Citrus Sinensis ID: 009169

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-
MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMNREKSHGSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMPKDRPLRRKLGPDNRLKDERGNRRDRDYRANGSDRYDRSDNAQASDFPSNDDVPEGANRDESMFDTFGGQGIRVAPPFPSDIPPPPVLMPVPGAGPLGPFVPAPPEVAMQMIRDQGGPPFEGGGRHGRPGPQISGPGPILLSPAFRQDPRRIRSYQDLDAPEDEVTVMDYRSL
ccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEcccccccccEEEEEcccc
MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFfdahkdeewlkdkyhptnLVAVIERRNDLARKVAKDFLLDLQsgtldlgpsvnasssnklgqtsepnsdddvdnggkrrrhgrgpaketdllsaapkahpisseprrIQVDIEQAQALVRKLdsekgitenilcgsdndkmnrekshgstgpviIIRGltsvkglegvELLDTLITYLWRIHgvdyygmvetseakglrhvraegkssditnngAEWEKKLDFRWQerlrsqdpleiMTAKDKIDAAAVDALDPFVRKirdekygwkygcgakgctklFHAAEFVHKHLKLKHPELVIELTSKVREELYFQnymndpdapggtpvmqqpmpkdrplrrklgpdnrlkdergnrrdrdyrangsdrydrsdnaqasdfpsnddvpeganrdesmfdtfggqgirvappfpsdippppvlmpvpgagplgpfvpappeVAMQMIRdqggppfegggrhgrpgpqisgpgpillspafrqdprrirsyqdldapedevtvMDYRSL
MSYKQFIQEleddilpaEAERRYQEYKSEYISTQKRVFFDAHKDeewlkdkyhptnLVAVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNAsssnklgqtsepnsdddvdnggkrrrhgrgpaketdllsaapkahpisseprriQVDIEQAQALVrkldsekgitenilcgsdndkmnrekshgstgpviiIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGlrhvraegkssditnngaewekKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMpkdrplrrklgpdnrlkdergnrrdrdyrangsdrydrsdnaqasdfpsnddvpegANRDESMFDTFGGQGIRVAPPFPSDIPPPPVLMPVPGAGPLGPFVPAPPEVAMQMIRDQGGPPFEGGGRHGRPGPQISGPGPILLSPAFRQDPRRIRsyqdldapedevtvmdyrsl
MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMNREKSHGSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTakdkidaaavdaldPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMPKDRPLRRKLGPDNRLKDERGNRRDRDYRANGSDRYDRSDNAQASDFPSNDDVPEGANRDESMFDTFGGQGIRVAppfpsdippppvlmpvpgagplgpFVPAPPEVAMQMIRDQggppfegggrhgrpgpQISGPGPILLSPAFRQDPRRIRSYQDLDAPEDEVTVMDYRSL
**********************YQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSG***************************************************************************************IL*****************GPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETS**********************EWEKKLDFRWQERLR***PLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYM*********************************************************************************************************************************************************************************************
MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVI******ARKVAKDFLLDLQSGTLD************************************************PKAHPISSEPRRIQVDIEQAQALVRKLDSEKGI*************************************EGVELLDTLITYLWRIHGVDYYGMVETSEAKG*******************WEKKLDFRWQERLRSQDPLEIMT**DKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMND***********************************************************************************************************AGPLG********************************************************YQDLDAPEDEVTVMDYRSL
MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNA*********************************ETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMNREKSHGSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMPKDRPLRRKLGPDNRLKDERGNRRDRDYRANGSDRYDRSDNAQASDFPSNDDVPEGANRDESMFDTFGGQGIRVAPPFPSDIPPPPVLMPVPGAGPLGPFVPAPPEVAMQMIRDQGGPPFEGGGRHGRPGPQISGPGPILLSPAFRQDPRRIRSYQDLDAPEDEVTVMDYRSL
*SYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSGTLDL*P****************************************************SEPRRIQVDIEQAQALVRKLDSEKGITE*IL***************STGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHVRAEGKS***TNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPD**********************************RRD****ANGSDRYDRSDNAQASDFPSNDDVPEGANRDESMFDTFGGQGIRVAPPFPSDIPPPPVLMPVPGAGPLGPFVPAPPEVAMQMIRDQGGPPFEGGGRHGRPGPQISGPGPILLSPAFRQDPRRIRSYQDLDAPEDEVTVMDYRSL
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MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMNREKSHGSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMPKDRPLRRKLGPDNRLKDERGNRRDRDYRANGSDRYDRSDNAQASDFPSNDDVPEGANRDESMFDTFGGQGIRVAPPFPSDIPPPPVLMPVPGAGPLGPFVPAPPEVAMQMIRDQGGPPFEGGGRHGRPGPQISGPGPILLSPAFRQDPRRIRSYQDLDAPEDEVTVMDYRSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query541 2.2.26 [Sep-21-2011]
Q9ZVD0720 Serrate RNA effector mole yes no 0.964 0.725 0.735 0.0
B4KLY7 980 Serrate RNA effector mole N/A no 0.134 0.074 0.380 2e-10
Q28WQ8 951 Serrate RNA effector mole yes no 0.171 0.097 0.375 3e-10
B4H732 951 Serrate RNA effector mole N/A no 0.171 0.097 0.375 3e-10
B4LIK8 963 Serrate RNA effector mole N/A no 0.116 0.065 0.380 3e-10
Q9V9K7 943 Serrate RNA effector mole yes no 0.134 0.077 0.369 7e-10
B3MJ69 948 Serrate RNA effector mole N/A no 0.134 0.077 0.369 8e-10
B4NYV0 944 Serrate RNA effector mole N/A no 0.134 0.077 0.369 1e-09
B4MR46 1000 Serrate RNA effector mole N/A no 0.123 0.067 0.357 1e-09
B4J497 1011 Serrate RNA effector mole N/A no 0.179 0.095 0.346 1e-09
>sp|Q9ZVD0|SRRT_ARATH Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1 SV=2 Back     alignment and function desciption
 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/544 (73%), Positives = 448/544 (82%), Gaps = 22/544 (4%)

