Citrus Sinensis ID: 009139

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540--
MESLQVTRLLSWKSFLNTAAKAGTTRFRATTQLGFPPLSKKATKNGFLMIRRSFTNASTGSGSSSGGTDAVSGNISSHDSSSPPVEDEKDENKPGYLLGQEKDGSGLVIGFHFIPPSGDHEVIDSSKDIDGYGVKKIEDVEGEDKAQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAG
ccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHccHHHHHHHccccEEEEcccccccccccHHHcccccccEEEEEEEcccEEEEEEEEEEEcccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHccEEcccccHHHHHHccccccccHHHHHHHcccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEEcHHHHHccccc
cccccccHHccccccccHcccccccEEEcEcEccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHcccccccccccccccccccccccEEEEEEEccccccccccHHHHHcccHHHHHHccccEEEEEcccccccccHHHHHHHHcccEEEEEEEccccEEEEEEEEEEcccEEEEEEcccHccccccccccccccccHHHHHHHHHHHHHHcHcHccccccccccccEEEEccHHHHHHHHHHHHHHcccccHHccEEEEEEEHHHHcccccHHHHHHccccHHHHHHcccccccccccccccccccHHHHHHHHHHccEEEEEcccHHHHHccccccccHHHHHHHccccEEEEEEcccccccccccccccccccccccHcHHHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHcc
MESLQVTRLLSWKSFLNTAAKAGTTRfrattqlgfpplskkatknGFLMIRRSftnastgsgsssggtdavsgnisshdsssppvedekdenkpgyllgqekdgsglvigfhfippsgdhevidsskdidgygvkkiedvegedkaqtrVSYNIVFVTaeaapysktgglgdvcgSLPVALAARghrvmvvspryfngtaadenFTLAKDLGCCMKICCFGGEQEIAFFHEyregvdwvfvdhpsyhrpgnpygdingafgdnqFRYTLLCYAAceaplvlplggftygekcIFLVNDWHAGLVPVLLaskyrphgvykdaRSILVIHNlshqgvepaatyknlglpsewygalewvfptwarthaldtgeAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITngiditewnpssdehiashysiddlsgkVQCKIALQKelglpirpdcpligfigrldyqKGIDLIRLAapeiladdiqfvmlgsgdpqfeswmrdteatykdkyrgwvgfnvpishritag
MESLQVTRLLSWKSFLNTAAKagttrfrattqlgfpplskkatknGFLMIRRSFTnastgsgsssggTDAVSGNisshdsssppvedekDENKPGYLLGQEKDGSGLVIGFHFIPPSGDHEVIDSSKDIDGYGVKKIedvegedkaqtrvSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEAtykdkyrgwvgfnvpishritag
MESLQVTRLLSWKSFLNTAAKAGTTRFRATTQLGFPPLSKKATKNGFLMIRRSFTNAstgsgsssggtDAVSGNISSHDSSSPPVEDEKDENKPGYLLGQEKDGSGLVIGFHFIPPSGDHEVIDSSKDIDGYGVKKIEDVEGEDKAQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAG
*****VTRLLSWKSFLNTAAKAGTTRFRATTQLGFPP*******NGFLMI*****************************************************GSGLVIGFHFIPPSGDHEVIDSSKDIDGYGVKKIEDVEGEDKAQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISH*****
*********************************************************************************************************************************************************IVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAG
MESLQVTRLLSWKSFLNTAAKAGTTRFRATTQLGFPPLSKKATKNGFLMIRRSFTN***********************************NKPGYLLGQEKDGSGLVIGFHFIPPSGDHEVIDSSKDIDGYGVKKIEDVEGEDKAQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAG
*****VTRLLSWKSFLNTAAKAGTTRFRATTQLGFPPLSKKA******M***********************************************************************************************KAQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAG
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESLQVTRLLSWKSFLNTAAKAGTTRFRATTQLGFPPLSKKATKNGFLMIRRSFTNASTGSGSSSGGTDAVSGNISSHDSSSPPVEDEKDENKPGYLLGQEKDGSGLVIGFHFIPPSGDHEVIDSSKDIDGYGVKKIEDVEGEDKAQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query542 2.2.26 [Sep-21-2011]
Q9FNF2 652 Starch synthase 1, chloro yes no 0.940 0.782 0.632 0.0
P93568 641 Soluble starch synthase 1 N/A no 0.955 0.808 0.642 0.0
Q0DEC8 641 Soluble starch synthase 1 yes no 0.750 0.634 0.737 0.0
A2Y9M4 641 Soluble starch synthase 1 N/A no 0.750 0.634 0.735 0.0
Q43654 647 Starch synthase 1, chloro N/A no 0.745 0.624 0.730 0.0
Q9MAC8 792 Starch synthase 2, chloro no no 0.686 0.469 0.488 1e-103
Q43847 767 Granule-bound starch synt N/A no 0.686 0.485 0.476 3e-96
Q6Z2T8 694 Soluble starch synthase 2 no no 0.686 0.536 0.465 6e-96
Q43093 752 Granule-bound starch synt N/A no 0.686 0.494 0.453 7e-95
Q7XE48 749 Soluble starch synthase 2 no no 0.686 0.496 0.465 1e-94
>sp|Q9FNF2|SSY1_ARATH Starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/564 (63%), Positives = 425/564 (75%), Gaps = 54/564 (9%)

Query: 1   MESLQVTRLLSWKSFLNTAAKAGTTRFRATTQLGFPPLSKKATKNGFLMIRRSFTNASTG 60
           M SLQ++  + ++ F+          FR    LGFP              RR F   S G
Sbjct: 1   MASLQISGSVKFEPFVGFNR---IRHFRPIASLGFP------------RFRRRF---SIG 42

Query: 61  SGSSSGGTDAVSGNISSHDSSSPPVEDEKDENKPGYLLGQEKDGSGLVIGFHFIPPSGDH 120
                  + + SG             D ++ ++  ++   E+DGSG V+GF   PP GD 
Sbjct: 43  RSLLLRRSSSFSG-------------DSRESDEERFITDAERDGSGSVLGFQLTPP-GDQ 88

Query: 121 EVIDSS-----------KDID-----GYGVKKIEDVE------GEDKAQTRVSYNIVFVT 158
           + + +S           + ID      +GV     VE      G    +  V  N+VFVT
Sbjct: 89  QTVSTSTGEITHHEEKKEAIDQIVMADFGVPGNRAVEEGAAEVGIPSGKAEVVNNLVFVT 148

Query: 159 AEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKIC 218
           +EAAPYSKTGGLGDVCGSLP+ALA RGHRVMV+SPRY NGTAAD+N+  AKDLG  + + 
Sbjct: 149 SEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRYLNGTAADKNYARAKDLGIRVTVN 208

Query: 219 CFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAP 278
           CFGG QE++F+HEYR+GVDWVFVDH SYHRPGNPYGD  GAFGDNQFR+TLLC+AACEAP
Sbjct: 209 CFGGSQEVSFYHEYRDGVDWVFVDHKSYHRPGNPYGDSKGAFGDNQFRFTLLCHAACEAP 268

Query: 279 LVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPA 338
           LVLPLGGFTYGEK +FLVNDWHAGLVP+LLA+KYRP+GVYKDARSIL+IHNL+HQGVEPA
Sbjct: 269 LVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPA 328

Query: 339 ATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEIT 398
           ATY NLGLPSEWYGA+ WVFPTWARTHALDTGEAVNVLKGAIVT+DR++TVS+GY+WEIT
Sbjct: 329 ATYTNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEIT 388

Query: 399 TVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQK 458
           TVEGGYGL ++LSSRKSV+NGITNGI++ EWNPS+DEHI  HYS DD+S K++CK+ALQK
Sbjct: 389 TVEGGYGLQDLLSSRKSVINGITNGINVDEWNPSTDEHIPFHYSADDVSEKIKCKMALQK 448

