      .+...+...+.|++|+|++| .+.     .+..++..+++|++|+|++|.+.     .+...+...++|++|++++|.+.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            45567889999999999999 887     34557778899999999999987     24556777899999999999998


Q ss_pred             c-----ccccccCCCCCCEEEc--cCCcCcc-----CCcccccCCCccEEEecCCcccc
Q 009119          128 E-----LPSSLGRCLNLSDFKA--SNNCITS-----LPEDLADCSKMSKLDVEGNKLTV  174 (543)
Q Consensus       128 ~-----~~~~~~~~~~L~~L~l--~~~~~~~-----i~~~~~~~~~L~~L~l~~~~i~~  174 (543)
                      .     +...+...+.|++|++  ++|.+..     +...+...++|++|++++|.+..
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            3     5567788889999999  8898873     55667778999999999998764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=1.3e-08  Score=95.94  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=19.6

Q ss_pred             CCcccEEEccCCcccc-----CCCCCcCCCCCcEEEcCCCCCC
Q 009119          206 LSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALS  243 (543)
Q Consensus       206 ~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~l~  243 (543)
                      +++|+.|+++.|.+..     ++..+..+++|+.|++++|.++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4555555555555442     2223334556666666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=1.3e-08  Score=83.84  Aligned_cols=36  Identities=11%  Similarity=0.027  Sum_probs=20.9

Q ss_pred             CCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCC
Q 009119          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP  438 (543)
Q Consensus       403 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~  438 (543)
                      ..|+.||+++|.|++.....+.+|++|++|+|++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            345666666666555555555556666666666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=1.6e-07  Score=77.28  Aligned_cols=84  Identities=15%  Similarity=0.086  Sum_probs=63.9

Q ss_pred             cCCccEEEcCCCcCccC-ChhhccCCCCceeecccC-cCCCCCHHHhhCC----CCCCEEEcCCCC-CcccCCCccCCCC
Q 009119          379 AGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRN-KIKDWPDAILTSL----SSLSCLKLDNNP-LRQVPSDGFKDIP  451 (543)
Q Consensus       379 ~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~----~~L~~L~L~~n~-l~~~~~~~~~~~~  451 (543)
                      ...|++||+++|.+++. -..+..|++|+.|++++| .|++.....+..+    ++|++|+|++|. +++.+..++..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            45799999999998772 234678999999999999 4888777767764    579999999985 7765555566677


Q ss_pred             CccEEEccCCc
Q 009119          452 MLQILDLSYNI  462 (543)
Q Consensus       452 ~L~~L~l~~n~  462 (543)
                      +|++|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            77777777653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.15  E-value=1.7e-06  Score=72.63  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=77.3

Q ss_pred             ccCccEEEcCcc-ccc-----cchHHhcCCCCCCEEEcCCCcCc-----ccchhhhccCCCCEEEcCCCCCC-----CCC
Q 009119           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP  107 (543)
Q Consensus        44 ~~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~  107 (543)
                      .+.|+.|+|+++ .+.     .+.+++...+.|+.|+|++|.+.     .+..++...+.|++|+|+.|.+.     .+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            567888888875 665     45677888888888888888887     44557777888888888888887     344


Q ss_pred             hhhcccCCccEEecCCCC---cc-----cccccccCCCCCCEEEccCCcC
Q 009119          108 DEIGSATALVKFDCSSNQ---LK-----ELPSSLGRCLNLSDFKASNNCI  149 (543)
Q Consensus       108 ~~~~~~~~L~~L~l~~~~---~~-----~~~~~~~~~~~L~~L~l~~~~~  149 (543)
                      .++...+.|+.|+++++.   +.     .+...+..-+.|++|+++.+.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            556667778888887653   33     2445566677888888876643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.14  E-value=1.3e-06  Score=77.85  Aligned_cols=78  Identities=22%  Similarity=0.279  Sum_probs=39.1

Q ss_pred             hccCCCCEEEcCCCCCCCCC---hhhcccCCccEEecCCCCcccccccccCCC--CCCEEEccCCcCcc-CC-------c
Q 009119           88 GELHMLKSLDVSFNSIMKIP---DEIGSATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITS-LP-------E  154 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~-i~-------~  154 (543)
                      .++++|+.|+|++|.+..++   ..+..+++|+.|++++|.+..+. .+..+.  +|++|++++|.+.. ++       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            34555555555555555332   33445555555555555555441 222222  56666666665542 22       1


Q ss_pred             ccccCCCccEEE
Q 009119          155 DLADCSKMSKLD  166 (543)
Q Consensus       155 ~~~~~~~L~~L~  166 (543)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            245566666664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.04  E-value=6.1e-06  Score=69.28  Aligned_cols=114  Identities=15%  Similarity=0.166  Sum_probs=84.4

Q ss_pred             cchHHhcCCCCCCEEEcCCC-cCc-----ccchhhhccCCCCEEEcCCCCCC-----CCChhhcccCCccEEecCCCCcc
Q 009119           59 KLKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK  127 (543)
Q Consensus        59 ~l~~~~~~~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~  127 (543)
                      .+...+.+.+.|++|+|+++ .+.     .+..++.....|+.|+|++|.+.     .+..++...+.|++|++++|.+.
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34456788899999999985 776     35567888899999999999988     34556778889999999999888


Q ss_pred             -----cccccccCCCCCCEEEccCCcC---c-----cCCcccccCCCccEEEecCCcc
Q 009119          128 -----ELPSSLGRCLNLSDFKASNNCI---T-----SLPEDLADCSKMSKLDVEGNKL  172 (543)
Q Consensus       128 -----~~~~~~~~~~~L~~L~l~~~~~---~-----~i~~~~~~~~~L~~L~l~~~~i  172 (543)
                           .+.+.+..-..|++|+++++..   .     .+...+..-+.|+.|+++.+.+
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                 3445666777788888876532   3     2344556667777777766543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.01  E-value=6.3e-06  Score=73.36  Aligned_cols=94  Identities=22%  Similarity=0.216  Sum_probs=62.0

Q ss_pred             EEcCccccccchH----HhcCCCCCCEEEcCCCcCccc---chhhhccCCCCEEEcCCCCCCCCChhhcccC--CccEEe
Q 009119           50 LILAHNNIEKLKE----DLRNLPLLTVLNVSHNKLSEL---PAAIGELHMLKSLDVSFNSIMKIPDEIGSAT--ALVKFD  120 (543)
Q Consensus        50 L~l~~~~~~~l~~----~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~--~L~~L~  120 (543)
                      ++++.|....++.    ...++++|+.|+|++|.+..+   +..+..+++|+.|+|++|.+..+ ..+..+.  +|++|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence            5556664443332    235678888888888887754   34566788888888888888765 2344444  888888


Q ss_pred             cCCCCcc-ccc-------ccccCCCCCCEEEc
Q 009119          121 CSSNQLK-ELP-------SSLGRCLNLSDFKA  144 (543)
Q Consensus       121 l~~~~~~-~~~-------~~~~~~~~L~~L~l  144 (543)
                      +++|.+. .+|       ..+..+++|+.|+-
T Consensus       227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             ccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            8888876 233       23567788887754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.40  E-value=0.00018  Score=56.43  Aligned_cols=55  Identities=27%  Similarity=0.391  Sum_probs=46.2

Q ss_pred             CeeecCCCccc--ccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCc
Q 009119           12 GSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLS   81 (543)
Q Consensus        12 ~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~   81 (543)
                      +.+++++++++  ++|..+.               +++++|+|++|.++.++ ..|..+++|+.|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp---------------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP---------------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC---------------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC---------------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47899999998  9998773               45899999999999886 46888889999999888766

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.94  E-value=0.0013  Score=51.35  Aligned_cols=56  Identities=20%  Similarity=0.163  Sum_probs=39.3

Q ss_pred             cEEEccCCcCC-CCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccc
Q 009119          454 QILDLSYNIAS-LPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       454 ~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~  511 (543)
                      ..++.+++.++ ...+..  -.++|++|+|++|+|+.++.. +..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36778877775 122221  234688888888888888765 456788888888888775

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=93.17  E-value=0.16  Score=37.16  Aligned_cols=46  Identities=11%  Similarity=0.140  Sum_probs=27.0

Q ss_pred             cCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccC
Q 009119          414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (543)
Q Consensus       414 ~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  460 (543)
                      .++.+....|.+|.+|+.+.|..+ ++.++..+|.+|.+|+.+.+.+
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            455555555666666666666532 4556656666666666666654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=92.01  E-value=0.25  Score=36.10  Aligned_cols=50  Identities=18%  Similarity=0.238  Sum_probs=42.4

Q ss_pred             CCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCC
Q 009119          435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM  485 (543)
Q Consensus       435 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~  485 (543)
                      .+..++.+...+|.+|.+|+.+.+-.+ ++.+...+|..|.+|+.+.+.+.
T Consensus         4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            4 EGEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            356678888899999999999999864 67777888999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	543
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.2 bits (212), Expect = 8e-19
 Identities = 74/354 (20%), Positives = 135/354 (38%), Gaps = 24/354 (6%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           +T L A +  +  + + +  L+ L +++   N++  I   +     L +  M NN ++ +
Sbjct: 46  VTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 103

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
                  +  G    ++       ++       +   SN     +              L
Sbjct: 104 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT----ISDISALSGLTSLQQL 159

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS------ 359
           +     T    L N  T   L    +++ +       T  E LI    ++S  +      
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 219

Query: 360 --KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
              ELSL G  L  I + +     +T LDL+ N I  L P LS    L  L L  N+I +
Sbjct: 220 NLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN 277

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477
                L  L++L+ L+L+ N           ++  L  L L +N  ++ +  P SSL  L
Sbjct: 278 ISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFN--NISDISPVSSLTKL 331

Query: 478 QELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531
           Q L+    ++ +  + +  L  +  L    N +  +     NLT +T+L L+D 
Sbjct: 332 QRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 6e-17
 Identities = 76/418 (18%), Positives = 140/418 (33%), Gaps = 59/418 (14%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K +L   N+        +L  +T L      +  +   +  L+ L  ++ S N +  
Sbjct: 23  EKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD 80

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           I   + + T LV    ++NQ                   +N    +L  +        K 
Sbjct: 81  IT-PLKNLTKLVDILMNNNQ---------IADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
               N+L + SN +     +       +         +  L+ L  L+        +   
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 226 I--SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283
              +   +L      NN +S +       + L  L L+ NQLK+    A    L+ LDL+
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKDIGTLASLTNLTDLDLA 249

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
           NN +S L P +  +T L +L L  N +  +                              
Sbjct: 250 NNQISNLAP-LSGLTKLTELKLGANQISNISPL--------------------------- 281

Query: 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCA 403
                        +T+        N     S I     +T L L  N+I ++ P +SS  
Sbjct: 282 -----------AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLT 329

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
            LQ L  + NK+ D     L +L++++ L   +N +  +      ++  +  L L+  
Sbjct: 330 KLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.9 bits (180), Expect = 8e-15
 Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 33/358 (9%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +L+  ++  L +  +    S  +    +         + ++   +  L+ L  ++  +NQ
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ 77

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           L +        +L  + ++NN ++ + P           L             +      
Sbjct: 78  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRL----SVTSKELSLEGMNLSAIPSEIWEAG 380
            L               S  +       T L    ++T+ E      N  +  S + +  
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L  + N I ++ P      +L  L L+ N++KD     L SL++L+ L L NN + 
Sbjct: 198 NLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQIS 254

Query: 441 QVPSDGFKDIPMLQILDLS-YNIASLPENPPFSS-------------------LPHLQEL 480
            +       +  L  L L    I+++      ++                   L +L  L
Sbjct: 255 NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 481 YLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            L    + +    +  L +L+ L  + N +  +     NLT++  L    N IS L P
Sbjct: 313 TLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 4e-07
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 41  WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSF 100
                +L  L L  NNI  +   + +L  L  L  ++NK+S++  ++  L  +  L    
Sbjct: 303 ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGH 360

Query: 101 NSIMKIPDEIGSATALVKFDCSSN 124
           N I  +   + + T + +   +  
Sbjct: 361 NQISDLT-PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 16/82 (19%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 463 ASLPENPPFSS------LPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516
           A++ ++ P +       L    +  L +  + +  +    L Q+  L   +  ++SI +G
Sbjct: 4   ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI-DG 61

Query: 517 FKNLTSLTELDLSDNNISALPP 538
            + L +LT+++ S+N ++ + P
Sbjct: 62  VEYLNNLTQINFSNNQLTDITP 83

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 447 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLS 506
           F D  + + +       ++ +    + L  +  L   R+ ++     +  L  L  ++ S
Sbjct: 16  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFS 74

Query: 507 QNSLQSIPEGFKNLTSLTELDLSDNN 532
            N L  I    KNLT L ++ +++N 
Sbjct: 75  NNQLTDITP-LKNLTKLVDILMNNNQ 99

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.3 bits (194), Expect = 6e-17
 Identities = 56/262 (21%), Positives = 104/262 (39%), Gaps = 19/262 (7%)

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQ 125
           P   +L++ +NK++E+       L  L +L +  N I KI P        L +   S NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           LKELP  + +   L + +   N IT + + + +      +   G      S     ++  
Sbjct: 91  LKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 186 LTELIA---SKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNA 241
           + +L     +   +  +P+  G    L  L L  N+I     +S+ G  +LA+  +  N+
Sbjct: 149 MKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 242 -LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE------ 293
             +     L     L  L L++N+L +          + V+ L NN++S +         
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 294 -IGKMTTLRKLLLTGNPLRTLR 314
              K  +   + L  NP++   
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 2e-16
 Identities = 60/322 (18%), Positives = 106/322 (32%), Gaps = 50/322 (15%)

Query: 227 SGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLS 283
             C C L      +  L  +P +L        LDL +N++ E      +    L  L L 
Sbjct: 6   FRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI 63

Query: 284 NNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           NN +S + P     +  L +L L+ N L+ L   +                   E     
Sbjct: 64  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ--------------ELRVHE 109

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
                +             + L    L +   E                           
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE--------------------NGAFQGM 149

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
             L  + ++   I   P  +  SL+ L    LD N + +V +   K +  L  L LS+N 
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG------ 516
            S  +N   ++ PHL+EL+L   +L + P  +   + ++++ L  N++ +I         
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 517 -FKNLTSLTELDLSDNNISALP 537
                 S + + L  N +    
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 2e-15
 Identities = 54/330 (16%), Positives = 119/330 (36%), Gaps = 55/330 (16%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
            CS   L+++P  L                             + LD++ NK+T + +  
Sbjct: 16  QCSDLGLEKVPKDLPPDT-------------------------ALLDLQNNKITEIKDGD 50

Query: 180 IASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238
             +   L  LI   N ++ + P     L +L RL L +N++  +P  +       E  + 
Sbjct: 51  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ--ELRVH 108

Query: 239 NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPE 293
            N ++ +       L+++  ++L +N LK   +E        +LS + +++ +++ +P  
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +    +L +L L GN +  + ++ + G        L        D+ +      L  +  
Sbjct: 169 L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQ 406
                          L  +P  + +   I  + L  N+I  +           +  AS  
Sbjct: 227 N-----------NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

Query: 407 TLILSRNKIKDW--PDAILTSLSSLSCLKL 434
            + L  N ++ W    +    +   + ++L
Sbjct: 276 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 3e-14
 Identities = 49/275 (17%), Positives = 94/275 (34%), Gaps = 22/275 (8%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   CQ  L V+  S+  L  +P ++        L L  N +  ++           L  
Sbjct: 4   CPFRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK--NLHT 59

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L     +                  +L    + L L    L  +P ++ +   + +L + 
Sbjct: 60  LILINNKISKISPGA-----FAPLVKL----ERLYLSKNQLKELPEKMPK--TLQELRVH 108

Query: 389 RNSIQELPPELSSCASLQTLILSRN---KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            N I ++   + +  +   ++       K     +     +  LS +++ +  +  +P  
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168

Query: 446 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQ-QLRILD 504
                P L  L L  N  +  +      L +L +L L    +       L     LR L 
Sbjct: 169 LP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225

Query: 505 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           L+ N L  +P G  +   +  + L +NNISA+   
Sbjct: 226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.3 bits (155), Expect = 7e-12
 Identities = 55/325 (16%), Positives = 110/325 (33%), Gaps = 88/325 (27%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +  S+  L  VP ++  +                  L L +N I ++K+ D +NL  L 
Sbjct: 14  VVQCSDLGLEKVPKDLPPD---------------TALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 72  VLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-------------------- 110
            L + +NK+S++ P A   L  L+ L +S N + ++P+++                    
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 118

Query: 111 -----GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                     +               +      LS  + ++  IT++P+ L     +++L
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTEL 176

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNL------------------------LNGMPE 201
            ++GNK+T +    +     L +L  S N                         L  +P 
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261
            +     +  + LH N I +I S+                    P    K +    + L 
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSND----------------FCPPGYNTKKASYSGVSLF 280

Query: 262 SNQLKEYCVEACQLR----LSVLDL 282
           SN ++ + ++    R     + + L
Sbjct: 281 SNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 9e-12
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNK 414
               + +    + L  +P ++    +   LDL  N I E+   +  +  +L TLIL  NK
Sbjct: 9   QCHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 474
           I          L  L  L L  N L+++P         LQ L +  N  +      F+ L
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGL 123

Query: 475 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534
             +  + L    L                     S       F+ +  L+ + ++D NI+
Sbjct: 124 NQMIVVELGTNPL--------------------KSSGIENGAFQGMKKLSYIRIADTNIT 163

Query: 535 ALPPELVS 542
            +P  L  
Sbjct: 164 TIPQGLPP 171

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 6e-12
 Identities = 55/265 (20%), Positives = 87/265 (32%), Gaps = 14/265 (5%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                   L  +P  I      +++ L GN +  + ++          + L      +  
Sbjct: 15  TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRA-----CRNLTILWLHSNV 67

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                               S    L  ++    P+     G +  L L R  +QEL P 
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVD----PATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 399 LSSC-ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457
           L    A+LQ L L  N ++  PD     L +L+ L L  N +  VP   F+ +  L  L 
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 458 LSYNIASLPENPPFSSLPHLQELYLRR-MQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516
           L  N  +      F  L  L  LYL            +  L+ L+ L L+ N        
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 517 FKNLTSLTELDLSDNNIS-ALPPEL 540
                 L +   S + +  +LP  L
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 47/290 (16%), Positives = 93/290 (32%), Gaps = 26/290 (8%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED----L 64
               + +   + L+ VP  +                   Q++ L  N I  +        
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIPAA---------------SQRIFLHGNRISHVPAASFRAC 55

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           RNL +L + +    ++         L     L  +       P        L        
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 125 QLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
            L+EL          L      +N + +LP+D   D   ++ L + GN+++ +       
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNN 240
              L  L+  +N +    P     L RL+ L L  N + ++   +++   +L    + +N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSG 289
                       + L      S+++   C    +L    +  L+ N L G
Sbjct: 236 PWVCDCRARPLWAWLQKFRGSSSEVP--CSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 52/250 (20%), Positives = 85/250 (34%), Gaps = 11/250 (4%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKEL 129
              +     L  +P  I      + + +  N I  +P     +   L      SN L  +
Sbjct: 14  VTTSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 130 PSSLGRCLNLSDFKASNNCITS---LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            ++    L L +    ++        P       ++  L ++   L  L   L      L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 187 TELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSA 244
             L    N L  +  +T   L  L  L LH NRI S+P  +  G  SL    +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 245 L-PAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLR 301
           + P     L +L TL L +N L     EA      L  L L++N              L+
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 302 KLLLTGNPLR 311
           K   + + + 
Sbjct: 252 KFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 50/258 (19%), Positives = 76/258 (29%), Gaps = 32/258 (12%)

Query: 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
              + L  N +S +P    +             L  L              +    L E 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRN---------LTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQEL 395
            D   +     +             L L+   L  +   ++     +  L L  N++Q L
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 396 PPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454
           P +      +L  L L  N+I   P+     L SL  L L  N +  V    F+D+  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLR-------------RMQLREAPTDI------- 494
            L L  N  S       + L  LQ L L                 L++            
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264

Query: 495 -LRLQQLRILDLSQNSLQ 511
             RL    +  L+ N LQ
Sbjct: 265 PQRLAGRDLKRLAANDLQ 282

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (153), Expect = 7e-12
 Identities = 49/195 (25%), Positives = 73/195 (37%), Gaps = 25/195 (12%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKD- 417
            E++ +  NL+A+P ++ +  + T L LS N +       L     L  L L R ++   
Sbjct: 13  LEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 418 WPDAILTSLSSLSCLKLDN--------------------NPLRQVPSDGFKDIPMLQILD 457
             D  L  L +L                           N L  +P    + +  LQ L 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG 516
           L  N          +  P L++L L    L E P  +L  L+ L  L L +NSL +IP+G
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190

Query: 517 FKNLTSLTELDLSDN 531
           F     L    L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 4e-10
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 5/206 (2%)

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C    L  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227
           +  +LT L  +         +L  ++     +         ++ +  ++   L + +   
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNN 285
                  +  GN   +  P  L    KL  L L +N L E           L  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLR 311
           SL  +P        L    L GNP  
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 4/199 (2%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIM 104
              ++     N+  L  DL      T+L++S N L     A +     L  L++    + 
Sbjct: 11  SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           K+  +             +                    + N   +     L    ++ +
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           L ++GN+L  L   L+     L +L  + N L  +    +  L  L  L L +N + +IP
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 224 SSISGCCSLAEFYMGNNAL 242
               G   L   ++  N  
Sbjct: 189 KGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 6e-08
 Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
            +N   R+L  +P ++ K+                  L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDLPKD---------------TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +        G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L      +   N   T  P  L    K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 45/229 (19%), Positives = 72/229 (31%), Gaps = 38/229 (16%)

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284
            +S   S  E       L+ALP +L K                          ++L LS 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK------------------------DTTILHLSE 40

Query: 285 NSLSGLPPE-IGKMTTLRKLLLTGNP---------LRTLRSSLVNGPTPALLKYLRSRLP 334
           N L       +   T L +L L             L  L +  ++      L  L   LP
Sbjct: 41  NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP 100

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMN--LSAIPSEIWEAGEITKLDLSRNSI 392
                + S  +   + +     +   +      N   +  P  +    ++ KL L+ N++
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 393 QELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            ELP   L+   +L TL+L  N +   P         L    L  NP  
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 471 FSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 529
            S +    E+   +  L   P D+ +     IL LS+N L +         T LT+L+L 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 530 DNN 532
              
Sbjct: 64  RAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 493 DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           ++ ++     ++  + +L ++P         T L LS+N +      
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLA 49

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 61.8 bits (148), Expect = 5e-11
 Identities = 59/339 (17%), Positives = 100/339 (29%), Gaps = 30/339 (8%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
             EL  +   L+ +PE    L  L       N +  +P       SL    + NN L AL
Sbjct: 40  AHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELP---QSLKSLLVDNNNLKAL 93

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
                 L  L      SN   E   E        +   +N+     P++           
Sbjct: 94  S----DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365
                     +L              +LP+   S  S    + I            L+  
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425
             + + + +       +  L++  N + +LP    S   L       + + + P      
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP------ 263

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRR 484
                      N             P L+ L++S N +  LP     +  P L+ L    
Sbjct: 264 -----PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP-----ALPPRLERLIASF 313

Query: 485 MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSL 523
             L E P      Q L+ L +  N L+  P+  +++  L
Sbjct: 314 NHLAEVPEL---PQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
             P L  LNVS+NKL ELPA    L   + L  SFN + ++P+   +   L +     N 
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQN---LKQLHVEYNP 335

Query: 126 LKELPSSLGRCLNL 139
           L+E P       +L
Sbjct: 336 LREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 517
              N +S          P L+EL +   +L E P    RL++L     S N L  +PE  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVPE-- 321

Query: 518 KNLTSLTELDLSDNNISALPPELVSV 543
               +L +L +  N +   P    SV
Sbjct: 322 -LPQNLKQLHVEYNPLREFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +EL++    L  +P+       + +L  S N + E+P       +L+ L +  N ++++P
Sbjct: 287 EELNVSNNKLIELPALP---PRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFP 340

Query: 420 DAILTSLSSLSCLKLDN 436
           D       S+  L++++
Sbjct: 341 D----IPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
             SL E  + NN L  LPA   +L +L       N L E  V      L  L +  N L 
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAE--VPELPQNLKQLHVEYNPLR 337

Query: 289 GLPPEIGKMTTLR 301
             P     +  LR
Sbjct: 338 EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 8e-08
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 29  YKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88
           Y N               L++L +++N + +L      L     L  S N L+E+P    
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVP---E 321

Query: 89  ELHMLKSLDVSFNSIMKIPDEIGSATAL 116
               LK L V +N + + PD   S   L
Sbjct: 322 LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435
                 + +L++S N + ELP        L+ LI S N + + P+       +L  L ++
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPE----LPQNLKQLHVE 332

Query: 436 NNPLRQVPSDGFKDIPMLQI 455
            NPLR+ P D  + +  L++
Sbjct: 333 YNPLREFP-DIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 6e-07
 Identities = 52/338 (15%), Positives = 92/338 (27%), Gaps = 51/338 (15%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L L+N  L  +P                     L+ L+ + N++ +L E  ++   L  L
Sbjct: 43  LELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQS---LKSL 83

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
            V +N L  L      L  L   +     + ++ +        V  +         PS  
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSK---------------------LDVEGNKL 172
                 +  +                   S                         E   L
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             L+     +  + T      +L                        +S           
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
              Y  N + + + +       L  L++ +N+L E  + A   RL  L  S N L+ +P 
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPRLERLIASFNHLAEVPE 321

Query: 293 EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
                  L++L +  NPLR           P  ++ LR
Sbjct: 322 LPQN---LKQLHVEYNPLREFPDI------PESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 53/360 (14%), Positives = 97/360 (26%), Gaps = 49/360 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             +L L +  +  L E   +L     L  S N L+ELP        LKSL V  N++  +
Sbjct: 40  AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQS---LKSLLVDNNNLKAL 93

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
            D +      +    +  +      +      +     S   +  LP  L   +  +   
Sbjct: 94  SD-LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            E  +L  L           +        L+      G+       +L     L+   + 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +           +     +              L    + E            L   N S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
            + +        +L +L ++ N L  L         PAL   L                 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIEL---------PALPPRL----------------- 306

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                        + L     +L+ +P        + +L +  N ++E P    S   L+
Sbjct: 307 -------------ERLIASFNHLAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 57  IEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATAL 116
           + +L++ L        L +++  LS LP     L   +SL  S NS+ ++P+   S  +L
Sbjct: 29  VSRLRDCLDRQ--AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSL 83

Query: 117 VKFDCSSNQLKELPSSLGRC 136
           +  + +   L +LP  L   
Sbjct: 84  LVDNNNLKALSDLPPLLEYL 103

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 499 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 542
           Q   L+L+   L S+PE       L  L  S N+++ LP    S
Sbjct: 39  QAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQS 79

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 19/82 (23%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+SN  L ++P    +                L++LI + N++ ++ E  +N   L  
Sbjct: 288 ELNVSNNKLIELPALPPR----------------LERLIASFNHLAEVPELPQN---LKQ 328

Query: 73  LNVSHNKLSELPAAIGELHMLK 94
           L+V +N L E P     +  L+
Sbjct: 329 LHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535
              EL L  + L   P        L  L  S NSL  +PE  ++L SL   + +   +S 
Sbjct: 39  QAHELELNNLGLSSLPELP---PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 536 LPPEL 540
           LPP L
Sbjct: 96  LPPLL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 269 CVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319
            +  C  R    L+L+N  LS LP        L  L+ + N L  L     +
Sbjct: 31  RLRDCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQS 79

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 6e-10
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 11/252 (4%)

Query: 70  LTVLNVSHNKLS---ELPAAIGELHMLKS--LDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           +  L++S   L     +P+++  L  L    +    N +  IP  I   T L     +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 125 QLKELPSSLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
            +          +    +   + N    +LP  ++    +  +  +GN+++    +   S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 183 WTMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ++ L     I+   L   +P T  +L+                       +  + ++  N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQL-RLSVLDLSNNSLSGLPPEIGKMT 298
           +L+    ++G    L  LDL +N++     +   QL  L  L++S N+L G  P+ G + 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 299 TLRKLLLTGNPL 310
                    N  
Sbjct: 292 RFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.0 bits (115), Expect = 7e-07
 Identities = 37/271 (13%), Positives = 77/271 (28%), Gaps = 18/271 (6%)

Query: 276 RLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           R++ LDLS  +L     +P  +  +  L  L + G                 L     + 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
              +       ++   +                      +P  I     +  +    N I
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFS---------YNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
               P+     S     ++ ++ +       T  +        +  + +  +        
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ 511
                     +   +        +L  L LR  ++    P  + +L+ L  L++S N+L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 512 -SIPEGFKNLTSLTELDLSDNNI---SALPP 538
             IP+   NL        ++N     S LP 
Sbjct: 282 GEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 52  LAHNNIE-KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
           L +N I   L + L  L  L  LNVS N L       G L        + N
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L L+   +  L   L     +  L LS N+++  P A+  +L  L  L+  +N L  V  
Sbjct: 3   LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDG 60

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500
               ++P LQ L L  N +       P  S P L  L L+   L +      RL ++
Sbjct: 61  --VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 4/109 (3%)

Query: 48  QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP 107
           + L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N++  + 
Sbjct: 1   RVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 108 DEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
                          +N+L++      L  C  L       N +     
Sbjct: 60  GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 31/125 (24%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271
           L L     L++   +     +    + +N L ALP  L  L  L  L    N L+     
Sbjct: 3   LHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 272 ACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
           A   RL  L L NN L        +     L  L L GN L              + + L
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---------EGIQERL 112

Query: 330 RSRLP 334
              LP
Sbjct: 113 AEMLP 117

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 26/114 (22%)

Query: 454 QILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL------------- 500
           ++L L++    L        L  +  L L   +LR  P  +  L+ L             
Sbjct: 1   RVLHLAHK--DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 501 ---------RILDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPPELVSV 543
                    + L L  N LQ     +   +   L  L+L  N++         +
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           + L L   +L+ +   + +   +T LDLS N ++ LPP L++   L+ L  S N +++  
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPENPP--FSSLP 475
                    L  L L NN L+Q  +       P L +L+L  N +             LP
Sbjct: 60  GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 476 HLQEL 480
            +  +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
             +   L  L   L + L ++    S+N + +LP  LA    +  L    N L  +    
Sbjct: 4   HLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 180 IASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
                 L EL+   N L      + + S  RL+ L+L  N +            +
Sbjct: 63  N--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 10/123 (8%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194
           R L+L+     +  +T L   L     ++ LD+  N+L  L   L A   +     +   
Sbjct: 1   RVLHLA-----HKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 54

Query: 195 LLNGMPETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
                 + + +L RL  L L  NR+   +    +  C  L    +  N+L        +L
Sbjct: 55  --LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 253 SKL 255
           +++
Sbjct: 113 AEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 40/157 (25%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           VL L++  L+ L   + ++  +  L L+ N LR L  +L       +L+           
Sbjct: 2   VLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA---------- 50

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP- 397
                                        N       +     + +L L  N +Q+    
Sbjct: 51  ---------------------------SDNALENVDGVANLPRLQELLLCNNRLQQSAAI 83

Query: 398 -ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433
             L SC  L  L L  N +             L  + 
Sbjct: 84  QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 7/132 (5%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           LDL    I  +    ++      +  S N+I+         L  L  L ++NN + ++  
Sbjct: 23  LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTLLVNNNRICRIGE 80

Query: 445 DGFKDIPMLQILDLS-YNIASLPENPPFSSLPHLQELYLRRMQLREAPTD----ILRLQQ 499
              + +P L  L L+  ++  L +  P +SL  L  L + R  +          I ++ Q
Sbjct: 81  GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ 140

Query: 500 LRILDLSQNSLQ 511
           +R+LD  +  L+
Sbjct: 141 VRVLDFQKVKLK 152

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 12/42 (28%), Positives = 15/42 (35%)

Query: 497 LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
             + R LDL    +  I      L     +D SDN I  L  
Sbjct: 17  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 58

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 467 ENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTEL 526
           +   +++    +EL LR  ++         L Q   +D S N ++ +  GF  L  L  L
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTL 68

Query: 527 DLSDNNISALPP 538
            +++N I  +  
Sbjct: 69  LVNNNRICRIGE 80

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 1/102 (0%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 3   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153
                     ++   +          +L++   +NN +  L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 103

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 8e-04
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +EL L G  +  I +      +   +D S N I++L         L+TL+++ N+I    
Sbjct: 21  RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF-PLLRRLKTLLVNNNRICRIG 79

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGF----KDIPMLQILDLSYNIASLPENPPFSSLP 475
           + +  +L  L+ L L NN L ++         K +  L IL                 +P
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 476 HLQELYLRRMQLRE 489
            ++ L  ++++L+E
Sbjct: 140 QVRVLDFQKVKLKE 153

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 13/182 (7%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPEDLADCSKM--SKLDVEGNKLTV 174
           DC+   LKE+P  +      L L+D    N       + L                   +
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLND----NELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLA 233
             N    +  +    +    +     +    L +L  L+L+ N+I  + P S     SL 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPP 292
              + +N  +           L    L+    +  C    ++R + + DL ++       
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAAR--CGAPSKVRDVQIKDLPHSEFKCSSE 187

Query: 293 EI 294
             
Sbjct: 188 NS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 16/194 (8%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   C    + +D +   L  +P +I       +LLL  N L  + S  + G  P L+K 
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKL 59

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
              R         +      I          KE+                  ++  L+L 
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI---------SNKMFLGLHQLKTLNLY 110

Query: 389 RNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N I  + P       SL +L    +   +    +      L    L+    R       
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAAR---CGAP 166

Query: 448 KDIPMLQILDLSYN 461
             +  +QI DL ++
Sbjct: 167 SKVRDVQIKDLPHS 180

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 5e-07
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 477 LQELYLRRMQLREAPTDIL--RLQQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLS 529
           +Q L ++  +L +A    L   LQQ +++ L    L     + I    +   +L EL+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 530 DNNIS 534
            N + 
Sbjct: 64  SNELG 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 45  VDLQKLILAHNNI--EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           +D+Q L +    +   +  E L  L    V+ +    L+E     + +A+     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 98  VSFNSI 103
           +  N +
Sbjct: 62  LRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 9e-05
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 12/92 (13%)

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-----RLQQLRILDLS 506
           +Q LD+    ++          L   Q + L    L EA    +         L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 507 QNSL-----QSIPEGFK-NLTSLTELDLSDNN 532
            N L       + +G +     + +L L +  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 498 QQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS 534
             LR+L L+   +      S+        SL ELDLS+N + 
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 410

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 382 ITKLDLSRNSI-----QELPPELSSCASLQTLILSRNKIKD-----WPDAILTSLSSLSC 431
           +  L L+   +       L   L +  SL+ L LS N + D       +++      L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 432 LKLDNNPLRQVPSDGFKDI----PMLQIL 456
           L L +    +   D  + +    P L+++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 470 PFSSLPHLQELYLRRMQLREAPTDIL-----RLQQLRILDLSQNSL-----QSIPEGFK- 518
                  L+ L+L    + ++    L         LR LDLS N L       + E  + 
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 519 NLTSLTELDLSDNNISALPPELV 541
               L +L L D   S    + +
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 404 SLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLR----QVPSDGFKDIPMLQILDL 458
            +Q+L +   ++ D     +L  L     ++LD+  L     +  S   +  P L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 459 SYN------IASLPENPPFSSLPHLQELYLRRMQ 486
             N      +  + +    +    +Q+L L+   
Sbjct: 63  RSNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 17/103 (16%)

Query: 223 PSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEA----- 272
                    L   ++ +  +S     +L A L     L  LDL +N L +  +       
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 273 --CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
                 L  L L +   S    +      L+ L      LR +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR-----LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 356 SVTSKELSLEGMNLS-AIPSEIWEA-GEITKLDLSRNSI-----QELPPELSSCASLQTL 408
           S+  + L ++   LS A  +E+     +   + L    +     +++   L    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 409 ILSRNKIKDWPDAILTSLSSLSCLKL 434
            L  N++ D     +         K+
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 25/107 (23%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRC--LNLSDFKASNNCIT 150
           ++SLD+    +                  S  +  EL   L +C  + L D   +     
Sbjct: 4   IQSLDIQCEEL------------------SDARWAELLPLLQQCQVVRLDDCGLTEARCK 45

Query: 151 SLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIAS 192
            +   L     +++L++  N+L       +   L      + +L   
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTEL 189
           R L L+D   S++  +SL   L     + +LD+  N L       L  ++     +L +L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 190 IASKNLLNG 198
           +      + 
Sbjct: 432 VLYDIYWSE 440

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 8e-07
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSL 510
              IL L+ N      N  F+     +        L E P D+        ILD+S+  +
Sbjct: 154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 213

Query: 511 QSIPEG-FKNLTSLTELDLSDNNISALPP 538
            S+P    +NL  L        N+  LP 
Sbjct: 214 HSLPSYGLENLKKLRARST--YNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
               +  +   N +++ P+ +    S    L +    +  +PS G +++  L+     YN
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST-YN 234

Query: 462 IASLP 466
           +  LP
Sbjct: 235 LKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 8e-05
 Identities = 24/214 (11%), Positives = 58/214 (27%), Gaps = 33/214 (15%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
           +++    +   ++ IPS++       +L      ++ +     S    L+ + +S+N + 
Sbjct: 9   SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH 476
           +  +A + S                +  +      +  +  L  +   +   P    +  
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 477 LQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS------------------------ 512
           LQ++ L         T           +     L                          
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 513 ------IPEGFKNLTSLTELDLSDNNISALPPEL 540
                   + F   +    LD+S   I +LP   
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 220

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 30/234 (12%), Positives = 60/234 (25%), Gaps = 23/234 (9%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C     V     + ++ +P ++       +L      LR ++    +G        +   
Sbjct: 6   CHCSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                      +    +         +          +    +           L     
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 393 -------------------QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433
                               E    +        L L++N I++  +             
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
            DNN L ++P+D F       ILD+S   I SLP      +L  L+      ++
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
               +    L +SR +I   P   L +L  L         L+++P+
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 64  LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP 107
                   +L++S  ++  LP+  +  L  L++   S  ++ K+P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLP 239

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 19/164 (11%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           I ++  + + I+ +   +    ++  L L+ NK+ D              L  +      
Sbjct: 48  IDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS 106

Query: 442 VPSDGFKDIPMLQILDLSYNIASLP----------------ENPPFSSLPHLQELYLRRM 485
              D  K   +    +   +I  L                 +    S L  L  L L   
Sbjct: 107 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 166

Query: 486 QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLS 529
           Q+ +    +  L +L+ L LS+N +  +      L +L  L+L 
Sbjct: 167 QISDIV-PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 16/210 (7%)

Query: 239 NNALSALPAELGK------LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
            +    +P  + +       ++    +L    + +   +     +  +  +N+ +  +  
Sbjct: 4   GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 63

Query: 293 EIGKMTTLRKLLLTGNPLRT------LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
            I  +  + KL L GN L        L++          +K L S     +    S    
Sbjct: 64  -IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
            +  +   + +   E    G N     + +    ++  L L  N I ++ P L+    LQ
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQ 181

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
            L LS+N I D     L  L +L  L+L +
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFS 209

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469
           L   +++     I++     S   LD   LR  P        +  +L+   ++A+     
Sbjct: 4   LKPEQVEQLK-LIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATLRII 60

Query: 470 PFSSLPHLQELYLRRMQLR---EAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTE 525
              ++P L  L L   +L    +  + + +   L+IL+LS N L+S  E        L E
Sbjct: 61  -EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119

Query: 526 LDLSDNNISALPPE 539
           L L  N++S    +
Sbjct: 120 LWLDGNSLSDTFRD 133

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 5/153 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    +E+LK  +      +   +    L   P  +   ++   L+   +    +     
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 112 SATALVKFDCSSNQL---KELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDV 167
           +   L+  + S+N+L    ++ S + +  NL     S N + S  E D     K+ +L +
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200
           +GN L+    +     + + E       L+G  
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE 155

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 32/135 (23%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           G    LDL         P+L +      L    +        I  ++  L  L L NN L
Sbjct: 22  GSQQALDLKGLRS---DPDLVAQNIDVVLNRRSSMAATLRI-IEENIPELLSLNLSNNRL 77

Query: 440 RQVP--SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD---- 493
            ++   S   +  P L+IL+LS N               L+EL+L    L +   D    
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 494 ----ILRLQQLRILD 504
                 R  +L  LD
Sbjct: 138 ISAIRERFPKLLRLD 152

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 6e-06
 Identities = 26/172 (15%), Positives = 47/172 (27%), Gaps = 17/172 (9%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           IT L      +  +   +    +L  L L  N+I D       +  +   L  +      
Sbjct: 43  ITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSL---------------PHLQELYLRRMQ 486
             +       +        ++  L        L                   +       
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161

Query: 487 LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
                T +  L +L  L    N +  I     +L +L E+ L +N IS + P
Sbjct: 162 QVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 10/213 (4%)

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           L+    +    + + +   +A    ++ L      ++ +   +  +  L  L L  N + 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQIT 76

Query: 312 TLRS-----SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            L        +             S +   +  +        IT  T L+  S    L  
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL 426
                            +     N+       L++ + L TL    NKI D     L SL
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
            +L  + L NN +  V      +   L I+ L+
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 9/193 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L      +  + E ++ L  L  L +  N++++L        + +            
Sbjct: 43  ITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +   +    +        + L     L         I+ L          +   
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL------AGLTNLQY 155

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +      V     +A+ + LT L A  N ++ +   + SL  LI + L  N+I  +   +
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PL 213

Query: 227 SGCCSLAEFYMGN 239
           +   +L    + N
Sbjct: 214 ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 32/241 (13%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
            L     +    + +++      +L  + +L      +  I   +     L+  +   NQ
Sbjct: 17  ALANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           + +L        NL+           L    A     S   ++     +     +A  + 
Sbjct: 75  ITDLA----PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           L  L    N +  +    G  +       +     S  + ++    L      +N +S +
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISDI 188

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
              L  L  L                        + L NN +S + P +   + L  + L
Sbjct: 189 S-PLASLPNL----------------------IEVHLKNNQISDVSP-LANTSNLFIVTL 224

Query: 306 T 306
           T
Sbjct: 225 T 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 463 ASLPENPPFSS------LPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516
            S+ +    +       L +  ++   +  + +  T    L  +  L      + +I EG
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTI-EG 58

Query: 517 FKNLTSLTELDLSDNNI 533
            + L +L  L+L DN I
Sbjct: 59  VQYLNNLIGLELKDNQI 75

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 44/339 (12%), Positives = 89/339 (26%), Gaps = 42/339 (12%)

Query: 43  EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           E   L+   +   + + +   L     +  + +S N +       L   I     L+  +
Sbjct: 6   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 98  VSFNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDF-------------- 142
            S     ++ DEI  A   L++      +L  +  S       +                
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 143 ---------------KASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                           A      ++ +   +   +  +    N+L   S    A      
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
            L+ +  ++       G    L+    +   +  +    +    L    +     S    
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE------IGKMTTLR 301
               L+        +  + +   +   + L  L L  N +              KM  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340
            L L GN        +V+          R  L E +D E
Sbjct: 306 FLELNGNRFSEE-DDVVDEIREVFSTRGRGELDELDDME 343

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 354 RLSVTSKELSLEGM---NLSAIPSEIWEAGEITKLDLSRNSI-----QELPPELSSCASL 405
           R S+  K L L+ +   +  ++ + + E   + ++ LS N+I     + L   ++S   L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           +    S        D I  +L  L    L    L  
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 97

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 495 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 542
           +  + L++  ++    +S+        S+ E+ LS N I       +S
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS 52

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLSD 530
            L+   +     +     +L    ++ + LS N++     + + E   +   L   + SD
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 531 NNISALPPEL 540
                +  E+
Sbjct: 69  IFTGRVKDEI 78

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKD----WPDAILTSLSSLSCLKLDNNPLR 440
             ++    + +   L    S++ ++LS N I      W    + S   L   +  +    
Sbjct: 13  DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 441 QVPSDGFKDIPML 453
           +V  +  + + +L
Sbjct: 73  RVKDEIPEALRLL 85

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 39/322 (12%), Positives = 82/322 (25%), Gaps = 21/322 (6%)

Query: 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSN 284
           SL    +      ++ A L +   +  + L  N +              +  L + + S+
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
                +  EI +   L    L   P       L             ++ P  +     T 
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCP------KLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
            E L      L   +       +   A+  +   A  +  +   RN ++    +  +   
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464
               +L   K+             L         L+ +         +          + 
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSL-----QSIPEG-FK 518
                   +   L     R           L    L+ L L  N +     +++     +
Sbjct: 243 PNLRELGLNDCLLSA---RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 519 NLTSLTELDLSDNNISALPPEL 540
            +  L  L+L+ N  S     +
Sbjct: 300 KMPDLLFLELNGNRFSEEDDVV 321

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 3/147 (2%)

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
           P+         L  +R+   D    +  + +       +   L+ +     + +  L+ L
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SIP 514
            +  +         F   P L  L L    L       ++   L+ L LS N L      
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

Query: 515 EGFKNLTSLTELDLSDNNIS-ALPPEL 540
              +         + +  +       L
Sbjct: 122 RWLQRWEEEGLGGVPEQKLQCHGQGPL 148

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAEL-GKLSKLGTLDLHS 262
                  L   ++  L     + G  +L E Y+     L  L       L +L  L +  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 263 NQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           + L+    +A     RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L    +     L  L   K
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 194 NLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL--SALPAELG 250
           + L  + P+      RL RL+L  N + S+        SL E  +  N L  S     L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 251 KLSKLGTLDLHSNQLK 266
           +  + G   +   +L+
Sbjct: 126 RWEEEGLGGVPEQKLQ 141

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 10/177 (5%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
             L   N++   S+  +  ++T L   R  I+ +   +    +L  +  S N++ D    
Sbjct: 23  TVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP- 79

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481
                       +D        +D      +  +  L+     + +  P  +L +L  L 
Sbjct: 80  -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134

Query: 482 LRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
           L    + +           ++   S       P    NLT+L  LD+S N +S +  
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV 189

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 24/187 (12%), Positives = 59/187 (31%), Gaps = 9/187 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K +L   N+        +L  +T L      +  +   +  L+ L  ++ S N +  
Sbjct: 19  EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD 76

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           I         +     ++             L             +   D+     ++ L
Sbjct: 77  ITPLKNLTKLVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +        +S+    S     + +   +      + + +L+ L RLD+  N++  I   
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS-V 189

Query: 226 ISGCCSL 232
           ++   +L
Sbjct: 190 LAKLTNL 196

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 177 NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 236
            +++A+     EL      +  M  T+ +L     L L  N I  I  S+SG  +L    
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILS 76

Query: 237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP--PEI 294
           +G N +  +         L  L +  NQ+         + L VL +SNN ++      ++
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
             +  L  LLL GNPL        N  T      +  RLP
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKE--NNATSEYRIEVVKRLP 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	543
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.36
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.06
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=6e-27  Score=225.45  Aligned_cols=122  Identities=23%  Similarity=0.348  Sum_probs=62.5

Q ss_pred             cCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEc
Q 009119          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (543)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  458 (543)
                      +++|++++++++.++.++. +..++.++.+.+++|.++++..  +..++++++|++++|+++++.  .+..+++|++|++
T Consensus       262 ~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L  336 (384)
T d2omza2         262 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFF  336 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEEC
T ss_pred             cccCCEeeccCcccCCCCc-cccccccccccccccccccccc--cchhcccCeEECCCCCCCCCc--ccccCCCCCEEEC
Confidence            3444555555544444432 3444555555555555544322  345555555555555555443  1445555555555


Q ss_pred             cCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCC
Q 009119          459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN  508 (543)
Q Consensus       459 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~  508 (543)
                      ++|.++.+.  .+..+++|++|++++|+++.++. +.++++|+.|+|++|
T Consensus       337 ~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         337 ANNKVSDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            555554432  34555566666666665555442 455566666666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=9e-27  Score=224.19  Aligned_cols=342  Identities=27%  Similarity=0.408  Sum_probs=219.2

Q ss_pred             hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEe
Q 009119           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV  167 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l  167 (543)
                      ..+.+|++|+++++.++.+ ..+..+++|++|++++|+++.++ .++++++|++|++++|.+..++ .+..+++|+.+++
T Consensus        41 ~~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~  117 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTL  117 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEEC
T ss_pred             HHhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccccc-ccccccccccccc
Confidence            3456777777777777766 35666777777777777777765 3667777777777777776654 3566666666666


Q ss_pred             cCCcccccchhhhcccccccEEECCCCcCCcCchhc-cCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCC
Q 009119          168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP  246 (543)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~  246 (543)
                      +++.+..+..  ......+.......+.+..+.... ................                           
T Consensus       118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  168 (384)
T d2omza2         118 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL---------------------------  168 (384)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC---------------------------
T ss_pred             cccccccccc--ccccccccccccccccccccccccccccccccccccccchh---------------------------
Confidence            6665554433  222233333333333332221110 0001111111111000                           


Q ss_pred             ccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHH
Q 009119          247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL  326 (543)
Q Consensus       247 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  326 (543)
                      ..+...+.........+.............++.+++++|.++.++. ...+++|+++++++|.+                
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l----------------  231 (384)
T d2omza2         169 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQL----------------  231 (384)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC----------------
T ss_pred             hhhccccccccccccccccccccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCC----------------
Confidence            1111222222222222222222222222223333344433333322 23444555555555543                


Q ss_pred             HHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCc
Q 009119          327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ  406 (543)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~  406 (543)
                                                                 +.++ .+..+++|+.+++++|.+++++. +..+++|+
T Consensus       232 -------------------------------------------~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~  266 (384)
T d2omza2         232 -------------------------------------------KDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLT  266 (384)
T ss_dssp             -------------------------------------------CCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCS
T ss_pred             -------------------------------------------CCcc-hhhcccccchhccccCccCCCCc-ccccccCC
Confidence                                                       3322 34556788999999998888764 78899999


Q ss_pred             eeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCc
Q 009119          407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ  486 (543)
Q Consensus       407 ~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~  486 (543)
                      .|+++++++++..+  +..++.++.+.+++|.+..+.  .+..+++++++++++|.+....  .+..+++|++|++++|+
T Consensus       267 ~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         267 ELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSC
T ss_pred             EeeccCcccCCCCc--ccccccccccccccccccccc--ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCC
Confidence            99999999988764  788999999999999988754  3788999999999999998763  37899999999999999


Q ss_pred             cccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCC
Q 009119          487 LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN  531 (543)
Q Consensus       487 l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~  531 (543)
                      ++.++ .+..+++|++|++++|++++++. +.++++|+.|+|++|
T Consensus       341 l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            99886 58889999999999999999864 899999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.4e-24  Score=197.80  Aligned_cols=244  Identities=22%  Similarity=0.324  Sum_probs=207.2

Q ss_pred             hcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCccc-chhh
Q 009119           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI   87 (543)
Q Consensus        10 ~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~-~~~~   87 (543)
                      ..+.+||++.+++++|..++               +++++|++++|.++++++ +|.++++|++|++++|.+..+ |.+|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~---------------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             cCCEEEecCCCCCccCCCCC---------------CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh
Confidence            34789999999999999874               459999999999999985 799999999999999999987 5589


Q ss_pred             hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccc-cccCCCCCCEEEccCCcCc---cCCcccccCCCcc
Q 009119           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~i~~~~~~~~~L~  163 (543)
                      ..+++|++|++++|+++.+|..+  ...+..|...++.+..++. .+.....++.+....+...   ..+..+..+++|+
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~  153 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  153 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             hCCCccCEecccCCccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccC
Confidence            99999999999999999887653  5688999999999887753 4567778888998887655   3345678889999


Q ss_pred             EEEecCCcccccchhhhcccccccEEECCCCcCCcC-chhccCCCcccEEEccCCccccC-CCCCcCCCCCcEEEcCCCC
Q 009119          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA  241 (543)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~  241 (543)
                      .++++++.+..++..   ..+++++|++.++..... +..+..++.++.|++++|.+..+ +..+..+++|++|++++|.
T Consensus       154 ~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~  230 (305)
T d1xkua_         154 YIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  230 (305)
T ss_dssp             EEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             ccccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc
Confidence            999999998877643   357899999999888644 45788899999999999999876 4567889999999999999


Q ss_pred             CCCCCccccCCCCCCEEeCCCCcccccchhhh
Q 009119          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEAC  273 (543)
Q Consensus       242 l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~  273 (543)
                      ++.+|.++..+++|++|++++|+++.++...+
T Consensus       231 L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         231 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             ccccccccccccCCCEEECCCCccCccChhhc
Confidence            99999999999999999999999988766544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.8e-23  Score=193.57  Aligned_cols=244  Identities=23%  Similarity=0.287  Sum_probs=134.3

Q ss_pred             cccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCC-CCcCCCCCcEEEcCCCCCCCC-CccccCCCCCCEEeCCC
Q 009119          185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHS  262 (543)
Q Consensus       185 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~  262 (543)
                      ..+.++-++..++.+|..+.  +.+++|++++|.++.++. .|..+++|+++++++|.+..+ |..+..+++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            45666667777777776543  567788888887777764 567777888888888777765 44677778888888887


Q ss_pred             CcccccchhhhcceecEEEccCCCCCCCChh-hcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCccccc
Q 009119          263 NQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA  341 (543)
Q Consensus       263 n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (543)
                      |+++.++... ...+..++..+|.+..++.. +........+....+......                           
T Consensus        89 n~l~~l~~~~-~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~---------------------------  140 (305)
T d1xkua_          89 NQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG---------------------------  140 (305)
T ss_dssp             SCCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---------------------------
T ss_pred             CccCcCccch-hhhhhhhhccccchhhhhhhhhhccccccccccccccccccC---------------------------
Confidence            7777665432 22456666666655554332 333444444444443221100                           


Q ss_pred             ccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHH
Q 009119          342 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA  421 (543)
Q Consensus       342 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~  421 (543)
                                                   .....+..+++|+.+++++|.+..+|..  .+++|+.|++++|.++.....
T Consensus       141 -----------------------------~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~  189 (305)
T d1xkua_         141 -----------------------------IENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAA  189 (305)
T ss_dssp             -----------------------------BCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTG
T ss_pred             -----------------------------CCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChh
Confidence                                         1112233345555555555555555432  234555555555555544444


Q ss_pred             HhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccC
Q 009119          422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA  490 (543)
Q Consensus       422 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l  490 (543)
                      .+.+++.++.|++++|.+.++....+.++++|++|++++|.++.+ +.++..+++|++|++++|+|+.+
T Consensus       190 ~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCC
T ss_pred             Hhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccccCCCEEECCCCccCcc
Confidence            455555555555555555554444444445555555555444433 22344444444444444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.8e-22  Score=180.10  Aligned_cols=194  Identities=28%  Similarity=0.340  Sum_probs=134.0

Q ss_pred             hhcCeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccch-HHhcCCCCCCEEEcCCCcCcccchhh
Q 009119            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAI   87 (543)
Q Consensus         9 ~~~~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~   87 (543)
                      +.+.++||++++++++|..++               +++++|+|++|.++.++ ..|.++++|++|++++|.++.++ .+
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp---------------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~   73 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP---------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VD   73 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC---------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CC
T ss_pred             CCCeEEEccCCCCCeeCcCcC---------------cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-cc
Confidence            345678999999999987773               45889999999998886 57888999999999999888775 35


Q ss_pred             hccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCccccc-ccccCCCCCCEEEccCCcCccCCcc-cccCCCccEE
Q 009119           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL  165 (543)
Q Consensus        88 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L  165 (543)
                      +.+++|++|++++|++...+..+..+++|+.|+++++.+..++ ..+..+.++++|++++|.+..++.. +..+++++.+
T Consensus        74 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhc
Confidence            6788888888888888877777778888888888888777654 3445566677777766666655433 3445666666


Q ss_pred             EecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCc
Q 009119          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR  218 (543)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  218 (543)
                      ++++|.++.+....+..+++|++|++++|.++.+|+.+..+++|+.|++++|.
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            66666665555554555555555555555555555444444445555554443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=2.7e-22  Score=186.28  Aligned_cols=242  Identities=25%  Similarity=0.350  Sum_probs=197.7

Q ss_pred             CccEEEcCccccc---cchHHhcCCCCCCEEEcCC-CcCc-ccchhhhccCCCCEEEcCCCCCCC-CChhhcccCCccEE
Q 009119           46 DLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKF  119 (543)
Q Consensus        46 ~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~l~-~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L  119 (543)
                      +++.|+|+++.+.   .+|..+.++++|++|+|++ |.+. .+|..|+++++|++|++++|.+.. .+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            5899999999887   5788999999999999986 6776 789999999999999999999885 45668889999999


Q ss_pred             ecCCCCcc-cccccccCCCCCCEEEccCCcCc-cCCcccccCCCc-cEEEecCCcccccchhhhcccccccEEECCCCcC
Q 009119          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM-SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (543)
Q Consensus       120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~~~L-~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~  196 (543)
                      ++++|.+. .+|..+.+++.++++++++|.+. .+|..+..+..+ +.+++++|.+.......+..+.. ..+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            99999877 67888999999999999999988 678888888776 88999999888666555655544 4688887766


Q ss_pred             -CcCchhccCCCcccEEEccCCccccCCCCCcCCCCCcEEEcCCCCCC-CCCccccCCCCCCEEeCCCCcccccchhhhc
Q 009119          197 -NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQ  274 (543)
Q Consensus       197 -~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~  274 (543)
                       ..++..+..+++++.++++++.+...+..+..+++++.|++++|.++ .+|.++.++++|++|++++|++++.      
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~------  283 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE------  283 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc------
Confidence             34666778888999999999988866667778889999999999988 7888899999999999988887631      


Q ss_pred             ceecEEEccCCCCCCCChhhcCCCCCceeecCCCCc
Q 009119          275 LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL  310 (543)
Q Consensus       275 ~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~  310 (543)
                                     +| .++++++|+.+++.+|+.
T Consensus       284 ---------------iP-~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         284 ---------------IP-QGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             ---------------CC-CSTTGGGSCGGGTCSSSE
T ss_pred             ---------------CC-CcccCCCCCHHHhCCCcc
Confidence                           22 235566777777777763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-21  Score=175.17  Aligned_cols=133  Identities=26%  Similarity=0.298  Sum_probs=112.6

Q ss_pred             cCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEc
Q 009119          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (543)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  458 (543)
                      +++|++|++++|.++.++..+..+++|+.|+++++.+..+....+..+.+++.|++++|.+..++...+..+++|+.+++
T Consensus        76 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l  155 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (266)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccc
Confidence            46778888888888777777788888888888888888877777788888888999888888888887888888999999


Q ss_pred             cCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccc
Q 009119          459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       459 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~  511 (543)
                      ++|.++...+..|..+++|++|++++|+++.+|..+..+++|+.|+|+||.+.
T Consensus       156 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            98888888777788889999999999998888888888888999999888765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=4.6e-22  Score=184.71  Aligned_cols=241  Identities=24%  Similarity=0.363  Sum_probs=206.1

Q ss_pred             hcCeeecCCCccc---ccchhhhhcccccCCCCccccccCccEEEcCc-cccc-cchHHhcCCCCCCEEEcCCCcCccc-
Q 009119           10 TSGSLNLSNRSLR---DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAH-NNIE-KLKEDLRNLPLLTVLNVSHNKLSEL-   83 (543)
Q Consensus        10 ~~~~l~l~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~l~~~-   83 (543)
                      .+++||++++++.   .+|..+..             +++|++|+|++ |.+. .+|..|.++++|++|++++|.+..+ 
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~-------------L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~  117 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLAN-------------LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGG-------------CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhc-------------Cccccccccccccccccccccccccccccchhhhccccccccc
Confidence            4788999999887   57777654             78999999997 6776 7999999999999999999999865 


Q ss_pred             chhhhccCCCCEEEcCCCCCC-CCChhhcccCCccEEecCCCCcc-cccccccCCCCC-CEEEccCCcCcc-CCcccccC
Q 009119           84 PAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNL-SDFKASNNCITS-LPEDLADC  159 (543)
Q Consensus        84 ~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L-~~L~l~~~~~~~-i~~~~~~~  159 (543)
                      +..+..+.+|+++++++|... .+|..+.++++++.+++++|.+. .+|..+..+..+ +.++++.+.+.. .+..+..+
T Consensus       118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence            557889999999999999866 67889999999999999999988 788888777765 889999999884 45555555


Q ss_pred             CCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccc-cCCCCCcCCCCCcEEEcC
Q 009119          160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMG  238 (543)
Q Consensus       160 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~  238 (543)
                      . ...+++..+.........+..++.++.+++.++.+...+..+..+++|+.|++++|++. .+|..+..+++|++|+++
T Consensus       198 ~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             c-ccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence            4 44799988877766666678889999999999999777777888999999999999999 789999999999999999


Q ss_pred             CCCCC-CCCccccCCCCCCEEeCCCCcc
Q 009119          239 NNALS-ALPAELGKLSKLGTLDLHSNQL  265 (543)
Q Consensus       239 ~~~l~-~l~~~l~~~~~L~~L~l~~n~l  265 (543)
                      +|.++ .+|+ +..+++|+.+++++|+.
T Consensus       277 ~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         277 FNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             SSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             CCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            99998 6774 57788999999999863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.86  E-value=4.2e-19  Score=167.87  Aligned_cols=307  Identities=24%  Similarity=0.284  Sum_probs=173.0

Q ss_pred             CCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCC
Q 009119          138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN  217 (543)
Q Consensus       138 ~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  217 (543)
                      ++++|+++++.++.+|+.   .++|++|++++|.++.++.    ...+|+.|++.+|.++.++..   .+.|++|++++|
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCccccc----chhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            566777777776666642   3456666666666665543    134556666666555544421   123555555555


Q ss_pred             ccccCCCCCcCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCC
Q 009119          218 RILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKM  297 (543)
Q Consensus       218 ~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~  297 (543)
                      .+..+|. +..+++|+.+++.++.+...+..   ...+                      ..+.+..+.... ...+..+
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l----------------------~~l~~~~~~~~~-~~~l~~l  161 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSL----------------------EFIAAGNNQLEE-LPELQNL  161 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTC----------------------CEEECCSSCCSS-CCCCTTC
T ss_pred             ccccccc-hhhhccceeeccccccccccccc---cccc----------------------cchhhccccccc-ccccccc
Confidence            5555443 33445555555555444433322   1233                      333333332222 1224455


Q ss_pred             CCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhh
Q 009119          298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW  377 (543)
Q Consensus       298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~  377 (543)
                      +.++.+.++++.........                                       .....+...+..+..++. ..
T Consensus       162 ~~l~~L~l~~n~~~~~~~~~---------------------------------------~~~~~l~~~~~~~~~~~~-~~  201 (353)
T d1jl5a_         162 PFLTAIYADNNSLKKLPDLP---------------------------------------LSLESIVAGNNILEELPE-LQ  201 (353)
T ss_dssp             TTCCEEECCSSCCSSCCCCC---------------------------------------TTCCEEECCSSCCSSCCC-CT
T ss_pred             ccceeccccccccccccccc---------------------------------------cccccccccccccccccc-cc
Confidence            66666666666554332111                                       111233333333333332 34


Q ss_pred             ccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEE
Q 009119          378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (543)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  457 (543)
                      .++.++.++++++....++.   ...++..+.+.++.+....    ....++...++..+.+..+...    .......+
T Consensus       202 ~l~~L~~l~l~~n~~~~~~~---~~~~l~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~l~~l----~~~~~~~~  270 (353)
T d1jl5a_         202 NLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLSEL----PPNLYYLN  270 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSEESCC----CTTCCEEE
T ss_pred             cccccccccccccccccccc---ccccccccccccccccccc----cccccccccccccccccccccc----cchhcccc
Confidence            46778888888877766653   3355677777777665543    2345666677666655443211    13445556


Q ss_pred             ccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCcCC
Q 009119          458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP  537 (543)
Q Consensus       458 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~  537 (543)
                      +..+.+...    ...+++|++|++++|+++.+|..   +++|+.|++++|+++.+|+.   +++|+.|++++|+++.+|
T Consensus       271 ~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         271 ASSNEIRSL----CDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             CCSSCCSEE----CCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC
T ss_pred             cccCccccc----cccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCCCCC
Confidence            665555432    24467888888888888888753   57888888888888888753   467888888888888887


Q ss_pred             CCcCC
Q 009119          538 PELVS  542 (543)
Q Consensus       538 ~~~~~  542 (543)
                      +...+
T Consensus       341 ~~~~~  345 (353)
T d1jl5a_         341 DIPES  345 (353)
T ss_dssp             CCCTT
T ss_pred             ccccc
Confidence            65543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.2e-21  Score=172.98  Aligned_cols=200  Identities=28%  Similarity=0.398  Sum_probs=143.7

Q ss_pred             ecEEEccCCCCCCCCh-hhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhc
Q 009119          277 LSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL  355 (543)
Q Consensus       277 L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (543)
                      +++|++++|.++.++. .+.++++|++++++++.+..+....+...                                  
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~----------------------------------   79 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL----------------------------------   79 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC----------------------------------
T ss_pred             CCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccc----------------------------------
Confidence            4444444444444432 36666777777777776665544333221                                  


Q ss_pred             ccccceeeeC-CCCCCCC-ChhhhccCCccEEEcCCCcCccCCh-hhccCCCCceeecccCcCCCCCHHHhhCCCCCCEE
Q 009119          356 SVTSKELSLE-GMNLSAI-PSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL  432 (543)
Q Consensus       356 ~~~l~~l~l~-~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L  432 (543)
                       ..+..+... .+.+..+ +..+..+++|++|++++|.+..++. .+..+++|+.+++++|.++.++...|..+++|++|
T Consensus        80 -~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L  158 (284)
T d1ozna_          80 -ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (284)
T ss_dssp             -TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             -ccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhc
Confidence             223333332 3334444 3345567888889998888877543 46677888889998888888888888888889999


Q ss_pred             EcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCch-hhhccCCCcEEeCCCCccc
Q 009119          433 KLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       433 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~  511 (543)
                      ++++|++..++..+|.++++|+.+++++|.+....+..|..+++|++|++++|.++.++. .+..+++|++|++++|.+.
T Consensus       159 ~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            999888888888888888899999999888888878888888889999999888887654 5667888899999888776

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.86  E-value=3e-19  Score=168.95  Aligned_cols=138  Identities=30%  Similarity=0.357  Sum_probs=76.1

Q ss_pred             cCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCC
Q 009119           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~  124 (543)
                      .++++|+|+++.++.+|+   ..++|++|++++|.++++|+.+   .+|+.|++++|.++.++..   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~---~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS---CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCC---CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            356777777777776664   2356777777777776666532   4566667776666655421   234666666666


Q ss_pred             CcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCC
Q 009119          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN  197 (543)
Q Consensus       125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~  197 (543)
                      .+..+|. +..+++|++|+++++.+...+..   ...+..+.+..+.......  +..++.++.+.+..+...
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~--l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred             ccccccc-hhhhccceeeccccccccccccc---cccccchhhcccccccccc--ccccccceeccccccccc
Confidence            6666653 45566666666666655544332   2334444444333222111  333444445555544443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.6e-21  Score=173.95  Aligned_cols=218  Identities=27%  Similarity=0.316  Sum_probs=158.2

Q ss_pred             EEEccCCccccCCCCCcCCCCCcEEEcCCCCCCCCCc-cccCCCCCCEEeCCCCcccccchhhhcc--eecEEEcc-CCC
Q 009119          211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLS-NNS  286 (543)
Q Consensus       211 ~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~--~L~~L~l~-~~~  286 (543)
                      .++.++..++.+|..+  .+.+++|++++|.++.+|. ++.++++|++|++++|.+..+....+..  .++.+... .+.
T Consensus        15 ~v~c~~~~L~~iP~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCC--CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            3444555555555443  2456666666666665553 4666777777777777766655554432  25555543 334


Q ss_pred             CCCC-ChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCcccccccchhhHHHhhhhcccccceeeeC
Q 009119          287 LSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE  365 (543)
Q Consensus       287 i~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~  365 (543)
                      +..+ +..+.++++|++|+++.|.+..+..                                                  
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~--------------------------------------------------  122 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGP--------------------------------------------------  122 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCT--------------------------------------------------
T ss_pred             cccccchhhcccccCCEEecCCcccccccc--------------------------------------------------
Confidence            5554 4457778888888888876643321                                                  


Q ss_pred             CCCCCCCChhhhccCCccEEEcCCCcCccCC-hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCC
Q 009119          366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS  444 (543)
Q Consensus       366 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~  444 (543)
                              ..+...++|+.+++++|.++.++ ..+..+++|+.|++++|+++.+....|.++++|+++++++|+++++..
T Consensus       123 --------~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~  194 (284)
T d1ozna_         123 --------GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP  194 (284)
T ss_dssp             --------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             --------cccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccCh
Confidence                    12233567888999998888875 457788889999999999988888888899999999999999998888


Q ss_pred             CccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119          445 DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (543)
Q Consensus       445 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  488 (543)
                      ..|..+++|++|++++|.+....+..|..+++|++|++++|.+.
T Consensus       195 ~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            88999999999999999998887778888999999999998877

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.2e-22  Score=194.04  Aligned_cols=106  Identities=19%  Similarity=0.251  Sum_probs=73.3

Q ss_pred             cCccEEEcCcccccc--chHHhcCCCCCCEEEcCCCcCc-----ccchhhhccCCCCEEEcCCCCCCC-----CChhhc-
Q 009119           45 VDLQKLILAHNNIEK--LKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMK-----IPDEIG-  111 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~-  111 (543)
                      .+|++|+++++.+..  +...++.++++++|+|++|.++     .++.++..+++|++|+|++|.++.     +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            368899999998884  3456778888899999999877     335567788888888888887752     122222 


Q ss_pred             ccCCccEEecCCCCccc-----ccccccCCCCCCEEEccCCcCc
Q 009119          112 SATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCIT  150 (543)
Q Consensus       112 ~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~  150 (543)
                      ...+|++|++++|+++.     ++..+..+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23467778887777763     2344556666777777666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.3e-21  Score=190.79  Aligned_cols=105  Identities=20%  Similarity=0.231  Sum_probs=53.6

Q ss_pred             CCCEEEcCCCCCCC--CChhhcccCCccEEecCCCCcc-----cccccccCCCCCCEEEccCCcCcc-----CCccccc-
Q 009119           92 MLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITS-----LPEDLAD-  158 (543)
Q Consensus        92 ~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----i~~~~~~-  158 (543)
                      +|+.|++++++++.  +...+..++++++|++++|+++     .++..+..+++|++|++++|.++.     +...+.. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            46677777776662  2334555666777777777665     223444556666666666665541     1122221 


Q ss_pred             CCCccEEEecCCcccccch----hhhcccccccEEECCCCcC
Q 009119          159 CSKMSKLDVEGNKLTVLSN----NLIASWTMLTELIASKNLL  196 (543)
Q Consensus       159 ~~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~  196 (543)
                      ..+|++|++++|.++....    .++..+++|++|++++|.+
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            2345555555555543322    1123334444444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.4e-18  Score=152.61  Aligned_cols=203  Identities=21%  Similarity=0.304  Sum_probs=150.4

Q ss_pred             EeCCCCcccccchhhhcceecEEEccCCCCCCCChhhcCCCCCceeecCCCCcCcccccccCCCcHHHHHHHhccCCCCc
Q 009119          258 LDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE  337 (543)
Q Consensus       258 L~l~~n~l~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (543)
                      ++++.+.+.+........+|++|++.+|.++.++ .+.++++|++|++++|.+..+.                       
T Consensus        24 ~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-----------------------   79 (227)
T d1h6ua2          24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-----------------------   79 (227)
T ss_dssp             HHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-----------------------
T ss_pred             HHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-----------------------
Confidence            3445555554433333344677777777776663 4777788888888777654321                       


Q ss_pred             ccccccchhhHHHhhhhcccccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCC
Q 009119          338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD  417 (543)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~  417 (543)
                                                           .+..+++++.+++++|.++.++ .+..+++|+.++++++...+
T Consensus        80 -------------------------------------~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~~  121 (227)
T d1h6ua2          80 -------------------------------------PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITD  121 (227)
T ss_dssp             -------------------------------------GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCC
T ss_pred             -------------------------------------cccccccccccccccccccccc-cccccccccccccccccccc
Confidence                                                 2445678888888888888776 46788888888888887766


Q ss_pred             CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhcc
Q 009119          418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRL  497 (543)
Q Consensus       418 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~  497 (543)
                      ...  +...+.+..+.++++.+....  .+..+++|++|++++|.+....  .+..+++|++|++++|+++.++. +..+
T Consensus       122 ~~~--~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~-l~~l  194 (227)
T d1h6ua2         122 VTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP-LASL  194 (227)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred             cch--hccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCChh-hcCC
Confidence            544  567888888998888776543  3677888999999988876543  37788999999999999988754 7788


Q ss_pred             CCCcEEeCCCCccccccccccCCCCCCeEeCCC
Q 009119          498 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD  530 (543)
Q Consensus       498 ~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~  530 (543)
                      ++|++|++++|+++.++ .+.++++|+.|++++
T Consensus       195 ~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         195 PNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             CCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            99999999999999886 488999999999864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=7.3e-19  Score=154.37  Aligned_cols=186  Identities=23%  Similarity=0.313  Sum_probs=97.3

Q ss_pred             CCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccC
Q 009119           67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN  146 (543)
Q Consensus        67 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  146 (543)
                      +.+|+.|++.+|.+.++ +.+..+++|++|++++|.+..++ .+..+++++.+++++|.++.++ .+.++++|+.+++++
T Consensus        40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence            34445555555544444 23444555555555555444432 2444555555555555544442 344455555555555


Q ss_pred             CcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhccCCCcccEEEccCCccccCCCCC
Q 009119          147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI  226 (543)
Q Consensus       147 ~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  226 (543)
                      +....+. .+...+.++.+.++++.+.....  +..+++|+++++.++.+...+. +..+++|+.|++++|++..++ .+
T Consensus       117 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~-~l  191 (227)
T d1h6ua2         117 TQITDVT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS-PL  191 (227)
T ss_dssp             SCCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             ccccccc-hhccccchhhhhchhhhhchhhh--hccccccccccccccccccchh-hcccccceecccCCCccCCCh-hh
Confidence            5444332 23444555555555554443322  4455556666666655544432 455666666666666665553 25


Q ss_pred             cCCCCCcEEEcCCCCCCCCCccccCCCCCCEEeCC
Q 009119          227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH  261 (543)
Q Consensus       227 ~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~  261 (543)
                      ..+++|++|++++|.++.++. +..+++|+.|+++
T Consensus       192 ~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             cCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            556666666666666665543 5666666666664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.1e-17  Score=144.34  Aligned_cols=164  Identities=26%  Similarity=0.377  Sum_probs=134.1

Q ss_pred             cccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCC
Q 009119          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (543)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~  436 (543)
                      .+++.++++++.++.++ .+..+++|++|++++|.+++++. +..+++|+.|++++|+++++.  .+.++++|+.|++++
T Consensus        46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTT
T ss_pred             cCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc--ccccccccccccccc
Confidence            46788899998888775 36778899999999998888774 678889999999999888765  368889999999999


Q ss_pred             CCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccccccc
Q 009119          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG  516 (543)
Q Consensus       437 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~  516 (543)
                      |.+..+.  .+..++.++.+++++|.+...  ..+..+++|+++++++|+++.++ .+..+++|++|++++|+++.++ .
T Consensus       122 ~~~~~~~--~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~~l~-~  195 (210)
T d1h6ta2         122 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLR-A  195 (210)
T ss_dssp             SCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCG-G
T ss_pred             ccccccc--ccccccccccccccccccccc--ccccccccccccccccccccccc-cccCCCCCCEEECCCCCCCCCh-h
Confidence            8877654  477888999999998887654  34667889999999999888775 3778899999999999988886 5


Q ss_pred             ccCCCCCCeEeCCC
Q 009119          517 FKNLTSLTELDLSD  530 (543)
Q Consensus       517 l~~~~~L~~L~l~~  530 (543)
                      +..+++|+.|+|++
T Consensus       196 l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         196 LAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCSEEEEEE
T ss_pred             hcCCCCCCEEEccC
Confidence            88889999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.3e-17  Score=141.09  Aligned_cols=159  Identities=23%  Similarity=0.339  Sum_probs=86.6

Q ss_pred             ccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCC
Q 009119           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~  123 (543)
                      ++++++|+++++.+..++ .++.+++|++|++++|.++.++. ++++++|++|++++|.+..++ .+.++++|+.|++++
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCS
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-ccccccccccccccc
Confidence            345666666666666552 35566666666666666665543 566666666666666655554 355566666666666


Q ss_pred             CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhc
Q 009119          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (543)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (543)
                      +....++ .+.++++|+.|++++|.+..++ .+..+++|+.|++.+|.+..+..  ++++++|++|++++|+++.++ .+
T Consensus       116 ~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~-~l  190 (199)
T d2omxa2         116 NQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS-VL  190 (199)
T ss_dssp             SCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             ccccccc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCCc-cc
Confidence            5555442 3445555666666655555443 34555555555555555544432  444445555555555444443 23


Q ss_pred             cCCCccc
Q 009119          204 GSLSRLI  210 (543)
Q Consensus       204 ~~~~~L~  210 (543)
                      ..+++|+
T Consensus       191 ~~L~~L~  197 (199)
T d2omxa2         191 AKLTNLE  197 (199)
T ss_dssp             GGCTTCS
T ss_pred             cCCCCCC
Confidence            3344443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.9e-17  Score=141.55  Aligned_cols=151  Identities=24%  Similarity=0.384  Sum_probs=105.6

Q ss_pred             ccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEE
Q 009119          378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (543)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  457 (543)
                      .++++++|+++++.+++++ .+..+++|++|++++|+++++.+  +.++++|++|++++|.+..++  .+.+++.|+.++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--cccccccccccc
Confidence            3566777777777777764 35667777777777777776654  667777777777777766654  266777777777


Q ss_pred             ccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcCCcCC
Q 009119          458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP  537 (543)
Q Consensus       458 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~  537 (543)
                      +++|......  .+..+++|+.|++++|++..++ .+..+++|+.|++++|+++.++ .+..+++|+.|++++|+++++|
T Consensus       113 l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         113 LFNNQITDID--PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccccc--ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc
Confidence            7777665532  3566777777777777777654 4666777777777777777764 3677777777777777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.8e-17  Score=141.78  Aligned_cols=163  Identities=23%  Similarity=0.350  Sum_probs=99.8

Q ss_pred             cCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCC
Q 009119           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (543)
Q Consensus        45 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~  124 (543)
                      .+|++|+++++.++.++ .++.+++|++|++++|.++.++ .++.+++|++|++++|+++.++ .+..+++|+.|+++++
T Consensus        46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTS
T ss_pred             cCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-cccccccccccccccc
Confidence            45677777777666654 3566777777777777666654 3556667777777766666654 4566666777777666


Q ss_pred             CcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchhhhcccccccEEECCCCcCCcCchhcc
Q 009119          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG  204 (543)
Q Consensus       125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (543)
                      .+..++ .+.++++++.++++++.+...+ .+..+++|+++++++|.+..+..  +..+++|++|++++|.++.++ .+.
T Consensus       123 ~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~-~l~  197 (210)
T d1h6ta2         123 GISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALA  197 (210)
T ss_dssp             CCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGT
T ss_pred             cccccc-cccccccccccccccccccccc-ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh-hhc
Confidence            665543 4556666666666666665442 34556666666666666655432  555566666666666555554 355


Q ss_pred             CCCcccEEEcc
Q 009119          205 SLSRLIRLDLH  215 (543)
Q Consensus       205 ~~~~L~~L~l~  215 (543)
                      .+++|+.|+++
T Consensus       198 ~l~~L~~L~Ls  208 (210)
T d1h6ta2         198 GLKNLDVLELF  208 (210)
T ss_dssp             TCTTCSEEEEE
T ss_pred             CCCCCCEEEcc
Confidence            55556665554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=1.9e-17  Score=140.71  Aligned_cols=178  Identities=20%  Similarity=0.219  Sum_probs=145.0

Q ss_pred             ccceeeeCCCCCCCCChhhhccCCccEEEcCCCcCcc-C-ChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcC
Q 009119          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-L-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (543)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-l-~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~  435 (543)
                      ..+++++++++++.+|..+  .+++++|++++|.++. + +..|..+++|+.|++++|.+..+....+..+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            4568899999999999876  3689999999999976 4 3457889999999999999999999999999999999999


Q ss_pred             CCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCceeecCCCccccCchhhhccCCCcEEeCCCCcccc-cc
Q 009119          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS-IP  514 (543)
Q Consensus       436 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~-l~  514 (543)
                      +|++..++..+|.++++|++|++++|.++.+.+.+|..+++|++|++++|.+........-...++.+.+..+.++. .|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            99999999999999999999999999999988889999999999999999887443222222345666777777663 35


Q ss_pred             ccccCCCCCCeEeCCCCcCCcCCCCc
Q 009119          515 EGFKNLTSLTELDLSDNNISALPPEL  540 (543)
Q Consensus       515 ~~l~~~~~L~~L~l~~~~~~~~~~~~  540 (543)
                      .   .+..++.++|+.+.+.-.+++.
T Consensus       167 ~---~l~~~~l~~L~~n~l~C~~~~~  189 (192)
T d1w8aa_         167 S---KVRDVQIKDLPHSEFKCSSENS  189 (192)
T ss_dssp             T---TTTTSBGGGSCTTTCCCCCC--
T ss_pred             h---hhcCCEeeecCHhhCcCCCCCC
Confidence            4   4456777888888887655543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.4e-17  Score=144.04  Aligned_cols=212  Identities=15%  Similarity=0.234  Sum_probs=118.7

Q ss_pred             CeeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchH-HhcCCCCCCEEEcCCCcCcc-cc-hhhh
Q 009119           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSE-LP-AAIG   88 (543)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~-~~-~~~~   88 (543)
                      +.++|++.+++++|..++               +++++|++++|.++.++. +|.++++|++|++++|.+.. ++ .+|.
T Consensus        11 ~~i~c~~~~l~~iP~~l~---------------~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~   75 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS   75 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---------------SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE
T ss_pred             CEEEEeCCCCCCcCCCCC---------------CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc
Confidence            567888888888887764               347888888888887764 67888888888888887664 32 3667


Q ss_pred             ccCCCCEEEcCC-CCCCCC-ChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEE
Q 009119           89 ELHMLKSLDVSF-NSIMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD  166 (543)
Q Consensus        89 ~~~~L~~L~l~~-~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~  166 (543)
                      .+++++++.+.. +.+... +..+.++++|++++++++.+...+. +..+                    ..+..+..+.
T Consensus        76 ~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~--------------------~~l~~l~~~~  134 (242)
T d1xwdc1          76 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKI--------------------HSLQKVLLDI  134 (242)
T ss_dssp             SCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC-CTTT--------------------CBSSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhccccc-cccc--------------------cccccccccc
Confidence            777777777654 344433 3456667777777777776664432 1111                    1222233333


Q ss_pred             ecCCcccccchhhhcccc-cccEEECCCCcCCcCchhccCCCcccEEE-ccCCccccCCC-CCcCCCCCcEEEcCCCCCC
Q 009119          167 VEGNKLTVLSNNLIASWT-MLTELIASKNLLNGMPETIGSLSRLIRLD-LHQNRILSIPS-SISGCCSLAEFYMGNNALS  243 (543)
Q Consensus       167 l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~-~~~~~~~L~~l~l~~~~l~  243 (543)
                      ..++.+..+....+.+++ .++.+++.++.++.++.......+++.+. +.++.++.+|. .|..+++|+.|++++|.++
T Consensus       135 ~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             ESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            333333333333333332 34455555555544444333334443332 34445555543 2455566666666666666


Q ss_pred             CCCc-cccCCCCCCEEe
Q 009119          244 ALPA-ELGKLSKLGTLD  259 (543)
Q Consensus       244 ~l~~-~l~~~~~L~~L~  259 (543)
                      .+|. .+.++++|+.++
T Consensus       215 ~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         215 SLPSYGLENLKKLRARS  231 (242)
T ss_dssp             CCCSSSCTTCCEEESSS
T ss_pred             ccCHHHHcCCcccccCc
Confidence            5543 234444444333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.6e-16  Score=140.93  Aligned_cols=209  Identities=19%  Similarity=0.215  Sum_probs=130.0

Q ss_pred             cEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccch-hhhccCCCCEEEcCCCCCCC-C-ChhhcccCCccEEecCC-
Q 009119           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMK-I-PDEIGSATALVKFDCSS-  123 (543)
Q Consensus        48 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~-l-~~~~~~~~~L~~L~l~~-  123 (543)
                      +.+++++..++++|..+.  ++++.|++++|.+..++. +|.++++|++|++++|.+.. + +.++..+++++.+.+.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            567777776777765443  467777777777776654 56667777777777666553 2 23455566666665543 


Q ss_pred             CCcccccccccCCCCCCEEEccCCcCccCCcccccCCCccEEEecCCcccccchh-hhcccccccEEECCCCcCCcCch-
Q 009119          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELIASKNLLNGMPE-  201 (543)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-  201 (543)
                      +.+..++                      +..+..+++|+.++++++.+...... .+..+..+..+...++.+..++. 
T Consensus        89 n~l~~~~----------------------~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~  146 (242)
T d1xwdc1          89 NNLLYIN----------------------PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN  146 (242)
T ss_dssp             TTCCEEC----------------------TTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTT
T ss_pred             ccccccc----------------------cccccccccccccccchhhhccccccccccccccccccccccccccccccc
Confidence            2333222                      22344444555555555444433221 12233445555556666665543 


Q ss_pred             hccCC-CcccEEEccCCccccCCCCCcCCCCCcEEE-cCCCCCCCCCc-cccCCCCCCEEeCCCCcccccchhhhcceec
Q 009119          202 TIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFY-MGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLS  278 (543)
Q Consensus       202 ~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~-l~~~~l~~l~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~L~  278 (543)
                      .+..+ ..++.+++.++.+..++......++++++. +.+|.++.+|. .+.++++|++|++++|.++.++...+. .+.
T Consensus       147 ~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~l~  225 (242)
T d1xwdc1         147 SFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE-NLK  225 (242)
T ss_dssp             SSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT-TCC
T ss_pred             ccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHc-CCc
Confidence            33443 478999999999998877666677776665 57778998876 578999999999999999988765432 344


Q ss_pred             EEE
Q 009119          279 VLD  281 (543)
Q Consensus       279 ~L~  281 (543)
                      .|.
T Consensus       226 ~L~  228 (242)
T d1xwdc1         226 KLR  228 (242)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=5.3e-17  Score=137.91  Aligned_cols=159  Identities=22%  Similarity=0.264  Sum_probs=128.3

Q ss_pred             CccEEEcCCCcCccCChhhccCCCCceeecccCcCCC-CCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEcc
Q 009119          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (543)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  459 (543)
                      ..+.++.++++++.+|..+.  +++++|++++|+|+. .....|.++++|++|++++|.+..+....|..+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            34678999999999997653  689999999999975 667778999999999999999999998999999999999999


Q ss_pred             CCcCCCCCCCCCCCCCcCceeecCCCccccCchh-hhccCCCcEEeCCCCccccccccccCCCCCCeEeCCCCcCC-cCC
Q 009119          460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS-ALP  537 (543)
Q Consensus       460 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~-~~~  537 (543)
                      +|.+..+.+.+|.++++|++|+|++|+++.++.. +..+++|++|+|++|.+........-...++.+.+..+.+. ..|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            9999998888999999999999999999988655 67899999999999988744221111122444555555554 444


Q ss_pred             CCcC
Q 009119          538 PELV  541 (543)
Q Consensus       538 ~~~~  541 (543)
                      ..+.
T Consensus       167 ~~l~  170 (192)
T d1w8aa_         167 SKVR  170 (192)
T ss_dssp             TTTT
T ss_pred             hhhc
Confidence            4443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.2e-16  Score=126.37  Aligned_cols=126  Identities=21%  Similarity=0.243  Sum_probs=83.8

Q ss_pred             hccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCc
Q 009119          399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ  478 (543)
Q Consensus       399 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~  478 (543)
                      +.++.++++|++++|+|+.+.. .+..+++|++|++++|++.++.  .|..+++|++|++++|.+....+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccc
Confidence            3455566777777777666642 3456677777777777776653  366677777777777776665444455677777


Q ss_pred             eeecCCCccccCch--hhhccCCCcEEeCCCCccccccc----cccCCCCCCeEe
Q 009119          479 ELYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSIPE----GFKNLTSLTELD  527 (543)
Q Consensus       479 ~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~l~~----~l~~~~~L~~L~  527 (543)
                      +|++++|+++.++.  .+..+++|++|++++|.+...|.    .+..+|+|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77777777776543  45667777788887777776643    466777887776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=137.37  Aligned_cols=133  Identities=26%  Similarity=0.281  Sum_probs=61.5

Q ss_pred             hhccCCccEEEcCCCc-Ccc--CChhhccCCCCceeecccC-cCCCCCH--HHhhCCCCCCEEEcCCCC--CcccCCCc-
Q 009119          376 IWEAGEITKLDLSRNS-IQE--LPPELSSCASLQTLILSRN-KIKDWPD--AILTSLSSLSCLKLDNNP--LRQVPSDG-  446 (543)
Q Consensus       376 ~~~~~~L~~L~l~~~~-l~~--l~~~~~~~~~L~~L~l~~~-~i~~~~~--~~l~~~~~L~~L~L~~n~--l~~~~~~~-  446 (543)
                      +..+++|++|++++|. +++  +......+++|++|++++| .+++...  .....+++|++|+++++.  +++..... 
T Consensus        91 l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l  170 (284)
T d2astb2          91 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL  170 (284)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred             HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccc
Confidence            3344555555555542 332  2222344555666666554 3332111  111224556666665542  22211111 


Q ss_pred             cCCCCCccEEEccCCc-CCCCCCCCCCCCCcCceeecCCC-ccc-cCchhhhccCCCcEEeCCCC
Q 009119          447 FKDIPMLQILDLSYNI-ASLPENPPFSSLPHLQELYLRRM-QLR-EAPTDILRLQQLRILDLSQN  508 (543)
Q Consensus       447 ~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~-~l~-~l~~~~~~~~~L~~L~l~~~  508 (543)
                      ...+++|++|++++|. +++.....+..+++|++|++++| .++ .....+.++++|+.|++++|
T Consensus       171 ~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            2345566666665542 33333344455566666666665 444 12233455666666666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-15  Score=125.09  Aligned_cols=126  Identities=23%  Similarity=0.266  Sum_probs=105.2

Q ss_pred             ccCCccEEEcCCCcCccCChhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEE
Q 009119          378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (543)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  457 (543)
                      ...++++|++++|.++.++..+..+++|+.|++++|.|+++..  +..+++|++|++++|++++++...+..+++|++|+
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCccccccccccccce
Confidence            4567889999999999888766778899999999999887743  68889999999999999988877677889999999


Q ss_pred             ccCCcCCCCCC-CCCCCCCcCceeecCCCccccCch----hhhccCCCcEEeC
Q 009119          458 LSYNIASLPEN-PPFSSLPHLQELYLRRMQLREAPT----DILRLQQLRILDL  505 (543)
Q Consensus       458 l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~l~~l~~----~~~~~~~L~~L~l  505 (543)
                      +++|.+..... ..+..+++|++|++++|.++..+.    .+..+++|+.||-
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            99998877533 457888999999999999987764    4677999999883

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.7e-14  Score=111.75  Aligned_cols=100  Identities=24%  Similarity=0.453  Sum_probs=46.3

Q ss_pred             EEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCcccccccccCCCCCCEEEccCCcCcc
Q 009119           72 VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS  151 (543)
Q Consensus        72 ~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  151 (543)
                      .|++++|.++.++ .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++ .+..+++|++|++++|.+..
T Consensus         2 ~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             EEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred             EEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCC
Confidence            3444444444443 244444444444444444444444444444444444444444443 24444444444444444443


Q ss_pred             CC--cccccCCCccEEEecCCccc
Q 009119          152 LP--EDLADCSKMSKLDVEGNKLT  173 (543)
Q Consensus       152 i~--~~~~~~~~L~~L~l~~~~i~  173 (543)
                      ++  ..+..+++|+.+++++|.+.
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCchhhcCCCCCCEEECCCCcCC
Confidence            32  23444555555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1e-14  Score=112.98  Aligned_cols=100  Identities=25%  Similarity=0.331  Sum_probs=56.2

Q ss_pred             eeecCCCcccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCC
Q 009119           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM   92 (543)
Q Consensus        13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~   92 (543)
                      .||++++++++++. + ..            ++.|++|++++|.++.+|+.|..+++|+.|++++|.++.++ .+..+++
T Consensus         2 ~L~Ls~n~l~~l~~-l-~~------------l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~   66 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-L-EQ------------LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPR   66 (124)
T ss_dssp             EEECTTSCCSSCCC-G-GG------------GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSS
T ss_pred             EEEcCCCCCCCCcc-c-cc------------CCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccc
Confidence            45666666665542 2 22            44566666666666666555566666666666666665553 3555566


Q ss_pred             CCEEEcCCCCCCCCC--hhhcccCCccEEecCCCCcc
Q 009119           93 LKSLDVSFNSIMKIP--DEIGSATALVKFDCSSNQLK  127 (543)
Q Consensus        93 L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~  127 (543)
                      |++|++++|++..++  ..+..+++|++|++++|.+.
T Consensus        67 L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            666666666555443  23455555555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.1e-15  Score=133.80  Aligned_cols=122  Identities=16%  Similarity=0.249  Sum_probs=66.9

Q ss_pred             CeeecCCCccc-ccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCc--ccchhhh
Q 009119           12 GSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIG   88 (543)
Q Consensus        12 ~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~--~~~~~~~   88 (543)
                      +++|++++.+. ++...+..              ..+..+.++...+............|++|++++|.+.  .+...+.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--------------~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~   68 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--------------QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS   68 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--------------TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred             CEEECCCCCCCchHHHHHHh--------------ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHH
Confidence            46788877654 22222222              1244555555444432223334456777777776655  2344556


Q ss_pred             ccCCCCEEEcCCCCCC-CCChhhcccCCccEEecCCC-Cccc--ccccccCCCCCCEEEccCC
Q 009119           89 ELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLKE--LPSSLGRCLNLSDFKASNN  147 (543)
Q Consensus        89 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~  147 (543)
                      .+++|++|+++++.+. ..+..+..+++|++|++++| .+++  +.....++++|++|++++|
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            6777777777777655 33445666677777777664 3432  2222345566666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.55  E-value=3.5e-15  Score=139.59  Aligned_cols=223  Identities=17%  Similarity=0.171  Sum_probs=131.4

Q ss_pred             ccCccEEEcCccccc-----cchHHhcCCCCCCEEEcCCCcCcc-----------cchhhhccCCCCEEEcCCCCCCC--
Q 009119           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----------LPAAIGELHMLKSLDVSFNSIMK--  105 (543)
Q Consensus        44 ~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~~-----------~~~~~~~~~~L~~L~l~~~~~~~--  105 (543)
                      ...++.|+|++|.+.     .+...+..+++|+.++++++....           +..++..+++|++|++++|.+..  
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            566777888777664     344556677778888877664331           22345567778888888777663  


Q ss_pred             ---CChhhcccCCccEEecCCCCccc-----ccc---------cccCCCCCCEEEccCCcCc-----cCCcccccCCCcc
Q 009119          106 ---IPDEIGSATALVKFDCSSNQLKE-----LPS---------SLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMS  163 (543)
Q Consensus       106 ---l~~~~~~~~~L~~L~l~~~~~~~-----~~~---------~~~~~~~L~~L~l~~~~~~-----~i~~~~~~~~~L~  163 (543)
                         +...+..+++|++|++++|.+..     +..         .....+.|+.+.++++.+.     .+...+..++.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               23345567778888888776641     111         1235667888888888765     2344466778888


Q ss_pred             EEEecCCcccccc-----hhhhcccccccEEECCCCcCCc-----CchhccCCCcccEEEccCCcccc-----CCCCCc-
Q 009119          164 KLDVEGNKLTVLS-----NNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS-----IPSSIS-  227 (543)
Q Consensus       164 ~L~l~~~~i~~~~-----~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~-  227 (543)
                      .+++++|.+....     ...+...++|+.|++++|.+..     +...+..+++|++|++++|.+..     +...+. 
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~  269 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  269 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhh
Confidence            8888888776421     2234556667777777776532     33445566677777777766551     111111 


Q ss_pred             -CCCCCcEEEcCCCCCCC-----CCcccc-CCCCCCEEeCCCCccc
Q 009119          228 -GCCSLAEFYMGNNALSA-----LPAELG-KLSKLGTLDLHSNQLK  266 (543)
Q Consensus       228 -~~~~L~~l~l~~~~l~~-----l~~~l~-~~~~L~~L~l~~n~l~  266 (543)
                       ..+.|++|++++|.++.     +...+. +.++|+.|++++|.+.
T Consensus       270 ~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence             12445555555555441     222222 3455555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=6.7e-15  Score=137.64  Aligned_cols=237  Identities=20%  Similarity=0.177  Sum_probs=130.0

Q ss_pred             cccchHHhcCCCCCCEEEcCCCcCc-----ccchhhhccCCCCEEEcCCCCCCCC-----------ChhhcccCCccEEe
Q 009119           57 IEKLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMKI-----------PDEIGSATALVKFD  120 (543)
Q Consensus        57 ~~~l~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~l-----------~~~~~~~~~L~~L~  120 (543)
                      +..+...+.....++.|+|++|.+.     .+..++...++|+.++++++.....           ...+..+++|+.|+
T Consensus        20 ~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          20 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence            3355567888899999999998775     2344567778899999887754422           22345567777777


Q ss_pred             cCCCCccc-----ccccccCCCCCCEEEccCCcCcc-----CCcc---------cccCCCccEEEecCCcccccchhhhc
Q 009119          121 CSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPED---------LADCSKMSKLDVEGNKLTVLSNNLIA  181 (543)
Q Consensus       121 l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----i~~~---------~~~~~~L~~L~l~~~~i~~~~~~~~~  181 (543)
                      +++|.+..     +...+..+++|++|++++|.+..     +...         ....+.|+.+.++++.+..-....  
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~--  177 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE--  177 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH--
T ss_pred             ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc--
Confidence            77776652     23344556677777777665541     1111         122345555555555443222111  


Q ss_pred             ccccccEEECCCCcCCcCchhccCCCcccEEEccCCcccc------CCCCCcCCCCCcEEEcCCCCCC-----CCCcccc
Q 009119          182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS------IPSSISGCCSLAEFYMGNNALS-----ALPAELG  250 (543)
Q Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~l~l~~~~l~-----~l~~~l~  250 (543)
                                       +...+..++.|+.|++++|.+..      +...+..+++|+.|++++|.++     .+...+.
T Consensus       178 -----------------l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~  240 (344)
T d2ca6a1         178 -----------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK  240 (344)
T ss_dssp             -----------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred             -----------------ccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccc
Confidence                             12223334445555555544431      1223444555555555555544     1233445


Q ss_pred             CCCCCCEEeCCCCcccccchhhh--------cceecEEEccCCCCCC-----CChhh-cCCCCCceeecCCCCcCc
Q 009119          251 KLSKLGTLDLHSNQLKEYCVEAC--------QLRLSVLDLSNNSLSG-----LPPEI-GKMTTLRKLLLTGNPLRT  312 (543)
Q Consensus       251 ~~~~L~~L~l~~n~l~~~~~~~~--------~~~L~~L~l~~~~i~~-----~~~~l-~~~~~L~~L~l~~~~~~~  312 (543)
                      .+++|++|++++|.+++......        ...+++|++++|.+..     +...+ .++++|++|++++|.+..
T Consensus       241 ~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            55666666666666553211111        1236666666666544     22333 256788889998887743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=4.3e-15  Score=125.90  Aligned_cols=129  Identities=29%  Similarity=0.327  Sum_probs=94.4

Q ss_pred             ccCccEEEcCcc--ccccchHHhcCCCCCCEEEcCCCcCcccchhhhccCCCCEEEcCCCCCCCCChhhcccCCccEEec
Q 009119           44 AVDLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (543)
Q Consensus        44 ~~~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l  121 (543)
                      ....+.+++++.  .++.++..+..+++|++|++++|.+..++ .+..+++|++|++++|.++.++.....+++|+.|++
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEEC
T ss_pred             ccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccc
Confidence            344566677664  36677777888888888888888888774 577888888888888888877766666677888888


Q ss_pred             CCCCcccccccccCCCCCCEEEccCCcCccCC--cccccCCCccEEEecCCcccc
Q 009119          122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTV  174 (543)
Q Consensus       122 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~--~~~~~~~~L~~L~l~~~~i~~  174 (543)
                      ++|.++.++ .+..+++|++|++++|.++.++  ..+..+++|+.|++++|++..
T Consensus       101 ~~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         101 SYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            888877663 4666777888888877777654  346777777777777776553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=1.2e-14  Score=123.18  Aligned_cols=140  Identities=20%  Similarity=0.270  Sum_probs=111.8

Q ss_pred             CeeecCCC--cccccchhhhhcccccCCCCccccccCccEEEcCccccccchHHhcCCCCCCEEEcCCCcCcccchhhhc
Q 009119           12 GSLNLSNR--SLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE   89 (543)
Q Consensus        12 ~~l~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~   89 (543)
                      +.+++++.  .++.+|..+..             +++|++|+|++|.++.++ .+..+++|+.|++++|.+.+++..+..
T Consensus        26 ~~~~l~~~~~~i~~l~~sl~~-------------L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~   91 (198)
T d1m9la_          26 EKVELHGMIPPIEKMDATLST-------------LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAV   91 (198)
T ss_dssp             SCEECCBCCTTCCCCHHHHHH-------------TTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHH
T ss_pred             ceeeeecccCchhhhhhHHhc-------------ccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccc
Confidence            44555553  35555555433             788999999999999985 588999999999999999999877777


Q ss_pred             cCCCCEEEcCCCCCCCCChhhcccCCccEEecCCCCccccc--ccccCCCCCCEEEccCCcCccCCcc-----------c
Q 009119           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPED-----------L  156 (543)
Q Consensus        90 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~i~~~-----------~  156 (543)
                      +++|++|++++|.++.++ .+..+++|++|++++|+++.++  ..+..+++|++|++++|++...+..           +
T Consensus        92 ~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi  170 (198)
T d1m9la_          92 ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHH
T ss_pred             cccccccccccccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHH
Confidence            789999999999998874 5788999999999999999776  4688999999999999987633211           4


Q ss_pred             ccCCCccEEE
Q 009119          157 ADCSKMSKLD  166 (543)
Q Consensus       157 ~~~~~L~~L~  166 (543)
                      ..+++|+.||
T Consensus       171 ~~lp~L~~LD  180 (198)
T d1m9la_         171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCCEES
T ss_pred             HHCCCcCEeC
Confidence            4566777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5e-12  Score=102.05  Aligned_cols=107  Identities=25%  Similarity=0.287  Sum_probs=78.7

Q ss_pred             CccEEEcCCCcCccCChhhccCCCCceeecccC-cCCCCCHHHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEcc
Q 009119          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (543)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  459 (543)
                      ..+.++.+++.+.++|..+..+++|++|++.++ .++.+....|.++++|+.|++++|+++.+...+|..+++|++|+++
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            445567777777777777777778888888655 4777777777788888888888888887777777777888888888


Q ss_pred             CCcCCCCCCCCCCCCCcCceeecCCCccc
Q 009119          460 YNIASLPENPPFSSLPHLQELYLRRMQLR  488 (543)
Q Consensus       460 ~n~~~~~~~~~~~~~~~L~~L~l~~~~l~  488 (543)
                      +|.+..+....|... +|+.|+|++|.+.
T Consensus        89 ~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCCCcccChhhhccc-cccccccCCCccc
Confidence            887776655555444 5777777777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.4e-11  Score=99.26  Aligned_cols=110  Identities=20%  Similarity=0.175  Sum_probs=96.3

Q ss_pred             cCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCC-CCcccCCCccCCCCCccEEEccCCcCCCCCCCCCCCCCcCce
Q 009119          401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN-PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE  479 (543)
Q Consensus       401 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  479 (543)
                      .+...+.++.+++.+.+.+.. +..+++|++|+++++ .++.++..+|.++++|+.|++++|.++.+.+.+|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            345567788888888876544 688899999999876 488899888999999999999999999988889999999999


Q ss_pred             eecCCCccccCchhhhccCCCcEEeCCCCccc
Q 009119          480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQ  511 (543)
Q Consensus       480 L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~  511 (543)
                      |++++|+++.++........|+.|+|++|.+.
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhccccccccccCCCccc
Confidence            99999999999888777778999999999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.38  E-value=1.6e-07  Score=76.00  Aligned_cols=103  Identities=16%  Similarity=0.181  Sum_probs=48.4

Q ss_pred             cCccEEEcCcc-ccc-----cchHHhcCCCCCCEEEcCCCcCc-----ccchhhhccCCCCEEEcCCCCCC-----CCCh
Q 009119           45 VDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPD  108 (543)
Q Consensus        45 ~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~  108 (543)
                      ++|++|+|+++ .+.     .+..++...++|++|++++|.+.     .+..++...+.|++|++++|.++     .+..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            44555555542 232     12234555555555555555544     22234444555555555555544     1223


Q ss_pred             hhcccCCccEEecCCCCccc--------ccccccCCCCCCEEEccCC
Q 009119          109 EIGSATALVKFDCSSNQLKE--------LPSSLGRCLNLSDFKASNN  147 (543)
Q Consensus       109 ~~~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~L~~L~l~~~  147 (543)
                      ++...+.|++|+++++.+..        +...+...+.|++|+++.+
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            34445555555555544332        2233344555666655443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.2e-08  Score=82.36  Aligned_cols=64  Identities=25%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             ccCCCCceeecccCcCCCCCH--HHhhCCCCCCEEEcCCCCCcccCCCccCCCCCccEEEccCCcC
Q 009119          400 SSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA  463 (543)
Q Consensus       400 ~~~~~L~~L~l~~~~i~~~~~--~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~~  463 (543)
                      ..++.|+.|++++|+|+++..  ..+..+++|+.|++++|.+.++....+.....|+++++++|.+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence            345556666666665555432  3344555555555555555554432222233444444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.32  E-value=4.4e-07  Score=73.38  Aligned_cols=106  Identities=16%  Similarity=0.185  Sum_probs=54.9

Q ss_pred             cCCCCCCEEEcCCC-cCc-----ccchhhhccCCCCEEEcCCCCCC-----CCChhhcccCCccEEecCCCCccc-----
Q 009119           65 RNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKE-----  128 (543)
Q Consensus        65 ~~~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~-----  128 (543)
                      .+.+.|++|+|+++ .+.     .+..++...++|++|++++|.+.     .+...+...+.|++|++++|.+..     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34566666666653 333     12234455556666666666554     222334455666666666665551     


Q ss_pred             ccccccCCCCCCEEEccCCcCcc--------CCcccccCCCccEEEecCC
Q 009119          129 LPSSLGRCLNLSDFKASNNCITS--------LPEDLADCSKMSKLDVEGN  170 (543)
Q Consensus       129 ~~~~~~~~~~L~~L~l~~~~~~~--------i~~~~~~~~~L~~L~l~~~  170 (543)
                      +...+...+.|++|+++++.+..        +...+...+.|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            22345555566666666554332        2233444566666665544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.7e-07  Score=72.76  Aligned_cols=81  Identities=28%  Similarity=0.240  Sum_probs=63.0

Q ss_pred             hccCCccEEEcCCCcCccCC---hhhccCCCCceeecccCcCCCCCHHHhhCCCCCCEEEcCCCCCcccCCC-------c
Q 009119          377 WEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD-------G  446 (543)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~-------~  446 (543)
                      ..++.|++|++++|.+++++   ..+..+++|+.|++++|.|+++....+....+|+.|++++|++......       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            45788999999999888764   3467789999999999999988775566677899999999998754322       2


Q ss_pred             cCCCCCccEEE
Q 009119          447 FKDIPMLQILD  457 (543)
Q Consensus       447 ~~~~~~L~~L~  457 (543)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            56678888765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.06  E-value=2.8e-06  Score=68.58  Aligned_cols=61  Identities=25%  Similarity=0.278  Sum_probs=28.7

Q ss_pred             ccCccEEEcCc-cccc-----cchHHhcCCCCCCEEEcCCCcCc-----ccchhhhccCCCCEEEcCCCCCC
Q 009119           44 AVDLQKLILAH-NNIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM  104 (543)
Q Consensus        44 ~~~L~~L~l~~-~~~~-----~l~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~  104 (543)
                      .+.|++|++++ +.++     .+..++..+++|++|++++|.++     .+..++...+.++.++++++.+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34555555554 2232     23344455555555555555544     12223444455555555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.98  E-value=4.1e-06  Score=67.52  Aligned_cols=113  Identities=21%  Similarity=0.200  Sum_probs=80.8

Q ss_pred             HHHHHhhcCeeecCC-Ccccccch-hhhhcccccCCCCccccccCccEEEcCccccc-----cchHHhcCCCCCCEEEcC
Q 009119            4 ILKAARTSGSLNLSN-RSLRDVPN-EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVS   76 (543)
Q Consensus         4 ~~~~~~~~~~l~l~~-~~l~~~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~   76 (543)
                      +....+.+++|++++ +.++.-.. .+.+.+         ...+.|++|++++|.+.     .+...++..+.++.++++
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al---------~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~   82 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEAL---------KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE   82 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHH---------TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHH---------hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhc
Confidence            344458999999998 45653222 233322         23788999999999887     455678889999999999


Q ss_pred             CCcCc-----ccchhhhccCCCCEEEcC--CCCCC-----CCChhhcccCCccEEecCCCC
Q 009119           77 HNKLS-----ELPAAIGELHMLKSLDVS--FNSIM-----KIPDEIGSATALVKFDCSSNQ  125 (543)
Q Consensus        77 ~~~l~-----~~~~~~~~~~~L~~L~l~--~~~~~-----~l~~~~~~~~~L~~L~l~~~~  125 (543)
                      +|.+.     .+..++...++|+.++|+  ++.+.     .+...+..++.|+.|+++.+.
T Consensus        83 ~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          83 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            99877     344577888999987775  44554     244556778888888887654