Query: 1   MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAV 60
           MSYKQFIQELEDDILP+EAERRYQEYKSEYI+TQKR FF+ HK+E+WLK+KYHPTNL++V
Sbjct: 196 MSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYHPTNLLSV 255

Query: 61  IERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHG 120
           IERRNDLA+KVAKDFLLDLQSGTLDLGP+V A   NK G+TSEPNS+D+    GKR+RHG
Sbjct: 256 IERRNDLAQKVAKDFLLDLQSGTLDLGPAVTAL--NKSGRTSEPNSEDEAAGVGKRKRHG 313

Query: 121 RGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMN 180
            G AKE +LLSAAPKA   +S+P+RI  D+EQ QALVRKLDSEK I EN+L GS+ +K  
Sbjct: 314 MGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKLDSEKKIEENVLQGSETEKSG 373

Query: 181 REKSH-GSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHV 239
           REK H GSTGPV+IIRGLTSVKGLEGVELLDTL+TYLWR+HG+DYYG VET+EAKGLRHV
Sbjct: 374 REKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGLRHV 433

Query: 240 RAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRD 299
           RAEGK SD    G E E K D  WQERL+ QDPLE+M AK+KIDAAA +ALDP VRKIRD
Sbjct: 434 RAEGKVSDA--KGDENESKFDSHWQERLKGQDPLEVMAAKEKIDAAATEALDPHVRKIRD 491

Query: 300 EKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPG 359
           EKYGWKYGCGAKGCTKLFHAAEFV+KHLKLKH ELV ELT+KVREELYFQNYMNDP+APG
Sbjct: 492 EKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREELYFQNYMNDPNAPG 551

Query: 360 GTPVMQQPMPKDRPLRRKLGPDNRLKDERGNRRDRDYRANGSDRYDRSDNAQASDFPSND 419
           G P  QQ  P+DRP+RRK   +NRL+D+RG RR+RD RANG+DR DRS++ Q  D   ND
Sbjct: 552 GQPATQQSGPRDRPIRRKPSMENRLRDDRGGRRERDGRANGNDRNDRSEDQQRGD---ND 608

Query: 420 DVPEGANRDESMFDTFGGQGIRVAPPFPSDIPPPPVLMPVPGAGPLGPFVPAPPEVAMQM 479
               G N  E  +D FGGQG    PPF SDI PPP+LMPVPGAGPLGPFVPAPPEVAMQM
Sbjct: 609 ----GGNPGEVGYDAFGGQGGVHVPPFLSDINPPPMLMPVPGAGPLGPFVPAPPEVAMQM 664

Query: 480 IRDQGG--PPFEGGGRHGRPGPQISGPGPILLSPAFRQDPRRIRSYQDLDAPEDEVTVMD 537
            RD  G  PPFEG GR         GP P LLSPAFRQDPRR+RSYQDLDAPE+EVTV+D
Sbjct: 665 FRDPSGPNPPFEGSGR--------GGPAPFLLSPAFRQDPRRLRSYQDLDAPEEEVTVID 716

Query: 538 YRSL 541
           YRSL
Sbjct: 717 YRSL 720
Acts as a mediator between the cap-binding complex (CBC) and both the pre-mRNA splicing and primary microRNAs (miRNAs) processing machinery. Required for proper processing of primary miRNAs to miRNAs, thereby playing a role in RNA-mediated gene silencing (RNAi) by miRNAs. Does not participate in sense post-transcriptional gene silencing. Acts as a regulator of meristem activity and adaxial leaf fate via the miRNA gene-silencing pathway by regulating the expression of PHB and by limiting the competence of shoot tissue to respond to KNOX expression. Its function is however not limited to miRNA-mediated repression of leaf polarity genes, but rather acts as a general regulator of primary microRNAs processing. Also critical for the accumulation of the trans-acting small interfering RNA (ta-siRNA). Required for pre-mRNA splicing.
Arabidopsis thaliana (taxid: 3702)
>sp|B4KLY7|SRRT_DROMO Serrate RNA effector molecule homolog OS=Drosophila mojavensis GN=Ars2 PE=3 SV=1 Back     alignment and function description
>sp|Q28WQ8|SRRT_DROPS Serrate RNA effector molecule homolog OS=Drosophila pseudoobscura pseudoobscura GN=Ars2 PE=3 SV=2 Back     alignment and function description
>sp|B4H732|SRRT_DROPE Serrate RNA effector molecule homolog OS=Drosophila persimilis GN=Ars2 PE=3 SV=1 Back     alignment and function description
>sp|B4LIK8|SRRT_DROVI Serrate RNA effector molecule homolog OS=Drosophila virilis GN=Ars2 PE=3 SV=1 Back     alignment and function description
>sp|Q9V9K7|SRRT_DROME Serrate RNA effector molecule homolog OS=Drosophila melanogaster GN=Ars2 PE=1 SV=2 Back     alignment and function description
>sp|B3MJ69|SRRT_DROAN Serrate RNA effector molecule homolog OS=Drosophila ananassae GN=Ars2 PE=3 SV=1 Back     alignment and function description
>sp|B4NYV0|SRRT_DROYA Serrate RNA effector molecule homolog OS=Drosophila yakuba GN=Ars2 PE=3 SV=1 Back     alignment and function description
>sp|B4MR46|SRRT_DROWI Serrate RNA effector molecule homolog OS=Drosophila willistoni GN=Ars2 PE=3 SV=1 Back     alignment and function description
>sp|B4J497|SRRT_DROGR Serrate RNA effector molecule homolog OS=Drosophila grimshawi GN=Ars2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query541
255561268 823 arsenite-resistance protein, putative [R 0.998 0.656 0.848 0.0
359479066605 PREDICTED: serrate RNA effector molecule 0.992 0.887 0.832 0.0
296083972 735 unnamed protein product [Vitis vinifera] 0.992 0.730 0.832 0.0
225465363 748 PREDICTED: serrate RNA effector molecule 0.998 0.721 0.765 0.0
449452660 755 PREDICTED: serrate RNA effector molecule 0.996 0.713 0.803 0.0
449452662 751 PREDICTED: serrate RNA effector molecule 0.996 0.717 0.803 0.0
296085418 724 unnamed protein product [Vitis vinifera] 0.959 0.716 0.751 0.0
147804970 1184 hypothetical protein VITISV_035521 [Viti 0.961 0.439 0.758 0.0
356510406 711 PREDICTED: serrate RNA effector molecule 0.970 0.738 0.722 0.0
356517728 715 PREDICTED: serrate RNA effector molecule 0.970 0.734 0.726 0.0
>gi|255561268|ref|XP_002521645.1| arsenite-resistance protein, putative [Ricinus communis] gi|223539157|gb|EEF40752.1| arsenite-resistance protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/543 (84%), Positives = 506/543 (93%), Gaps = 3/543 (0%)

Query: 1   MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAV 60
           MSYKQFIQELEDD+LPAEAERRYQEYKSEYISTQKRVFF+AHKDEEWLKDKYHPTNLVAV
Sbjct: 282 MSYKQFIQELEDDVLPAEAERRYQEYKSEYISTQKRVFFEAHKDEEWLKDKYHPTNLVAV 341

Query: 61  IERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHG 120
           IERRN+LARK AKDFLLDLQSGTLDLGP +N  SSNK GQTS+PNSDD+VD  GKRRRHG
Sbjct: 342 IERRNELARKAAKDFLLDLQSGTLDLGPGINVLSSNKSGQTSDPNSDDEVDTSGKRRRHG 401

Query: 121 RGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMN 180
           R PAKE D+LSAAPKAHP+SSEPRRIQ+D+EQAQALVRKLDSEKGI ENIL GSDN+KMN
Sbjct: 402 RAPAKENDILSAAPKAHPVSSEPRRIQIDVEQAQALVRKLDSEKGIEENILGGSDNEKMN 461

Query: 181 REKSHGST-GPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHV 239
           REK HGS+ GPVIIIRGLTSVKGLEG+ELLDTLITYLWR+HG+DYY MVET+EAKG+RHV
Sbjct: 462 REKPHGSSSGPVIIIRGLTSVKGLEGIELLDTLITYLWRVHGLDYYRMVETTEAKGVRHV 521

Query: 240 RAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRD 299
           RAEGKSSD+ N+G EWEKKLD RWQERLRSQDPLE+MTAK+KI+A AV++LDP+VRKIRD
Sbjct: 522 RAEGKSSDVNNSGMEWEKKLDSRWQERLRSQDPLEVMTAKEKIEATAVESLDPYVRKIRD 581

Query: 300 EKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPG 359
           EKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELV+ELTSK+RE+LYFQNYMNDPDAPG
Sbjct: 582 EKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVMELTSKLREDLYFQNYMNDPDAPG 641

Query: 360 GTPVMQQPMPKDRPLRRKLGPDNRLKDERGNRRDRDYRANGSDRYDRSDNAQASDFPSND 419
           GTPVMQQP+PKD+P RRKLGP+NRLKDERGNRR+ D RANGS+R+DRS+N Q  DF SN+
Sbjct: 642 GTPVMQQPLPKDKPQRRKLGPENRLKDERGNRREHDSRANGSERFDRSENPQTGDFQSNN 701

Query: 420 DVPEGANRDESMFDTFGGQGIRVAPPFPSDIPPPPVLMPVPGAGPLGPFVPAPPEVAMQM 479
           D P+G N D+ M+D FGGQGI V P FPSDIPPPPVLMPVPGAGPLGPFVPAPPEVAM+M
Sbjct: 702 DGPDGGNHDDGMYDNFGGQGIHV-PSFPSDIPPPPVLMPVPGAGPLGPFVPAPPEVAMRM 760

Query: 480 IRDQGG-PPFEGGGRHGRPGPQISGPGPILLSPAFRQDPRRIRSYQDLDAPEDEVTVMDY 538
            R+QGG PPFE GGR+GRPGPQ+SGP PILLSPAFRQDPRRIRSYQDLDAP+DEVTV+DY
Sbjct: 761 FREQGGPPPFESGGRNGRPGPQLSGPAPILLSPAFRQDPRRIRSYQDLDAPDDEVTVIDY 820

Query: 539 RSL 541
           RSL
Sbjct: 821 RSL 823

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479066|ref|XP_002270387.2| PREDICTED: serrate RNA effector molecule [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083972|emb|CBI24360.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225465363|ref|XP_002273262.1| PREDICTED: serrate RNA effector molecule-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449452660|ref|XP_004144077.1| PREDICTED: serrate RNA effector molecule-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449452662|ref|XP_004144078.1| PREDICTED: serrate RNA effector molecule-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|296085418|emb|CBI29150.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147804970|emb|CAN71440.1| hypothetical protein VITISV_035521 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356510406|ref|XP_003523929.1| PREDICTED: serrate RNA effector molecule-like [Glycine max] Back     alignment and taxonomy information
>gi|356517728|ref|XP_003527538.1| PREDICTED: serrate RNA effector molecule-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query541
TAIR|locus:2059294720 SE "SERRATE" [Arabidopsis thal 0.968 0.727 0.664 4.1e-184
DICTYBASE|DDB_G0277375 1068 DDB_G0277375 "RNA recognition 0.179 0.090 0.373 3.9e-28
UNIPROTKB|B4QCR6 947 Ars2 "Serrate RNA effector mol 0.175 0.100 0.37 1.4e-20
UNIPROTKB|Q6INH5844 srrt-b "Serrate RNA effector m 0.406 0.260 0.264 7e-20
UNIPROTKB|B4II37 947 Ars2 "Serrate RNA effector mol 0.179 0.102 0.336 1.9e-19
UNIPROTKB|B4KLY7 980 Ars2 "Serrate RNA effector mol 0.179 0.098 0.357 3.5e-19
FB|FBgn0033062 943 Ars2 [Drosophila melanogaster 0.179 0.102 0.346 4.2e-19
UNIPROTKB|B3N3F7 947 Ars2 "Serrate RNA effector mol 0.277 0.158 0.310 7.1e-19
UNIPROTKB|B4LIK8 963 Ars2 "Serrate RNA effector mol 0.290 0.163 0.296 8.7e-19
UNIPROTKB|B4MR46 1000 Ars2 "Serrate RNA effector mol 0.341 0.185 0.262 1.6e-18
TAIR|locus:2059294 SE "SERRATE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1786 (633.8 bits), Expect = 4.1e-184, P = 4.1e-184
 Identities = 360/542 (66%), Positives = 405/542 (74%)

Query:     1 MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAV 60
             MSYKQFIQELEDDILP+EAERRYQEYKSEYI+TQKR FF+ HK+E+WLK+KYHPTNL++V
Sbjct:   196 MSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYHPTNLLSV 255

Query:    61 IERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHG 120
             IERRNDLA+KVAKDFLLDLQSGTLDLGP+V A   NK G+TSEPNS+D+    GKR+RHG
Sbjct:   256 IERRNDLAQKVAKDFLLDLQSGTLDLGPAVTAL--NKSGRTSEPNSEDEAAGVGKRKRHG 313

Query:   121 RGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMN 180
              G AKE +LLSAAPKA   +S+P+RI  D+EQ QALVRKLDSEK I EN+L GS+ +K  
Sbjct:   314 MGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKLDSEKKIEENVLQGSETEKSG 373

Query:   181 REKSH-GSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHV 239
             REK H GSTGPV+IIRGLTSVKGLEGVELLDTL+TYLWR+HG+DYYG VET+EAKGLRHV
Sbjct:   374 REKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGLRHV 433

Query:   240 RAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTXXXXXXXXXXXXXXPFVRKIRD 299
             RAEGK SD    G E E K D  WQERL+ QDPLE+M               P VRKIRD
Sbjct:   434 RAEGKVSDA--KGDENESKFDSHWQERLKGQDPLEVMAAKEKIDAAATEALDPHVRKIRD 491

Query:   300 EKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPG 359
             EKYGWKYGCGAKGCTKLFHAAEFV+KHLKLKH ELV ELT+KVREELYFQNYMNDP+APG
Sbjct:   492 EKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREELYFQNYMNDPNAPG 551

Query:   360 GTPVMQQPMPKDRPLRRKLGPDNRLKDERGNRRDRDYRANGSDRYDRSDNAQASDFPSND 419
             G P  QQ  P+DRP+RRK   +NRL+D+RG RR+RD RANG+DR DRS++ Q  D   ND
Sbjct:   552 GQPATQQSGPRDRPIRRKPSMENRLRDDRGGRRERDGRANGNDRNDRSEDQQRGD---ND 608

Query:   420 DVPEGANRDESMFDTFGGQGIRVAXXXXXXXXXXXXXXXXXXXXXXXXFVPAPPEVAMQM 479
                 G N  E  +D FGGQG                            FVPAPPEVAMQM
Sbjct:   609 ----GGNPGEVGYDAFGGQGGVHVPPFLSDINPPPMLMPVPGAGPLGPFVPAPPEVAMQM 664

Query:   480 IRDQXXXXXXXXXXXXXXXXQISGPGPILLSPAFRQDPRRIRSYQDLDAPEDEVTVMDYR 539
              RD                    GP P LLSPAFRQDPRR+RSYQDLDAPE+EVTV+DYR
Sbjct:   665 FRDPSGPNPPFEGSGR------GGPAPFLLSPAFRQDPRRLRSYQDLDAPEEEVTVIDYR 718

Query:   540 SL 541
             SL
Sbjct:   719 SL 720
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;ISS;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0048367 "shoot system development" evidence=IMP
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0003677 "DNA binding" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0016568 "chromatin modification" evidence=TAS
GO:0009507 "chloroplast" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0048509 "regulation of meristem development" evidence=IMP
GO:2000011 "regulation of adaxial/abaxial pattern formation" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=IMP
GO:0031053 "primary miRNA processing" evidence=IMP
GO:0010445 "nuclear dicing body" evidence=IDA
GO:0016607 "nuclear speck" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0008380 "RNA splicing" evidence=IMP
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0007346 "regulation of mitotic cell cycle" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
DICTYBASE|DDB_G0277375 DDB_G0277375 "RNA recognition motif-containing protein RRM" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|B4QCR6 Ars2 "Serrate RNA effector molecule homolog" [Drosophila simulans (taxid:7240)] Back     alignment and assigned GO terms
UNIPROTKB|Q6INH5 srrt-b "Serrate RNA effector molecule homolog B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|B4II37 Ars2 "Serrate RNA effector molecule homolog" [Drosophila sechellia (taxid:7238)] Back     alignment and assigned GO terms
UNIPROTKB|B4KLY7 Ars2 "Serrate RNA effector molecule homolog" [Drosophila mojavensis (taxid:7230)] Back     alignment and assigned GO terms
FB|FBgn0033062 Ars2 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|B3N3F7 Ars2 "Serrate RNA effector molecule homolog" [Drosophila erecta (taxid:7220)] Back     alignment and assigned GO terms
UNIPROTKB|B4LIK8 Ars2 "Serrate RNA effector molecule homolog" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms
UNIPROTKB|B4MR46 Ars2 "Serrate RNA effector molecule homolog" [Drosophila willistoni (taxid:7260)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZVD0SRRT_ARATHNo assigned EC number0.73520.96480.725yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017374001
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (715 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query541
pfam12066110 pfam12066, DUF3546, Domain of unknown function (DU 7e-32
pfam04959211 pfam04959, ARS2, Arsenite-resistance protein 2 0.001
>gnl|CDD|192930 pfam12066, DUF3546, Domain of unknown function (DUF3546) Back     alignment and domain information 
 Score =  118 bits (297), Expect = 7e-32
 Identities = 43/84 (51%), Positives = 57/84 (67%)

Query: 2  SYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVI 61
          ++KQF++  +DDI PAEAE+RYQEYK+E+   Q + FFD HKDEEW ++KYHP  L    
Sbjct: 1  TFKQFLESQDDDISPAEAEKRYQEYKTEFRRKQLQDFFDQHKDEEWFREKYHPEELAKRR 60

Query: 62 ERRNDLARKVAKDFLLDLQSGTLD 85
          E R +L +     FL  L+SGT D
Sbjct: 61 EERRELRKNRLNVFLELLESGTFD 84

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 93 to 114 amino acids in length. This domain has two completely conserved Y residues that may be functionally important. Length = 110
>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 541
KOG2295648 consensus C2H2 Zn-finger protein [General function 100.0
PF04959214 ARS2: Arsenite-resistance protein 2; InterPro: IPR 100.0
PF12066110 DUF3546: Domain of unknown function (DUF3546); Int 99.93
KOG2295648 consensus C2H2 Zn-finger protein [General function 98.7
PF1382155 DUF4187: Domain of unknown function (DUF4187) 98.13
PF1389424 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP 90.66
PF0009623 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070 90.56
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 89.69
smart0045135 ZnF_U1 U1-like zinc finger. Family of C2H2-type zi 86.34
PF1217127 zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi 82.94
KOG1994268 consensus Predicted RNA binding protein, contains 82.72
KOG0717508 consensus Molecular chaperone (DnaJ superfamily) [ 82.55
PF12756100 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 80.6
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1e-73  Score=604.91  Aligned_cols=428  Identities=33%  Similarity=0.395  Sum_probs=352.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHhhcCCcchHHHHH-------------HHHHHHHHHHHHHHH
Q 009169           11 EDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIE-------------RRNDLARKVAKDFLL   77 (541)
Q Consensus        11 ~D~isp~eA~~~Y~eYK~e~~~kq~r~FF~~HK~EeWFrEKY~P~~l~~~~e-------------~R~e~~~~~a~~F~~   77 (541)
                      +|++.+..+++.|++| .+|. +|.++||..||...||..+|+|.++.+.++             +++-.+...+..|+-
T Consensus       200 ddd~d~s~~ee~e~e~-se~~-tqksa~~n~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lw  277 (648)
T KOG2295|consen  200 DDDTDDSILEENEPEL-SEWG-TQKSANDNTHKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLW  277 (648)
T ss_pred             ccccCcccccccchhh-hhhh-hhhhhhhhhhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhh
Confidence            8999999999999999 8887 899999999999999999999999988887             455677778888888


Q ss_pred             HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcccccc-cCCCCCCCCCChhhHHHhHHHHHHH
Q 009169           78 DLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLS-AAPKAHPISSEPRRIQVDIEQAQAL  156 (541)
Q Consensus        78 dLesG~lD~~p~~~~~~~~~~G~~sd~n~~~e~d~~~K~~R~gw~~~ke~d~~s-~aPka~pi~S~p~RI~~Dl~qa~~L  156 (541)
                      .+.++++++.+...+-  +..+-++.++++.++..++++-|++-+-.+...+++ +|+|++.+.+.+-||..+-.||..|
T Consensus       278 v~fk~~~ni~~a~~aL--n~irl~s~~~se~en~~i~rrvr~~~Gia~~keiasn~a~k~~~lldk~irl~~~a~~t~al  355 (648)
T KOG2295|consen  278 VTFKRGTNIKEACWAL--NGIRLRSNFLSESENPDITRRVRPINGIAKHKEIASNAAQKLKNLLDKLIRLIDRASQTQAL  355 (648)
T ss_pred             HhhccccchHHHHHHh--hhccccccccccccccCccceeccCCchhhHHHHHHHHHHhhhHHHhhhHHHhhcccccccc
Confidence            9999999987554444  344556677777777777777788876666666655 6999999999999999999999999


Q ss_pred             HHHHhhhhcccccccCCCCccccccccc-CCCCCCceeecccccccCcchhhHHHHHHHHHHHHhhcccccccccc----
Q 009169          157 VRKLDSEKGITENILCGSDNDKMNREKS-HGSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETS----  231 (541)
Q Consensus       157 i~kLDaE~gi~~n~L~~~d~~~~~~e~s-~~~~gp~~~~rg~~~~~~~e~~~~LD~lI~YLRrVHs~dYY~~~E~~----  231 (541)
                      +++|+++.-|..|++....+.++..++. -++.||.++++|++.++++..+++||+||+|||+||++|||+.+||+    
T Consensus       356 ~tkl~s~n~i~kni~d~l~te~S~eE~e~~gssg~e~p~eg~~~er~d~~lk~LDll~~YLr~VhslDfyn~~ey~~e~~  435 (648)
T KOG2295|consen  356 VTKLSSPNPIAKNIEDRLKTEASMEEDELLGSSGPEVPIEGLTSERDDIRLKLLDLLAEYLRIVHSLDFYNSKEYESEDA  435 (648)
T ss_pred             hhhccCCCHHHHHHHHHhhhhcchhhhhhcCCCCCcCccccCccccchhHHHHHHHHHHHHHHHHhcccccccccchhhh
Confidence            9999999999888876665555555554 45788999999999999999999999999999999999999999986    


Q ss_pred             --cccccccccCCCCCCcCCCchhHHHHHhHHHHHHHhhccChhhHhhhhchhHHHHHHhhhhHHHhhhhcccCcccccC
Q 009169          232 --EAKGLRHVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCG  309 (541)
Q Consensus       232 --er~g~~H~R~~~~~~~~~~~~~~w~kk~d~~~~~~l~~~dp~~~~~~kekid~~~~e~le~~V~k~~dE~~g~K~~C~  309 (541)
                        ++||++|+|+++..+  ..+..+|+++|++.|+.+|...++++.+-.+.+.++..+++|++||.+|++|+++|||+|+
T Consensus       436 mpnrcgl~hvR~~~~vs--~~ev~e~es~f~s~le~~l~~~~~lee~eakkkg~k~~e~eve~~v~s~t~e~~kdKy~C~  513 (648)
T KOG2295|consen  436 MPNRCGLIHVRGKGFVS--SKEVGEEESIFLSDLENNLACLLELEEEEAKKKGAKDVEDEVENFVDSNTMELDKDKYLCP  513 (648)
T ss_pred             cccccCceeecccCCCC--cccchhHHHHHHHHhhhcccccccchHHHHHHhcccCHHHHHHHHHHHHHHHhhcccccCC
Confidence              489999999995433  2357889999999999999988888888888888888999999999999999999999999


Q ss_pred             CCCccccccchhHHHHHHhhhChHHHHHHHhhHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccccccCCCCCccccccC
Q 009169          310 AKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMPKDRPLRRKLGPDNRLKDERG  389 (541)
Q Consensus       310 ~~~CtKlFKg~eFV~KHI~nKH~E~v~~~~~kv~E~~yfnNYl~DP~rP~~~p~~~~~~~~~~~~~~~~~~~~r~~~~~~  389 (541)
                      |+||+|||||||||+|||++||.|||+++++   |++||||||+||+||..+++ ++++|++..++.        |+++|
T Consensus       514 lsgc~KlF~gpEFvrKHi~~KH~d~leeirk---ea~ffnnYl~Dp~rp~~pe~-~~q~prd~qIl~--------r~~~g  581 (648)
T KOG2295|consen  514 LSGCAKLFKGPEFVRKHINKKHKDKLEEIRK---EAIFFNNYLLDPCRPMDPEV-VSQSPRDLQILN--------RGPYG  581 (648)
T ss_pred             CcchHhhccCHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhccCccccCCCcc-ccCCCCcccccc--------CCCCC
Confidence            9999999999999999999999999999995   89999999999999988888 666676555432        56777


Q ss_pred             CccccccccCCCCCCCcccCCCCCCCCCCCCCCCCCCCCchhhcccCCCCccCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 009169          390 NRRDRDYRANGSDRYDRSDNAQASDFPSNDDVPEGANRDESMFDTFGGQGIRVAPPFPSDIPPPPVLMPVPGAGPLGPFV  469 (541)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~p~lmpvpgagp~gpfv  469 (541)
                      ++|+.          -|-             .+.+++|...-+|.|||.|                      |+|.|||-
T Consensus       582 G~r~~----------~r~-------------~~dg~~p~~~g~d~fgg~G----------------------a~~sg~~p  616 (648)
T KOG2295|consen  582 GFRNY----------NRN-------------YTDGTTPYGRGRDEFGGSG----------------------ASPSGPQP  616 (648)
T ss_pred             CccCC----------CCC-------------CCCCCCCCCCCCCcccCCC----------------------CCCCCCCC
Confidence            66652          111             1223345555567889875                      23566553


Q ss_pred             CCChHHHHHHhHhcCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCccc
Q 009169          470 PAPPEVAMQMIRDQGGPPFEGGGRHGRPGPQISGPGPILLSPAFRQDPRRIRSYQDLDAPEDEVTV  535 (541)
Q Consensus       470 papp~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~p~~~~dpr~~r~y~dldap~~~~~~  535 (541)
                                       ||.++|+.            +...|.|     +|+||||||||+++|++
T Consensus       617 -----------------pf~gqg~~------------f~~~p~~-----R~vsYqDLDAPddev~~  648 (648)
T KOG2295|consen  617 -----------------PFSGQGGM------------FHRRPRY-----RLVSYQDLDAPDDEVPE  648 (648)
T ss_pred             -----------------CcccCCCC------------cCCCccc-----ccccccccCCccccCCC
Confidence                             35554422            2244443     38999999999999986

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity [] Back     alignment and domain information
>PF12066 DUF3546: Domain of unknown function (DUF3546); InterPro: IPR021933 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF13821 DUF4187: Domain of unknown function (DUF4187) Back     alignment and domain information
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A Back     alignment and domain information
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>smart00451 ZnF_U1 U1-like zinc finger Back     alignment and domain information
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length Back     alignment and domain information
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification] Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query541
3ax1_A358 Molecular Insights Into Mirna Processing By Arabido 1e-152
>pdb|3AX1|A Chain A, Molecular Insights Into Mirna Processing By Arabidopsis Serrate Length = 358 Back     alignment and structure 
Iteration: 1

 Score =  535 bits (1379), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 262/353 (74%), Positives = 294/353 (83%), Gaps = 5/353 (1%)
Query: 1   MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAV 60
           MSYKQFIQELEDDILP+EAERRYQEYKSEYI+TQKR FF+ HK+E+WLK+KYHPTNL++V
Sbjct: 3   MSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYHPTNLLSV 62
Query: 61  IERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHG 120
           IERRNDLA+KVAKDFLLDLQSGTLDLGP+V A   NK G+TSEPNS+D+    GKR+RHG
Sbjct: 63  IERRNDLAQKVAKDFLLDLQSGTLDLGPAVTA--LNKSGRTSEPNSEDEAAGVGKRKRHG 120
Query: 121 RGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMN 180
            G AKE +LLSAAPKA   +S+P+RI  D+EQ QALVRKLDSEK I EN+L GS+ +K  
Sbjct: 121 MGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKLDSEKKIEENVLQGSETEKSG 180
Query: 181 REKSH-GSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHV 239
           REK H GSTGPV+IIRGLTSVKGLEGVELLDTL+TYLWR+HG+DYYG VET+EAKGLRHV
Sbjct: 181 REKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGLRHV 240
Query: 240 RAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTXXXXXXXXXXXXXXPFVRKIRD 299
           RAEGK SD    G E E K D  WQERL+ QDPLE+M               P VRKIRD
Sbjct: 241 RAEGKVSDA--KGDENESKFDSHWQERLKGQDPLEVMAAKEKIDAAATEALDPHVRKIRD 298
Query: 300 EKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYM 352
           EKYGWKYGCGAKGCTKLFHAAEFV+KHLKLKH ELV ELT+KVREELYFQNY+
Sbjct: 299 EKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREELYFQNYL 351

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query541
3ax1_A358 Serrate RNA effector molecule; miRNA processing, p 1e-119
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding; 2.74A {Arabidopsis thaliana} Length = 358 Back     alignment and structure
 Score =  355 bits (910), Expect = e-119
 Identities = 273/359 (76%), Positives = 307/359 (85%), Gaps = 5/359 (1%)

Query: 1   MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAV 60
           MSYKQFIQELEDDILP+EAERRYQEYKSEYI+TQKR FF+ HK+E+WLK+KYHPTNL++V
Sbjct: 3   MSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYHPTNLLSV 62

Query: 61  IERRNDLARKVAKDFLLDLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHG 120
           IERRNDLA+KVAKDFLLDLQSGTLDLGP+V A   NK G+TSEPNS+D+    GKR+RHG
Sbjct: 63  IERRNDLAQKVAKDFLLDLQSGTLDLGPAVTAL--NKSGRTSEPNSEDEAAGVGKRKRHG 120

Query: 121 RGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKLDSEKGITENILCGSDNDKMN 180
            G AKE +LLSAAPKA   +S+P+RI  D+EQ QALVRKLDSEK I EN+L GS+ +K  
Sbjct: 121 MGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKLDSEKKIEENVLQGSETEKSG 180

Query: 181 REKSH-GSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHV 239
           REK H GSTGPV+IIRGLTSVKGLEGVELLDTL+TYLWR+HG+DYYG VET+EAKGLRHV
Sbjct: 181 REKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGLRHV 240

Query: 240 RAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRD 299
           RAEGK SD    G E E K D  WQERL+ QDPLE+M AK+KIDAAA +ALDP VRKIRD
Sbjct: 241 RAEGKVSD--AKGDENESKFDSHWQERLKGQDPLEVMAAKEKIDAAATEALDPHVRKIRD 298

Query: 300 EKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAP 358
           EKYGWKYGCGAKGCTKLFHAAEFV+KHLKLKH ELV ELT+KVREELYFQNY+      
Sbjct: 299 EKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTTKVREELYFQNYLEHHHHH 357
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query541
3ax1_A358 Serrate RNA effector molecule; miRNA processing, p 100.0
2lv2_A85 Insulinoma-associated protein 1; structural genomi 83.86
2adr_A60 ADR1; transcription regulation, zinc finger,; NMR 82.51
1x5w_A70 Zinc finger protein 64, isoforms 1; ZNF338, nuclea 81.83
1bbo_A57 Human enhancer-binding protein MBP-1; DNA-binding 81.63
1znf_A27 31ST zinc finger from XFIN; zinc finger DNA bindin 81.43
2d9h_A78 Zinc finger protein 692; ZF-C2H2 domain, structura 81.22
1paa_A30 Yeast transcription factor ADR1; transcription reg 81.13
1klr_A30 Zinc finger Y-chromosomal protein; transcription; 80.89
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding; 2.74A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1.9e-98  Score=775.48  Aligned_cols=351  Identities=77%  Similarity=1.199  Sum_probs=284.6

Q ss_pred             CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 009169            1 MSYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQ   80 (541)
Q Consensus         1 msfKqF~~~~~D~isp~eA~~~Y~eYK~e~~~kq~r~FF~~HK~EeWFrEKY~P~~l~~~~e~R~e~~~~~a~~F~~dLe   80 (541)
                      |||||||++|+|+|||+||+++|++||.+|.++|++.||++||+++||||||||+++.+++++|++.++++|+.|+++|+
T Consensus         3 msFKqFl~~~~D~isp~eA~~~Y~eYk~e~~~~q~~~FF~~HK~e~WfreKY~P~~l~~~~~~R~e~ak~~a~~F~~~L~   82 (358)
T 3ax1_A            3 MSYKQFIQELEDDILPSEAERRYQEYKSEYITTQKRAFFNTHKEEDWLKNKYHPTNLLSVIERRNDLAQKVAKDFLLDLQ   82 (358)
T ss_dssp             CCHHHHGGGTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcccccccCCCCCCCCCChhhHHHhHHHHHHHHHHH
Q 009169           81 SGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLSAAPKAHPISSEPRRIQVDIEQAQALVRKL  160 (541)
Q Consensus        81 sG~lD~~p~~~~~~~~~~G~~sd~n~~~e~d~~~K~~R~gw~~~ke~d~~s~aPka~pi~S~p~RI~~Dl~qa~~Li~kL  160 (541)
                      +|+||++|+++++  +++|.++++|++++.+.++|++++||++.+++|++++||++||+||+|+||.+||+||++||++|
T Consensus        83 ~G~ld~~~~~~~~--~~~~~~~~~~~~d~~~~~~k~~~~g~~~~~~~d~~~~ap~~~P~~S~p~RI~~Dle~a~~Lv~kL  160 (358)
T 3ax1_A           83 SGTLDLGPAVTAL--NKSGRTSEPNSEDEAAGVGKRKRHGMGGAKENELLSAAPKAPSFTSDPKRILTDVEQTQALVRKL  160 (358)
T ss_dssp             TTCCCCCSBSSCC--C-----------------------------------CCCBCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCccccc--cccCCCCCCChhhhhhccccccccCCCcccccchhhcccCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999888884  68888899888888887888999999999999988999999999999999999999999999999


Q ss_pred             hhhhcccccccCCCCcccccccccCC-CCCCceeecccccccCcchhhHHHHHHHHHHHHhhcccccccccccccccccc
Q 009169          161 DSEKGITENILCGSDNDKMNREKSHG-STGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETSEAKGLRHV  239 (541)
Q Consensus       161 DaE~gi~~n~L~~~d~~~~~~e~s~~-~~gp~~~~rg~~~~~~~e~~~~LD~lI~YLRrVHs~dYY~~~E~~er~g~~H~  239 (541)
                      |+|+||++|+|+.+++...++++++. ++||+++++|+.++++++.+++||++|+|||+||||||||++|++++||++|+
T Consensus       161 D~e~gie~n~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~LD~~i~YLRrVH~~dYY~~~E~~~~~g~~Hv  240 (358)
T 3ax1_A          161 DSEKKIEENVLQGSETEKSGREKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGLRHV  240 (358)
T ss_dssp             HHHHTCCCCTTC---------------CCCCCEEECCSSCCEEECSHHHHHHHHHHHHHHHCEEGGGTEECTTCCSBCCB
T ss_pred             HHhhCCcccccccccccccccccccccCCCcchhhccccchhhhhhHHHHHHHHHHHHHHHcccccceEeecCccccCee
Confidence            99999999999998877677677764 78999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcCCCchhHHHHHhHHHHHHHhhccChhhHhhhhchhHHHHHHhhhhHHHhhhhcccCcccccCCCCccccccc
Q 009169          240 RAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHA  319 (541)
Q Consensus       240 R~~~~~~~~~~~~~~w~kk~d~~~~~~l~~~dp~~~~~~kekid~~~~e~le~~V~k~~dE~~g~K~~C~~~~CtKlFKg  319 (541)
                      |+++++++  ++..+|+++|+++|+.+|+..||++.++|+++|+++++++|+++|+++++|+|||||+|++++|+|||||
T Consensus       241 R~~~~~~~--~~~~~we~~ld~~w~~~l~~~dp~~~~lg~k~ie~~~~e~l~~~v~k~~dE~~gwK~~C~~~~C~KLFk~  318 (358)
T 3ax1_A          241 RAEGKVSD--AKGDENESKFDSHWQERLKGQDPLEVMAAKEKIDAAATEALDPHVRKIRDEKYGWKYGCGAKGCTKLFHA  318 (358)
T ss_dssp             C------------CHHHHHHHHHHHHHHHSCCHHHHHHCHHHHHHHHHHHHGGGEEEEECSSSSEEEEECSSSCCCEESS
T ss_pred             cCCCCCCC--CchhhHHHHHHHHHHHHHcccChHHHHhcCccHHHHHHHHHHHHHHHHhhcccccccCCCCCCcCcccCC
Confidence            99876543  3678999999999999999999999899998999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhChHHHHHHHhhHHHHHHHhhhcCCC
Q 009169          320 AEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDP  355 (541)
Q Consensus       320 ~eFV~KHI~nKH~E~v~~~~~kv~E~~yfnNYl~DP  355 (541)
                      ++||+|||+|||+|+|++++++|+|.+||+|||.--
T Consensus       319 ~eFV~KHi~~KH~e~v~~~~~~v~~~~~~~~~~~~~  354 (358)
T 3ax1_A          319 AEFVYKHLKLKHTELVTELTTKVREELYFQNYLEHH  354 (358)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999998643
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Back     alignment and structure
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Back     alignment and structure
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Back     alignment and structure
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1 Back     alignment and structure
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 Back     alignment and structure
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query541
d2glia529 Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 95.78
d1ubdc128 Ying-yang 1 (yy1, zinc finger domain) {Human (Homo 92.8
d2glia330 Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 89.32
d1ubdc428 Ying-yang 1 (yy1, zinc finger domain) {Human (Homo 88.6
d1zfda_32 SWI5 zinc-finger domains {Baker's yeast (Saccharom 88.48
d2dlka236 Zinc finger protein 692, ZNF692 {Human (Homo sapie 87.26
d2ct1a236 Transcriptional repressor CTCF {Human (Homo sapien 87.05
d2glia132 Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960 86.94
d1sp2a_31 Transcription factor sp1 {Human (Homo sapiens) [Ta 86.71
d1ubdc330 Ying-yang 1 (yy1, zinc finger domain) {Human (Homo 86.46
d1a1ia129 ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} 85.86
d1ncsa_47 SWI5 zinc-finger domains {Baker's yeast (Saccharom 85.58
d2dlka130 Zinc finger protein 692, ZNF692 {Human (Homo sapie 83.76
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0019  Score=42.35  Aligned_cols=27  Identities=37%  Similarity=0.678  Sum_probs=25.6

Q ss_pred             cccCCCCccccccchhHHHHHHhhhCh
Q 009169          306 YGCGAKGCTKLFHAAEFVHKHLKLKHP  332 (541)
Q Consensus       306 ~~C~~~~CtKlFKg~eFV~KHI~nKH~  332 (541)
                      |-|.+.||+|-+-.|.=+|||+++.|+
T Consensus         3 Y~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           3 YVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             eecccCCCCcccCCHHHHHHHHHhhCC
Confidence            789999999999999999999999884
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure