Citrus Sinensis ID: 009145

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540--
Protein Sequence
MCVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVPSPTMSAASKGEQKLSAGDKETPIAMETTDVGKAVITATQSVEKVPPAAKVVDVSEATLESASVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPANDLQWKTPQDLAAESCMMPLGPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPFAAQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGEREFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPLPPPPRPSKRKSEHHHHLDRDRDYDYEYDREREREREREREKERERDRNHHHRTESSSKHSSEPPTTTTSSKPTSTAAAGADKKHKGSVFSRISFPEEEAAAKKRKISLSSSSEAVVSGVSGHQKLPTNTNGYYDDYKSSSSHSAKALKTAASRGADYESSDDDRHFKRKPSRYEPSPPPPTADWDDEPRLRRKHNR
Secondary Structure (PSIPRED)
cccccccHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHcccccHHHHHHHHHHHHccccccccccccEEEEcccHHccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHccccHHHHHHHHHccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHcccccEEEEEccccccHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mcvcgatniladdllpnktlRNTINRILesgnnssaenagstfqvqdmesarcppppkvpsptmsaaskgeqklsagdketpiameTTDVGKAVITATQsvekvppaakvvdvseatlesasvkepasqgsapmvDEEVQQKMASGEAAKKKKkkkvrapandlqwktpqdlaaescmmplgpsaynppaaynpywtgiqpgmegymgpfagampympygmgpldmafggvmpqepfaaqgymmpvvppqrdlaefgmgmgmnvpphimsreEFEARKADVRRKRenerrgerefsrdreygrevssggdassmksksksvpqvssadhhhhhrhrpvrsspepplpppprpskrksehhhhldrdrdydyeydREREREREREREKERErdrnhhhrtessskhsseppttttsskptstaaagadkkhkgsvfsrisfpEEEAAAKKRKislsssseavvsgvsghqklptntngyyddyksssshSAKALKTAAsrgadyessdddrhfkrkpsryepspppptadwddeprlrrkhnr
Flexible Loop (DISEMBL)
mcvcgatniladdllpnkTLRNTINRIlesgnnssaenaGSTFQVQDMESARCPPPPKVPSPTMSAASKGEQklsagdketpiAMETTDVGKAVITATqsvekvppaakVVDVSEATlesasvkepasqgsapmvDEEVQQKMASgeaakkkkkkkvrapandlqwktpqDLAAESCMMPLGPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPFAAQGYMMPVVPPQRDLAEFGMGMGMNvpphimsreefearkadvrrkrenerrgerefsrdreygrevssggdassmkskSKSVPQVSSADHHHHhrhrpvrsspepplPPPPRpskrksehhhhldrdrdydyeydrerererererekererdrnhhhrtessskhsseppttttsskptstaaagadkkhkgsvfsrisfPEEEAAAKkrkislsssseavvsgvsghqklptntNGYYDDYKSSSSHSAKALKTAasrgadyessdddrhfkrkpsryepspppptadwddeprlrrkhnr
Low Complexity Region (SEG)
MCVCGATNILADDLLPNKTLRNTINRILesgnnssaenagsTFQVQDMESARCppppkvpspTMSAASKGEQKLSAGDKETPIAMETTDVGKAVITATQSVEKVPPAAKVVDVSEATLESASVKEPASQGSAPMVDEEVQQKMASGEAAkkkkkkkVRAPANDLQWKTPQDLAAESCMMPLGPSaynppaaynpyWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPFAAQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVrrkrenerrgerefsrDREYGREvssggdassmksksksvpqvssADhhhhhrhrpvrsspepplpppprpskrksehhhhldrdrdydyeydrerererererekererdrnhhhrtessskhsseppttttsskptstAAAGADKKHKGSVFSRISFPEEEAAAKKRKIslsssseavvsgvsGHQKLPTNTNGYYDDYksssshsakalktaasRGADYESSDDDRHFkrkpsryepsppppTADWDDEPRLRRKHNR
Disordered region (IsUnstruct)
*CVCGATNILADDLLPNKTLRNTINR**************************************************************************************************************************************************************AYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPFAAQGYMMPVV*******************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MCVCGATNILADDLLPNKTLRNTIN*****************************************************************************************************************************************************************NPPAAYNPYWTGIQPGM***************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MCVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGST***********************************DKETPIAMETTDVGKAVITATQSVEKVPPAAKVVDVS***********************************************NDLQWKTPQDLAAESCMMPLGPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPFAAQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFE******************************************************************************************DRDYDYEY**********************************************************GSVFSRISFPE************************GHQKLPTNTNGYYDDY**********************************************DWDDE*********
Disordered Region (DISPRO)
MCVCGATNILADDLLPNKTLRNTINRILESG****************MESARCPP************************************************************************************************************LQWKTPQDLAAESCMMPLGPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPFAAQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKAD********************************************************************************************************************************************************S*FS*ISFPEE***************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVPSPTMSAASKGEQKLSAGDKETPIAMETTDVGKAVITATQSVEKVPPAAKVVDVSEATLESASVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPANDLQWKTPQDLAAESCMMPLGPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPFAAQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSxxxxxxxxxxxxxxxxxxxxxEREFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPLPPPPRPSKRKSEHHHHLDRDRDYDYExxxxxxxxxxxxxxxxxxxxxNHHHRTESSSKHSSEPPTTTTSSKPTSTAAAGADKKHKGSVFSRISFPEEEAAAKKRKISLSSSSEAVVSGVSGHQKLPTNTNGYYDDYKSSSSHSAKALKTAASRGADYESSDDDRHFKRKPSRYEPSPPPPTADWDDEPRLRRKHNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	542
224074173	537	predicted protein [Populus trichocarpa]	0.935	0.944	0.577	1e-141
296083495	828	unnamed protein product [Vitis vinifera]	0.833	0.545	0.583	1e-130
359496488	823	PREDICTED: uncharacterized protein LOC10	0.833	0.549	0.583	1e-130
356514382	845	PREDICTED: uncharacterized protein LOC10	0.916	0.588	0.577	1e-130
449458968	867	PREDICTED: uncharacterized protein LOC10	0.909	0.568	0.563	1e-130
449504940	867	PREDICTED: uncharacterized LOC101222261	0.909	0.568	0.563	1e-130
147792812	828	hypothetical protein VITISV_001078 [Viti	0.833	0.545	0.581	1e-129
357476815	908	Retinoblastoma-binding protein [Medicago	0.953	0.569	0.524	1e-117
255579645	868	retinoblastoma-binding protein, putative	0.610	0.381	0.709	1e-110
356563334	849	PREDICTED: uncharacterized protein LOC10	0.643	0.411	0.653	1e-108

>gi|224074173|ref|XP_002304286.1| predicted protein [Populus trichocarpa] gi|222841718|gb|EEE79265.1| predicted protein [Populus trichocarpa]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 318/551 (57%), Positives = 380/551 (68%), Gaps = 44/551 (7%)

Query: 2   CVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVPS 61
           CVCG +N+LADDLLPNKTLR+TINRILESGN SSAEN GS FQVQDMESARCPPP K+PS
Sbjct: 11  CVCGVSNVLADDLLPNKTLRDTINRILESGN-SSAENVGSAFQVQDMESARCPPP-KIPS 68

Query: 62  PTMSAASKGEQKLSAGDKETPIAMETTDVGKAVITATQSVEKVPPAAKVVDVSEATLESA 121
           PT SAASKGE K S  ++E+PI  +     +  + A+Q V +    AK VDVSEAT ES 
Sbjct: 69  PTQSAASKGEHKPSPVNEESPILNKAIAEEEKPLIASQQVPEKVRTAKAVDVSEATHESI 128

Query: 122 SVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPANDLQWKTPQDLAAESCMMPL 181
           SVKEPASQGSAP+ +EEVQQK+A GEA KKKKKKKVR P NDL WK  QDLAAES MMP+
Sbjct: 129 SVKEPASQGSAPLAEEEVQQKLAPGEAGKKKKKKKVRMPPNDL-WKASQDLAAESFMMPM 187

Query: 182 GPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPFAAQG 241
           GPSA+NP      YW+G+Q GMEGYM P+ G MP+M YG+ PLDM +GGVMP +PF AQ 
Sbjct: 188 GPSAFNP------YWSGMQTGMEGYMAPYPGPMPFMGYGLSPLDMPYGGVMPPDPFGAQS 241

Query: 242 YMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGEREFSRDREY 301
           YMMP VPPQRDLAEFGM M  N+ P +MSREEFEARKADVRR+RENERR EREFSRD + 
Sbjct: 242 YMMPAVPPQRDLAEFGMNM--NLRPPLMSREEFEARKADVRRRRENERRAEREFSRDWDP 299

Query: 302 GREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPL----PPPPRPSKRKS 357
           GREVS GGD SSMKSKS  +PQ S++   HH+R R  R SPE       P PPRPSKRKS
Sbjct: 300 GREVSGGGDVSSMKSKS--IPQSSASGDPHHNRRRSERLSPERSAREIDPLPPRPSKRKS 357

Query: 358 EHHHHLDRDRDYDYEYDREREREREREREKERERDRNHHHRTESSSKHSSEPPTTTTSSK 417
           + H H DRD D D++Y      +R+         + +    +E+++K    PP+TT +  
Sbjct: 358 DRHEHGDRDAD-DFDYHERDRSDRDHRHHHRHRSESSSKAVSETTTK----PPSTTVT-- 410

Query: 418 PTSTAAAGADKKHKGSVFSRISFPEE--------EAAAKKRKISLSSSSEAVVSGVSGHQ 469
                    D+K K SVFSRISFP E        + ++       ++     +S      
Sbjct: 411 ---------DRKQKVSVFSRISFPAEGEPTSKKRKVSSSSEAAPAATGGGGPLSSTHHKS 461

Query: 470 KLPTNTNGYYDDYKSSSSHSAKALKTAASRGA-DYESSDDDRHFKRKPSRYEPSPPPPTA 528
             P N NGYYDDYKSSS  + K+  + A+  A DYESSDDDRHFKRKPSRYEPSPPPP A
Sbjct: 462 SSPVN-NGYYDDYKSSSVKTRKSSSSVAATAAMDYESSDDDRHFKRKPSRYEPSPPPP-A 519

Query: 529 DWDDEPRLRRK 539
           +W+++ +  R+
Sbjct: 520 EWEEDVKHSRR 530

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083495|emb|CBI23464.3| unnamed protein product [Vitis vinifera]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 309/530 (58%), Positives = 355/530 (66%), Gaps = 78/530 (14%)

Query: 1   MCVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVP 60
           MCVCGATNILADDLLPNKTLR+TINRILES NNSSAENAGS  QVQDMESARCP P K+P
Sbjct: 333 MCVCGATNILADDLLPNKTLRDTINRILES-NNSSAENAGSALQVQDMESARCPQP-KIP 390

Query: 61  SPTMSAASKGEQKLSAGDKETP-IAMETTDVGKAVITATQSVEKVPPAAKVVDVSEATLE 119
           SPT+SAASKGEQ      +ETP I     D  K+     Q  EK     K  DVSEATLE
Sbjct: 391 SPTLSAASKGEQMPPPQIEETPNIIKPVADESKSANPPPQLPEKGR-TGKAADVSEATLE 449

Query: 120 SASVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPAN--DLQWKTPQDLAAESC 177
           S SVKE ASQGSAP+ +EEVQQK+ASGEA KKKKKKK R P N  D+QWK+ QDLAAE+ 
Sbjct: 450 SMSVKELASQGSAPLAEEEVQQKLASGEAGKKKKKKKARVPVNAADIQWKSTQDLAAENY 509

Query: 178 MMPLGPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPF 237
           MMP+ P+       Y PYW G+QPGM+G+M P+AGAMPYM YG   LDM FGGV+PQ PF
Sbjct: 510 MMPMDPT-------YAPYWNGMQPGMDGFMNPYAGAMPYMGYGYNTLDMPFGGVLPQGPF 562

Query: 238 AAQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGE-REFS 296
            A GYM+PVVPPQRDLA+FGMG+  N  P +MSREEFEARKAD+RR+RE+ERRGE +EF 
Sbjct: 563 GAPGYMLPVVPPQRDLADFGMGL--NAAPPVMSREEFEARKADLRRRRESERRGESKEFP 620

Query: 297 RDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPL--PPPPRPSK 354
           +DREYGRE S GGD S+MK K K  PQ SSADHHH  R RP RSSPE P      PRPSK
Sbjct: 621 KDREYGREGSMGGDVSTMKPKPKLAPQSSSADHHHR-RPRPERSSPERPTRDVEAPRPSK 679

Query: 355 RKSEHHHHLDRDRDYDYEYDREREREREREREKERERDRNHHHRTESSSKHSSEPPTTTT 414
           RKSEHH                                   HHR   SS   + PP +  
Sbjct: 680 RKSEHH-----------------------------------HHRPSDSS---ARPPPSAA 701

Query: 415 SSKPTSTAAAGADKKHKGSVFSRISFPEEEAAAKKRKISLSSSSEAVVSGVSGHQKLPTN 474
           +    S A    D+K K SVFSRISFPEEE   KKRK+S + S+ A+             
Sbjct: 702 AESSRSLA----DRKAKPSVFSRISFPEEEPT-KKRKLSETPSASAI------------- 743

Query: 475 TNGYYDDYKSSSSHSAKALKTAASRGADYESSDDDRHFKRKPSRYEPSPP 524
            NG ++D+K S S +A + K++ +   +YESSD+DRHFKRKPSRYEPSPP
Sbjct: 744 PNGQHEDWKVSPSSAAASRKSSVT---EYESSDEDRHFKRKPSRYEPSPP 790

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496488|ref|XP_003635247.1| PREDICTED: uncharacterized protein LOC100854867 [Vitis vinifera]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 309/530 (58%), Positives = 356/530 (67%), Gaps = 78/530 (14%)

Query: 1   MCVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVP 60
           MCVCGATNILADDLLPNKTLR+TINRILES NNSSAENAGS  QVQDMESARCP P K+P
Sbjct: 328 MCVCGATNILADDLLPNKTLRDTINRILES-NNSSAENAGSALQVQDMESARCPQP-KIP 385

Query: 61  SPTMSAASKGEQKLSAGDKETP-IAMETTDVGKAVITATQSVEKVPPAAKVVDVSEATLE 119
           SPT+SAASKGEQ      +ETP I     D  K+     Q  EK     K  DVSEATLE
Sbjct: 386 SPTLSAASKGEQMPPPQIEETPNIIKPVADESKSANPPPQLPEKGR-TGKAADVSEATLE 444

Query: 120 SASVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPAN--DLQWKTPQDLAAESC 177
           S SVKE ASQGSAP+ +EEVQQK+ASGEA KKKKKKK R P N  D+QWK+ QDLAAE+ 
Sbjct: 445 SMSVKELASQGSAPLAEEEVQQKLASGEAGKKKKKKKARVPVNAADIQWKSTQDLAAENY 504

Query: 178 MMPLGPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPF 237
           MMP+ P+       Y PYW G+QPGM+G+M P+AGAMPYM YG   LDM FGGV+PQ PF
Sbjct: 505 MMPMDPT-------YAPYWNGMQPGMDGFMNPYAGAMPYMGYGYNTLDMPFGGVLPQGPF 557

Query: 238 AAQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGE-REFS 296
            A GYM+PVVPPQRDLA+FGMG+  N  P +MSREEFEARKAD+RR+RE+ERRGE +EF 
Sbjct: 558 GAPGYMLPVVPPQRDLADFGMGL--NAAPPVMSREEFEARKADLRRRRESERRGESKEFP 615

Query: 297 RDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPL--PPPPRPSK 354
           +DREYGRE S GGD S+MK K K  PQ SSADHHH  R RP RSSPE P      PRPSK
Sbjct: 616 KDREYGREGSMGGDVSTMKPKPKLAPQSSSADHHHR-RPRPERSSPERPTRDVEAPRPSK 674

Query: 355 RKSEHHHHLDRDRDYDYEYDREREREREREREKERERDRNHHHRTESSSKHSSEPPTTTT 414
           RKSEHH                                   HHR   SS  +  PP+   
Sbjct: 675 RKSEHH-----------------------------------HHRPSDSS--ARPPPSAAA 697

Query: 415 SSKPTSTAAAGADKKHKGSVFSRISFPEEEAAAKKRKISLSSSSEAVVSGVSGHQKLPTN 474
            S     + + AD+K K SVFSRISFPEEE   KKRK+S + S+ A+             
Sbjct: 698 ES-----SRSLADRKAKPSVFSRISFPEEEPT-KKRKLSETPSASAI------------- 738

Query: 475 TNGYYDDYKSSSSHSAKALKTAASRGADYESSDDDRHFKRKPSRYEPSPP 524
            NG ++D+K S S +A + K++ +   +YESSD+DRHFKRKPSRYEPSPP
Sbjct: 739 PNGQHEDWKVSPSSAAASRKSSVT---EYESSDEDRHFKRKPSRYEPSPP 785

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514382|ref|XP_003525885.1| PREDICTED: uncharacterized protein LOC100798536 [Glycine max]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 318/551 (57%), Positives = 376/551 (68%), Gaps = 54/551 (9%)

Query: 1   MCVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVP 60
           +CVCGATNILADDLLPNKTLR+TINRILESGN SSAENAGSTFQ QDMESARCP P K+P
Sbjct: 328 ICVCGATNILADDLLPNKTLRDTINRILESGN-SSAENAGSTFQAQDMESARCPQP-KIP 385

Query: 61  SPTMSAASKGEQKLSAGDKETPIAMETTDVGKAVITATQSVEKV--PPAAKVVDVSEATL 118
           SPT SAASKGE K+S  +++T    ETTD  KAV    Q+ E+V  P AA   D+SEAT 
Sbjct: 386 SPTSSAASKGELKVSPVNEKTTNIQETTDDRKAVSAPQQTSEQVRNPRAA---DISEATH 442

Query: 119 ESASVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPANDLQWKTPQDLAAESCM 178
           ES SVKEPASQ SA  V+EEVQQK+   EA KKKKKKKVR   NDLQWKTP D  AE+ M
Sbjct: 443 ESMSVKEPASQWSAQQVEEEVQQKLVPTEAGKKKKKKKVRLLPNDLQWKTPHDFGAENYM 502

Query: 179 MPLGPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPFA 238
           MP+ P     PA YN YW G+QP M+G+M P+   M  M YG+GPLDM FGG MPQ+PF 
Sbjct: 503 MPMVP-----PAGYNSYWNGMQP-MDGFMAPYGNPMQMMGYGLGPLDMPFGG-MPQDPFG 555

Query: 239 AQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGEREFSRD 298
            QGYMMP  PP RDLA+F MGM  N P  +MSREEFEARKAD+RRKREN+RR ER+FS+D
Sbjct: 556 MQGYMMPGFPPHRDLADFSMGM--NAPAPVMSREEFEARKADMRRKRENDRRPERDFSKD 613

Query: 299 REYGREVSSGGDASSMKSKSKSVPQVSSADHHH----HHRHRPVRSSPEPPLPPPPRPSK 354
           R++GREVSS GD SSMKSK++S+P  S +D+HH      RH P RS      PPPPRP+K
Sbjct: 614 RDFGREVSSVGDVSSMKSKTRSIPPSSGSDYHHPRFRSERHSPDRSP-REVEPPPPRPTK 672

Query: 355 RKSEHHHHLDRDRDYDYEYDREREREREREREKERERDRNHHHRTESSSKHSSEPPTTTT 414
           RKS+H+               +RERE      +      N H R+ESSS+ SSEP    +
Sbjct: 673 RKSDHNS--------------DREREDRDRDYEHERHHHNRHQRSESSSRRSSEPVAKAS 718

Query: 415 SSKPTSTAAAGADKKHKGSVFSRISFPEEEAAAKKRKISLSSSSEAVVSGVSGHQK---- 470
           S+   + AAA AD+K K SVFSRISFP EE   KKRK++ SS++E   +  +        
Sbjct: 719 STASAAAAAAAADRKQKASVFSRISFPAEEELPKKRKVTASSTTEPAAAAAAAAAAPTAS 778

Query: 471 ---LPTNTNGYYDDYKSSSSHSAKALKTAASRGADYESSDDDRHFKRKPSRYEPSPPPPT 527
              L T +NGYY+  KSSS+             ADYESSDD+RHFKR+PSRYEPSPPP  
Sbjct: 779 SAHLKTMSNGYYEGRKSSSAV------------ADYESSDDERHFKRRPSRYEPSPPPQP 826

Query: 528 ADWDDEPRLRR 538
           A+W++E R  R
Sbjct: 827 AEWEEEGRHSR 837

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458968|ref|XP_004147218.1| PREDICTED: uncharacterized protein LOC101222261 [Cucumis sativus]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 310/550 (56%), Positives = 365/550 (66%), Gaps = 57/550 (10%)

Query: 2   CVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVPS 61
           CVCGATNILADDLLPNKTLR+TINRILESGN SSA+NAGS +QVQDMESAR   P KVPS
Sbjct: 330 CVCGATNILADDLLPNKTLRDTINRILESGN-SSADNAGSAYQVQDMESARVAQP-KVPS 387

Query: 62  PTMSAASKGEQKLSAGDKETPIAMETTDVGKAVITATQSVEKVPPAAKVVDVSEATLESA 121
           PT+SAASKGE+ + +  +ET    E  +  K V +  Q++ +   A KVVD SEAT ES 
Sbjct: 388 PTLSAASKGERNIQSVIEETTKTKEVEE-EKVVTSGPQTLVEKVKATKVVDESEATHESI 446

Query: 122 SVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPANDLQWKTPQDLAAESCMMPL 181
           SVKE ASQGSA +VDEEVQQKMA+ EA KKKKKKKVR PAND QWKT QDLA E+ MMP+
Sbjct: 447 SVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRPPANDFQWKTSQDLATENYMMPM 506

Query: 182 GPSAYNPPAAYNPYWTGIQPGMEGYMG--PFAGAMPYMP-YGMGPLDMAFGGVMPQEPFA 238
           G      PA YNPYWTG+Q G +GYM    +A  MPYM  YG+GPLDM FG VMPQ+PFA
Sbjct: 507 GG-----PAPYNPYWTGMQSGFDGYMNMPSYAAPMPYMGGYGLGPLDMPFGPVMPQDPFA 561

Query: 239 AQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGEREFS-- 296
            Q YM PV PPQRDLA+FGMGM  N+ PH MSREEFEARKA +  +R++E     E    
Sbjct: 562 MQNYMFPVAPPQRDLADFGMGM--NIAPHAMSREEFEARKAGLNLRRKHENERRVESRER 619

Query: 297 ---RDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPL----PPP 349
              +DRE+GREV +GGD  SMK KSK  PQ S+++H+ + R RP  SSP+ P     P P
Sbjct: 620 EPPKDREFGREVCTGGDGPSMKQKSKFAPQTSNSEHNPNRR-RP-ESSPDVPRNIGPPGP 677

Query: 350 PRPSKRKSEHHHH-LDRDRDYDYEYDREREREREREREKERERDRNHHHRTESSSKHSSE 408
           P P KRKSEHH H +D+D   D+ YD    R                 HR  S S+    
Sbjct: 678 PLPRKRKSEHHDHDIDKDNHNDH-YDHGHNR-----------------HRQHSESR---- 715

Query: 409 PPTTTTSSKPTSTAAAGADKKHKGSVFSRISFPEEEAAAKKRKISLSSSSEAVVSGVSGH 468
                +     S A+A AD+K K SVFSRISFPEEEA  KKRK+S S  +    SG S  
Sbjct: 716 ---GASEVSAKSAASAAADRKQKMSVFSRISFPEEEAI-KKRKLSSSKEAPPNDSGASAT 771

Query: 469 QKLPTNTNGYYDDYK----SSSSHSAKALKTAAS-RGADYESSDDDRHFKRKPSRYEPSP 523
               +++NGYYDDYK    ++   S++   +A S    D ESSDDDRHFKRKPSRYEPS 
Sbjct: 772 HHKSSSSNGYYDDYKPKPATTMVTSSRGRSSATSATSLDCESSDDDRHFKRKPSRYEPS- 830

Query: 524 PPPTADWDDE 533
           PPP +DWD E
Sbjct: 831 PPPPSDWDQE 840

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449504940|ref|XP_004162336.1| PREDICTED: uncharacterized LOC101222261 [Cucumis sativus]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 310/550 (56%), Positives = 365/550 (66%), Gaps = 57/550 (10%)

Query: 2   CVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVPS 61
           CVCGATNILADDLLPNKTLR+TINRILESGN SSA+NAGS +QVQDMESAR   P KVPS
Sbjct: 330 CVCGATNILADDLLPNKTLRDTINRILESGN-SSADNAGSAYQVQDMESARVAQP-KVPS 387

Query: 62  PTMSAASKGEQKLSAGDKETPIAMETTDVGKAVITATQSVEKVPPAAKVVDVSEATLESA 121
           PT+SAASKGE+ + +  +ET    E  +  K V +  Q++ +   A KVVD SEAT ES 
Sbjct: 388 PTLSAASKGERNIQSVIEETTKTKEVEE-EKVVTSGPQTLVEKVKATKVVDESEATHESI 446

Query: 122 SVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPANDLQWKTPQDLAAESCMMPL 181
           SVKE ASQGSA +VDEEVQQKMA+ EA KKKKKKKVR PAND QWKT QDLA E+ MMP+
Sbjct: 447 SVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRPPANDFQWKTSQDLATENYMMPM 506

Query: 182 GPSAYNPPAAYNPYWTGIQPGMEGYMG--PFAGAMPYMP-YGMGPLDMAFGGVMPQEPFA 238
           G      PA YNPYWTG+Q G +GYM    +A  MPYM  YG+GPLDM FG VMPQ+PFA
Sbjct: 507 GG-----PAPYNPYWTGMQSGFDGYMNMPSYAAPMPYMGGYGLGPLDMPFGPVMPQDPFA 561

Query: 239 AQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGEREFS-- 296
            Q YM PV PPQRDLA+FGMGM  N+ PH MSREEFEARKA +  +R++E     E    
Sbjct: 562 MQNYMFPVAPPQRDLADFGMGM--NIAPHAMSREEFEARKAGLNLRRKHENERRVESRER 619

Query: 297 ---RDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPL----PPP 349
              +DRE+GREV +GGD  SMK KSK  PQ S+++H+ + R RP  SSP+ P     P P
Sbjct: 620 EPPKDREFGREVCTGGDGPSMKQKSKFAPQTSNSEHNPNRR-RP-ESSPDVPRNIGPPGP 677

Query: 350 PRPSKRKSEHHHH-LDRDRDYDYEYDREREREREREREKERERDRNHHHRTESSSKHSSE 408
           P P KRKSEHH H +D+D   D+ YD    R                 HR  S S+    
Sbjct: 678 PLPRKRKSEHHDHDIDKDNHNDH-YDHGHNR-----------------HRQHSESR---- 715

Query: 409 PPTTTTSSKPTSTAAAGADKKHKGSVFSRISFPEEEAAAKKRKISLSSSSEAVVSGVSGH 468
                +     S A+A AD+K K SVFSRISFPEEEA  KKRK+S S  +    SG S  
Sbjct: 716 ---GASEVSAKSAASAAADRKQKMSVFSRISFPEEEAI-KKRKLSSSKEAPPNDSGASAT 771

Query: 469 QKLPTNTNGYYDDYK----SSSSHSAKALKTAAS-RGADYESSDDDRHFKRKPSRYEPSP 523
               +++NGYYDDYK    ++   S++   +A S    D ESSDDDRHFKRKPSRYEPS 
Sbjct: 772 HHKSSSSNGYYDDYKPKAATTMVTSSRGRSSATSATSLDCESSDDDRHFKRKPSRYEPS- 830

Query: 524 PPPTADWDDE 533
           PPP +DWD E
Sbjct: 831 PPPPSDWDQE 840

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792812|emb|CAN68806.1| hypothetical protein VITISV_001078 [Vitis vinifera]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 308/530 (58%), Positives = 354/530 (66%), Gaps = 78/530 (14%)

Query: 1   MCVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVP 60
           MCVCGATNILADDLLPNKTLR+TINRILES NNSSAENAGS  QVQDMESARCP P K+P
Sbjct: 333 MCVCGATNILADDLLPNKTLRDTINRILES-NNSSAENAGSALQVQDMESARCPQP-KIP 390

Query: 61  SPTMSAASKGEQKLSAGDKETP-IAMETTDVGKAVITATQSVEKVPPAAKVVDVSEATLE 119
           SPT+SAASKGEQ      +ETP I     D  K+     Q  EK     K  DVSEATLE
Sbjct: 391 SPTLSAASKGEQMPPPQIEETPNIIKPVADESKSANPPPQLPEKGR-TGKAADVSEATLE 449

Query: 120 SASVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPAN--DLQWKTPQDLAAESC 177
           S SVKE ASQGSAP+ +EEVQQK+ASGEA KKKKKKK R P N  D+QWK+ QDLAAE+ 
Sbjct: 450 SMSVKELASQGSAPLAEEEVQQKLASGEAGKKKKKKKARVPVNAADIQWKSTQDLAAENY 509

Query: 178 MMPLGPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPF 237
           MMP+ P+       Y PYW G+QPGM+G+M P+AGAMPYM YG   LDM FGGV+PQ PF
Sbjct: 510 MMPMDPT-------YAPYWNGMQPGMDGFMNPYAGAMPYMGYGYNTLDMPFGGVLPQGPF 562

Query: 238 AAQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGE-REFS 296
            A GYM+PVVPPQRDLA+FGMG+  N  P  MSREEFEARKAD+RR+RE+ERRGE +EF 
Sbjct: 563 GAPGYMLPVVPPQRDLADFGMGL--NAAPPXMSREEFEARKADLRRRRESERRGESKEFP 620

Query: 297 RDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPL--PPPPRPSK 354
           +DREY RE S GGD S+MK K K  PQ SSADHHH  R RP RSSPE P      PRPSK
Sbjct: 621 KDREYXREGSMGGDVSTMKPKPKLAPQSSSADHHHR-RPRPERSSPERPTRDVEAPRPSK 679

Query: 355 RKSEHHHHLDRDRDYDYEYDREREREREREREKERERDRNHHHRTESSSKHSSEPPTTTT 414
           RKSEHH                                   HHR   SS  +  PP+   
Sbjct: 680 RKSEHH-----------------------------------HHRPSDSS--ARPPPSAAA 702

Query: 415 SSKPTSTAAAGADKKHKGSVFSRISFPEEEAAAKKRKISLSSSSEAVVSGVSGHQKLPTN 474
            S     + + AD+K K SVFSRISFPEEE   KKRK+S + S+ A+             
Sbjct: 703 ES-----SRSLADRKAKPSVFSRISFPEEEPT-KKRKLSETPSASAI------------- 743

Query: 475 TNGYYDDYKSSSSHSAKALKTAASRGADYESSDDDRHFKRKPSRYEPSPP 524
            NG ++D+K S S +A + K++ +   +YESSD+DRHFKRKPSRYEPSPP
Sbjct: 744 PNGQHEDWKVSPSSAAASRKSSVT---EYESSDEDRHFKRKPSRYEPSPP 790

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476815|ref|XP_003608693.1| Retinoblastoma-binding protein [Medicago truncatula] gi|355509748|gb|AES90890.1| Retinoblastoma-binding protein [Medicago truncatula]

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 307/585 (52%), Positives = 368/585 (62%), Gaps = 68/585 (11%)

Query: 1   MCVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVP 60
           MCVCGA N+LADDLLPNKTLR+TINRILESGN SS ENAGST+QVQDMESARCP P K+P
Sbjct: 337 MCVCGAMNVLADDLLPNKTLRDTINRILESGN-SSTENAGSTYQVQDMESARCPQP-KIP 394

Query: 61  SPTMSAASKGEQKLSAGDKETPIAMETTDVGKAVITATQSVE--KVPPAAKVVDVSEATL 118
           SPT SAASKG  K+S     T    +T    K V    Q+ E  K+P A    DVSEAT 
Sbjct: 395 SPTSSAASKGGLKISPVYDGTTNIQDTAVETKVVSAPPQTSEHVKIPRAG---DVSEATH 451

Query: 119 ESASVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPANDLQWKTPQDLAAESCM 178
           ES SVKEP SQGSA +V+EEVQQK+   EA KKKKKKKVR P ND QWK P DL AE+ M
Sbjct: 452 ESKSVKEPVSQGSAQVVEEEVQQKLVPTEAGKKKKKKKVRMPTNDFQWKPPHDLGAENYM 511

Query: 179 MPLGPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPFA 238
           M +GP     P  YNPYW G+QP M+G+M P+AG M  M YG GP DM F   MP +PFA
Sbjct: 512 MQMGP-----PPGYNPYWNGMQPCMDGFMAPYAGPMHMMDYGHGPYDMPFPNGMPHDPFA 566

Query: 239 ---------AQGYMMPVVPP--QRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKREN 287
                     QGYMMP +PP   RDLAEF MGM  NVPP  MSREEFEARKAD RRKREN
Sbjct: 567 NGMPHDPFGMQGYMMPPIPPPPHRDLAEFSMGM--NVPPPAMSREEFEARKADARRKREN 624

Query: 288 ERRGEREFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPL- 346
           ERR ER+FS+DR++GREVSS GD SS+KSK+K +P  SSA  +H +RHR  R SP+    
Sbjct: 625 ERRVERDFSKDRDFGREVSSVGDVSSIKSKTKPIPP-SSASDYHQNRHRSERPSPDSSHR 683

Query: 347 -PPPPRPSKRKSEH-------------HHHLDRDRDYDYEYDREREREREREREKERERD 392
              PPRP+KRKS+H             +H   +DRDY+++  + R      E   ++  D
Sbjct: 684 EVEPPRPTKRKSDHSEREREDRDRDYDYHDRHQDRDYEHDRHQHRRHHHRTEASSKKSTD 743

Query: 393 --------RNHHHRTESSSKHSSEPPTTTTS-------SKPTSTAAAGADKKHKGSVFSR 437
                   ++     +S S+ SSEP T + S       +   + AAA AD+K K SVFSR
Sbjct: 744 PVTKSTSRKSSEPDIKSKSRKSSEPVTKSLSLSKTAQTTSAEAAAAAAADRKQKASVFSR 803

Query: 438 ISFP---EEEAAAKKRKISLSSSSEAVVSGVSG-HQKLPTNTNGYYDDYKSSSSHSAKAL 493
           ISFP   E  AAAKKRK+S SS++EA  +  +    K P+ T      + S+    +KA+
Sbjct: 804 ISFPSEEEAAAAAKKRKLSASSTTEASTAATASVSAKAPSTT------HLSNGGRKSKAV 857

Query: 494 KTAASRGADYESSDDDRHFKRKPSRYEPSPPPPTADWDDEPRLRR 538
                     +  DD+RHFKR+PSRYEPSPPPP  DW +E R  R
Sbjct: 858 MDDYESSD--DDEDDERHFKRRPSRYEPSPPPPVDDWVEEGRHSR 900

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579645|ref|XP_002530663.1| retinoblastoma-binding protein, putative [Ricinus communis] gi|223529796|gb|EEF31732.1| retinoblastoma-binding protein, putative [Ricinus communis]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/351 (70%), Positives = 270/351 (76%), Gaps = 20/351 (5%)

Query: 2   CVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVPS 61
           CVCGATNILADDLLPNKTLR+TINRILESGN SSAENAGSTFQVQDMESAR P P K+PS
Sbjct: 329 CVCGATNILADDLLPNKTLRDTINRILESGN-SSAENAGSTFQVQDMESARNPQP-KIPS 386

Query: 62  PTMSAASKGEQKLSAGDKETPI--AMETTDVGKAVITATQSVEKVPPAAKVVDVSEATLE 119
           PT SAASK EQK S   +ETP     E  D  K VI   Q  +K P   K  DVSEAT E
Sbjct: 387 PTQSAASKEEQKPSPAIEETPNPNLKEKVDEEKPVILLQQVPDK-PRTYKAPDVSEATHE 445

Query: 120 SASVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPANDLQWKTPQDLAAESCMM 179
           S S++EPASQGSAP+ +EEVQQ++A GEA KKKKKKKVR P ND+ WK  QDLA ES MM
Sbjct: 446 SMSMREPASQGSAPLAEEEVQQRLAPGEAGKKKKKKKVRMPPNDM-WKASQDLATESYMM 504

Query: 180 PLGPSAYNPPAAYNPYWTGIQPGMEGYMGP---FAGAMPYMPYGMGPLDMAFGGVMPQEP 236
           PLGPSAYNP      YW G+QPGME YM P   FA  MP+M YGMGPLDM FGGVMP +P
Sbjct: 505 PLGPSAYNP------YWNGMQPGMESYMNPMNPFAAPMPFMGYGMGPLDMPFGGVMPPDP 558

Query: 237 FAAQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGEREFS 296
           F+AQGYMMPVVPPQRDLA+FGMGM  N  P  MSREEFEARKAD+RR+RENERR EREF 
Sbjct: 559 FSAQGYMMPVVPPQRDLADFGMGM--NAGPPAMSREEFEARKADLRRRRENERRAEREFP 616

Query: 297 RDREYGREVSSGGDASSMKSKSKSVPQVS-SADHHHHHRHRPVRSSPEPPL 346
           RDRE+GREVSSG D SSM  KSK +PQ S S D H HHRHR  RSSPE P+
Sbjct: 617 RDREFGREVSSGVDISSM--KSKPIPQPSRSGDPHPHHRHRSERSSPERPV 665

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563334|ref|XP_003549919.1| PREDICTED: uncharacterized protein LOC100808703 [Glycine max]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 239/366 (65%), Positives = 274/366 (74%), Gaps = 17/366 (4%)

Query: 1   MCVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVP 60
           +CVCGATNILADDLLPNKTLR+TINRILESGN SSAENAGSTFQ QDMESARCP P K+P
Sbjct: 328 ICVCGATNILADDLLPNKTLRDTINRILESGN-SSAENAGSTFQAQDMESARCPQP-KIP 385

Query: 61  SPTMSAASKGEQKLSAGDKETPIAMETTDVGKAVITATQSVEKV--PPAAKVVDVSEATL 118
           SPT SAASKG+ K+S+ +++T    ET D  KAV    Q+ E+V  P AA   D+SEAT 
Sbjct: 386 SPTSSAASKGDLKVSSVNEKTTNIQETADDRKAVSAPQQTSEQVRNPRAA---DISEATH 442

Query: 119 ESASVKEPASQGSAPMVDEEVQQKMASGEAAKKKKKKKVRAPANDLQWKTPQDLAAESCM 178
           ES SVKEPASQGSA  V+EEVQQK+   EA KKKKKKKVR P NDLQWKTP D  AE+  
Sbjct: 443 ESMSVKEPASQGSAQQVEEEVQQKLVPTEAGKKKKKKKVRLPPNDLQWKTPHDFGAEN-Y 501

Query: 179 MPLGPSAYNPPAAYNPYWTGIQPGMEGYMGPFAGAMPYMPYGMGPLDMAFGGVMPQEPFA 238
           M        PP  YN YW G+QP M+G+M P+   M  M YG+GPLDM FGG MPQ+PF 
Sbjct: 502 MMNNMMPMVPPPGYNSYWNGMQP-MDGFMAPYGNPMQMMGYGLGPLDMPFGG-MPQDPFG 559

Query: 239 AQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGEREFSRD 298
            QGYMMP  PP RDLA+F MGM  NVPP +MSREEFEARKAD+RRKREN+RR ER+FS+D
Sbjct: 560 MQGYMMPGFPPHRDLADFSMGM--NVPPPVMSREEFEARKADMRRKRENDRRPERDFSKD 617

Query: 299 REYGREVSSGGDASSMKSKSKSVPQVSSADHHH----HHRHRPVRSSPEPPLPPPPRPSK 354
           R++GREVSS GD SSMKSK++S+P  S +D+H       RH P R SP    PPPPRP+K
Sbjct: 618 RDFGREVSSVGDVSSMKSKTRSIPPSSGSDYHQPRFRSERHSPDR-SPRDVEPPPPRPTK 676

Query: 355 RKSEHH 360
           RK EHH
Sbjct: 677 RKLEHH 682

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	542
TAIR|locus:2171569	892	AT5G47430 [Arabidopsis thalian	0.498	0.302	0.409	1.5e-46

TAIR|locus:2171569 AT5G47430 [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
 Identities = 125/305 (40%), Positives = 160/305 (52%)

Query:     1 MCVCGATNILADDLLPNKTLRNTINRILXXXXXXXXXXXXXTFQVQDMESARCXXXXXXX 60
             MCVCG +++LADDLLPNKTLR+TINRIL                + D+ESARC       
Sbjct:   330 MCVCGRSDVLADDLLPNKTLRDTINRILEAGNDSTENVGSVG-HIPDLESARCPPPKALS 388

Query:    61 XXTMSAASKGEQK--LSAG-DKETPIA-METTDVGKAV-ITATQSVEKVPPAAKVVDVSE 115
               T S ASKGE+K  LS   D  T  A ME  ++  A   +A  +VEK  P    VD  E
Sbjct:   389 PTT-SVASKGEKKPVLSNNNDASTLKAPMEVAEITSAPRASAEVNVEK--P----VDACE 441

Query:   116 ATLESASVKEPA-SQGSAPMVDEEVQQKMASGEAAXXXXXXXVRAPANDLQWKTPQDLAA 174
             +T  S  VKE   S+ +     EE+QQ++A+GE          R P ND+QW    DLA 
Sbjct:   442 STQGSVIVKEATVSKLNTQAPKEEMQQQVAAGEPGKKKKKKP-RVPGNDMQWNPVPDLAG 500

Query:   175 ESCMMPLGPSXXXXXXXXXXX------WTGIQPGMEGYM-------GPFAGAMP-YMPYG 220
                MM +GP                  + G+QPG  G+        GPF GAMP +M YG
Sbjct:   501 PDYMMQMGPGPQYFNGMQPGFNGVQPGFNGVQPGFNGFHPGFNGFGGPFPGAMPPFMGYG 560

Query:   221 MGPLDMAFGG---VMPQEPFAAQGYMMP-VVPPQRDLAEFGMGMGMNVPPHIMSREEFEA 276
             + P+DM FGG   +M  +PF AQG+  P + PP RDLAE  MG  MN+   +M R+E EA
Sbjct:   561 LNPMDMGFGGGMNMMHPDPFMAQGFGFPNIPPPHRDLAE--MGNRMNLQRAMMGRDEAEA 618

Query:   277 RKADV 281
             R A++
Sbjct:   619 RNAEM 623

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_III000585 hypothetical protein (537 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	542
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	2e-04
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	0.001
COG5183	1175	COG5183, SSM4, Protein involved in mRNA turnover a	0.004

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 33/128 (25%), Positives = 46/128 (35%), Gaps = 21/128 (16%)

Query: 285 RENERRGEREFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEP 344
           R+ E   ERE SR R+         D SS + + +S  +    D H   R R  R     
Sbjct: 1   RDEEPDREREKSRGRD--------RDRSSERPRRRSRDRSRFRDRHRRSRERSYREDS-- 50

Query: 345 PLPPPPRPSKRKSEHHHHLDRDRDYDYEYDRERERERER-----EREKERERDRNHHHRT 399
                 RP  R+          R       R+R R R R     E+ + R RDR+  ++ 
Sbjct: 51  ------RPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQW 104

Query: 400 ESSSKHSS 407
               K  S
Sbjct: 105 RKDDKKRS 112

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 34/159 (21%), Positives = 46/159 (28%), Gaps = 32/159 (20%)

Query: 282 RRKRENERRGEREFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSS 341
            R+RE  R  +R+ S +R   R           + +S+        D H   R R  R  
Sbjct: 6   DREREKSRGRDRDRSSERPRRRS----------RDRSR------FRDRHRRSRERSYRED 49

Query: 342 PEPPLPPPPRPSKRKSEHHHHLDRDRDYDYEYDREREREREREREKERERDRNHHHRTES 401
                    RP  R+        R           R R+R R R +       H  R   
Sbjct: 50  --------SRPRDRRRYD----SRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRD 97

Query: 402 SSKHSSEPPTTTTSS----KPTSTAAAGADKKHKGSVFS 436
            S  +         S    KP       AD+     VFS
Sbjct: 98  RSPSNQWRKDDKKRSLWDIKPPGYELVTADQAKASQVFS 136

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|227510 COG5183, SSM4, Protein involved in mRNA turnover and stability [RNA processing and modification]

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 260 MGMNVPPHIMSREEFEARKADVRRKRENERRGER-EFSRDREYGREVSSGGDASSMKSKS 318
           M MN P  I+            R   + ER   R +    RE GR++SS  + + +   S
Sbjct: 220 MLMN-PRAILESIS--------RESAQLERNTARQQGEHARENGRDLSSDSNNNVINPVS 270

Query: 319 KSVPQVSSADHHHHHRHRPVRSS 341
            +VP     D  +    RPVRS+
Sbjct: 271 DNVPSRDMNDSRNVENVRPVRSN 293

Length = 1175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	542
KOG0314	448	consensus Predicted E3 ubiquitin ligase [Posttrans	99.73
KOG1902	441	consensus Putative signal transduction protein inv	97.15
KOG1902	441	consensus Putative signal transduction protein inv	94.24
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	92.76
COG5180	654	PBP1 Protein interacting with poly(A)-binding prot	92.62
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	91.51
KOG1049	538	consensus Polyadenylation factor I complex, subuni	89.04
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	87.22
KOG2888	453	consensus Putative RNA binding protein [General fu	86.61
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	86.34
COG5180	654	PBP1 Protein interacting with poly(A)-binding prot	85.51
KOG2375	756	consensus Protein interacting with poly(A)-binding	85.23

>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.1e-17  Score=174.79  Aligned_cols=186  Identities=45%  Similarity=0.632  Sum_probs=162.1

Q ss_pred             CcccCCcccccccCCCChhHHHHHHHHHhhcCCCCccCCCccceeccccccCCCCCCCCCCCCcccccccccc-CCCCCC
Q 009145            1 MCVCGATNILADDLLPNKTLRNTINRILESGNNSSAENAGSTFQVQDMESARCPPPPKVPSPTMSAASKGEQK-LSAGDK   79 (542)
Q Consensus         1 kCvCga~~VLaDDL~PN~tLR~TI~~~L~~~~~sS~en~Gs~~~~~dm~S~~~~~~pk~~Spt~SaAsk~E~K-~s~~~~   79 (542)
                      +|+|++..+|+|+|.|+++||++|+.+|+.+ |++.+|+++.++.+++++..| +.+|..+++++++|.++.+ ....++
T Consensus       258 ~~~c~~~~~~~~~~~~p~~~r~~~n~~~a~~-n~~~~~~~~~~~~~~~~~~~~-p~~k~v~~~~~~~s~~~~~~~~~~~~  335 (448)
T KOG0314|consen  258 MCVCGASNVLADDLLPPKTLRDTINRILASG-NSSGENSGSSQRTQDPESLRC-PPPKALSPTTSVASPGEKKPLPSNNN  335 (448)
T ss_pred             CCcchhhcccccccCCchhhHHHHHHHHhhh-cccccCcccccccCCCccccC-CcccccCCcccccCCCCcccCCcCCC
Confidence            5999999999999999999999999999999 999999999999999999999 8899999999999998877 777777


Q ss_pred             CCCccccccccccccccccccccccCCcccccchhhhhcccccccccCCCCCCccc-hHHHHhhhccchHHHHhhhhccC
Q 009145           80 ETPIAMETTDVGKAVITATQSVEKVPPAAKVVDVSEATLESASVKEPASQGSAPMV-DEEVQQKMASGEAAKKKKKKKVR  158 (542)
Q Consensus        80 esp~lq~~te~~k~~sa~~~s~ek~~k~~k~~DvsE~T~es~~vKE~~~~g~a~~v-~ee~qqk~a~~e~~KKKKKKk~r  158 (542)
                      .+......-+..++......+.+-  .+.+.++.+..+..+.++|+.++.-.++++ .++++|++..++..+-..|++  
T Consensus       336 ~~s~d~~~p~~~~~~~~~~~~~~g--~~~~~~~~sa~~~~~~~~~~~~~~~~~t~~P~~~~~~~~~~~~~~~~~~~~~--  411 (448)
T KOG0314|consen  336 PTSTDPQFPEGAEITSGYDVSPPG--FVPKPVDASAPWQGSSAVKEASVSILNTQAPKEEMPQQVAAGEPLKEEEKKP--  411 (448)
T ss_pred             ccccCCCCCCCCCCCCCCCCCCCC--CCCCccccccccccccccCCCCCCcCCCCCCccccccccccCCCccccccCc--
Confidence            777766666666665555444432  566889999999999999999999888888 799999999988866666553  


Q ss_pred             CCCCccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccCcccCccC
Q 009145          159 APANDLQWKTPQDLAAESCMMPLGPSAYNPPAAYNPYWTGIQPGMEG  205 (542)
Q Consensus       159 ~p~nd~qwk~~~d~a~~~YmMP~gP~~~~~~~g~NPyw~G~~Pgm~G  205 (542)
                                  |+|++.|||.++|+. ..|+|..||++|++++++|
T Consensus       412 ------------~~a~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~  445 (448)
T KOG0314|consen  412 ------------DLAGPDYMMKMGPGP-QYFNGKQPGFNGVQSGFNG  445 (448)
T ss_pred             ------------ccccchhhcccCCcc-ccCCCCCCCCCccccCCCC
Confidence                        899999999999999 8899999999999988775

>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]

Probab=97.15  E-value=0.0017  Score=68.34  Aligned_cols=31  Identities=58%  Similarity=0.860  Sum_probs=17.5

Q ss_pred             CCccchhhhhHHHHHHHHHHHHHhhhhhccc
Q 009145          365 RDRDYDYEYDREREREREREREKERERDRNH  395 (542)
Q Consensus       365 ~dr~~d~~~~r~r~~~~~~~~~~~~~~~r~~  395 (542)
                      +|++.|..++++|+|.+++|+|.++.-+|..
T Consensus       402 ~~~~~~~~~~~~~~r~~~~e~e~e~~~~r~~  432 (441)
T KOG1902|consen  402 RDRPRDNRRDRERDRGRDRERERERLCDRDR  432 (441)
T ss_pred             cccchhhhhhhhhhcccchhhhhhhhccccc
Confidence            3566666666666665555555555544443

>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]

Probab=94.24  E-value=0.12  Score=55.00  Aligned_cols=63  Identities=22%  Similarity=0.276  Sum_probs=32.2

Q ss_pred             cCCCCCccCCCCCCCccccC--------CCCC-CCCCCCCCCCCCCCCccC-----cccCccCCCCCCCCCC----CCCC
Q 009145          157 VRAPANDLQWKTPQDLAAES--------CMMP-LGPSAYNPPAAYNPYWTG-----IQPGMEGYMGPFAGAM----PYMP  218 (542)
Q Consensus       157 ~r~p~nd~qwk~~~d~a~~~--------YmMP-~gP~~~~~~~g~NPyw~G-----~~Pgm~GymGPf~gpM----P~mG  218 (542)
                      -+.|+--.+|-.+.++.-+-        |-.+ |+|+.      ||+|--|     +.|+++| |+|++|+|    ||--
T Consensus       267 G~~p~~~h~~Pg~~~~~r~q~~~~rf~g~~L~v~~Pg~------~~~y~~~f~nm~p~p~~~g-~~p~pgm~~p~~p~~q  339 (441)
T KOG1902|consen  267 GDYPPEFHQRPGYLKDPRYQEVDRRFSGVRLDVFLPGS------YNDYVREFHNMGPPPPWQG-MPPYPGMEQPPHPYYQ  339 (441)
T ss_pred             CCCCcccccCCCcCCCccccccccccCceecccccCcc------cccccchhhhcCCCccccC-cCCcCCcccCCCCccc
Confidence            34455556777666655542        2233 55655      4444322     3455555 56666665    3444


Q ss_pred             CCCCCCCC
Q 009145          219 YGMGPLDM  226 (542)
Q Consensus       219 YgmgP~gM  226 (542)
                      |..+|++|
T Consensus       340 ~~~~~~~~  347 (441)
T KOG1902|consen  340 HHAPPPQA  347 (441)
T ss_pred             cCCCCccc
Confidence            44444443

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=92.76  E-value=0.43  Score=51.13  Aligned_cols=28  Identities=50%  Similarity=0.669  Sum_probs=18.5

Q ss_pred             CCCccchhhhhHHHHHHHHHHHHHhhhhhccc
Q 009145          364 DRDRDYDYEYDREREREREREREKERERDRNH  395 (542)
Q Consensus       364 d~dr~~d~~~~r~r~~~~~~~~~~~~~~~r~~  395 (542)
                      -.||-.||-    ++|-+|+|||+|++++|++
T Consensus       463 ~~drhddY~----~er~re~erhrDrdrdr~~  490 (498)
T KOG4849|consen  463 FNDRHDDYI----IERFREQERHRDRDRDRLA  490 (498)
T ss_pred             hhhhHHHHH----HHHHHhhhhhhhhhhhhhh
Confidence            355555543    4455577888888888876

>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]

Probab=92.62  E-value=0.26  Score=54.22  Aligned_cols=8  Identities=25%  Similarity=0.235  Sum_probs=4.5

Q ss_pred             CCCCCCCC
Q 009145          178 MMPLGPSA  185 (542)
Q Consensus       178 mMP~gP~~  185 (542)
                      .|+|||..
T Consensus       517 ~~~M~~~m  524 (654)
T COG5180         517 GMNMGGMM  524 (654)
T ss_pred             cCCcccee
Confidence            45666555

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=91.51  E-value=0.092  Score=54.37  Aligned_cols=10  Identities=50%  Similarity=1.125  Sum_probs=5.8

Q ss_pred             cCCCCCCCCC
Q 009145          514 RKPSRYEPSP  523 (542)
Q Consensus       514 Rkpsrye~sp  523 (542)
                      ++|..|.++|
T Consensus       255 ~r~~~~~~~~  264 (509)
T TIGR01642       255 RRPHDYIPVP  264 (509)
T ss_pred             cCccccCCcc
Confidence            3566676554

Members of this subfamily are found in plants, metazoa and fungi.

>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]

Probab=89.04  E-value=3.3  Score=46.20  Aligned_cols=31  Identities=23%  Similarity=0.230  Sum_probs=17.7

Q ss_pred             CCCCccCcccCccCCCCCC---CCCCCCCCCCCC
Q 009145          192 YNPYWTGIQPGMEGYMGPF---AGAMPYMPYGMG  222 (542)
Q Consensus       192 ~NPyw~G~~Pgm~GymGPf---~gpMP~mGYgmg  222 (542)
                      ++|.-+++.|++.++.++-   ..+||+|-.+..
T Consensus       276 ~~~~~~~~~~~~r~g~~~~~~~~~~~p~~~a~p~  309 (538)
T KOG1049|consen  276 AEPSSNSQAPGARSGSGEPSGMSEPPPSMEAGPS  309 (538)
T ss_pred             cCCCCCccCccccCCCCCCCCCCCCCCCcCCCCC
Confidence            4566667777777765532   334455555433

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=87.22  E-value=0.45  Score=38.78  Aligned_cols=28  Identities=21%  Similarity=0.426  Sum_probs=22.0

Q ss_pred             ccCCcccccccCCCChhHHHHHHHHHhhc
Q 009145            3 VCGATNILADDLLPNKTLRNTINRILESG   31 (542)
Q Consensus         3 vCga~~VLaDDL~PN~tLR~TI~~~L~~~   31 (542)
                      +|+. .+..+||+||..||..|.+|+++.
T Consensus        44 ~t~~-~l~~~~l~pn~~Lk~~I~~~~~~~   71 (73)
T PF04564_consen   44 FTRQ-PLSESDLIPNRALKSAIEEWCAEN   71 (73)
T ss_dssp             TT-S-B-SGGGSEE-HHHHHHHHHHHHHC
T ss_pred             CCCC-cCCcccceECHHHHHHHHHHHHHc
Confidence            4544 788899999999999999999876

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2888 consensus Putative RNA binding protein [General function prediction only]

Probab=86.61  E-value=0.37  Score=51.29  Aligned_cols=24  Identities=54%  Similarity=1.006  Sum_probs=10.1

Q ss_pred             CCccchhhhhHHHHHHHHHHHHHh
Q 009145          365 RDRDYDYEYDREREREREREREKE  388 (542)
Q Consensus       365 ~dr~~d~~~~r~r~~~~~~~~~~~  388 (542)
                      +++|||+++-++|.+++||+|++|
T Consensus       330 r~~Dy~~erg~~r~~erER~rerd  353 (453)
T KOG2888|consen  330 REKDYERERGRDRYRERERDRERD  353 (453)
T ss_pred             ccccCCcccCcchhhhhhhhhhcc
Confidence            334555444344433444444333

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=86.34  E-value=5.4  Score=46.79  Aligned_cols=29  Identities=21%  Similarity=0.189  Sum_probs=13.0

Q ss_pred             hccCCCCCccCCCCCCCccccCCCCCCCC
Q 009145          155 KKVRAPANDLQWKTPQDLAAESCMMPLGP  183 (542)
Q Consensus       155 Kk~r~p~nd~qwk~~~d~a~~~YmMP~gP  183 (542)
                      |=..++++-++....--+-.-..++|+-|
T Consensus       503 Ki~~l~ae~~al~s~~~~~~~~~~iP~PP  531 (1102)
T KOG1924|consen  503 KIKLLEAEKQALSSPSQLLPIDGGIPPPP  531 (1102)
T ss_pred             hcccCchhhhhccCcccCCCCCCCCCCCC
Confidence            43455555555543333332334555433

>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]

Probab=85.51  E-value=1.8  Score=48.07  Aligned_cols=16  Identities=25%  Similarity=0.295  Sum_probs=10.0

Q ss_pred             cccccccC-CCChhHHH
Q 009145            7 TNILADDL-LPNKTLRN   22 (542)
Q Consensus         7 ~~VLaDDL-~PN~tLR~   22 (542)
                      -+|.+||- +=++.|-.
T Consensus       211 RGl~~DDSGldeEDlYS  227 (654)
T COG5180         211 RGLGNDDSGLDEEDLYS  227 (654)
T ss_pred             cCccccccCcchhhhhh
Confidence            36677777 66666643

>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]

Probab=85.23  E-value=2.2  Score=49.16  Aligned_cols=15  Identities=27%  Similarity=0.273  Sum_probs=7.7

Q ss_pred             hcccCCCCcCcCCCC
Q 009145          392 DRNHHHRTESSSKHS  406 (542)
Q Consensus       392 ~r~~~~rs~~~~~~~  406 (542)
                      -.+|+|-+..++.+-
T Consensus       708 ~~~~~~~s~~ss~~~  722 (756)
T KOG2375|consen  708 SFSHSNASTSSSLKA  722 (756)
T ss_pred             cccccccCccccccc
Confidence            345555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	542
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	1e-06
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	4e-06
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	6e-06
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	4e-05
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	7e-05
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	8e-05
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	9e-05
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	1e-04
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	4e-04

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 32/156 (20%), Positives = 52/156 (33%)

Query: 265 PPHIMSREEFEARKADVRRKRENERRGEREFSRDREYGREVSSGGDASSMKSKSKSVPQV 324
                SR     R++  R K E  R  ER   +DR+  R  S   + +  + + K   + 
Sbjct: 252 RERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRG 311

Query: 325 SSADHHHHHRHRPVRSSPEPPLPPPPRPSKRKSEHHHHLDRDRDYDYEYDRERERERERE 384
              D               PP    P       E     DR+R   +  +RER R+R+R+
Sbjct: 312 GGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRD 371

Query: 385 REKERERDRNHHHRTESSSKHSSEPPTTTTSSKPTS 420
           R+++RE  R          +            +   
Sbjct: 372 RDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLG 407

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 27/138 (19%), Positives = 49/138 (35%)

Query: 270 SREEFEARKADVRRKRENERRGEREFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADH 329
            +E    R     R+R +  R + E  R RE  ++        S +S+ ++  +    + 
Sbjct: 249 DKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEE 308

Query: 330 HHHHRHRPVRSSPEPPLPPPPRPSKRKSEHHHHLDRDRDYDYEYDREREREREREREKER 389
                      S     PP   P             ++  D + +R R    ERER ++R
Sbjct: 309 LRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDR 368

Query: 390 ERDRNHHHRTESSSKHSS 407
           +RDR+     +   + S 
Sbjct: 369 DRDRDRDREHKRGERGSE 386

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 32/143 (22%), Positives = 44/143 (30%)

Query: 266 PHIMSREEFEARKADVRRKRENERRGEREFSRDREYGREVSSGGDASSMKSKSKSVPQVS 325
               SRE  + R+    R R+  RR       +R   RE S   D    +  S+S  +  
Sbjct: 241 RRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR 300

Query: 326 SADHHHHHRHRPVRSSPEPPLPPPPRPSKRKSEHHHHLDRDRDYDYEYDRERERERERER 385
                            EP       P             D   +   DR+RER R    
Sbjct: 301 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS 360

Query: 386 EKERERDRNHHHRTESSSKHSSE 408
           E+ER RDR+     +   K    
Sbjct: 361 ERERRRDRDRDRDRDREHKRGER 383

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 24/179 (13%), Positives = 45/179 (25%)

Query: 232 MPQEPFAAQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRG 291
                   +G     +                  P      + +  +    R RE ++  
Sbjct: 193 GGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRERDKER 252

Query: 292 EREFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPLPPPPR 351
           ER  SR R+  R   S       +S+ +S  +               R   E        
Sbjct: 253 ERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGG 312

Query: 352 PSKRKSEHHHHLDRDRDYDYEYDREREREREREREKERERDRNHHHRTESSSKHSSEPP 410
                           D           +   E+ ++R+R+R   HR+E   +   +  
Sbjct: 313 GGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRD 371

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 44.5 bits (104), Expect = 7e-05
 Identities = 16/139 (11%), Positives = 33/139 (23%)

Query: 270 SREEFEARKADVRRKRENERRGEREFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADH 329
            +      +   RR+RE +           E      +  D           P       
Sbjct: 288 RKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKG 347

Query: 330 HHHHRHRPVRSSPEPPLPPPPRPSKRKSEHHHHLDRDRDYDYEYDREREREREREREKER 389
               R R      E          + +   H   +R  +   +  R     ++   E   
Sbjct: 348 RDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLG 407

Query: 390 ERDRNHHHRTESSSKHSSE 408
              R+ +  +E    + + 
Sbjct: 408 NDSRDMYMESEGGDGYLAP 426

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 21/175 (12%), Positives = 38/175 (21%)

Query: 234 QEPFAAQGYMMPVVPPQRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGER 293
                             ++   G                    +   R +   ER  ER
Sbjct: 189 PRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERRERSRER 248

Query: 294 EFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPLPPPPRPS 353
           +  R+R   R       + S   + +   +  S D     + R  RS          +  
Sbjct: 249 DKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEE 308

Query: 354 KRKSEHHHHLDRDRDYDYEYDREREREREREREKERERDRNHHHRTESSSKHSSE 408
            R          +       D           +   E+ R+       S +   E
Sbjct: 309 LRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERE 363

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 26/163 (15%), Positives = 44/163 (26%)

Query: 270 SREEFEARKADVRRKRENERRGEREFSRDREYGREVSSGGDASSMKSKSKSVPQVSSADH 329
              + E R+    R ++ +R  +R  SR RE  R      +         + P  +    
Sbjct: 267 RSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAP 326

Query: 330 HHHHRHRPVRSSPEPPLPPPPRPSKRKSEHHHHLDRDRDYDYEYDREREREREREREKER 389
                   +            R   R+    H  +R+R  D + DR+R+RE +R      
Sbjct: 327 PDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSE 386

Query: 390 ERDRNHHHRTESSSKHSSEPPTTTTSSKPTSTAAAGADKKHKG 432
                                  +      S    G      G
Sbjct: 387 RGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENG 429

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 15/160 (9%), Positives = 31/160 (19%)

Query: 250 QRDLAEFGMGMGMNVPPHIMSREEFEARKADVRRKRENERRGEREFSRDREYGREVSSGG 309
           +R     G            +R            + +  R  ER       +        
Sbjct: 179 ERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRE 238

Query: 310 DASSMKSKSKSVPQVSSADHHHHHRHRPVRSSPEPPLPPPPRPSKRKSEHHHHLDRDRDY 369
                +S+ +   +          R R      E       R   +  +      R R+ 
Sbjct: 239 RERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRER 298

Query: 370 DYEYDREREREREREREKERERDRNHHHRTESSSKHSSEP 409
                  +E  R    +     +       +         
Sbjct: 299 ARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPD 338

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 3  VCGATNILADDLLPNKTLRNTINRILES 30
           C   ++  D L+ NK LR  +N     
Sbjct: 55 TCHQNDVSPDALIANKFLRQAVNNFKNE 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	542
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	92.62
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	90.26
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	80.67

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=92.62  E-value=0.02  Score=58.47  Aligned_cols=13  Identities=38%  Similarity=0.687  Sum_probs=6.3

Q ss_pred             cCCccCCCCCCCcc
Q 009145          466 SGHQKLPTNTNGYY  479 (542)
Q Consensus       466 ~~~~~~~~~~~~~~  479 (542)
                      +||-.+++ .|||-
T Consensus       419 ~~~~~~~~-~~~~~  431 (437)
T 3pgw_S          419 GGDGYLAP-ENGYL  431 (437)
T ss_pred             CCCcccCC-Ccccc
Confidence            34544444 45553

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=90.26  E-value=0.22  Score=41.40  Aligned_cols=30  Identities=23%  Similarity=0.400  Sum_probs=25.0

Q ss_pred             ccCCcccccccCCCChhHHHHHHHHHhhcCC
Q 009145            3 VCGATNILADDLLPNKTLRNTINRILESGNN   33 (542)
Q Consensus         3 vCga~~VLaDDL~PN~tLR~TI~~~L~~~~~   33 (542)
                      +|+. .+..++|+||..|+..|..|++....
T Consensus        62 ~~~~-~l~~~~L~pn~~Lk~~I~~~~~~~~~   91 (98)
T 1wgm_A           62 FNRS-PLTMDQIRPNTELKEKIQRWLAERKQ   91 (98)
T ss_dssp             TTCS-BCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred             CCCC-CCChhhceEcHHHHHHHHHHHHHcch
Confidence            4555 66778999999999999999998833

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.67  E-value=1.2  Score=36.15  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=21.6

Q ss_pred             cccccCCCChhHHHHHHHHHhhc
Q 009145            9 ILADDLLPNKTLRNTINRILESG   31 (542)
Q Consensus         9 VLaDDL~PN~tLR~TI~~~L~~~   31 (542)
                      +..+||+||..|+..|..|++..
T Consensus        61 l~~~~L~pn~~L~~~I~~~~~~~   83 (94)
T 2yu4_A           61 IRKSDLIQDEALRRAIENHNKKR   83 (94)
T ss_dssp             BCGGGEEECHHHHHHHHHHHTTC
T ss_pred             cCHhhCcCCHHHHHHHHHHHHHh
Confidence            77899999999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	542
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	95.59
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	87.1
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	83.98

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0041  Score=50.07  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=28.5

Q ss_pred             cccCCcccccccCCCChhHHHHHHHHHhhcCCCCc
Q 009145            2 CVCGATNILADDLLPNKTLRNTINRILESGNNSSA   36 (542)
Q Consensus         2 CvCga~~VLaDDL~PN~tLR~TI~~~L~~~~~sS~   36 (542)
                      |+|+. .|..|+|+||..||..|.+||+.+..-+.
T Consensus        61 P~~~~-~l~~~~L~pN~~Lr~~I~~~~~~~~~~~~   94 (98)
T d1wgma_          61 PFNRS-PLTMDQIRPNTELKEKIQRWLAERKQQSG   94 (98)
T ss_dssp             TTTCS-BCCTTTSEECHHHHHHHHHHHHHSTTCSC
T ss_pred             ccccc-cccchhhcchHHHHHHHHHHHHHHHHhcc
Confidence            46776 79999999999999999999999944443

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.10  E-value=0.14  Score=38.73  Aligned_cols=28  Identities=18%  Similarity=0.481  Sum_probs=24.7

Q ss_pred             ccCCcccccccCCCChhHHHHHHHHHhhc
Q 009145            3 VCGATNILADDLLPNKTLRNTINRILESG   31 (542)
Q Consensus         3 vCga~~VLaDDL~PN~tLR~TI~~~L~~~   31 (542)
                      +|+. .+..++|.||..|+..|.+||++.
T Consensus        47 ~c~~-~l~~~~l~pN~~L~~~I~~~l~~~   74 (80)
T d2c2la2          47 VTRS-PLTQEQLIPNLAMKEVIDAFISEN   74 (80)
T ss_dssp             TTCC-CCCGGGCEECHHHHHHHHHHHTTC
T ss_pred             Cccc-cccccccccHHHHHHHHHHHHHHC
Confidence            4565 789999999999999999999875

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.98  E-value=0.2  Score=37.64  Aligned_cols=30  Identities=30%  Similarity=0.401  Sum_probs=24.3

Q ss_pred             cccCCcccccccCCCChhHHHHHHHHHhhc
Q 009145            2 CVCGATNILADDLLPNKTLRNTINRILESG   31 (542)
Q Consensus         2 CvCga~~VLaDDL~PN~tLR~TI~~~L~~~   31 (542)
                      |.+-...+..++|+||.+|+..|.+||++.
T Consensus        46 cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~   75 (78)
T d1t1ha_          46 CPKSQETLLHAGLTPNYVLKSLIALWCESN   75 (78)
T ss_dssp             CTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred             CCcccccCCcccccchHHHHHHHHHHHHHh
Confidence            333334788899999999999999999865