Query: 459 ELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTE 518
           ELGLPIRP+CP+IGFIGRLDYQKGIDLI+ A P+++ DDIQFVMLGSGDP++ESWMR  E
Sbjct: 449 ELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKYESWMRSME 508

Query: 519 ATYKDKYRGWVGFNVPISHRITAG 542
            TY+DK+RGWVGFNVPISHRITAG
Sbjct: 509 ETYRDKFRGWVGFNVPISHRITAG 532

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 1
>sp|P93568|SSY1_SOLTU Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q0DEC8|SSY1_ORYSJ Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1 Back     alignment and function description
>sp|A2Y9M4|SSY1_ORYSI Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1 Back     alignment and function description
>sp|Q43654|SSY1_WHEAT Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2 Back     alignment and function description
>sp|Q9MAC8|SSY2_ARATH Starch synthase 2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS2 PE=2 SV=1 Back     alignment and function description
>sp|Q43847|SSY2_SOLTU Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3 Back     alignment and function description
>sp|Q6Z2T8|SSY22_ORYSJ Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2 Back     alignment and function description
>sp|Q43093|SSG2_PEA Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query542
224135151 649 predicted protein [Populus trichocarpa] 0.926 0.773 0.744 0.0
157169067633 starch synthase isoform I [Manihot escul 0.942 0.807 0.681 0.0
356509243 651 PREDICTED: soluble starch synthase, chlo 0.920 0.766 0.681 0.0
225455364633 PREDICTED: soluble starch synthase, chlo 0.821 0.703 0.755 0.0
302143910568 unnamed protein product [Vitis vinifera] 0.821 0.783 0.755 0.0
297808439 655 hypothetical protein ARALYDRAFT_489289 [ 0.904 0.748 0.661 0.0
15237934 652 soluble starch synthase [Arabidopsis tha 0.940 0.782 0.632 0.0
356518639 647 PREDICTED: soluble starch synthase, chlo 0.928 0.777 0.676 0.0
357463955 655 Soluble starch synthase [Medicago trunca 0.959 0.793 0.658 0.0
47077341 645 starch synthase I precursor [Phaseolus v 0.948 0.796 0.651 0.0
>gi|224135151|ref|XP_002321996.1| predicted protein [Populus trichocarpa] gi|222868992|gb|EEF06123.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/524 (74%), Positives = 442/524 (84%), Gaps = 22/524 (4%)

Query: 24  TTR--FRATTQLGFPPLSKKATKNGFLMIRRSFTNASTGSGSSSGGTDAVSGNISSHDSS 81
           TTR  FR   QLGF    ++  K G L+I RS        G S  G ++  GN +     
Sbjct: 23  TTRVGFRPRAQLGFGCFVRERYKYGNLVIARS--------GRSEVG-NSKDGNFA----- 68

Query: 82  SPPVEDEKDENKPGYLLGQEKDGSGLVIGFHFIPPSG---DHEVIDSSKDIDGYGVKKIE 138
              VE+EK E + G +LG E+D SG +IGF+ IPPSG      V++S +D    G ++ E
Sbjct: 69  ---VENEKKEKRGGLILGPERDSSGSIIGFNLIPPSGMDISFTVLESHEDATTGGTEEAE 125

Query: 139 DVEGEDKAQTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNG 198
           D+EG +K QTRV+YNIVFVT+EAAPYSKTGGLGDVCGSLP+ LAARGHRVMVVSPRY +G
Sbjct: 126 DIEGVEKVQTRVTYNIVFVTSEAAPYSKTGGLGDVCGSLPIVLAARGHRVMVVSPRYLHG 185

Query: 199 TAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDING 258
           + AD+NF  A +L C +K+ CFGGEQE+AFFHEYREGVDWVFVDHPSYHRPGNPYGD  G
Sbjct: 186 SPADKNFAGASELDCHIKVYCFGGEQEVAFFHEYREGVDWVFVDHPSYHRPGNPYGDSRG 245

Query: 259 AFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVY 318
           AFGDNQFR+ LLC+AACEAPLVLPLGG+TYGEKC+FLVNDWHAGLVPVLLASKYRP+GVY
Sbjct: 246 AFGDNQFRFALLCHAACEAPLVLPLGGYTYGEKCLFLVNDWHAGLVPVLLASKYRPYGVY 305

Query: 319 KDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKG 378
           KDAR+ILVIHNL+HQGVEPAATY NLGLPSEWYGAL WVFPTWARTHALDTGEAVN+LKG
Sbjct: 306 KDARTILVIHNLAHQGVEPAATYTNLGLPSEWYGALGWVFPTWARTHALDTGEAVNLLKG 365

Query: 379 AIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIA 438
           AIVT DR+LTVSKGY+WEITTVEGGYGLHE+LSSR+SVLNGITNGIDI EWNPSSD+HIA
Sbjct: 366 AIVTVDRILTVSKGYAWEITTVEGGYGLHELLSSRRSVLNGITNGIDIYEWNPSSDKHIA 425

Query: 439 SHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDI 498
           S+YS+DDLSGKVQCKIALQKELGLPI+PDCPLIGFIGRLDYQKGIDLIR A PE+L DD+
Sbjct: 426 SNYSVDDLSGKVQCKIALQKELGLPIKPDCPLIGFIGRLDYQKGIDLIRWATPELLEDDV 485

Query: 499 QFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAG 542
           QFVMLGSGDP +E WMR TE+TYKDK+RGWVGFN+PISH+ITAG
Sbjct: 486 QFVMLGSGDPLYEDWMRATESTYKDKFRGWVGFNIPISHKITAG 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|157169067|gb|ABV25893.1| starch synthase isoform I [Manihot esculenta] Back     alignment and taxonomy information
>gi|356509243|ref|XP_003523360.1| PREDICTED: soluble starch synthase, chloroplastic/amyloplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|225455364|ref|XP_002277372.1| PREDICTED: soluble starch synthase, chloroplastic/amyloplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143910|emb|CBI23015.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297808439|ref|XP_002872103.1| hypothetical protein ARALYDRAFT_489289 [Arabidopsis lyrata subsp. lyrata] gi|297317940|gb|EFH48362.1| hypothetical protein ARALYDRAFT_489289 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15237934|ref|NP_197818.1| soluble starch synthase [Arabidopsis thaliana] gi|334187896|ref|NP_001190378.1| soluble starch synthase [Arabidopsis thaliana] gi|29337131|sp|Q9FNF2.1|SSY1_ARATH RecName: Full=Starch synthase 1, chloroplastic/amyloplastic; Short=AtSS1; Short=SSS; AltName: Full=Soluble starch synthase I; Flags: Precursor gi|10177090|dbj|BAB10396.1| soluble starch synthase [Arabidopsis thaliana] gi|22135791|gb|AAM91082.1| AT5g24300/MOP9_12 [Arabidopsis thaliana] gi|110742056|dbj|BAE98960.1| soluble starch synthase [Arabidopsis thaliana] gi|332005899|gb|AED93282.1| soluble starch synthase [Arabidopsis thaliana] gi|332005900|gb|AED93283.1| soluble starch synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356518639|ref|XP_003527986.1| PREDICTED: soluble starch synthase, chloroplastic/amyloplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|357463955|ref|XP_003602259.1| Soluble starch synthase [Medicago truncatula] gi|355491307|gb|AES72510.1| Soluble starch synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|47077341|dbj|BAD18845.1| starch synthase I precursor [Phaseolus vulgaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query542
TAIR|locus:2169749 652 SS1 "starch synthase 1" [Arabi 0.968 0.805 0.637 4.3e-189
TAIR|locus:2102102 792 SS2 "starch synthase 2" [Arabi 0.686 0.469 0.491 7.7e-97
UNIPROTKB|Q42968 609 WAXY "Granule-bound starch syn 0.699 0.622 0.412 2.2e-73
TAIR|locus:2037950 610 GBSS1 "granule bound starch sy 0.745 0.662 0.394 1.4e-71
TIGR_CMR|GSU_1023 501 GSU_1023 "glycogen synthase" [ 0.440 0.477 0.412 1.9e-44
TIGR_CMR|GSU_3257 484 GSU_3257 "glycogen synthase" [ 0.433 0.485 0.373 3.4e-38
TIGR_CMR|BA_5120 476 BA_5120 "glycogen synthase" [B 0.435 0.495 0.353 6.3e-37
UNIPROTKB|P0A6U8 477 glgA [Escherichia coli K-12 (t 0.422 0.480 0.338 8.7e-31
UNIPROTKB|Q9KRB6 484 glgA "Glycogen synthase" [Vibr 0.464 0.520 0.324 1.7e-29
TIGR_CMR|VC_1726 484 VC_1726 "glycogen synthase" [V 0.464 0.520 0.324 1.7e-29
TAIR|locus:2169749 SS1 "starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1833 (650.3 bits), Expect = 4.3e-189, P = 4.3e-189
 Identities = 350/549 (63%), Positives = 424/549 (77%)

Query:     1 MESLQVTRLLSWKSFLNTAAKAGTTRFRATTQLGFPPLSKKATKNGFLMIRRS--FTNAX 58
             M SLQ++  + ++ F+          FR    LGFP   ++ +    L++RRS  F+   
Sbjct:     1 MASLQISGSVKFEPFVGFNR---IRHFRPIASLGFPRFRRRFSIGRSLLLRRSSSFSGDS 57

Query:    59 XXXXXXXXXXDAV---SGNISSHDSSSPPVEDEKDENKPGYLLGQE--KDGSGLVIGFHF 113
                       DA    SG++     + PP + +      G +   E  K+    ++   F
Sbjct:    58 RESDEERFITDAERDGSGSVLGFQLT-PPGDQQTVSTSTGEITHHEEKKEAIDQIVMADF 116

Query:   114 IPPSGDHEVIDSSKDIDGYGVKKIEDVEGEDKAQTRVSYNIVFVTAEAAPYSKTGGLGDV 173
               P G+  V + + ++   G+          KA+  V  N+VFVT+EAAPYSKTGGLGDV
Sbjct:   117 GVP-GNRAVEEGAAEV---GIPS-------GKAE--VVNNLVFVTSEAAPYSKTGGLGDV 163

Query:   174 CGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYR 233
             CGSLP+ALA RGHRVMV+SPRY NGTAAD+N+  AKDLG  + + CFGG QE++F+HEYR
Sbjct:   164 CGSLPIALAGRGHRVMVISPRYLNGTAADKNYARAKDLGIRVTVNCFGGSQEVSFYHEYR 223

Query:   234 EGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCI 293
             +GVDWVFVDH SYHRPGNPYGD  GAFGDNQFR+TLLC+AACEAPLVLPLGGFTYGEK +
Sbjct:   224 DGVDWVFVDHKSYHRPGNPYGDSKGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKSL 283

Query:   294 FLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGA 353
             FLVNDWHAGLVP+LLA+KYRP+GVYKDARSIL+IHNL+HQGVEPAATY NLGLPSEWYGA
Sbjct:   284 FLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIHNLAHQGVEPAATYTNLGLPSEWYGA 343

Query:   354 LEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSR 413
             + WVFPTWARTHALDTGEAVNVLKGAIVT+DR++TVS+GY+WEITTVEGGYGL ++LSSR
Sbjct:   344 VGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIITVSQGYAWEITTVEGGYGLQDLLSSR 403

Query:   414 KSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCPLIGF 473
             KSV+NGITNGI++ EWNPS+DEHI  HYS DD+S K++CK+ALQKELGLPIRP+CP+IGF
Sbjct:   404 KSVINGITNGINVDEWNPSTDEHIPFHYSADDVSEKIKCKMALQKELGLPIRPECPMIGF 463

Query:   474 IGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNV 533
             IGRLDYQKGIDLI+ A P+++ DDIQFVMLGSGDP++ESWMR  E TY+DK+RGWVGFNV
Sbjct:   464 IGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGSGDPKYESWMRSMEETYRDKFRGWVGFNV 523

Query:   534 PISHRITAG 542
             PISHRITAG
Sbjct:   524 PISHRITAG 532
GO:0005739 "mitochondrion" evidence=ISM
GO:0009058 "biosynthetic process" evidence=IEA
GO:0009250 "glucan biosynthetic process" evidence=IEA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0009011 "starch synthase activity" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0010021 "amylopectin biosynthetic process" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0001666 "response to hypoxia" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:2102102 SS2 "starch synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q42968 WAXY "Granule-bound starch synthase 1, chloroplastic/amyloplastic" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2037950 GBSS1 "granule bound starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1023 GSU_1023 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3257 GSU_3257 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5120 BA_5120 "glycogen synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6U8 glgA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRB6 glgA "Glycogen synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1726 VC_1726 "glycogen synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FNF2SSY1_ARATH2, ., 4, ., 1, ., 2, 10.63290.94090.7822yesno
Q0DEC8SSY1_ORYSJ2, ., 4, ., 1, ., 2, 10.73770.75090.6349yesno
P93568SSY1_SOLTU2, ., 4, ., 1, ., 2, 10.64220.95570.8081N/Ano
Q43654SSY1_WHEAT2, ., 4, ., 1, ., 2, 10.73080.74530.6244N/Ano
A2Y9M4SSY1_ORYSI2, ., 4, ., 1, ., 2, 10.73520.75090.6349N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.4.1.210.946
3rd Layer2.4.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.361.1
hypothetical protein (586 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_LG_XIV000240
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (445 aa)
• •  •• 0.970
gw1.V.1420.1
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (475 aa)
• •  •• 0.967
eugene3.00141188
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (523 aa)
• •  •• 0.964
estExt_Genewise1_v1.C_LG_IV2986
hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (819 aa)
• •  •• 0.962
gw1.170.63.1
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27) (428 aa)
• •  •• 0.961
fgenesh4_pg.C_LG_V001651
SubName- Full=Starch branching enzyme I; (701 aa)
•  • •• 0.961
gw1.VII.320.1
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27) (434 aa)
• •  •• 0.961
estExt_fgenesh4_pg.C_LG_IX1158
hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa)
• •  •• 0.961
estExt_fgenesh4_pm.C_LG_II0158
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (528 aa)
• •  •• 0.960
estExt_Genewise1_v1.C_LG_VIII1252
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (528 aa)
• •  •• 0.960

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query542
cd03791 476 cd03791, GT1_Glycogen_synthase_DULL1_like, This fa 1e-147
TIGR02095 473 TIGR02095, glgA, glycogen/starch synthase, ADP-glu 1e-131
PRK00654 466 PRK00654, glgA, glycogen synthase; Provisional 1e-115
COG0297 487 COG0297, GlgA, Glycogen synthase [Carbohydrate tra 3e-94
pfam08323234 pfam08323, Glyco_transf_5, Starch synthase catalyt 2e-75
PRK14099 485 PRK14099, PRK14099, glycogen synthase; Provisional 3e-67
PRK14098 489 PRK14098, PRK14098, glycogen synthase; Provisional 5e-50
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 9e-41
PLN02316 1036 PLN02316, PLN02316, synthase/transferase 1e-31
cd03801374 cd03801, GT1_YqgM_like, This family is most closel 1e-08
cd03808359 cd03808, GT1_cap1E_like, This family is most close 4e-05
cd03798377 cd03798, GT1_wlbH_like, This family is most closel 2e-04
cd03817374 cd03817, GT1_UGDG_like, This family is most closel 2e-04
COG0438 381 COG0438, RfaG, Glycosyltransferase [Cell envelope 5e-04
cd03807365 cd03807, GT1_WbnK_like, This family is most closel 7e-04
pfam00534158 pfam00534, Glycos_transf_1, Glycosyl transferases 8e-04
cd03811353 cd03811, GT1_WabH_like, This family is most closel 0.001
cd03794394 cd03794, GT1_wbuB_like, This family is most closel 0.002
cd03821 375 cd03821, GT1_Bme6_like, This family is most closel 0.004
>gnl|CDD|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information 
 Score =  431 bits (1111), Expect = e-147
 Identities = 159/390 (40%), Positives = 214/390 (54%), Gaps = 20/390 (5%)

Query: 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 212
            ++FV +E AP++KTGGLGDV G+LP ALA  GH V V+ P+Y  G   DE       L 
Sbjct: 1   KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKY--GRILDELRGQLLVLR 58

Query: 213 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNPYGDINGAFGDNQFRYTLLCY 272
               +   G  + +  F    +GV   F+D+P Y      Y D    + DN  R+ L   
Sbjct: 59  LFG-VPVGGRPEYVGVFELPVDGVPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSR 117

Query: 273 AACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSH 332
           AA E    L        +  I   +DWH GLVP LL  KY     +K+ +++  IHNL++
Sbjct: 118 AALELLRRL------GWKPDIIHCHDWHTGLVPALLKEKYADPF-FKNIKTVFTIHNLAY 170

Query: 333 QGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKG 392
           QGV P    ++LGLP E                 L+    VN LK  IV AD + TVS  
Sbjct: 171 QGVFPLEALEDLGLPWEEL----------FHIDGLEFYGQVNFLKAGIVYADAVTTVSPT 220

Query: 393 YSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQC 452
           Y+ EI T E G GL  +L +R   L+GI NGID   WNP++D H+ ++YS DDL GK + 
Sbjct: 221 YAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAEN 280

Query: 453 KIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFES 512
           K ALQ+ELGLP+ PD PL GF+GRL  QKGIDL+  A PE+L    Q V+LGSGDP++E 
Sbjct: 281 KAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEE 340

Query: 513 WMRDTEATYKDKYRGWVGFNVPISHRITAG 542
            +R+  A Y  +    +G++  ++H I AG
Sbjct: 341 ALRELAARYPGRVAVLIGYDEALAHLIYAG 370

Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. Length = 476
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type Back     alignment and domain information
>gnl|CDD|234809 PRK00654, glgA, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|219794 pfam08323, Glyco_transf_5, Starch synthase catalytic domain Back     alignment and domain information
>gnl|CDD|237610 PRK14099, PRK14099, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|172588 PRK14098, PRK14098, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase Back     alignment and domain information
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1 Back     alignment and domain information
>gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 542
PLN02939 977 transferase, transferring glycosyl groups 100.0
PRK14099 485 glycogen synthase; Provisional 100.0
PRK14098 489 glycogen synthase; Provisional 100.0
TIGR02095 473 glgA glycogen/starch synthases, ADP-glucose type. 100.0
PRK00654 466 glgA glycogen synthase; Provisional 100.0
COG0297 487 GlgA Glycogen synthase [Carbohydrate transport and 100.0
cd03791 476 GT1_Glycogen_synthase_DULL1_like This family is mo 100.0
PLN02316 1036 synthase/transferase 100.0
PF08323245 Glyco_transf_5: Starch synthase catalytic domain; 100.0
TIGR02094 601 more_P_ylases alpha-glucan phosphorylases. This fa 99.97
cd04299 778 GT1_Glycogen_Phosphorylase_like This family is mos 99.94
PRK10307 412 putative glycosyl transferase; Provisional 99.93
PLN02871 465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 99.9
TIGR03449 405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 99.9
TIGR02472 439 sucr_P_syn_N sucrose-phosphate synthase, putative, 99.9
cd03796 398 GT1_PIG-A_like This family is most closely related 99.9
TIGR02149 388 glgA_Coryne glycogen synthase, Corynebacterium fam 99.89
TIGR02470 784 sucr_synth sucrose synthase. This model represents 99.88
cd04962371 GT1_like_5 This family is most closely related to 99.87
TIGR02468 1050 sucrsPsyn_pln sucrose phosphate synthase/possible 99.86
cd03819355 GT1_WavL_like This family is most closely related 99.85
PLN02846 462 digalactosyldiacylglycerol synthase 99.84
PRK15484 380 lipopolysaccharide 1,2-N-acetylglucosaminetransfer 99.83
KOG1111 426 consensus N-acetylglucosaminyltransferase complex, 99.83
cd03812358 GT1_CapH_like This family is most closely related 99.82
TIGR03088 374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 99.82
cd04951360 GT1_WbdM_like This family is most closely related 99.82
PLN00142 815 sucrose synthase 99.82
cd03805392 GT1_ALG2_like This family is most closely related 99.82
cd03800398 GT1_Sucrose_synthase This family is most closely r 99.82
cd03816415 GT1_ALG1_like This family is most closely related 99.81
cd03802335 GT1_AviGT4_like This family is most closely relate 99.81
PRK15427 406 colanic acid biosynthesis glycosyltransferase WcaL 99.81
cd03818396 GT1_ExpC_like This family is most closely related 99.8
cd04955363 GT1_like_6 This family is most closely related to 99.8
cd03795357 GT1_like_4 This family is most closely related to 99.78
cd03794394 GT1_wbuB_like This family is most closely related 99.77
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.77
cd03807365 GT1_WbnK_like This family is most closely related 99.76
cd03817374 GT1_UGDG_like This family is most closely related 99.76
cd03792372 GT1_Trehalose_phosphorylase Trehalose phosphorylas 99.76
cd03821375 GT1_Bme6_like This family is most closely related 99.76
PRK09922 359 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D 99.74
cd05844 367 GT1_like_7 Glycosyltransferases catalyze the trans 99.74
cd03799355 GT1_amsK_like This is a family of GT1 glycosyltran 99.73
cd03814364 GT1_like_2 This family is most closely related to 99.73
cd03793 590 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, 99.72
PRK10125405 putative glycosyl transferase; Provisional 99.72
cd03823359 GT1_ExpE7_like This family is most closely related 99.72
cd03809365 GT1_mtfB_like This family is most closely related 99.71
PLN02275371 transferase, transferring glycosyl groups 99.71
cd03820348 GT1_amsD_like This family is most closely related 99.69
cd03801374 GT1_YqgM_like This family is most closely related 99.69
cd03808359 GT1_cap1E_like This family is most closely related 99.68
PRK00726 357 murG undecaprenyldiphospho-muramoylpentapeptide be 99.67
cd03806419 GT1_ALG11_like This family is most closely related 99.66
cd03811353 GT1_WabH_like This family is most closely related 99.66
cd03822366 GT1_ecORF704_like This family is most closely rela 99.66
PRK15490 578 Vi polysaccharide biosynthesis protein TviE; Provi 99.66
cd03825365 GT1_wcfI_like This family is most closely related 99.65
cd03798377 GT1_wlbH_like This family is most closely related 99.64
TIGR03087397 stp1 sugar transferase, PEP-CTERM/EpsH1 system ass 99.62
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 99.6
PLN02501 794 digalactosyldiacylglycerol synthase 99.59
cd03813 475 GT1_like_3 This family is most closely related to 99.59
PLN02949 463 transferase, transferring glycosyl groups 99.56
PF13439177 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 99.51
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 99.51
PF13579160 Glyco_trans_4_4: Glycosyl transferase 4-like domai 99.5
cd03804351 GT1_wbaZ_like This family is most closely related 99.43
PRK13609 380 diacylglycerol glucosyltransferase; Provisional 99.4
cd03788460 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a 99.32
TIGR02918 500 accessory Sec system glycosylation protein GtfA. M 99.26
cd04946407 GT1_AmsK_like This family is most closely related 99.24
PLN02605382 monogalactosyldiacylglycerol synthase 99.22
TIGR02400456 trehalose_OtsA alpha,alpha-trehalose-phosphate syn 99.18
PF09314185 DUF1972: Domain of unknown function (DUF1972); Int 99.17
cd04949372 GT1_gtfA_like This family is most closely related 99.14
PRK05749 425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 99.09
PF05693 633 Glycogen_syn: Glycogen synthase; InterPro: IPR0086 99.08
cd03786363 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th 99.07
PHA01633 335 putative glycosyl transferase group 1 99.05
PRK13608 391 diacylglycerol glucosyltransferase; Provisional 99.01
PRK14501 726 putative bifunctional trehalose-6-phosphate syntha 98.91
TIGR02398 487 gluc_glyc_Psyn glucosylglycerol-phosphate synthase 98.89
PLN03063 797 alpha,alpha-trehalose-phosphate synthase (UDP-form 98.87
PHA01630 331 putative group 1 glycosyl transferase 98.87
cd04950373 GT1_like_1 Glycosyltransferases catalyze the trans 98.85
PF13477139 Glyco_trans_4_2: Glycosyl transferase 4-like 98.79
PRK00025 380 lpxB lipid-A-disaccharide synthase; Reviewed 98.78
cd01635229 Glycosyltransferase_GTB_type Glycosyltransferases 98.75
TIGR00236365 wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras 98.6
PRK09814 333 beta-1,6-galactofuranosyltransferase; Provisional 98.47
TIGR00215 385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 98.31
PRK14986 815 glycogen phosphorylase; Provisional 98.13
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 98.12
COG0058 750 GlgP Glucan phosphorylase [Carbohydrate transport 98.1
PLN03064 934 alpha,alpha-trehalose-phosphate synthase (UDP-form 97.94
PF00534172 Glycos_transf_1: Glycosyl transferases group 1; In 97.91
cd04300 797 GT1_Glycogen_Phosphorylase This is a family of oli 97.56
PF00862550 Sucrose_synth: Sucrose synthase; InterPro: IPR0003 97.53
TIGR02093 794 P_ylase glycogen/starch/alpha-glucan phosphorylase 97.5
KOG0853 495 consensus Glycosyltransferase [Cell wall/membrane/ 97.48
PRK10117 474 trehalose-6-phosphate synthase; Provisional 97.4
PRK14985 798 maltodextrin phosphorylase; Provisional 97.37
KOG1387 465 consensus Glycosyltransferase [Cell wall/membrane/ 97.28
KOG2941 444 consensus Beta-1,4-mannosyltransferase [Posttransl 97.27
KOG3742 692 consensus Glycogen synthase [Carbohydrate transpor 97.16
PLN02205 854 alpha,alpha-trehalose-phosphate synthase [UDP-form 97.1
COG0707 357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 96.99
PF00982 474 Glyco_transf_20: Glycosyltransferase family 20; In 96.95
COG0380 486 OtsA Trehalose-6-phosphate synthase [Carbohydrate 96.95
PF12000171 Glyco_trans_4_3: Gkycosyl transferase family 4 gro 96.93
PF00343 713 Phosphorylase: Carbohydrate phosphorylase; InterPr 96.7
PF13692135 Glyco_trans_1_4: Glycosyl transferases group 1; PD 96.59
COG0438 381 RfaG Glycosyltransferase [Cell envelope biogenesis 96.45
PF04007335 DUF354: Protein of unknown function (DUF354); Inte 95.76
PF11997268 DUF3492: Domain of unknown function (DUF3492); Int 95.56
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 94.36
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 93.94
TIGR03713 519 acc_sec_asp1 accessory Sec system protein Asp1. Th 93.9
PF0828890 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IP 93.5
TIGR03568365 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, 87.46
PF02350346 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; 85.99
PF01975196 SurE: Survival protein SurE; InterPro: IPR002828 T 82.35
TIGR02919438 accessory Sec system glycosyltransferase GtfB. Mem 81.28
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information 
Probab=100.00  E-value=1.1e-50  Score=452.92  Aligned_cols=372  Identities=32%  Similarity=0.481  Sum_probs=299.5

Q ss_pred             cCCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcc-cCceeEEeecCCcee
Q 009139          147 QTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKD-LGCCMKICCFGGEQE  225 (542)
Q Consensus       147 ~~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~-~~~~~~v~~~g~~~~  225 (542)
                      .++++|||+||++|+.|++++||++.++..|+++|+++||+|.||+|.|......  .. ..+. ......+...|....
T Consensus       477 ~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~--~~-~~~~~~~~~~~~~~~g~~~~  553 (977)
T PLN02939        477 GTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYD--QI-RNLKVLDVVVESYFDGNLFK  553 (977)
T ss_pred             CCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChh--hh-hcccccceEEEEeecCceeE
Confidence            4578899999999999999999999999999999999999999999999754210  00 0000 011111222233334


Q ss_pred             EEEEEeeeCCeEEEEEcC--C-CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchh
Q 009139          226 IAFFHEYREGVDWVFVDH--P-SYHRPGNPYGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAG  302 (542)
Q Consensus       226 ~~~~~~~~~gv~v~~i~~--p-~~~~~~~~y~~~~~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~  302 (542)
                      ++++....+||++|+|++  | .|+.++.+|+     ++|+..||.+|++++++++..+   +   ++|||||+|+|+++
T Consensus       554 ~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg-----~~Dn~~RF~~FsrAaLe~~~~~---~---~~PDIIH~HDW~Ta  622 (977)
T PLN02939        554 NKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYG-----EHDDFKRFSYFSRAALELLYQS---G---KKPDIIHCHDWQTA  622 (977)
T ss_pred             EEEEEEEECCeeEEEEecCCchhccCCCCCCC-----CccHHHHHHHHHHHHHHHHHhc---C---CCCCEEEECCccHH
Confidence            678888889999999985  3 2777778887     4699999999999999987654   2   48999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHh
Q 009139          303 LVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVT  382 (542)
Q Consensus       303 ~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~  382 (542)
                      +++.++...+...+ +.++|+|+|+||+.|+|.++...+..+|++..++.......        -.++..+|+++.++.+
T Consensus       623 LV~pll~~~y~~~~-~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le--------~~~~~~iN~LK~GIv~  693 (977)
T PLN02939        623 FVAPLYWDLYAPKG-FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQ--------DNAHGRINVVKGAIVY  693 (977)
T ss_pred             HHHHHHHHHHhhcc-CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhh--------hccCCchHHHHHHHHh
Confidence            98555444333222 35789999999999999998877777888876653111100        0124568999999999


Q ss_pred             cCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCC
Q 009139          383 ADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGL  462 (542)
Q Consensus       383 ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl  462 (542)
                      ||.|+|||+.|++++.. .+|+||+..+.....|+.+|+||||++.|.|.+++.++.+|+++++.+|..+|..+|+++|+
T Consensus       694 AD~VtTVSptYA~EI~t-e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL  772 (977)
T PLN02939        694 SNIVTTVSPTYAQEVRS-EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGL  772 (977)
T ss_pred             CCeeEeeeHHHHHHHHH-HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCC
Confidence            99999999999999988 77899999888889999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCCCEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCc-hhhHHHHHHHHHHcC--CCEEEEccCChhhhhh
Q 009139          463 PIR-PDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGD-PQFESWMRDTEATYK--DKYRGWVGFNVPISHR  538 (542)
Q Consensus       463 ~~~-~~~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~-~~~~~~l~~la~~~~--~~v~~~~Gy~~~l~~~  538 (542)
                      +.+ ++.++|+||||+.++||++.|++|+..+.+.+++|+|+|+|+ +.+++.+++++++++  ++|.+..+|++.+++.
T Consensus       773 ~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~  852 (977)
T PLN02939        773 SSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHS  852 (977)
T ss_pred             CcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHH
Confidence            742 467999999999999999999999998876789999999995 456788999998874  4676555678888888


Q ss_pred             hhcC
Q 009139          539 ITAG  542 (542)
Q Consensus       539 ~~A~  542 (542)
                      ++|+
T Consensus       853 IYAa  856 (977)
T PLN02939        853 IYAA  856 (977)
T ss_pred             HHHh
Confidence            8775

>PRK14099 glycogen synthase; Provisional Back     alignment and domain information
>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 Back     alignment and domain information
>TIGR02094 more_P_ylases alpha-glucan phosphorylases Back     alignment and domain information
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>TIGR02470 sucr_synth sucrose synthase Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Back     alignment and domain information
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>PLN00142 sucrose synthase Back     alignment and domain information
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional Back     alignment and domain information
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis Back     alignment and domain information
>PRK10125 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02275 transferase, transferring glycosyl groups Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>PLN02501 digalactosyldiacylglycerol synthase Back     alignment and domain information
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02949 transferase, transferring glycosyl groups Back     alignment and domain information
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A Back     alignment and domain information
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor Back     alignment and domain information
>TIGR02918 accessory Sec system glycosylation protein GtfA Back     alignment and domain information
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] Back     alignment and domain information
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases Back     alignment and domain information
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 Back     alignment and domain information
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) Back     alignment and domain information
>PHA01633 putative glycosyl transferase group 1 Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional Back     alignment and domain information
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase Back     alignment and domain information
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Back     alignment and domain information
>PHA01630 putative group 1 glycosyl transferase Back     alignment and domain information
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase Back     alignment and domain information
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>PRK14986 glycogen phosphorylase; Provisional Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Back     alignment and domain information
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases Back     alignment and domain information
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2 Back     alignment and domain information
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases Back     alignment and domain information
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PRK10117 trehalose-6-phosphate synthase; Provisional Back     alignment and domain information
>PRK14985 maltodextrin phosphorylase; Provisional Back     alignment and domain information
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming] Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria Back     alignment and domain information
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A Back     alignment and domain information
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1 Back     alignment and domain information
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins Back     alignment and domain information
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing Back     alignment and domain information
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5 Back     alignment and domain information
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family Back     alignment and domain information
>TIGR02919 accessory Sec system glycosyltransferase GtfB Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query542
3vue_A 536 Crystal Structure Of Rice Granule Bound Starch Synt 1e-73
3d1j_A 477 Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408 6e-47
3cop_A 485 Crystal Structure Of E.Coli Gs Mutant E377a In Comp 2e-46
2qzs_A 485 Crystal Structure Of Wild-Type E.Coli Gs In Complex 2e-46
1rzu_A 485 Crystal Structure Of The Glycogen Synthase From A. 9e-42
1rzv_A 485 Crystal Structure Of The Glycogen Synthase From Agr 5e-40
3fro_A 439 Crystal Structure Of Pyrococcus Abyssi Glycogen Syn 1e-08
3l01_A428 Crystal Structure Of Monomeric Glycogen Synthase Fr 1e-08
2bis_A 440 Structure Of Glycogen Synthase From Pyrococcus Abys 1e-08
2bfw_A200 Structure Of The C Domain Of Glycogen Synthase From 5e-05
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain Length = 536 Back     alignment and structure 
Iteration: 1

 Score =  274 bits (700), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 168/407 (41%), Positives = 236/407 (57%), Gaps = 33/407 (8%)
Query: 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 212
           N+VFV AE AP+SKTGGLGDV G LP A+AA GHRVMV+SPRY       + +  A D  
Sbjct: 11  NVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRY-------DQYKDAWDTS 63
Query: 213 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSY-----HRPGNP-YGDINGA-FGDNQF 265
              +I      + + FFH Y+ GVD VF+DHPS+      + G   YG   G  + DNQ 
Sbjct: 64  VVAEIKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQM 123
Query: 266 RYTLLCYAACEAPLVLPLGGF-----TYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKD 320
           R++LLC AA EAP +L L        TYGE  +F+ NDWH G +   L + Y+P+G+Y++
Sbjct: 124 RFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRN 183
Query: 321 ARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDT---GEAVNVLK 377
           A+    IHN+S+QG      Y  L L   +  + +++          DT   G  +N +K
Sbjct: 184 AKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFI-------DGYDTPVEGRKINWMK 236
Query: 378 GAIVTADRLLTVSKGYSWE-ITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEH 436
             I+ ADR+LTVS  Y+ E I+ +  G  L  I+  R + + GI NG+D++EW+PS D++
Sbjct: 237 AGILEADRVLTVSPYYAEELISGIARGCELDNIM--RLTGITGIVNGMDVSEWDPSKDKY 294
Query: 437 IASHY-SIDDLSGKVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILA 495
           I + Y +   +  K   K ALQ E GLP+    PLI FIGRL+ QKG D++  A PE++ 
Sbjct: 295 ITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQ 354
Query: 496 DDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAG 542
           +D+Q V+LG+G  +FE  ++  E  Y  K R  V FN P++H I AG
Sbjct: 355 EDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAG 401
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s) Length = 477 Back     alignment and structure
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso Length = 485 Back     alignment and structure
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) Length = 485 Back     alignment and structure
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp Length = 485 Back     alignment and structure
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) Length = 485 Back     alignment and structure
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase With Open And Closed Conformations Length = 439 Back     alignment and structure
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From Pyrococcus Abyssi Length = 428 Back     alignment and structure
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi Length = 440 Back     alignment and structure
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From Pyrococcus Abyssi Length = 200 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query542
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 1e-166
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 1e-164
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 1e-124
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 5e-45
3c48_A 438 Predicted glycosyltransferases; retaining glycosyl 2e-12
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 3e-11
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 3e-09
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 6e-09
2jjm_A 394 Glycosyl transferase, group 1 family protein; anth 1e-08
2x6q_A 416 Trehalose-synthase TRET; biosynthetic protein; 2.2 4e-08
2iw1_A 374 Lipopolysaccharide core biosynthesis protein RFAG; 2e-07
3s28_A 816 Sucrose synthase 1; glycosyltransferase, sucrose m 4e-07
2gek_A 406 Phosphatidylinositol mannosyltransferase (PIMA); G 8e-05
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Length = 485 Back     alignment and structure
 Score =  478 bits (1234), Expect = e-166
 Identities = 122/394 (30%), Positives = 182/394 (46%), Gaps = 33/394 (8%)

Query: 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 212
            ++ V +E  P  KTGGL DV G+LP A  A G    V+ P +       +      D  
Sbjct: 2   QVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF------PDIRRGVTDAQ 55

Query: 213 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSY-HRPGNPYGDING-AFGDNQFRYTLL 270
              +   F G   +     +  GV    +D P    RPG+PY D N  A+ DN  R+ LL
Sbjct: 56  VVSRRDTFAGHITL--LFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALL 113

Query: 271 CYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNL 330
            +   E    L           +   +DWHAGL P  LA++ RP      A+S+  +HNL
Sbjct: 114 GWVGAEMASGLDPFW----RPDVVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNL 163

Query: 331 SHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 390
           ++QG+  A    ++ LP  ++             H L+    ++ LK  +  AD +  VS
Sbjct: 164 AYQGMFYAHHMNDIQLPWSFF-----------NIHGLEFNGQISFLKAGLYYADHITAVS 212

Query: 391 KGYSWEITTVEGGYGLHEILSSR--KSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSG 448
             Y+ EIT  +  YG+  +L  R  +  L+G+ NG+D   W+P +D  +AS Y+ D L  
Sbjct: 213 PTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLED 272

Query: 449 KVQCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDP 508
           K + K  LQ  +GL +    PL   + RL  QKG+DL+  A P +L    Q  +LG+GDP
Sbjct: 273 KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDP 332

Query: 509 QFESWMRDTEATYKDKYRGWVGFNVPISHRITAG 542
             +       A Y  +    +G++   SHRI  G
Sbjct: 333 VLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG 366
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Length = 485 Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* 3l01_A* Length = 439 Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Length = 200 Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Length = 438 Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Length = 725 Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Length = 394 Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Length = 499 Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Length = 394 Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Length = 416 Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Length = 374 Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Length = 816 Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Length = 406 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query542
3vue_A 536 GBSS-I, granule-bound starch synthase 1, chloropla 100.0
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 100.0
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 100.0
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 99.97
3c48_A 438 Predicted glycosyltransferases; retaining glycosyl 99.93
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 99.91
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 99.9
3s28_A 816 Sucrose synthase 1; glycosyltransferase, sucrose m 99.89
2iw1_A 374 Lipopolysaccharide core biosynthesis protein RFAG; 99.88
2jjm_A 394 Glycosyl transferase, group 1 family protein; anth 99.88
2gek_A 406 Phosphatidylinositol mannosyltransferase (PIMA); G 99.84
2x6q_A416 Trehalose-synthase TRET; biosynthetic protein; 2.2 99.83
2iuy_A 342 Avigt4, glycosyltransferase; antibiotics, family G 99.83
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 99.82
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 99.81
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 99.81
3oy2_A 413 Glycosyltransferase B736L; rossmann fold, GDP-mann 99.79
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 99.77
1f0k_A 364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 99.67
2hy7_A 406 Glucuronosyltransferase GUMK; glycosyltransferases 99.56
2x0d_A413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 99.53
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.53
1uqt_A 482 Alpha, alpha-trehalose-phosphate synthase; glycosy 99.43
1vgv_A 384 UDP-N-acetylglucosamine 2-epimerase; structural ge 99.43
3beo_A375 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a 99.38
1v4v_A 376 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t 99.29
3t5t_A 496 Putative glycosyltransferase; GTB fold, pseudoglyc 99.22
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 99.05
2xci_A374 KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci 98.89
3otg_A 412 CALG1; calicheamicin, TDP, structural genomics, PS 98.61
3s2u_A 365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 98.42
3dzc_A396 UDP-N-acetylglucosamine 2-epimerase; structural ge 98.35
3rhz_A 339 GTF3, nucleotide sugar synthetase-like protein; gl 98.33
2iyf_A430 OLED, oleandomycin glycosyltransferase; antibiotic 98.21
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 98.21
3qhp_A166 Type 1 capsular polysaccharide biosynthesis prote 98.16
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 98.08
3oti_A398 CALG3; calicheamicin, TDP, structural genomics, PS 98.05
3ot5_A 403 UDP-N-acetylglucosamine 2-epimerase; structural ge 98.05
2f9f_A177 First mannosyl transferase (WBAZ-1); alpha-beta pr 97.95
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 97.86
4hwg_A 385 UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc 97.66
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 97.5
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 97.36
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 96.22
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 95.58
4amg_A400 Snogd; transferase, polyketide biosynthesis, GT1 f 90.52
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 84.62
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 80.66
1rrv_A416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 80.44
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-47  Score=421.34  Aligned_cols=383  Identities=42%  Similarity=0.697  Sum_probs=295.8

Q ss_pred             cCCCceEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeE
Q 009139          147 QTRVSYNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEI  226 (542)
Q Consensus       147 ~~~~~MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~  226 (542)
                      ..+..|||+||++|++|+.++||+++++..|+++|+++||+|.||+|.|+....       ..+......+...++...+
T Consensus         5 ~~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~-------~~~~~~~~~~~~~~~~~~~   77 (536)
T 3vue_A            5 HHHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKD-------AWDTSVVAEIKVADRYERV   77 (536)
T ss_dssp             ---CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTT-------CEEEEEEEEEEETTEEEEE
T ss_pred             cCCCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhh-------hcccceEEEEEecCceEEE
Confidence            345689999999999999999999999999999999999999999999965321       1222223445555666777


Q ss_pred             EEEEeeeCCeEEEEEcCCCCCCC------CCCCCCCC-CCCCChHHHHHHHHHHHHHhccccCCC-----CCCCCCccEE
Q 009139          227 AFFHEYREGVDWVFVDHPSYHRP------GNPYGDIN-GAFGDNQFRYTLLCYAACEAPLVLPLG-----GFTYGEKCIF  294 (542)
Q Consensus       227 ~~~~~~~~gv~v~~i~~p~~~~~------~~~y~~~~-~~~~~~~~r~~~~~~a~~~~~~~l~~~-----~f~~~~pDII  294 (542)
                      ++++...+|+++|++++|.|+.+      ..+|++.. .+|.|+..||.+|+++++++.+.+...     ......+||+
T Consensus        78 ~~~~~~~~gv~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIi  157 (536)
T 3vue_A           78 RFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVF  157 (536)
T ss_dssp             EEEECEETTEEEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEE
T ss_pred             EEEEEEECCceEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEE
Confidence            88888889999999999987654      34676433 368999999999999988876544210     0112467899


Q ss_pred             EECCCchhHHHHHHHHhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHH
Q 009139          295 LVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVN  374 (542)
Q Consensus       295 H~H~~~~~~~~~~l~~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~  374 (542)
                      |+|+|+++++|.+++..+...+.+.++|+|+|+||+.++|.++...+..++++..++....+..    ..........++
T Consensus       158 H~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~n  233 (536)
T 3vue_A          158 VCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFID----GYDTPVEGRKIN  233 (536)
T ss_dssp             EEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEE----TTTSTTCEEEEE
T ss_pred             EECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhh----cccccccccchh
Confidence            9999999999999987776555667899999999999999988777766776654432211100    001112234567


Q ss_pred             HHHHHHHhcCceeecChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccc-cchhHHHH
Q 009139          375 VLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDD-LSGKVQCK  453 (542)
Q Consensus       375 ~~k~~l~~ad~Vi~vS~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d-~~~k~~~k  453 (542)
                      +++.++..||.|+|||+.+++++.+.. ++|+......+..++.+|+||||++.|+|.++..++.+++..+ ..+|..+|
T Consensus       234 ~~k~~i~~ad~v~tVS~~~a~ei~~~~-~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k  312 (536)
T 3vue_A          234 WMKAGILEADRVLTVSPYYAEELISGI-ARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNK  312 (536)
T ss_dssp             HHHHHHHHCSEEEESCHHHHHHHHTTC-CCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHH
T ss_pred             HHHHHHHhccEEEEcCHHHhhhhhccc-ccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHH
Confidence            899999999999999999999987642 3333222223567999999999999999999988888777654 56889999


Q ss_pred             HHHHHHhCCCCCCCCCEEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCCh
Q 009139          454 IALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNV  533 (542)
Q Consensus       454 ~~lr~~lGl~~~~~~~vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~  533 (542)
                      ..+++++|++.+++.|+|+||||++++||++.|++|++++.+.+++|+|+|.|+..+...++.++..+++++.+..++++
T Consensus       313 ~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~  392 (536)
T 3vue_A          313 EALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNA  392 (536)
T ss_dssp             HHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCH
T ss_pred             HHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccH
Confidence            99999999998889999999999999999999999999998889999999999988888999999999999988888888


Q ss_pred             hhhhhhhc
Q 009139          534 PISHRITA  541 (542)
Q Consensus       534 ~l~~~~~A  541 (542)
                      +..+.+++
T Consensus       393 ~~~~~~~~  400 (536)
T 3vue_A          393 PLAHLIMA  400 (536)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87777665
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Back     alignment and structure
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Back     alignment and structure
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Back     alignment and structure
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A* Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Back     alignment and structure
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} Back     alignment and structure
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Back     alignment and structure
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 542
d1rzua_ 477 c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte 2e-67
d2bisa1 437 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro 8e-23
d2bfwa1196 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Py 2e-07
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  223 bits (568), Expect = 2e-67
 Identities = 125/392 (31%), Positives = 181/392 (46%), Gaps = 30/392 (7%)

Query: 153 NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLG 212
           N++ V++E  P  KTGGL DV G+LP+AL A G R   + P Y              D  
Sbjct: 2   NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGY------PAVKAAVTDPV 55

Query: 213 CCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSY-HRPGNPYGDING-AFGDNQFRYTLL 270
            C +     GE +        E +D + +D P+Y  R G PY    G  + DN  R+  L
Sbjct: 56  KCFEFTDLLGE-KADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAAL 114

Query: 271 CYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNL 330
             AA      +  G        +   +DW A + PV +     P        S+L IHN+
Sbjct: 115 SLAAARIGAGVLPG----WRPDMVHAHDWQAAMTPVYMRYAETPE-----IPSLLTIHNI 165

Query: 331 SHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVS 390
           + QG   A  +  L LP+  +G     +              V+ LKG + TA  L TVS
Sbjct: 166 AFQGQFGANIFSKLALPAHAFGMEGIEYY-----------NDVSFLKGGLQTATALSTVS 214

Query: 391 KGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKV 450
             Y+ EI T E G GL  ++ SR  VL+GI NGID   WNP++D  I  +YS  +L  + 
Sbjct: 215 PSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRA 274

Query: 451 QCKIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQF 510
             K A+ +   +      PL   I RL +QKGIDL+  A  EI++   + V+LG+GD   
Sbjct: 275 LNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVAL 333

Query: 511 ESWMRDTEATYKDKYRGWVGFNVPISHRITAG 542
           E  +    + +  +    +G+N P+SH + AG
Sbjct: 334 EGALLAAASRHHGRVGVAIGYNEPLSHLMQAG 365
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437 Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query542
d1rzua_ 477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 100.0
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 99.96
d2iw1a1370 Lipopolysaccharide core biosynthesis protein RfaG 99.77
d2bfwa1196 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 99.03
d1uqta_ 456 Trehalose-6-phosphate synthase, OtsA {Escherichia 98.82
d1l5wa_ 796 Maltodextrin phosphorylase (MALP) {Escherichia col 98.55
d2gj4a1 824 Glycogen phosphorylase {Rabbit (Oryctolagus cunicu 98.29
d2f9fa1166 First mannosyl transferase WbaZ {Archaeoglobus ful 97.98
d1ygpa_ 876 Glycogen phosphorylase {Baker's yeast (Saccharomyc 96.08
d1pn3a_391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 93.33
d1f0ka_351 Peptidoglycan biosynthesis glycosyltransferase Mur 91.99
d1rrva_401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 89.87
d1iira_401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 87.11
d1jaya_212 Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae 82.76
d1ydga_201 Trp repressor binding protein WrbA {Deinococcus ra 81.58
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=4.9e-39  Score=344.35  Aligned_cols=362  Identities=33%  Similarity=0.494  Sum_probs=270.3

Q ss_pred             eEEEEEecccCCCcCCChHhHHHhHHHHHHHHCCCeEEEEEecCCCCCcccchhhhhcccCceeEEeecCCceeEEEEEe
Q 009139          152 YNIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYFNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHE  231 (542)
Q Consensus       152 MkIl~Vt~e~~P~~~~GGl~~~v~~La~~L~~~GheV~Vitp~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~  231 (542)
                      |||+|||+||+|+.++||+++++.+|+++|+++||+|+||+|.|+...   ....+.+.   .+... .+...++.+++.
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~---~~~~~~~~---~~~~~-~~~~~~~~~~~~   73 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVK---AAVTDPVK---CFEFT-DLLGEKADLLEV   73 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHH---HHCCSCEE---EEEES-CSSSCCEEEEEE
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEecCCcchh---hhcccceE---EEEEe-ccCCceEEEEEE
Confidence            999999999999888999999999999999999999999999885321   00000000   00000 011123445566


Q ss_pred             eeCCeEEEEEcCCCCCC-CCCCCCCCC-CCCCChHHHHHHHHHHHHHhccccCCCCCCCCCccEEEECCCchhHHHHHHH
Q 009139          232 YREGVDWVFVDHPSYHR-PGNPYGDIN-GAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCIFLVNDWHAGLVPVLLA  309 (542)
Q Consensus       232 ~~~gv~v~~i~~p~~~~-~~~~y~~~~-~~~~~~~~r~~~~~~a~~~~~~~l~~~~f~~~~pDIIH~H~~~~~~~~~~l~  309 (542)
                      ..+++++++++.|.+.. .+.+|...+ ..|+++..++..++.++.++.+.+.    ...+|||||+|+|++++++.++.
T Consensus        74 ~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~pDIvH~h~~~~~l~~~~~~  149 (477)
T d1rzua_          74 QHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVL----PGWRPDMVHAHDWQAAMTPVYMR  149 (477)
T ss_dssp             EETTEEEEEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCS----SSCCCSEEEEEHHHHTTHHHHHH
T ss_pred             EECCeeEEEecChhhcccCCCcccCcccccccccHHHHHHHHHHHHhhhhhcc----cCCCCCEEEecchhHHHHHHHHH
Confidence            77899999998876432 334443322 4678888888888888777665442    23589999999999988887766


Q ss_pred             HhcCCCCCCCCCcEEEEecCCCcCCCCchhhhhhcCCChhhhcccccccccccccccccchhHHHHHHHHHHhcCceeec
Q 009139          310 SKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYGALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTV  389 (542)
Q Consensus       310 ~~~~~~~~~~~ipvV~TiH~~~~~g~~~~~~~~~lgl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~l~~ad~Vi~v  389 (542)
                      ...     ..++|+|+|+|+..+...++...+..++.+...+...           ........++++..+..+|.++++
T Consensus       150 ~~~-----~~~ip~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ad~~~~v  213 (477)
T d1rzua_         150 YAE-----TPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGME-----------GIEYYNDVSFLKGGLQTATALSTV  213 (477)
T ss_dssp             HSS-----SCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTT-----------TTEETTEEEHHHHHHHHCSEEEES
T ss_pred             Hhh-----CCCCCEEEEEecccccccCCHHHHHHhhcchhhcccc-----------cccccchhHHHHHHHHhhhhhhhc
Confidence            432     2579999999998776665555444444443332211           111122234667788899999999


Q ss_pred             ChhhHHHHHhhccCCchhhhhhcCCccEEEEeCCCcCCCcCCCCcccccccccccccchhHHHHHHHHHHhCCCCCCCCC
Q 009139          390 SKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQCKIALQKELGLPIRPDCP  469 (542)
Q Consensus       390 S~~~~~~l~~~~~g~Gl~~~l~~~~~ki~vIpNGVD~~~f~p~~~~~~~~~~~~~d~~~k~~~k~~lr~~lGl~~~~~~~  469 (542)
                      |..+++++.....+.+.+........++.+|+||+|.+.|+|..+..++...+.+........++.++.+.+++ +++.+
T Consensus       214 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  292 (477)
T d1rzua_         214 SPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRID-DDGSP  292 (477)
T ss_dssp             CHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCC-CSSSC
T ss_pred             cHHHHHHHHHHhcCcchhhhhhhccccEEEEECCcchhhccccccccccccchhhhHHHhhhhHHHHHHhcccc-cCCcc
Confidence            99999887665555555555555678999999999999999988777777777666667777888899999997 45779


Q ss_pred             EEEEEccCccccCHHHHHHHHHhhhcCCcEEEEEecCchhhHHHHHHHHHHcCCCEEEEccCChhhhhhhhc
Q 009139          470 LIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITA  541 (542)
Q Consensus       470 vIlfVGRl~~~KGid~LieA~~~L~~~dv~LVIvG~G~~~~~~~l~~la~~~~~~v~~~~Gy~~~l~~~~~A  541 (542)
                      +|+|+||++++||+++|++|++++.+.+++|+++|.|++.....+++++.++++++.++.+++++..++++|
T Consensus       293 ~i~~vgrl~~~KG~~~Ll~a~~~~~~~~~~l~~~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  364 (477)
T d1rzua_         293 LFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQA  364 (477)
T ss_dssp             EEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHH
T ss_pred             EEEEEeeeeecCCcHHHHHHHHHHHhhCCeEEEEecCCchHHHHHHHHHhhcCCeEEEEcccChhHHHHHHH
Confidence            999999999999999999999999888999999999998888888898989999998888888888877665
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure