Citrus Sinensis ID: 009132

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540--

MLRTLRARRRPRYGAQVCALIAALLLLLSVSLLHTRLSQPNQILRHHQLASDDAVFIDPLLSDSDDSNDNNVDKIDELDTLDDNDVVVDNEEKPKMSSSSYYFDHLSGSIRRAFNKRSIDDWDFDYSGFTTLQSNVEDKSKTAFGSDDFPVDDEVRRKMTLVKDIEDALLLKTGKGKSPLREKWGEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDGVGISGLTRGDKVLQKLLLNEFKLVPFIGKKPLGVLDSSGNLNFRGNGREELGRRSEIKRAERRTLDDSVNNESYSKRVNNEEHVKDESSGNATGELYDKEVNDSNKYLSARGNESSKTDEAVRDSKAYQSKNEFSSHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLNNSVGMEDKFPGSSLNGAVMAFRKHRY

cHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccEEEEcccccccccHHHHHHHHHcccccEEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHccccEEEEcccHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccEEEEccEEEEEcccccccccEEEccccccccccEEEEEccccc

ccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccccccccccccccccccccHHHHHccccccHccccccccccccEEEccccEEEEcccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHccHHHHHHcccccccccccccHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccEEccccccccccccEEEcccccEEEEEEEcccccccccccccEEccHcHEEEccccccccHHccccccccccccccccccccccEEEEEEcccccccccccccEccccccEEEccccccccccHHHHHHHHHccccEEEEEEEEcccHHHccHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHccccEEEEcccHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccEEEccEEEEEEcccccccEEEEEEcccccccccEEEEEccccc

mlrtlrarrrpryGAQVCALIAALLLLLSVSLLHtrlsqpnqilrhhqlasddavfidpllsdsddsndnnvdkideldtlddndvvvdneekpkmssssyyfdhLSGSIRRAFnkrsiddwdfdysgfttlqsnvedksktafgsddfpvddeVRRKMTLVKDIEDALLLktgkgksplrekWGEWFDKKGEFLRRDKMFKSHLEVlnpmnnpllqdpdgvgisgltrGDKVLQKLLLNefklvpfigkkplgvldssgnlnfrgngreelgrrSEIKraerrtlddsvnnesyskrvnneehvkdessgnatgelydkevndSNKYlsargnessktdeavrdskayqsknefsshiyadgkrwgyypglhprlsfsnFMDAFFrkgkcdmrvfmvwnsppwmysvrHQRGLESVLFHHRDACVVVFSETieldffkdsfvkdGFKVAVAMPnldellkdtpahefASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSlnnsvgmedkfpgsslnGAVMAFRKHRY

mlrtlrarrrprygAQVCALIAALLLLLSVSLLHTRLSQPNQILRHHQLASDDAVFIDPLlsdsddsndnnvdkideldtlddndvvvdneekpkmssssyyfDHLSGSIRRAFNKRSIDDWDFDYSGFTtlqsnvedksktafgsddfpvddeVRRKMTLVKdiedalllktgkgksplrekwgewfdkkgeFLRRDKMFKSHLEVLNPMNNPLLQDPDGVGISGLTRGDKVLQKLLLNEFKLVPFIGKkplgvldssgnlnfrgngreelgrrseikraerrtlddsvnnesyskrvnneehvkdessgnatgelydkEVNDSNKYLsargnessktdeavrdskayqsknefsshiyaDGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLNNSVGmedkfpgsslngavmafrkhry

MLrtlrarrrprYGAQVCaliaalllllsvsllhtrlsQPNQILRHHQLASDDAVFIDPLLsdsddsndnnVDKIdeldtlddndvvvdneeKPKMSSSSYYFDHLSGSIRRAFNKRSIDDWDFDYSGFTTLQSNVEDKSKTAFGSDDFPVDDEVRRKMTLVKDIEDALLLKTGKGKSPLREKWGEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDGVGISGLTRGDKVLQKLLLNEFKLVPFIGKKPLGVLDSSGNLNFRGNGREELGRRSEIKRAERRTLDDSVNNESYSKRVNNEEHVKDESSGNATGELYDKEVNDSNKYLSARGNESSKTDEAVRDSKAYQSKNEFSSHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKslsslnnsVGMEDKFPGSSLNGAVMAFRKHRY

***********RYGAQVCALIAALLLLLSVSLLHTRLSQPNQILRHHQLASDDAVFIDPL****************************************YYFDHLSGSIRRAFNKRSIDDWDFDYSGFTTLQ*********************VRRKMTLVKDIEDALLLKTGKGKSPLREKWGEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDGVGISGLTRGDKVLQKLLLNEFKLVPFIGKKPLGVLD***************************************************************************************************SHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLS*****************************

************YGAQVCALIAALLLLLSVSLL*****************************************IDELDTL********************YFDHLSGSIRRAFNKRSIDDWDFDYSG*****************SDDFPVDDEVRRKMTLVKDIEDALLLKTGK***PLREKWGEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDGV**SGLTRGDKVLQKLLLNEFKLVPFIGKKPLGV*********************************SVNNESYSKRVNNEEHV********************************************************DGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLNNSVGMEDKFPGSSLNGAVMAFRKH**

**********PRYGAQVCALIAALLLLLSVSLLHTRLSQPNQILRHHQLASDDAVFIDPLLSDSDDSNDNNVDKIDELDTLDDNDVVVDNEEKPKMSSSSYYFDHLSGSIRRAFNKRSIDDWDFDYSGFTTLQSNVEDKSKTAFGSDDFPVDDEVRRKMTLVKDIEDALLLKTGKGKSPLREKWGEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDGVGISGLTRGDKVLQKLLLNEFKLVPFIGKKPLGVLDSSGNLNFRGNGREELGRRSEIKRAERRTLDDSVNNESYSKRVNN**********NATGELYDKEVNDSNKYLS****************KAYQSKNEFSSHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLNNSVGMEDKFPGSSLNGAVMAFRKHRY

******ARRRPRYGAQVCALIAALLLLLSVSLLHTRL***************D******************VDKIDELDTLDDNDVV********MSSSSYYFDHLSGSIRRAFNKRSIDDWDFDYSGFTT************FGSDDFPVDDEVRRKMTLVKDIEDALLLKTGKGKSPLREKWGEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDGVGISGLTRGDKVLQKLLLNEFKLVPFIGKKPLGVLDSSGNLNFRGNGREELGRRSEIKRAERRTLDDSVNNESYSKRVNNEEHVKDESS****************************TDEAVRDSKAYQSKNEFSSHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLNNSVGMEDKFPGSSLNGAVMAFRK***

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iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		542	2.2.26 [Sep-21-2011]
P0C8Q4		644	Uncharacterized protein A	yes	no	0.874	0.736	0.543	1e-154
Q9JI93		360	Lactosylceramide 4-alpha-	yes	no	0.223	0.336	0.323	7e-09
Q67BJ4		359	Lactosylceramide 4-alpha-	yes	no	0.153	0.231	0.4	1e-08
Q9NPC4		353	Lactosylceramide 4-alpha-	yes	no	0.153	0.235	0.4	2e-08
Q9N291		353	Lactosylceramide 4-alpha-	yes	no	0.153	0.235	0.4	2e-08
Q9N290		327	Lactosylceramide 4-alpha-	N/A	no	0.153	0.253	0.4	5e-08
Q9N289		218	Lactosylceramide 4-alpha-	N/A	no	0.154	0.385	0.370	6e-08

>sp\|P0C8Q4\|Y4990_ARATH Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1	Back alignment and function desciption

 Score =  545 bits (1405), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 304/559 (54%), Positives = 377/559 (67%), Gaps = 85/559 (15%)

Query: 13  YGAQVCALIAALLLLLSVSLLHTRLS-----QPNQILRHHQLASDDAVFIDPLL-SDSD- 65
           +GAQ CA+++A+LLL SVSLL+TRLS      PN +      + D  +F D +L SDSD 
Sbjct: 11  HGAQACAVMSAVLLLASVSLLYTRLSLFSSHSPNHL--RSGSSEDTVLFPDSVLVSDSDV 68

Query: 66  --------DSNDNNVDKIDELDTLDDNDVVVDNEEKPK---------------MSSSSYY 102
                    S  +  D+IDE D   ++D V + E++ +                SSS +Y
Sbjct: 69  ETTGGGGRGSTTSTEDRIDEHDDAIEDDGVSNEEDENQDAEQEQEVDLNRNKAASSSGFY 128

Query: 103 FDHLSGSIRRAFNKRSIDDWDFDYSGFTTLQSNVEDKS-KTAFGSDDFPVDDEVRRKMTL 161
           FDH++G IRRAFNKRSID+WD+DY+GF+    +  DKS + AFGSDD P+D+ +RRK+  
Sbjct: 129 FDHVNGVIRRAFNKRSIDEWDYDYTGFSIDSDSSGDKSSRAAFGSDDVPLDESIRRKIVE 188

Query: 162 VKDIEDALLLKTGKGKSPLREKWGEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDG 221
           V  +EDALLLK+GK  SPLR+ WG+WFDKKG+FLRRD+MFKS++E LNP+NNP+LQDPD 
Sbjct: 189 VTSVEDALLLKSGKKVSPLRQGWGDWFDKKGDFLRRDRMFKSNIETLNPLNNPMLQDPDS 248

Query: 222 VGISGLTRGDKVLQKLLLNEFKLVPFIGKKPLGVLDSSGNLN-FRGNGREELGRRSEIKR 280
           VG +GLTRGDKV+QK  LN+ K  PF+ KKPL V+      N FR      L    EIKR
Sbjct: 249 VGNTGLTRGDKVVQKWRLNQIKRNPFMAKKPLSVVSEKKEPNEFRL-----LSSVGEIKR 303

Query: 281 AERRTLDDSVNNESYSKRVNNEEHVKDESSGNATGELYDKEVNDSNKYLSARGNESSKTD 340
            ER+TLD             N+E ++ E   N   E                        
Sbjct: 304 GERKTLD-------------NDEKIEREEQKNVESE------------------------ 326

Query: 341 EAVRDSKAYQSKNEFSSHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWN 400
                    +  +E + H+YADG +WGYYPG+ P LSFS+FMD+FFRK KC MRVFMVWN
Sbjct: 327 ---------RKHDEVTEHMYADGTKWGYYPGIEPSLSFSDFMDSFFRKEKCSMRVFMVWN 377

Query: 401 SPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELL 460
           SP WM+SVRHQRGLES+L  HRDACVVVFSET+ELDFF++SFVKD +KVAVAMPNLDELL
Sbjct: 378 SPGWMFSVRHQRGLESLLSQHRDACVVVFSETVELDFFRNSFVKDSYKVAVAMPNLDELL 437

Query: 461 KDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLNNSVG 520
           +DTP H FASVWF+WRKTKFY THYSELVRLAALYKYGG+Y+DSD+IVL SLSSL N++G
Sbjct: 438 QDTPTHVFASVWFDWRKTKFYPTHYSELVRLAALYKYGGVYLDSDVIVLGSLSSLRNTIG 497

Query: 521 MEDKFPGSSLNGAVMAFRK 539
           MED+  G SLNGAVM+F K
Sbjct: 498 MEDQVAGESLNGAVMSFEK 516

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9JI93\|A4GAT_RAT Lactosylceramide 4-alpha-galactosyltransferase OS=Rattus norvegicus GN=A4galt PE=1 SV=1	Back alignment and function description

>sp\|Q67BJ4\|A4GAT_MOUSE Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus GN=A4galt PE=2 SV=1	Back alignment and function description

>sp\|Q9NPC4\|A4GAT_HUMAN Lactosylceramide 4-alpha-galactosyltransferase OS=Homo sapiens GN=A4GALT PE=2 SV=1	Back alignment and function description

>sp\|Q9N291\|A4GAT_PANTR Lactosylceramide 4-alpha-galactosyltransferase OS=Pan troglodytes GN=A4GALT PE=3 SV=1	Back alignment and function description

>sp\|Q9N290\|A4GAT_GORGO Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Gorilla gorilla gorilla GN=A4GALT PE=3 SV=1	Back alignment and function description

>sp\|Q9N289\|A4GAT_PONPY Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Pongo pygmaeus GN=A4GALT PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		542
255566307		691	lactosylceramide 4-alpha-galactosyltrans	0.944	0.740	0.589	1e-167
449434200		634	PREDICTED: uncharacterized protein At4g1	0.974	0.832	0.554	1e-157
359473049		707	PREDICTED: uncharacterized protein At4g1	0.931	0.714	0.550	1e-155
449490682		631	PREDICTED: uncharacterized protein At4g1	0.905	0.778	0.565	1e-154
5738362		1302	putative protein [Arabidopsis thaliana]	0.874	0.364	0.542	1e-153
334186714		644	alpha 1,4-glycosyltransferase-like prote	0.874	0.736	0.543	1e-152
297737957		1664	unnamed protein product [Vitis vinifera]	0.708	0.230	0.632	1e-150
449490684		537	PREDICTED: uncharacterized protein At4g1	0.892	0.901	0.533	1e-135
356577111		603	PREDICTED: uncharacterized protein At4g1	0.867	0.779	0.536	1e-133
357475201		576	hypothetical protein MTR_4g084060 [Medic	0.289	0.272	0.793	8e-86

>gi\|255566307\|ref\|XP_002524140.1\| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis] gi\|223536607\|gb\|EEF38251.1\| lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 335/568 (58%), Positives = 404/568 (71%), Gaps = 56/568 (9%)

Query: 13  YGAQVCALIAALLLLLSVSLLHTRLSQPNQILRH--HQLASDD----AVFIDPLLSDSDD 66
           YGAQVCA+I+ALLLLLSVSLLHTR+S  +    H  HQ   DD     +  +PLLSDS D
Sbjct: 13  YGAQVCAVISALLLLLSVSLLHTRISSSSHHHHHSVHQNDDDDETSTIIHQNPLLSDSAD 72

Query: 67  SNDNNV-DKIDELDTLDDNDVVV-----DNEE--------------KPKMSSSSYYFDHL 106
            N N+V DKIDELDT +D          DN E              K  +S+S YY DH+
Sbjct: 73  DNSNDVVDKIDELDTFEDQKDTTGIRNYDNNEGSLEDESGLQAQIKKTAVSASGYYVDHI 132

Query: 107 SGSIRRAFN-KRSIDDWDFDYSGFTTLQSNVEDKSKTAFGSDDFPVDDEVRRKMTLVKDI 165
           +GSIRRAFN KRSID+WD+DYS F+ ++ +   KSK AFGSDD P+D++VRRK+  V  I
Sbjct: 133 TGSIRRAFNNKRSIDEWDYDYSSFSAVEDH--QKSKAAFGSDDIPIDEDVRRKVNEVDGI 190

Query: 166 EDALLLKTGKGKSPLREKWGEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDGVGIS 225
           EDALLLK GK  SPLRE WG+WFDKKG+FLRRD+MFKS+LEVLNP+NNPLLQDPD VG +
Sbjct: 191 EDALLLKIGKRVSPLREGWGDWFDKKGDFLRRDRMFKSNLEVLNPLNNPLLQDPDAVGFT 250

Query: 226 GLTRGDKVLQKLLLNEFKLVPFIGKKPLGVLDSSGNLNFRGNGRE------ELGRRSEIK 279
           GLTRGDKV+QK LLNEFK  PF+ K PL VL  +  +   GN  E      +   R   K
Sbjct: 251 GLTRGDKVVQKFLLNEFKRNPFLIKNPLRVLRMTHEVEENGNDVEIRKSASDFNSRDGSK 310

Query: 280 RAERRTLDDSVNNESYSKRVNN-EEHVKDESSGNATG--ELYDKEVNDSNKYLSARGNES 336
            AERR  D++V+ ESY KRVNN +E++ ++   N T    L D+  NDS K LS+  + +
Sbjct: 311 IAERRIFDENVSTESYGKRVNNVQENLNEDEKTNVTQGDNLSDRLSNDSRKDLSSANSIT 370

Query: 337 SKTDEA----VRDSKAYQSKNEFSSHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCD 392
            +  +      R+SK  Q K+E  S+IYADGKRWGY+PGLHP LSFS+FMD+FFRKGKCD
Sbjct: 371 VELKQMDGVENRESKIIQRKSEELSYIYADGKRWGYFPGLHPHLSFSDFMDSFFRKGKCD 430

Query: 393 MRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVA 452
           +RVFMVWNSPPWMY+VRHQRGL+S+LFHHRDAC++V SETIELDFF  SFVKDG      
Sbjct: 431 LRVFMVWNSPPWMYTVRHQRGLDSLLFHHRDACLIVLSETIELDFFAGSFVKDG------ 484

Query: 453 MPNLDELLKDTPAHEFASVWFEWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSL 512
                   +DTP H FA VW +WR TKFY THYSEL+RLAALYKYGGIY+DSDIIVL  L
Sbjct: 485 --------QDTPTHVFADVWSQWRSTKFYPTHYSELIRLAALYKYGGIYLDSDIIVLNPL 536

Query: 513 SSLNNSVGMEDKFPGSSLNGAVMAFRKH 540
           SSL+N+VG+E +  GSSLNGAVMAF+K+
Sbjct: 537 SSLHNTVGLEGQIAGSSLNGAVMAFKKN 564

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449434200\|ref\|XP_004134884.1\| PREDICTED: uncharacterized protein At4g19900-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359473049\|ref\|XP_002276821.2\| PREDICTED: uncharacterized protein At4g19900-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449490682\|ref\|XP_004158676.1\| PREDICTED: uncharacterized protein At4g19900-like isoform 1 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|5738362\|emb\|CAB52870.1\| putative protein [Arabidopsis thaliana] gi\|7268785\|emb\|CAB78991.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334186714\|ref\|NP_193724.2\| alpha 1,4-glycosyltransferase-like protein [Arabidopsis thaliana] gi\|223635837\|sp\|P0C8Q4.1\|Y4990_ARATH RecName: Full=Uncharacterized protein At4g19900 gi\|332658843\|gb\|AEE84243.1\| alpha 1,4-glycosyltransferase-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297737957\|emb\|CBI27158.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449490684\|ref\|XP_004158677.1\| PREDICTED: uncharacterized protein At4g19900-like isoform 2 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356577111\|ref\|XP_003556671.1\| PREDICTED: uncharacterized protein At4g19900-like [Glycine max]	Back alignment and taxonomy information

>gi\|357475201\|ref\|XP_003607886.1\| hypothetical protein MTR_4g084060 [Medicago truncatula] gi\|85719350\|gb\|ABC75355.1\| Glycosyltransferase sugar-binding region containing DXD motif; Alpha 1,4-glycosyltransferase conserved region [Medicago truncatula] gi\|355508941\|gb\|AES90083.1\| hypothetical protein MTR_4g084060 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		542
TAIR\|locus:2095264		411	AT3G09020 [Arabidopsis thalian	0.278	0.367	0.325	5.3e-13
TAIR\|locus:4010713690		380	AT2G38152 [Arabidopsis thalian	0.263	0.376	0.335	5.3e-13
TAIR\|locus:2206006		435	AT1G61050 [Arabidopsis thalian	0.298	0.372	0.3	2.9e-12
TAIR\|locus:2150104		407	AT5G01250 [Arabidopsis thalian	0.297	0.395	0.321	8.9e-12
TAIR\|locus:2042897		405	AT2G38150 [Arabidopsis thalian	0.261	0.350	0.283	1.5e-09
UNIPROTKB\|G3MZ03		368	LOC618369 "Uncharacterized pro	0.149	0.220	0.379	3.6e-06
UNIPROTKB\|I3L755		359	A4GALT "Uncharacterized protei	0.149	0.225	0.367	4.4e-06
MGI\|MGI:3512453		359	A4galt "alpha 1,4-galactosyltr	0.153	0.231	0.366	5.7e-06
UNIPROTKB\|Q9NPC4		353	A4GALT "Lactosylceramide 4-alp	0.153	0.235	0.366	7e-06
RGD\|621583		360	A4galt "alpha 1,4-galactosyltr	0.225	0.338	0.309	7.3e-06

TAIR\|locus:2095264 AT3G09020 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 199 (75.1 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 55/169 (32%), Positives = 85/169 (50%)

Query:   386 FRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIE-LDFFK--DSF 442
             F +  C+++  M W SP  ++  R    +ESV   H   C+++ S T++ L  F+    F
Sbjct:   122 FLRDDCEVKFMMTWISPAELFGKREILSVESVFKSHARGCLMILSSTMDSLQGFRILKPF 181

Query:   443 VKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWRKT------KF-YNTHYSELVRLAALY 495
             +  G++V    P+L  LLKDT        W E  +T      K     + S L+RLA L+
Sbjct:   182 LDRGYRVMAVTPDLPFLLKDTAGES----WLEEIQTGKRDPGKISLAQNLSNLMRLAYLF 237

Query:   496 KYGGIYMDSDIIVLKXXXXXXXXVGMEDKFPGSS----LNGAVMAFRKH 540
             K+GG+Y+D+D+IVLK        +G +   P S     LN AV+ F K+
Sbjct:   238 KFGGVYLDTDMIVLKSFKTLRNVIGAQTLEPVSRNWTRLNNAVLIFDKN 286

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR\|locus:4010713690 AT2G38152 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2206006 AT1G61050 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2150104 AT5G01250 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2042897 AT2G38150 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|G3MZ03 LOC618369 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|I3L755 A4GALT "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:3512453 A4galt "alpha 1,4-galactosyltransferase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NPC4 A4GALT "Lactosylceramide 4-alpha-galactosyltransferase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|621583 A4galt "alpha 1,4-galactosyltransferase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C8Q4	Y4990_ARATH	No assigned EC number	0.5438	0.8745	0.7360	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G19900	glycosyl transferase-related; glycosyl transferase-related; FUNCTIONS IN- transferase activity, transferring glycosyl groups; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, Golgi stack; EXPRESSED IN- flower, seed; EXPRESSED DURING- petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s- Pentatricopeptide repeat (InterPro-IPR002885), Alpha 1,4-glycosyltransferase conserved region (InterPro-IPR007652), Glycosyltransferase sugar-binding region containing DXD motif (InterPro-IPR007577); BEST Arabidopsis thaliana protein match [...] (1302 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		542
pfam04488		93	pfam04488, Gly_transf_sug, Glycosyltransferase sug	2e-19
pfam05704		279	pfam05704, Caps_synth, Capsular polysaccharide syn	6e-04

>gnl\|CDD\|218109 pfam04488, Gly_transf_sug, Glycosyltransferase sugar-binding region containing DXD motif	Back alignment and domain information

 Score = 82.8 bits (205), Expect = 2e-19
 Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 29/121 (23%)

Query: 407 SVRHQRGLESVLFHHRDACVVVFSETIELDFFKDSFVKDGFKVAVAMPNLDELLKDTPAH 466
             R  + +ES++  H D CVVV ++                     + +++ L  DTP  
Sbjct: 1   PEREMKAIESLISLHPDYCVVVLNDD-----------------LDKILDINFLKSDTP-- 41

Query: 467 EFASVWF-EWRKTKFYNTHYSELVRLAALYKYGGIYMDSDIIVLKSLSSLNNSVGMEDKF 525
                WF E           S+L+R A LYKYGGIY+D+D+I LKSL    NS+G +++F
Sbjct: 42  -----WFLEAYSLLPLFAAKSDLLRYAILYKYGGIYLDTDVIPLKSL----NSIGAQERF 92

Query: 526 P 526
            
Sbjct: 93  L 93

The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases. Length = 93

>gnl\|CDD\|218707 pfam05704, Caps_synth, Capsular polysaccharide synthesis protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		542
KOG1928		409	consensus Alpha-1,4-N-acetylglucosaminyltransferas	100.0
PF04488		103	Gly_transf_sug: Glycosyltransferase sugar-binding	99.78
PF05704		276	Caps_synth: Capsular polysaccharide synthesis prot	99.7
COG3774		347	OCH1 Mannosyltransferase OCH1 and related enzymes	99.24
PF12919		514	TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase	98.28
cd02537		240	GT8_Glycogenin Glycogenin belongs the GT 8 family	92.99
cd06429		257	GT8_like_1 GT8_like_1 represents a subfamily of GT	91.07
PRK15171		334	lipopolysaccharide 1,3-galactosyltransferase; Prov	90.17
cd06431		280	GT8_LARGE_C LARGE catalytic domain has closest hom	88.8
cd04194		248	GT8_A4GalT_like A4GalT_like proteins catalyze the	84.92
cd06432		248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	84.67
cd00505		246	Glyco_transf_8 Members of glycosyltransferase fami	84.64
PF01501		250	Glyco_transf_8: Glycosyl transferase family 8; Int	83.36

>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=2.8e-46  Score=383.60  Aligned_cols=275  Identities=32%  Similarity=0.433  Sum_probs=222.0

Q ss_pred             hhhhccchhhhhccccccccccccCCCCCCCCCCCCCCCcccccchhHHHHHHHHhhhcccccccCCCCccccCCCCccc
Q 009132          185 GEWFDKKGEFLRRDKMFKSHLEVLNPMNNPLLQDPDGVGISGLTRGDKVLQKLLLNEFKLVPFIGKKPLGVLDSSGNLNF  264 (542)
Q Consensus       185 ~~w~~~~~~~l~~~~m~~~~~~~~np~nnp~lqdpd~~~~t~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (542)
                      ++|+||+++++|++||+||+.+ |++.++|||||||+++ |.|+.+++++      +..+.||+.++++++....     
T Consensus         3 ~~~~~~~~~~~~~~rl~~s~~~-l~~~~~~~~~~~~~~~-~~l~~~~~v~------~~~~~~~~~~~i~~~~~~~-----   69 (409)
T KOG1928|consen    3 HDITDKVLLVLDLRRLNRSGSS-LFTAFAPMLLDLDSVT-TLLVSNLSVV------RDFSPPFVLIEILSVVPSL-----   69 (409)
T ss_pred             CchhhhhhhhHhHHHHhhcccc-cchhhhhhhhhhceee-EEEEccceee------eccCCcceEEEeccccccc-----
Confidence            7899999999999999999999 9999999999999999 9999999998      6678899999999987642     


Q ss_pred             CCCCccccchhhhhHHhhhhccccccccccccccccccccccccCCCCcccccchhhccchhhhhhccCCCCCchhhhhh
Q 009132          265 RGNGREELGRRSEIKRAERRTLDDSVNNESYSKRVNNEEHVKDESSGNATGELYDKEVNDSNKYLSARGNESSKTDEAVR  344 (542)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (542)
                      +.....+.+-.++-..    .++....+             +.|-     .+                         +  
T Consensus        70 ~~~~e~~~~~~~~~~~----~~~q~~~~-------------~~e~-----~~-------------------------l--  100 (409)
T KOG1928|consen   70 PVSNEFELLFSVGRSL----SLKQKTTV-------------NGEK-----IE-------------------------L--  100 (409)
T ss_pred             cccchhhhhcchhhhh----hheeeeee-------------cccc-----ch-------------------------h--
Confidence            1122222222222000    00000000             0000     00                         0  


Q ss_pred             hhhhhhcccccccccccCCccccccCCCCCCcChhhhhhhhcccccccceEEEEecCCCCCCcHHHHHHHHHHHHHCCCC
Q 009132          345 DSKAYQSKNEFSSHIYADGKRWGYYPGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDA  424 (542)
Q Consensus       345 ~~~~~~~~~e~~~~~~~d~~~wg~y~g~~~sl~Fs~~~~iFF~etsC~~rIFf~WtSg~~~L~~RqaCAVESAARhNPD~  424 (542)
                                         .+-..++|-.++.+|+.++..||..+ |+.+|||+|+|+++.++.||+|+|||++++||++
T Consensus       101 -------------------~e~~~~~s~~~~~sf~~~~~~~~~~~-c~~~~fm~w~S~~~~f~~r~~~sIESa~k~hP~~  160 (409)
T KOG1928|consen  101 -------------------QELENLSSELKSPSFQSRVNSFFRKE-CSVRFFMTWISPAESFGVREMCSIESAFKTHPEG  160 (409)
T ss_pred             -------------------hheeeccccccCcccCCCcchhhccC-CceeEEEEecccccCCChhhhhhhHHHHhhCCCc
Confidence                               11233555566799999999999987 9999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCcc---cccchhhhcccceeeecCChhhhhcCCChhhhhhhHHhhh---ccCCcchhhhhHHHHHHHHhcC
Q 009132          425 CVVVFSETIELD---FFKDSFVKDGFKVAVAMPNLDELLKDTPAHEFASVWFEWR---KTKFYNTHYSELVRLAALYKYG  498 (542)
Q Consensus       425 eViVLsetl~ld---~fk~pFLkegYNV~Vv~pDL~eLfkGTPLe~f~~~W~kw~---ks~y~~~HlSDlLRl~vLYKYG  498 (542)
                      ||+|++++.+..   ....+|+..+|++..+.+|++.++++||.+.|+..|+.|+   ..++..+|+||++|+++|||||
T Consensus       161 cv~vls~t~ds~~~~s~~kp~~~~~lsv~~v~~~lp~llk~t~~e~~l~~~k~g~~~~~~~~l~~~lSdl~RLA~LyKYG  240 (409)
T KOG1928|consen  161 CVVVLSKTMDSPNGYSILKPFLDSGLSVIAVTPDLPFLLKDTPGETWLERWKDGRLDPGKIPLLQNLSDLSRLALLYKYG  240 (409)
T ss_pred             eEEEEEccccCCCCccccccHhHhhhhhcccccCchhhHhhCccccHHHHHHhcccCCCcccchhhHHHHHHHHHHHHhC
Confidence            999999875442   2233788999999999999999999999999999999886   4556678899999999999999


Q ss_pred             ceEEeCCceEecccchhccccc-cccCCCCCCccccEEEEecCC
Q 009132          499 GIYMDSDIIVLKSLSSLNNSVG-MEDKFPGSSLNGAVMAFRKHR  541 (542)
Q Consensus       499 GIYLDlDVIvlKPLd~LlNfvG-~E~s~~~~~LnNAVMaFeKgH  541 (542)
                      |||||||||++|++..++|.|| .+.+..|.++|||||+|+++|
T Consensus       241 GvYLDTDvIvLksl~~l~N~ig~~~~~~~~~~lnnavl~F~k~H  284 (409)
T KOG1928|consen  241 GVYLDTDVIVLKSLSNLRNVIGVDPATQAWTRLNNAVLIFDKNH  284 (409)
T ss_pred             CEEeeccEEEecccccccccccccchhhHHHhhcCceeecCCCC
Confidence            9999999999999999999999 555456899999999999999

>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif	Back alignment and domain information

>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins	Back alignment and domain information

>COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins	Back alignment and domain information

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen	Back alignment and domain information

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function	Back alignment and domain information

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional	Back alignment and domain information

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis	Back alignment and domain information

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	Back alignment and domain information

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family	Back alignment and domain information

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis	Back alignment and domain information

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		542
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 70.7 bits (172), Expect = 7e-13
 Identities = 86/566 (15%), Positives = 160/566 (28%), Gaps = 174/566 (30%)

Query: 10  RPRYGAQVCALIAALLLLLSVS--LLH-------TRLSQPNQILRHH--QLASDDAVF-I 57
           R +       L  ALL L      L+        T ++    +   +  Q   D  +F +
Sbjct: 133 RLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKTWVA--LDVCLSYKVQCKMDFKIFWL 187

Query: 58  DPLLSDSDDSNDNNVDKIDELDTLDDNDVVVDNEEKPKMSSSSYYFDHLSGSIRRAFNKR 117
           +    +S +        ++ L  L               S+       +   +RR    +
Sbjct: 188 NLKNCNSPE------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 118 S-------IDD-WD------FDYSG---FTTLQSNVEDKSKTAFGSDDFPVDDEVRRKMT 160
                   + +  +      F+ S     TT    V D    A  +    +D      MT
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH-ISLDHH---SMT 297

Query: 161 LVKDIEDALLLK-----------TGKGKSPL---------RE---KWGEWFDKKGEFLRR 197
           L  D   +LLLK                +P          R+    W  W  K     + 
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKL 355

Query: 198 DKMFKSHLEVLNPMNN-PLLQD----PDGVGISGLTRGDKVLQKLLLNEFKLVPFIGKKP 252
             + +S L VL P     +       P    I        +L  +  +  K    +    
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-----TILLSLIWFDVIKSDVMV---- 406

Query: 253 LGVLDSSGNLNFRGNGREELGRRSEIKRAERRTLDDSVNNESYSKRVNN---EEHVKDES 309
             V++             +L + S +++            +  +  + +   E  VK E+
Sbjct: 407 --VVN-------------KLHKYSLVEK----------QPKESTISIPSIYLELKVKLEN 441

Query: 310 SGNATGELYDKEVNDSNKYLSARGNESSKTDEAVRDSKAYQSKNEFSSHIYADGKRWGYY 369
                  L+   V+    Y   +  +S        D   Y     F SHI       G+ 
Sbjct: 442 EY----ALHRSIVD---HYNIPKTFDSDDLIPPYLDQ--Y-----FYSHI-------GH- 479

Query: 370 PGLHPRLSFSNFMDAFFRKGKCDMRVFMVWNSPPWMYS-VRHQRGLESVLFHHRDACVVV 428
              H +          FR    D R         ++   +RH            +A   +
Sbjct: 480 ---HLKNIEHPERMTLFRMVFLDFR---------FLEQKIRHDSTA-------WNASGSI 520

Query: 429 FSETIELDFFKDSFVKDGFKVAVAMPNLDELLKD----TPAHEFASVWFEWRKTKFYNTH 484
            +   +L F+K     +        P  + L+       P  E               + 
Sbjct: 521 LNTLQQLKFYKPYICDND-------PKYERLVNAILDFLPKIE----------ENLICSK 563

Query: 485 YSELVRLAALYKYGGIYMDSDIIVLK 510
           Y++L+R+A + +   I+ ++   V +
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		542
2bvl_A		543	Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.	98.81
2vk9_A		551	Alpha-toxin; glycosyltransferase; 2.85A {Clostridi	98.71
4dmv_A		556	Toxin A, TCDA; transferase; 1.50A {Clostridium dif	98.52
3tzt_A		276	Glycosyl transferase family 8; structural genomics	94.02
3jsz_A		525	LGT1, putative uncharacterized protein; glucosyltr	89.83
1ll2_A		333	Glycogenin-1; protein-substrate complex, beta-alph	88.93
3u2u_A		263	Glycogenin-1, GN-1, GN1; structural genomics, stru	86.97

>2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} SCOP: c.68.1.22 PDB: 2bvm_A* 2vkh_A* 2vkd_A* 2vl8_A*	Back alignment and structure

Probab=98.81  E-value=5.7e-09  Score=111.65  Aligned_cols=42  Identities=14%  Similarity=0.117  Sum_probs=38.2

Q ss_pred             ccceEEEEecCCCCCCcHHHHHHHHHHHHHCCCCEEEEEeCCCC
Q 009132          391 CDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETIE  434 (542)
Q Consensus       391 C~~rIFf~WtSg~~~L~~RqaCAVESAARhNPD~eViVLsetl~  434 (542)
                      -.+.||+||.++.  +|..++.||+||.+++|||+|++|.++..
T Consensus        94 IPKiIHyiW~Gg~--~P~~~~~cI~sWkk~~PDYei~lW~D~na  135 (543)
T 2bvl_A           94 VEKNLHFVWIGGQ--INDTAINYINQWKDVNSDYNVNVFYDSNA  135 (543)
T ss_dssp             CCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECTTC
T ss_pred             CCCceEEEEeCCC--CCHHHHHHHHHHHHHCcCCEEEEEecchh
Confidence            4689999999998  69999999999999999999999987644

PyMOL of 2bvl

>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22	Back alignment and structure

>4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB: 4dmw_A* 3ss1_A 3srz_A	Back alignment and structure

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0	Back alignment and structure

>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*	Back alignment and structure

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*	Back alignment and structure

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		542
d2bvla1		542	Toxin B {Clostridium difficile [TaxId: 1496]}	98.51
d2vk9a1		540	Alpha-toxin {Clostridium novyi [TaxId: 1542]}	98.32
d1ll2a_		263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	96.05
d1ga8a_		282	Galactosyltransferase LgtC {Neisseria meningitidis	95.27

>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId: 1496]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycosylating toxin catalytic domain-like
domain: Toxin B
species: Clostridium difficile [TaxId: 1496]

Probab=98.51  E-value=1.1e-07  Score=99.66  Aligned_cols=43  Identities=14%  Similarity=0.101  Sum_probs=38.7

Q ss_pred             ccccceEEEEecCCCCCCcHHHHHHHHHHHHHCCCCEEEEEeCCC
Q 009132          389 GKCDMRVFMVWNSPPWMYSVRHQRGLESVLFHHRDACVVVFSETI  433 (542)
Q Consensus       389 tsC~~rIFf~WtSg~~~L~~RqaCAVESAARhNPD~eViVLsetl  433 (542)
                      .+-.++|||+|.+|.  +|..+..+|..|.+.+|++++.+|.+..
T Consensus        92 ~~I~K~IH~IWIgG~--~Pd~~~~YI~~wl~~~~dy~~~lW~D~n  134 (542)
T d2bvla1          92 TPVEKNLHFVWIGGQ--INDTAINYINQWKDVNSDYNVNVFYDSN  134 (542)
T ss_dssp             EECCSEEEEECCSSC--CCHHHHHHHHHHHHHCTTSEEEEEECTT
T ss_pred             cccCCceEEEEeCCC--CCcchHHHHHHHHHHCCCCeEEEEECCc
Confidence            356799999999977  7999999999999999999999998763

PyMOL of d2bvla1

>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId: 1542]}	Back information, alignment and structure

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure