Citrus Sinensis ID: 009183

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-
Protein Sequence
MASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQLAAG
Secondary Structure (PSIPRED)
ccccHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcHHHccccccccccHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHccccHHHHHHHHHHHccHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccEccccHHHccccccccHHHHHcccHHHccccHHHcccccEEEccccHcccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccccHHHHcc
Coil and Loop (DISEMBL)
MASSEIEVvssteaipnenqndnqaaVTDVfsasaygdfeKLRKFVeedgasvsrpdgngyFALQWAALNNFADIAQYIIDhggdvnatdnngqtALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYhadydasdnegrsplhwaAYKGFADTIRLLLFRdasqgrqdkdgctplHWAALRGNVEACTVLVHagtkqeltakdkagltptqlaydKGHRQVALYLSNAQHmhrnhwgdkicgrktsdigyapILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLIMFyrcsskdpgyikrsqdidnhtdsedplltidlnnspiwtgnwsqlcptckiirpvrskhcpackccveqfdhhcpwisncvgkrnkrDFFIFLCLGTLTSYLASGIAIhriwtaphlpadgtwIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSvrydylrgpdgrfrnpynhgcqkncadffihgytnddelawpplqlaag
Flexible Loop (DISEMBL)
MASSEIEVVSsteaipnenqndnQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGtkqeltakdkagltPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARnittnelanSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQLAAG
Low Complexity Region (SEG)
MASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPilfsiiilciilfiNSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQLAAG
Disordered region (IsUnstruct)
***************************TDVFSASAYGDFEKLRKFVE*********DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYI**************PLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWP*******
Disordered Region (DISOPRED)
*ASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKR*************LLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSV**************PYNHGCQKNCADFFIHGYTNDDELAWPPL*****
Disordered Region (DISEMBL)
***********TEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQLAAG
Disordered Region (DISPRO)
*ASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQLA**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQLAAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	541	2.2.26 [Sep-21-2011]
Q3EC11	536	Probable S-acyltransferas	yes	no	0.970	0.979	0.606	0.0
Q52T38	620	S-acyltransferase TIP1 OS	no	no	0.974	0.85	0.554	1e-172
Q8IUH5	632	Palmitoyltransferase ZDHH	yes	no	0.885	0.757	0.292	8e-51
Q80TN5	632	Palmitoyltransferase ZDHH	yes	no	0.885	0.757	0.291	2e-50
Q09701	642	Palmitoyltransferase akr1	yes	no	0.863	0.727	0.262	3e-43
Q6C520	702	Palmitoyltransferase AKR1	yes	no	0.896	0.690	0.257	2e-42
Q8IUH4	622	Palmitoyltransferase ZDHH	no	no	0.920	0.800	0.258	8e-41
Q5NVB9	622	Palmitoyltransferase ZDHH	no	no	0.916	0.797	0.256	4e-40
Q8T2Q0	698	Putative ZDHHC-type palmi	no	no	0.822	0.637	0.271	7e-40
Q4R690	622	Palmitoyltransferase ZDHH	N/A	no	0.913	0.794	0.258	8e-40

>sp|Q3EC11|ZDHC2_ARATH Probable S-acyltransferase At2g14255 OS=Arabidopsis thaliana GN=At2g14255 PE=2 SV=2

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/536 (60%), Positives = 403/536 (75%), Gaps = 11/536 (2%)

Query: 1   MASSEIEVV---SSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPD 57
           M SSEIEVV   S++   P E+       +TDVFSASAYGD  +L+ FVE +G+SVS PD
Sbjct: 1   MDSSEIEVVPLDSNSHQSPTES-----PTITDVFSASAYGDLHQLKHFVEHNGSSVSLPD 55

Query: 58  GNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGA 117
            NG++ALQWAALNN   +AQYII HGGDVN+ DN  QT LHWAAV+GSI VAD+L+Q+GA
Sbjct: 56  DNGFYALQWAALNNSLHVAQYIIQHGGDVNSADNIQQTPLHWAAVKGSIDVADLLLQHGA 115

Query: 118 RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIR 177
           R+EA DV+G+RAVHVA+QYGQT+F+NHI+  Y ADY+A D EGRSPLHWAAY GF +T+R
Sbjct: 116 RIEAVDVNGFRAVHVASQYGQTAFVNHIIVDYAADYNALDIEGRSPLHWAAYNGFTETVR 175

Query: 178 LLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYD 237
           LLLFRDA Q RQD  GCTPLHWA ++ NVEACT+LVHAGTK+EL  KD  G TP +LA D
Sbjct: 176 LLLFRDACQNRQDNTGCTPLHWAVIKENVEACTLLVHAGTKEELILKDNTGSTPLKLASD 235

Query: 238 KGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRL 297
           KGHRQ+AL+LS A    +N + DKI   K  +  YAP+LFS+I++ ++LFI S+V+A  L
Sbjct: 236 KGHRQLALFLSKAMRTRKNSFVDKIFCGKLGETSYAPMLFSLIVILMVLFITSIVSASNL 295

Query: 298 TKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNS 357
            K+TA++GLW+   +S  V +LI FYR S KDPGY+KR+ + ++   + DPL+ I+  N 
Sbjct: 296 PKITAMVGLWACFGLSCGVYALITFYRVSRKDPGYVKRTGEANSQHTANDPLIDINFKN- 354

Query: 358 PIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCL 417
           P W GNWSQLCPTCKIIRPVRSKHCP CK CVEQFDHHCPWISNCVGK+NKR F +F+ +
Sbjct: 355 PSWKGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKKNKRYFLVFVIM 414

Query: 418 GTLTSYLASGIAIHRIWTA-PHLPADGTWI-HYVLVHPGLVLFLVLDTIILIAGTTLTSI 475
           G LTS++    A+ R+W   P +    +WI H V+ HP   +FL  D +I IA  TLT  
Sbjct: 415 GALTSFVGGTTAVQRLWRGIPQVHHGESWIKHIVIEHPDAAVFLFFDLLIFIATMTLTIS 474

Query: 476 QAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDEL 531
           Q+Y IARNITTNEL N+ R+ YLRGPDGRF NPYNHG ++NC DF +HGYT DDE+
Sbjct: 475 QSYMIARNITTNELWNAKRFSYLRGPDGRFYNPYNHGLRRNCTDFLVHGYTRDDEV 530

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|Q52T38|ZDH22_ARATH S-acyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1 PE=2 SV=1

 Score =  607 bits (1564), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/537 (55%), Positives = 390/537 (72%), Gaps = 10/537 (1%)

Query: 3   SSEIEVVSSTEAIPNENQNDNQAAV------TDVFSASAYGDFEKLRKFVEEDGASVSRP 56
           SSEIEVV   ++ P EN   +   +       DV++A+AYGD EKL + VE +G+SVS P
Sbjct: 2   SSEIEVVEEIQSNPKENGESSSKGIEEESLKNDVYTAAAYGDLEKLHRLVECEGSSVSEP 61

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG 116
           D  GY+ALQW+ALNN   +AQY+I+HGGDVNATD+ GQTALHW+AVRG+I VA++L+Q G
Sbjct: 62  DALGYYALQWSALNNRVAVAQYLIEHGGDVNATDHTGQTALHWSAVRGAIQVAELLLQEG 121

Query: 117 ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
           ARV+A D++GY+A HVAAQYGQT+FL H+V+K++AD D  DN+GRSPLHWAAYKGFAD+I
Sbjct: 122 ARVDATDMYGYQATHVAAQYGQTAFLCHVVSKWNADPDVPDNDGRSPLHWAAYKGFADSI 181

Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
           RLLLF DA +GRQDK+GCTPLHWAA+RGN+EACTVLV AG K++L   DK GLTP QLA 
Sbjct: 182 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMITDKTGLTPAQLAA 241

Query: 237 DKGHRQVALYLSNAQHMHRNHW-GDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAP 295
           +K HRQV+ +L NA+ +      G    GR  S +G AP+L+ +I+L ++++ NSVV A 
Sbjct: 242 EKNHRQVSFFLGNARSLLEKRCDGSSPLGR-LSKLGLAPVLWIMILLLLLVYTNSVVLAS 300

Query: 296 RLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLN 355
            L K+T  +G  +W    LA   L +FYRCS KDPGYI+ +         ++PLL I+LN
Sbjct: 301 NLPKLTTGIGALAWLGFILATAGLFLFYRCSRKDPGYIRMNIHDPQTMKDDEPLLKIELN 360

Query: 356 NSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFL 415
           N  +  GNW+QLC TCKIIRP+R+KHC  C  CVEQFDHHCPW+SNCVGK+NK +FF+FL
Sbjct: 361 NPALLAGNWTQLCATCKIIRPLRAKHCSTCDRCVEQFDHHCPWVSNCVGKKNKWEFFLFL 420

Query: 416 CLGTLTSYLASGIAIHRIWTAPHLPAD-GTWIHYVLV-HPGLVLFLVLDTIILIAGTTLT 473
            L  L   +  G+ + R+ + P  P+  G W+ +V   H G + FL+++  +  +   LT
Sbjct: 421 LLEVLAMLITGGVTLARVLSDPSAPSSFGAWMSHVASNHVGALSFLLVEFCLFFSVAVLT 480

Query: 474 SIQAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDE 530
            IQA QI+RNITTNE+AN++RY YLRGP GRFRNPY+ GC++NC+DF + GY  D E
Sbjct: 481 VIQASQISRNITTNEMANALRYSYLRGPGGRFRNPYDLGCRRNCSDFLVKGYNEDIE 537

Palmitoyltransferase involved in cell growth regulation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q8IUH5|ZDH17_HUMAN Palmitoyltransferase ZDHHC17 OS=Homo sapiens GN=ZDHHC17 PE=1 SV=2

 Score =  201 bits (512), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 162/553 (29%), Positives = 243/553 (43%), Gaps = 74/553 (13%)

Query: 29  DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
           D+  A+ YG +E+ R+ VE  G  V +PD      L WAA+NN  D+ +Y I  G  V+ 
Sbjct: 60  DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 118

Query: 89  TDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
              +   T LHWA  +G +++   L++ GA     D  G   +H+AAQ+G TS + +++A
Sbjct: 119 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 178

Query: 148 KYHADYDASDNEGRSPLHWAAYKGFA-DTIRLLLFRDASQGRQDK-DGCTPLHWAALRGN 205
           K   D D  D  G +PL WAAY+  + D  RLLL  + S    DK    T LHWA L GN
Sbjct: 179 K-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 237

Query: 206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMH--------RNH 257
               ++L+ AG    + A++  G +   LA  + +  +  +L  A+           R  
Sbjct: 238 TTVISLLLEAGA--NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDNPSFLRKL 295

Query: 258 WGDKICGRKT-------------------------SDIGYAPILFSIIILCIILFINSVV 292
             DK   +K                            + Y  +  ++  L    F +S+ 
Sbjct: 296 KADKEFRQKVMLGTPFLVIWLVGFIADLNIDSWLIKGLMYGGVWATVQFLSKSFFDHSMH 355

Query: 293 AAPRL-----TK----VTAVLGLWS-----WTVVSLAVGSLIMFY---RCSSKDPGYIKR 335
           +A  L     TK    VT     W+     +  +     S+ +FY   +    DPG IK 
Sbjct: 356 SALPLGIYLATKFWMYVTWFFWFWNDLNFLFIHLPFLANSVALFYNFGKSWKSDPGIIKA 415

Query: 336 SQDIDNHTDSE-DPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDH 394
           +++    T  E     ++DL          S  C TC I +PVRSKHC  C  C+ +FDH
Sbjct: 416 TEEQKKKTIVELAETGSLDL----------SIFCSTCLIRKPVRSKHCGVCNRCIAKFDH 465

Query: 395 HCPWISNCVGKRNKRDF--FIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLV- 451
           HCPW+ NCVG  N R F  ++F  L  +   +   I+   +        DG W +   + 
Sbjct: 466 HCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCISYWGLHCETTYTKDGFWTYITQIA 525

Query: 452 --HPGLVLFLVLDTIILIAGTTLTSIQAYQIA-RNITTNELANSVRYDYLRGPDGRFRNP 508
              P +    +      +    L   Q YQI+   ITTNE  N+ RY + +       +P
Sbjct: 526 TCSPWMFWMFLNSVFHFMWVAVLLMCQMYQISCLGITTNERMNARRYKHFKVTTTSIESP 585

Query: 509 YNHGCQKNCADFF 521
           +NHGC +N  DFF
Sbjct: 586 FNHGCVRNIIDFF 598

Palmitoyltransferase specific for a subset of neuronal proteins, including SNAP25, DLG4/PSD95, GAD2, SYT1 and HD. May be involved in the sorting or targeting of critical proteins involved in the initiating events of endocytosis at the plasma membrane. Has transforming activity. Mediates Mg(2+) transport.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q80TN5|ZDH17_MOUSE Palmitoyltransferase ZDHHC17 OS=Mus musculus GN=Zdhhc17 PE=1 SV=2

 Score =  200 bits (509), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 161/553 (29%), Positives = 242/553 (43%), Gaps = 74/553 (13%)

Query: 29  DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
           D+  A+ YG +E+ R+ VE  G  V +PD      L WAA+NN  D+ +Y I  G  V+ 
Sbjct: 60  DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 118

Query: 89  TDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
              +   T LHWA  +G +++   L++ GA     D  G   +H+AAQ+G TS + +++A
Sbjct: 119 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 178

Query: 148 KYHADYDASDNEGRSPLHWAAYKGFA-DTIRLLLFRDASQGRQDK-DGCTPLHWAALRGN 205
           K   D D  D  G +PL WAAY+  + D  RLLL  + S    DK    T LHWA L GN
Sbjct: 179 K-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 237

Query: 206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMH--------RNH 257
               ++L+ AG   +  A++  G +   LA  + +  +  +L  A+           R  
Sbjct: 238 TTVISLLLEAGGNVD--AQNVKGESALDLAKQRKNVWMINHLQEARQAKGYDNPSFLRKL 295

Query: 258 WGDKICGRKT-------------------------SDIGYAPILFSIIILCIILFINSVV 292
             DK   +K                            + Y  +  ++  L    F +S+ 
Sbjct: 296 KADKEFRQKVMLGTPFLVIWLVGFIADLDIDSWLIKGLMYGGVWATVQFLSKSFFDHSMH 355

Query: 293 AAPRL-----TK----VTAVLGLWS-----WTVVSLAVGSLIMFY---RCSSKDPGYIKR 335
           +A  L     TK    VT     W+     +  +     S+ +FY   +    DPG IK 
Sbjct: 356 SALPLGIYLATKFWMYVTWFFWFWNDLNFLFIHLPFLANSVALFYNFGKSWKSDPGIIKA 415

Query: 336 SQDIDNHTDSE-DPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDH 394
           +++    T  E     ++DL          S  C TC I +PVRSKHC  C  C+ +FDH
Sbjct: 416 TEEQKKKTIVELAETGSLDL----------SIFCSTCLIRKPVRSKHCGVCNRCIAKFDH 465

Query: 395 HCPWISNCVGKRNKRDF--FIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLV- 451
           HCPW+ NCVG  N R F  ++F  L  +   +   ++   +        DG W +   + 
Sbjct: 466 HCPWVGNCVGAGNHRYFMGYLFFLLFMICWMIYGCVSYWGLHCETTYTKDGFWTYITQIA 525

Query: 452 --HPGLVLFLVLDTIILIAGTTLTSIQAYQIA-RNITTNELANSVRYDYLRGPDGRFRNP 508
              P +    +      +    L   Q YQI    ITTNE  N+ RY + +       +P
Sbjct: 526 TCSPWMFWMFLNSVFHFLWVAVLLMCQLYQITCLGITTNERMNARRYKHFKVTTTSIESP 585

Query: 509 YNHGCQKNCADFF 521
           +NHGC +N  DFF
Sbjct: 586 FNHGCVRNIIDFF 598

Palmitoyltransferase specific for a subset of neuronal proteins, including SNAP25, DLG4/PSD95, GAD2, SYT1 and HD. May be involved in the sorting or targeting of critical proteins involved in the initiating events of endocytosis at the plasma membrane. Has transforming activity. Mediates Mg(2+) transport.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q09701|AKR1_SCHPO Palmitoyltransferase akr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=akr1 PE=3 SV=1

 Score =  176 bits (447), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 150/571 (26%), Positives = 238/571 (41%), Gaps = 104/571 (18%)

Query: 29  DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
            +F A++ G+ + ++  +  +   V+  D  G  AL WAALN    I +++++HG DVNA
Sbjct: 3   SLFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADVNA 62

Query: 89  TDNNGQTA-LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
              + Q A +HWAA RGS+     LVQ+GA     D  G+  +H+A        + +++ 
Sbjct: 63  IGGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAVHAASPLLVVYLL- 121

Query: 148 KYHAD--YDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGN 205
             H D   D  D++  +PL WA+Y G       LL   A     D+D  TPLHW+ + GN
Sbjct: 122 --HLDISVDLRDDQQHTPLMWASYHGNEPITNCLLRWGADVLATDEDKMTPLHWSIVGGN 179

Query: 206 VEACTVLVHAG-----------------------------------------TKQELTAK 224
           ++   +++  G                                          K+     
Sbjct: 180 LKCMKLILKEGGIPCTAVTANLSGQLKTPWALASELRVSHLFKQALISNGLKVKETSEEP 239

Query: 225 DKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPI----LFSII 280
           +K  + P++  + +    +  +LS+        +   IC    S I  AP+     F  I
Sbjct: 240 EKWVVVPSKFQFSQKTFIIFCFLSSFIITGVFFFIMSICPMVISLI-IAPLWIYFTFKYI 298

Query: 281 ILCI---ILFINSVVAAPRLTKVTAVLGLWSWT--------------------VVSLAVG 317
             CI   I  ++  +  P L  + + +  W W                      V ++  
Sbjct: 299 TTCIHANIDIVHFYLETPFLAGIFSSIFFWVWCHSLLYIVPKTLPIKPLSSLLFVLISFT 358

Query: 318 SLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPV 377
            + ++ R + ++PGY+ +   +    +    LL  DL N        S  C  C  ++P 
Sbjct: 359 CIGLYVRTAFQNPGYVDKIGAVVQRREEISKLLDKDLFNQ-------SHYCLKCFQVKPP 411

Query: 378 RSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFL-CLGTLTS-------YLASGIA 429
           RS HC ACK C+ ++DHHCPW  NCVG RN R F +F+  L TL         Y    I 
Sbjct: 412 RSYHCGACKRCINRYDHHCPWTGNCVGARNHRTFLLFVFTLSTLIPIYFYVAFYYLQNIP 471

Query: 430 IHRIWTAPH-LPADGTWIH------YVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIAR 482
           I + + +   L   GT         +VLV   L LF+    ++++A T     Q  Q+A 
Sbjct: 472 IQKKYESYRCLFISGTICQWSLKDMFVLV-ASLTLFVNWCWVVVLAFT-----QICQVAH 525

Query: 483 NITTNELANSVRYDYLRGPDGRFRNPYN-HG 512
           N+TT E     RY  L  P  +  +P N HG
Sbjct: 526 NVTTAEFRLFKRYGTLVPPTKQNSSPKNGHG 556

Palmitoyltransferase specific for casein kinase 1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q6C520|AKR1_YARLI Palmitoyltransferase AKR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=AKR1 PE=3 SV=1

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 146/567 (25%), Positives = 246/567 (43%), Gaps = 82/567 (14%)

Query: 2   ASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGY 61
           AS ++E  ++ E   ++ + +    V     A+  G+  ++++  E    SV     +G 
Sbjct: 30  ASGKVESTTNAEEATSDVEEEENPLVV----AARDGNTAEVKRLCESGSYSVLDTAEDGV 85

Query: 62  FALQWAALNNFADIAQYIIDHGGDVNATDN--NGQTALHWAAVRGSIAVADVLVQNGARV 119
            AL WAA+NN     QY+++ G  V+A     NG T LHWA  RG + +   L+QNGA  
Sbjct: 86  TALHWAAVNNRISTCQYLVEQGAVVDAKGGQLNG-TPLHWACRRGLVYIVHYLIQNGADP 144

Query: 120 EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179
             +DV GY A+H+A        L +++ +     D  D  GR+ LHWAAY+G A ++ +L
Sbjct: 145 LRSDVQGYNALHLATHSSNVMLLVYLLHQ-GLPVDCQDPNGRTALHWAAYQGDALSVDVL 203

Query: 180 LFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKG 239
           L   +     D  G  PLHW  + G+  +   L+  G+  ++ AK   G TP  +A +  
Sbjct: 204 LRWGSDVKITDTQGFLPLHWGIVNGSRNSLARLIEEGS--DMYAKSSDGKTPHVMAAEMN 261

Query: 240 HR-QVALYLSNAQHMHRNHWGDKICGRKTSDI--GYAPILFSI--IILC--------IIL 286
              Q+   L +           K    +T+++   + P +  +  ++LC        IIL
Sbjct: 262 TTAQLEGALDDCGRFPDGSQKTKYFDARTTNLLCFFTPFILILLGLVLCTFCGPIFGIIL 321

Query: 287 FINSVVAAPRLTKVTAVLGLWS--------------------WTVV-------------- 312
            + ++  + +L K   +  L++                    W  V              
Sbjct: 322 TVATLFGSIKLLKTLVLPSLYNGHAALLKSPFQAGIFTGSAFWVTVKYLTSVLPATFASH 381

Query: 313 --------SLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNW 364
                   S+   ++  F+RC S DPGYI +   I    +  + L+     ++       
Sbjct: 382 PILNFFFASIFGLAMYCFFRCMSMDPGYIPKLSGITEQKEVIETLIERGEFDT------- 434

Query: 365 SQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYL 424
              C    + +P+RSK C   K  V +FDH CPW+ N +G RN R F +++       +L
Sbjct: 435 RHFCFVTYVRKPLRSKFCRQSKRVVARFDHFCPWVWNAIGVRNHRMFVLYVL------FL 488

Query: 425 ASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNI 484
             GI    +W A +    G  +      P     ++  ++ LI  T L+ +Q +QI R++
Sbjct: 489 QIGIP---LWLALNSAYFGELLEIKRWDPLEFYLVIWISLQLIWITFLSFVQIFQICRSL 545

Query: 485 TTNELANSVRYDYLRGPDGRFRNPYNH 511
           TT+E  N  +Y Y+ G D     P +H
Sbjct: 546 TTSEAVNLQKYGYM-GADDYSSVPLDH 571

Palmitoyltransferase specific for casein kinase 1.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q8IUH4|ZDH13_HUMAN Palmitoyltransferase ZDHHC13 OS=Homo sapiens GN=ZDHHC13 PE=2 SV=3

 Score =  168 bits (426), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 148/572 (25%), Positives = 249/572 (43%), Gaps = 74/572 (12%)

Query: 7   EVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQW 66
           E+ ++ EA+P    + N     D+  A+ YG FE+ ++ VE  G  V +PD      L W
Sbjct: 34  ELANAREALPLIEDSSN----CDIVKATQYGIFERCKELVEA-GYDVRQPDKENVSLLHW 88

Query: 67  AALNNFADIAQYIIDHGGDVNATDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
           AA+NN  D+ ++ I  G  V+    +   T LHWA  +G + +  +L+Q+GA     D  
Sbjct: 89  AAINNRLDLVKFYISKGAVVDQLGGDLNSTPLHWAIRQGHLPMVILLLQHGADPTLIDGE 148

Query: 126 GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK--GFADTIRLLLFRD 183
           G+ ++H+A  +     + ++++K  +  + +D  G++PL  +A+K  G   T  LL F  
Sbjct: 149 GFSSIHLAVLFQHMPIIAYLISKGQS-VNMTDVNGQTPLMLSAHKVIGPEPTGFLLKFNP 207

Query: 184 ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           +          TPLHWA   GNV A   L+ AG+   L  ++  G TP  +A    ++ +
Sbjct: 208 SLNVVDKIHQNTPLHWAVAAGNVNAVDKLLEAGS--SLDIQNVKGETPLDMALQNKNQLI 265

Query: 244 ALYLSNAQHMHRNH------WGDK--------ICGRKTSDIGYA------PILFSIIILC 283
              L     M  N       W  K        +       IGY         L    +L 
Sbjct: 266 IHMLKTEAKMRANQKFRLWRWLQKCELFLLLMLSVITMWAIGYILDFNSDSWLLKGCLLV 325

Query: 284 IILFINS-----------VVAAPRLTKVTAVLGLW-SWTVVSLA---------------V 316
            + F+ S           +V  P    +++V  ++ +W ++                  V
Sbjct: 326 TLFFLTSLFPRFLVGYKNLVYLPTAFLLSSVFWIFMTWFILFFPDLAGAPFYFSFIFSIV 385

Query: 317 GSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRP 376
             L  FY+  + DPG+ K S++     + +  ++T+    S     ++   C +C I +P
Sbjct: 386 AFLYFFYKTWATDPGFTKASEE-----EKKVNIITLAETGSL----DFRTFCTSCLIRKP 436

Query: 377 VRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFL-CLGTLTSYLASGIAIH-RIW 434
           +RS HC  C CCV ++D HC W   C+G  N   +  FL  L  +  ++  G  I+    
Sbjct: 437 LRSLHCHVCNCCVARYDQHCLWTGRCIGFGNHHYYIFFLFFLSMVCGWIIYGSFIYLSSH 496

Query: 435 TAPHLPADGTWIHY---VLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIA-RNITTNE-L 489
            A     DG W +    V   P ++  L+L T      T L   Q +QIA   +T++E +
Sbjct: 497 CATTFKEDGLWTYLNQIVACSPWVLYILMLATFHFSWSTFLLLNQLFQIAFLGLTSHERI 556

Query: 490 ANSVRYDYLRGPDGRFRNPYNHGCQKNCADFF 521
           +   +  +++      + PYN G  +N ADFF
Sbjct: 557 SLQKQSKHMKQTLSLRKTPYNLGFMQNLADFF 588

Palmitoyltransferase for HD and GAD2 (By similarity). Mediates Mg(2+) transport.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q5NVB9|ZDH13_PONAB Palmitoyltransferase ZDHHC13 OS=Pongo abelii GN=ZDHHC13 PE=2 SV=1

 Score =  166 bits (420), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 147/574 (25%), Positives = 250/574 (43%), Gaps = 78/574 (13%)

Query: 7   EVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQW 66
           E+ ++ EA+P    + N     D+  A+ YG FE+ ++ VE  G  V +PD      L W
Sbjct: 34  ELANAREALPLIEDSSN----CDIVKATQYGIFERCKELVEA-GYDVRQPDKENVSLLHW 88

Query: 67  AALNNFADIAQYIIDHGGDVNATDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
           AA+NN  D+ ++ I  G  V+    +   T LHWA  +G + +  +L+Q+GA     D  
Sbjct: 89  AAINNRLDLVKFYISKGAVVDQLGGDLNSTPLHWAIRQGHLPMVILLLQHGADPTLIDGE 148

Query: 126 GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK--GFADTIRLLLFRD 183
           G+ ++H+A  +     + ++++K  +  + +D  G++PL  +A+K  G   T  LL F  
Sbjct: 149 GFSSIHLAVLFQHMPIIAYLISKGQS-VNMTDVNGQTPLMLSAHKVIGPEPTGFLLKFNP 207

Query: 184 ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           +          TPLHWA   GNV A   L+ AG+   L  ++  G TP  +A    ++ +
Sbjct: 208 SLNVVDKIHQNTPLHWAVAAGNVNAVDKLLEAGS--SLDIQNVKGETPLDMALQNKNQLI 265

Query: 244 ALYLSNAQHMHRNH------WGDK--------ICGRKTSDIGYA------PILFSIIILC 283
              L     M  N       W  K        +       +GY         L    +L 
Sbjct: 266 IHMLKTEAKMRANQKFRLWRWLQKCELFLLLMLSVITMWAVGYILDFNSDSWLLKGCLLV 325

Query: 284 IILFINS-----------VVAAPRLTKVTAVLGLW-SWTVVSLA---------------V 316
            + F+ S           +V  P    +++V  ++ +W ++                  V
Sbjct: 326 TLFFLTSLFPRFLVGYKNLVYLPTAFLLSSVFWIFMTWFILFFPDLAGAPFYFSFIFSIV 385

Query: 317 GSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRP 376
             L  FY+  + DPG+ K S++     + +  ++T+    S     ++   C +C I +P
Sbjct: 386 AFLYFFYKTWATDPGFTKASEE-----EKKVNIITLAETGSL----DFRTFCTSCLIRKP 436

Query: 377 VRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFL-CLGTLTSYLASGIAIHRIWT 435
           +RS HC  C  CV ++D HC W   C+G  N   +  FL  L  +  ++  G  I+  W+
Sbjct: 437 LRSLHCHVCNSCVARYDQHCLWTGRCIGFGNHHYYIFFLFFLSMVCGWIIYGSFIY--WS 494

Query: 436 ---APHLPADGTWIHY---VLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIA-RNITTNE 488
              A     DG W +    V   P ++  L+L T      T L   Q +QIA   +T++E
Sbjct: 495 SHCATTFKEDGLWTYLNQIVACSPWVLYILMLATFHFSWSTFLLLNQLFQIAFLGLTSHE 554

Query: 489 -LANSVRYDYLRGPDGRFRNPYNHGCQKNCADFF 521
            ++   +  +++      + PYN G  +N ADFF
Sbjct: 555 RISLQKQSKHMKQTLSLRKTPYNLGFMQNLADFF 588

Palmitoyltransferase for HD and GAD2 (By similarity). Mediates Mg(2+) transport.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q8T2Q0|ZDHC6_DICDI Putative ZDHHC-type palmitoyltransferase 6 OS=Dictyostelium discoideum GN=DDB_G0275149 PE=2 SV=1

 Score =  165 bits (418), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 139/512 (27%), Positives = 220/512 (42%), Gaps = 67/512 (13%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN-ATDNNGQTALHWAAVRGSIAV 108
           G  ++  D  G  AL WA    + DI +Y++  G D N A  +  QT   WA + G + +
Sbjct: 49  GEIINSGDDCGNTALHWACYKKWYDIVKYLLSMGADPNIANTDELQTPFQWACIGGDLHI 108

Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
              ++ NG      D  GY ++  A QY + S + +++ K   + D+ D   ++ LHWAA
Sbjct: 109 VKYVLNNGGDPHLQDKRGYNSLIHATQYNEISVVRYLLDKGGVNVDSPDFLQKTSLHWAA 168

Query: 169 YKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAG 228
           Y+G    +  L+ + A     D  G +PLHWAA +GN +    L   G+K     KD   
Sbjct: 169 YQGHTQLLLFLVNKGADINALDSLGRSPLHWAAFKGNSDPIKALCDFGSKT--MEKDSNN 226

Query: 229 LTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKI---------------CGRKTSDIGYA 273
            +P+ +   + H  +A ++    +      G  +                G         
Sbjct: 227 QSPSDICSSQNHNYLAHFIKTFNYHPFRKVGPLLYNIFWIIFAILLQLYFGFIFYHFTLI 286

Query: 274 P--ILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTV--------VSLAVGSLIM-- 321
           P  ILF   + C  LFI  +  +     +     + S+TV        V  A  ++I+  
Sbjct: 287 PALILFGASLTCCKLFIEPITLSNSPNPLLPTWMITSFTVSFVYYVRYVVPAFPNIILTH 346

Query: 322 ---------FYRCSSK----DPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLC 368
                    +Y C+ K    DPG +  S      T S+D   + D  N+        ++C
Sbjct: 347 TITLFVYSSYYYCAFKLFFSDPGTVSSS------TTSQD---SKDFINAVEKELEIPEVC 397

Query: 369 PTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLAS-- 426
            TC I +P+R+KHC  CK CV +FDHHC WI+NCVG  N   F I LCL +L +Y+ S  
Sbjct: 398 STCLINKPIRAKHCRTCKRCVARFDHHCAWINNCVGVNNNLLFIILLCLFSL-AYIISVT 456

Query: 427 -GIAIHRIWTAPHLPADGT---WIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIAR 482
               +  I     L ++G    W ++   + GL+LF +  + I+     L  +Q   +  
Sbjct: 457 FNFKLMSIDENSPLYSEGKMEWWTYHYSTYKGLILFTIYKSFIMAWLARLLYVQITGVIN 516

Query: 483 NITTNELANSVRYDYLRGPDGRFRNPYNHGCQ 514
           N+T  EL        ++ P G  +   NH  Q
Sbjct: 517 NVTMFEL--------MKPPKGSKKKCCNHAPQ 540

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q4R690|ZDH13_MACFA Palmitoyltransferase ZDHHC13 OS=Macaca fascicularis GN=ZDHHC13 PE=2 SV=1

 Score =  165 bits (418), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 149/576 (25%), Positives = 246/576 (42%), Gaps = 82/576 (14%)

Query: 7   EVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQW 66
           E+ ++ EA+P    + N     D+  A+ YG FE+ ++ VE  G  V +PD      L W
Sbjct: 34  ELANAREALPLIEDSSN----CDIVKATQYGIFERCKELVEA-GYDVRQPDKENVSLLHW 88

Query: 67  AALNNFADIAQYIIDHGGDVNATDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
           AA+NN  D+ ++ I  G  V+    +   T LHWA  +G + +  +L+Q+GA     D  
Sbjct: 89  AAINNRLDLVKFYISKGAVVDQLGGDLNSTPLHWAIRQGHLPMVILLLQHGADPTLTDGE 148

Query: 126 GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK--GFADTIRLLLFRD 183
           G+ ++H+A  +     + ++++K  +  + +D  G++PL  +A+K  G   T  LL F  
Sbjct: 149 GFSSIHLAVLFQHMPIIAYLISKRQS-VNMTDVNGQTPLMLSAHKVIGPEPTGFLLKFNP 207

Query: 184 ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           +          TPLHWA   GNV A   L+ AG+   L  ++  G TP  +A    ++ +
Sbjct: 208 SLNVVDKIHQNTPLHWAVAAGNVNAVDKLLEAGS--SLDIQNVKGETPLDMALQNKNQLI 265

Query: 244 ALYLSNAQHMHRNH------WGDK--------ICGRKTSDIGYA------PILFSIIILC 283
              L     M  N       W  K        +       +GY         L    +L 
Sbjct: 266 IHMLKTEAKMRTNQKFRLWRWLQKCELFLLLMLSVITMWAVGYILDFNSDSWLLKGCLLV 325

Query: 284 IILFINSVV--------------AAPRLTKVTAVLGLW-------------SWTVVSLAV 316
            + F+ S+                A  L+ +  +   W              ++ +   V
Sbjct: 326 TLFFLTSLFPRFLVGYKNLIYLPTAFLLSSIFWIFMTWFILFFPDLAGAPFYFSFIFSIV 385

Query: 317 GSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTG--NWSQLCPTCKII 374
             L  FY+  + DPG+ K S++       E  +  I L      TG  ++   C +C I 
Sbjct: 386 AFLYFFYKTWATDPGFTKASEE-------EKKVNIITLAE----TGCLDFRTFCTSCLIR 434

Query: 375 RPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFL-CLGTLTSYLASGIAIHRI 433
           +P+RS HC  C  CV ++D HC W   C+G  N   +  FL  L  +  ++  G  I+  
Sbjct: 435 KPLRSLHCHVCNSCVARYDQHCLWTGRCIGFGNHHYYIFFLFFLSMVCGWIIYGSFIY-- 492

Query: 434 WT---APHLPADGTWIHY---VLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIA-RNITT 486
           W+   A     DG W +    V   P ++  L+L T      T L   Q +QIA   +T+
Sbjct: 493 WSNHCATTFKEDGLWTYLNQIVACSPWVLYILMLATFHFSWSTFLLLNQLFQIAFLGLTS 552

Query: 487 NELANSVRYD-YLRGPDGRFRNPYNHGCQKNCADFF 521
           +E  + ++   +++      + PYN G  +N ADFF
Sbjct: 553 HERISLLKQSKHMKQTLSLRKTPYNLGFMQNLADFF 588

Palmitoyltransferase for HD and GAD2 (By similarity). Mediates Mg(2+) transport.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	541
255554529	545	Palmitoyltransferase TIP1, putative [Ric	0.998	0.990	0.757	0.0
239909315	543	palmitoyl transferase [Jatropha curcas]	0.998	0.994	0.760	0.0
356521255	540	PREDICTED: probable S-acyltransferase At	0.961	0.962	0.756	0.0
356524772	541	PREDICTED: probable S-acyltransferase At	0.961	0.961	0.752	0.0
225429062	537	PREDICTED: probable S-acyltransferase At	0.981	0.988	0.721	0.0
449438256	539	PREDICTED: probable S-acyltransferase At	0.987	0.990	0.723	0.0
449478819	539	PREDICTED: LOW QUALITY PROTEIN: probable	0.987	0.990	0.719	0.0
357476095	543	Palmitoyltransferase [Medicago truncatul	0.992	0.988	0.708	0.0
357151994	538	PREDICTED: probable S-acyltransferase At	0.964	0.970	0.617	0.0
125534723	551	hypothetical protein OsI_36450 [Oryza sa	0.951	0.934	0.640	0.0

>gi|255554529|ref|XP_002518303.1| Palmitoyltransferase TIP1, putative [Ricinus communis] gi|223542523|gb|EEF44063.1| Palmitoyltransferase TIP1, putative [Ricinus communis]

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/544 (75%), Positives = 459/544 (84%), Gaps = 4/544 (0%)

Query: 1   MASSEIEVV-SSTEA-IPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDG 58
           MASSEIEVV SS E+  P+  Q      V DVFSASAYGDFEKLRKFVE+DGAS+SRPD 
Sbjct: 1   MASSEIEVVVSSPESRTPSHQQQQELPPVLDVFSASAYGDFEKLRKFVEQDGASLSRPDV 60

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
           NGY+ALQWAALNNFADIAQYII+HGGDVNA DN  QTALHWAAVRGS A ADVL+QNGAR
Sbjct: 61  NGYYALQWAALNNFADIAQYIIEHGGDVNAADNMLQTALHWAAVRGSTAAADVLLQNGAR 120

Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRL 178
           VEAAD++GYRAVHVAAQYGQT+FLNHI+AKYHAD+D  DNEGRSPLHWAAYKG+ DTIRL
Sbjct: 121 VEAADINGYRAVHVAAQYGQTAFLNHIIAKYHADFDVPDNEGRSPLHWAAYKGYPDTIRL 180

Query: 179 LLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK 238
           LLFRDASQGRQDK+GCTPLHWAAL+GNVEACTVLVHAGTKQELT KDKAG  P QLA DK
Sbjct: 181 LLFRDASQGRQDKEGCTPLHWAALKGNVEACTVLVHAGTKQELTVKDKAGFNPFQLASDK 240

Query: 239 GHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLT 298
           GHRQVA +LS AQ   R HW DKIC  K   IGYAPIL SIII+ ++LF NS++AA  L 
Sbjct: 241 GHRQVAFFLSTAQRAQRKHWSDKICNGKMGHIGYAPILLSIIIILMVLFFNSIMAAANLP 300

Query: 299 KVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSP 358
           KVTAV+GLW W  +SL+V +LIMFYRCSS+DPG+IKR +D+    D+EDPLL +DLNNS 
Sbjct: 301 KVTAVVGLWGWAALSLSVLALIMFYRCSSRDPGFIKRLEDLGKDADTEDPLLNVDLNNSS 360

Query: 359 IWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLG 418
           +W GNWSQLCPTCKIIRPVRSKHCPACK CVEQFDHHCPWISNCVGKRN+RDFFIFLC G
Sbjct: 361 VWMGNWSQLCPTCKIIRPVRSKHCPACKRCVEQFDHHCPWISNCVGKRNRRDFFIFLCSG 420

Query: 419 TLTSYLASGIAIHRIWTAPH-LPADGTWIHYVLV-HPGLVLFLVLDTIILIAGTTLTSIQ 476
           TLTS+L++ + I RIWTA H L  +  W+HY++V HPG V FL  D II +A TTLT  Q
Sbjct: 421 TLTSFLSAAVTIQRIWTAVHTLHIEQRWVHYLVVQHPGAVAFLFFDVIIFMAATTLTIAQ 480

Query: 477 AYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPL 536
           A QIARNITTNELAN+ RY YLRGPDGRFRNPYNHGC+KNC+DF I GYT+DDE+AWPPL
Sbjct: 481 ASQIARNITTNELANAARYGYLRGPDGRFRNPYNHGCRKNCSDFIIQGYTDDDEIAWPPL 540

Query: 537 QLAA 540
           Q  A
Sbjct: 541 QQVA 544

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239909315|gb|ACS32303.1| palmitoyl transferase [Jatropha curcas]

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/542 (76%), Positives = 460/542 (84%), Gaps = 2/542 (0%)

Query: 1   MASSEIEVVSS-TEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGN 59
           MASSEIEVVSS T+  P ++ ++    VTDVFSASAYGDFEKLRKFVE+DGAS+S  DGN
Sbjct: 1   MASSEIEVVSSQTKTQPQQSPSNGAPPVTDVFSASAYGDFEKLRKFVEQDGASLSIADGN 60

Query: 60  GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV 119
           GY+ALQWAALNNF DIAQYII+HGGDVNATDN  QTALHWAAVRGSI+VADVLVQNGARV
Sbjct: 61  GYYALQWAALNNFPDIAQYIIEHGGDVNATDNMQQTALHWAAVRGSISVADVLVQNGARV 120

Query: 120 EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179
           EAAD++GYRAVHVAAQYGQT+FLN IVAKYHAD+DA DN+GRSPLHWAAYKG+ADT+RLL
Sbjct: 121 EAADLNGYRAVHVAAQYGQTAFLNLIVAKYHADFDAPDNDGRSPLHWAAYKGYADTVRLL 180

Query: 180 LFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKG 239
           LFRDA QGRQDK+GCTPLHWAALRGNVEA +VLV AGTK ELT KDKAGLTP ++A DKG
Sbjct: 181 LFRDARQGRQDKEGCTPLHWAALRGNVEASSVLVQAGTKLELTVKDKAGLTPVEVASDKG 240

Query: 240 HRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTK 299
           HR VAL+LSNAQ      W DKI   K  D GYAPILFSI+I  + LFINSV++AP L K
Sbjct: 241 HRHVALFLSNAQQKRNKRWFDKIGLGKIGDTGYAPILFSIVIALMFLFINSVLSAPNLPK 300

Query: 300 VTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPI 359
           VTAV+GLW +T +SLAV SLIMFYRCSS+DPG+IKR +D+    D EDPLL IDLN S I
Sbjct: 301 VTAVVGLWGFTALSLAVVSLIMFYRCSSRDPGFIKRLEDLGKDADIEDPLLNIDLNYSSI 360

Query: 360 WTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGT 419
           W GNWSQLCPTCKIIRPVRSKHC  CK CVEQFDHHCPWISNCVGKR+KRDFFIFLCLGT
Sbjct: 361 WMGNWSQLCPTCKIIRPVRSKHCSTCKRCVEQFDHHCPWISNCVGKRSKRDFFIFLCLGT 420

Query: 420 LTSYLASGIAIHRIWTAPHLPADGTWIHYVLV-HPGLVLFLVLDTIILIAGTTLTSIQAY 478
           LTS+L++ IA+ RI TA        W+HYV+V H G+V FLVLD II +A TTLT+ QA 
Sbjct: 421 LTSFLSAAIAVQRIRTAMQELHTERWMHYVVVQHLGVVAFLVLDMIIFVAATTLTTAQAS 480

Query: 479 QIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQL 538
           QIARNITTNELAN++RY YLRGPDGRFRNPYNHGC+KNCADF I GYT+DDE+AWPPLQ 
Sbjct: 481 QIARNITTNELANAIRYGYLRGPDGRFRNPYNHGCRKNCADFIIQGYTDDDEIAWPPLQQ 540

Query: 539 AA 540
            A
Sbjct: 541 VA 542

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521255|ref|XP_003529272.1| PREDICTED: probable S-acyltransferase At2g14255-like [Glycine max]

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/522 (75%), Positives = 437/522 (83%), Gaps = 2/522 (0%)

Query: 21  NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYII 80
           N++Q  + D+F+ASA+GDF KLR FVE+DGASVS PD NGY+ALQWA+LNNF DIA Y+I
Sbjct: 18  NNDQPPILDIFTASAHGDFNKLRTFVEQDGASVSLPDSNGYYALQWASLNNFHDIAHYLI 77

Query: 81  DHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS 140
            HG DVNA DN  QTALHWAAVRGS   ADVLV+NGARVEAADV+GYRAVHVAAQYGQ +
Sbjct: 78  QHGADVNAKDNMQQTALHWAAVRGSTLAADVLVENGARVEAADVNGYRAVHVAAQYGQAA 137

Query: 141 FLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA 200
           FLNHIV KYHAD+D  DN+G SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA
Sbjct: 138 FLNHIVVKYHADFDVPDNDGWSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA 197

Query: 201 ALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGD 260
           ALRGN EACTVLVHAGTK+EL  KD +G TP QLAYDKGHR VA +LSN Q   RN+W  
Sbjct: 198 ALRGNAEACTVLVHAGTKEELMVKDNSGNTPVQLAYDKGHRHVAPFLSNQQRASRNYWKG 257

Query: 261 KICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLI 320
           K+C    +DIGYAPILF  II   ILFINSVVAAP L K+TAV+GLW+WT +S AVGSLI
Sbjct: 258 KLCSGIVTDIGYAPILFCTIIFLSILFINSVVAAPNLKKITAVVGLWAWTALSSAVGSLI 317

Query: 321 MFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSK 380
           MFY+CSSKDPGYIKR  D+   +D+EDPLL IDLN+S +W GNWSQLCPTCKIIRPVRSK
Sbjct: 318 MFYKCSSKDPGYIKRPGDLGTQSDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSK 377

Query: 381 HCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTA-PHL 439
           HCP CK CVEQFDHHCPWISNCVGKRNKRDFFIF+CLGTLTS L+  +A+ RIWT+ P L
Sbjct: 378 HCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSSLSGAVAVQRIWTSTPAL 437

Query: 440 PADGTWIHYVLV-HPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSVRYDYL 498
            A  TWIHY LV HPGLV+FLV+D ++  A TTLT  QA  IARN+TTNELANS RYDYL
Sbjct: 438 LAGETWIHYALVKHPGLVVFLVMDAVVFFAATTLTLTQASMIARNVTTNELANSSRYDYL 497

Query: 499 RGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQLAA 540
           RGPDGRFRNPYNHGC KNCADF   GYTNDDE+AWPPLQ  A
Sbjct: 498 RGPDGRFRNPYNHGCWKNCADFLFLGYTNDDEIAWPPLQQVA 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524772|ref|XP_003531002.1| PREDICTED: probable S-acyltransferase At2g14255-like [Glycine max]

 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/522 (75%), Positives = 438/522 (83%), Gaps = 2/522 (0%)

Query: 21  NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYII 80
           N++Q  + DVF+ASA+GDF KLR FVE+DGASVS PD +GY+ALQWA+LNNF DIA Y+I
Sbjct: 19  NNDQPPILDVFTASAHGDFNKLRTFVEQDGASVSLPDFSGYYALQWASLNNFHDIAHYLI 78

Query: 81  DHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS 140
            HG DVNA DN  QTALHWAAV GS   ADVLV+NGARVEAADV+GYRAVHVAAQ+GQT+
Sbjct: 79  QHGADVNAKDNMQQTALHWAAVHGSTLAADVLVENGARVEAADVNGYRAVHVAAQFGQTA 138

Query: 141 FLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA 200
           FLNHIV KYHAD+D  DN+GRSPLHWAAYKGFADT+RLLLFRDASQGRQDKDGCTPLHWA
Sbjct: 139 FLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFADTVRLLLFRDASQGRQDKDGCTPLHWA 198

Query: 201 ALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGD 260
           ALRGN EAC VLVHAGTK+EL  KD AG TP QLAYDKGHR VA +LSN Q  H N+W  
Sbjct: 199 ALRGNAEACAVLVHAGTKEELMMKDNAGNTPVQLAYDKGHRHVAPFLSNQQRAHSNYWKG 258

Query: 261 KICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLI 320
           K+C    +DIGYAPILF  II   ILFINSVVAAP L K+TAV+GLW+WT +S AVGSLI
Sbjct: 259 KLCSGIVTDIGYAPILFCTIIFLSILFINSVVAAPNLKKITAVVGLWAWTALSSAVGSLI 318

Query: 321 MFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSK 380
           MFY+CSSKDPGYIKR  ++   +D+EDPLL IDLN+S +W GNWSQLCPTCKIIRPVRSK
Sbjct: 319 MFYKCSSKDPGYIKRLGELGTQSDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSK 378

Query: 381 HCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTA-PHL 439
           HCP CK CVEQFDHHCPWISNCVGKRNKRDFFIF+CLGTLTS L+  +A+ RI T+ P L
Sbjct: 379 HCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSSLSGAVAVQRICTSKPAL 438

Query: 440 PADGTWIHYVLV-HPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSVRYDYL 498
            A  TWIHYVLV H GLV+FLV+D ++ +A TTLT  QA  IARN+TTNELANS RYDYL
Sbjct: 439 LAGETWIHYVLVRHLGLVVFLVMDAVVFVATTTLTITQASMIARNVTTNELANSSRYDYL 498

Query: 499 RGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQLAA 540
           RGPDGRFRNPYNHGC KNCADFF  GYTNDDE+AWPPLQ  A
Sbjct: 499 RGPDGRFRNPYNHGCWKNCADFFFLGYTNDDEIAWPPLQQVA 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429062|ref|XP_002270505.1| PREDICTED: probable S-acyltransferase At2g14255 [Vitis vinifera] gi|297736344|emb|CBI25067.3| unnamed protein product [Vitis vinifera]

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/539 (72%), Positives = 451/539 (83%), Gaps = 8/539 (1%)

Query: 1   MASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNG 60
           MAS EIEV S ++   NE      A + DVFSA AYGDF KLRKFVEE+ AS+S+PDGNG
Sbjct: 1   MASPEIEVDSDSKTPKNE------AHIFDVFSACAYGDFPKLRKFVEENCASLSKPDGNG 54

Query: 61  YFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVE 120
           Y+AL WA+LNNF DI QY+I+HGGDVNA DN+ QTALHW+AVRG+++VAD+L+QNGARVE
Sbjct: 55  YYALHWASLNNFPDIVQYVIEHGGDVNAVDNSQQTALHWSAVRGAVSVADILLQNGARVE 114

Query: 121 AADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL 180
           AAD++GYRAVHVAAQYGQT+F+NH+VAKYHAD+DA D +GRSPLHWAAYKGFADTIRLLL
Sbjct: 115 AADINGYRAVHVAAQYGQTAFINHLVAKYHADFDAPDRDGRSPLHWAAYKGFADTIRLLL 174

Query: 181 FRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGH 240
           FRDA QGR DK+GCTPLHWAALRGNVEAC VLVHAGTKQEL  KD AG TP +LA DKGH
Sbjct: 175 FRDACQGRTDKEGCTPLHWAALRGNVEACAVLVHAGTKQELMVKDNAGFTPVELASDKGH 234

Query: 241 RQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKV 300
           R VA +LSN Q  H   W DK+C  KT +   AP+LF I I+ IILFIN+V+ AP LTKV
Sbjct: 235 RHVASFLSNIQRAHSKRWRDKVCSGKTGNSSCAPVLFCIAIIVIILFINTVLVAPNLTKV 294

Query: 301 TAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIW 360
           TAV+GLW W  VSLAV SLIM YRCSSKDPGYIK+S  + NHTD+EDPLL I+LNNS IW
Sbjct: 295 TAVVGLWGWICVSLAVCSLIMLYRCSSKDPGYIKKSGGLGNHTDAEDPLLNINLNNSSIW 354

Query: 361 TGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTL 420
           TGNWSQLCPTCKIIRPVRSKHCP CK CVEQFDHHCPWISNCVGK+NK DFF+F+CLG L
Sbjct: 355 TGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKKNKWDFFVFICLGAL 414

Query: 421 TSYLASGIAIHRIWTA-PHLPADGTWIHYVLV-HPGLVLFLVLDTIILIAGTTLTSIQAY 478
           ++++ + +A+ RIWTA P L A+ TWI YV+V H G+V FLV+D I+L+A  TLT+ Q+ 
Sbjct: 415 STFIGAIVAVQRIWTALPTLRAEETWIQYVVVQHSGVVAFLVMDIILLMASVTLTTAQSS 474

Query: 479 QIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQ 537
           QIARNITTNELAN +RY YL  PDGRFRNPYNHGC+KNCADF I+GYT+D+E+AWPPLQ
Sbjct: 475 QIARNITTNELANFIRYGYLHAPDGRFRNPYNHGCRKNCADFLIYGYTDDEEIAWPPLQ 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438256|ref|XP_004136905.1| PREDICTED: probable S-acyltransferase At2g14255-like [Cucumis sativus]

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/542 (72%), Positives = 451/542 (83%), Gaps = 8/542 (1%)

Query: 1   MASSEIEVVSSTEAIPN-ENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGN 59
           MASSEIEVV+S    PN  +Q + + A+ DV+SASAYGDF+K+R FVE+ GAS+  PD N
Sbjct: 1   MASSEIEVVAS----PNPRSQTNTEVAIVDVYSASAYGDFQKVRSFVEDHGASLLVPDSN 56

Query: 60  GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV 119
           GY+ALQWAALNNF DI QYII+HG DVN+ D   QTALHWAAVRGSI  ADVL+ NGARV
Sbjct: 57  GYYALQWAALNNFPDIVQYIIEHGADVNSCDKLQQTALHWAAVRGSIMAADVLLLNGARV 116

Query: 120 EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179
           EAAD++GYRAVHVAAQYGQT+FLNHIVAK+HAD+D  DNEGRSPLHWAAYKGFADTIRLL
Sbjct: 117 EAADINGYRAVHVAAQYGQTAFLNHIVAKFHADFDVPDNEGRSPLHWAAYKGFADTIRLL 176

Query: 180 LFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKG 239
           LFRDASQ RQDK+GCTPLHWAA+ G+VEACTVLVHAGTK+EL  KD AG TP QLA DKG
Sbjct: 177 LFRDASQERQDKEGCTPLHWAAIGGSVEACTVLVHAGTKKELLIKDNAGYTPFQLATDKG 236

Query: 240 HRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTK 299
           HRQ+A  LS AQ  HR+H G K+C RK  + GYAPIL  +II+ +ILFINSV+A   L K
Sbjct: 237 HRQIAHILSKAQRTHRSHLGAKLCTRKIENFGYAPILLCVIIILVILFINSVLAGSNLAK 296

Query: 300 VTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPI 359
           VTAV+GLW+WT + LA  SL+MFYRCSSKDPGYIKR  ++ N T++EDPLL+IDLNNS +
Sbjct: 297 VTAVIGLWAWTALCLAFVSLLMFYRCSSKDPGYIKRPGELGNPTNTEDPLLSIDLNNSSV 356

Query: 360 WTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGT 419
           W GNWSQLCPTCKIIRPVRSKHCP C  CVEQFDHHCPWISNCVGKRNKRDFF+F+CLGT
Sbjct: 357 WVGNWSQLCPTCKIIRPVRSKHCPTCNRCVEQFDHHCPWISNCVGKRNKRDFFVFICLGT 416

Query: 420 LTSYLASGIAIHRIWTAPH-LPADGTWIHYVLVH-PGLVLFLVLDTIILIAGTTLTSIQA 477
           LTS+L+  IAI RI+T P  +P   TW H+ +VH PG++ FL LD II IA TTLT  QA
Sbjct: 417 LTSFLSGYIAIQRIFTVPSAVPTGETWFHHAVVHYPGIITFLFLDAIIFIAATTLTVAQA 476

Query: 478 YQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQ 537
            QIARNITTNEL+N++RY YLRGPDG+FRNPYNHGC+KNC+DF I G+T DDE+AWPPLQ
Sbjct: 477 SQIARNITTNELSNAIRYGYLRGPDGKFRNPYNHGCRKNCSDFLIQGHT-DDEIAWPPLQ 535

Query: 538 LA 539
            A
Sbjct: 536 RA 537

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478819|ref|XP_004155426.1| PREDICTED: LOW QUALITY PROTEIN: probable S-acyltransferase At2g14255-like [Cucumis sativus]

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/542 (71%), Positives = 449/542 (82%), Gaps = 8/542 (1%)

Query: 1   MASSEIEVVSSTEAIPN-ENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGN 59
           MASSEIEVV+S    PN  +Q + + A+ DV+SASAYGDF+K+R FVE+ GAS+  PD N
Sbjct: 1   MASSEIEVVAS----PNPRSQTNTEVAIVDVYSASAYGDFQKVRSFVEDHGASLLVPDSN 56

Query: 60  GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV 119
           GY+ALQWAALNNF DI QYII+HG DVN+ D   QTALHWAAVRGSI  ADVL+ NGARV
Sbjct: 57  GYYALQWAALNNFPDIVQYIIEHGADVNSCDKLQQTALHWAAVRGSIMAADVLLLNGARV 116

Query: 120 EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179
           EAAD++GYRAVHVAAQYGQT+FLNHIVAK+HAD+D  DNEGRSPLHWAAYKGFADTIRLL
Sbjct: 117 EAADINGYRAVHVAAQYGQTAFLNHIVAKFHADFDVPDNEGRSPLHWAAYKGFADTIRLL 176

Query: 180 LFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKG 239
           LFRDASQ RQDK+GCTPLHWAA+ G+VEACTVLVHAGTK+EL  KD AG TP QLA DKG
Sbjct: 177 LFRDASQERQDKEGCTPLHWAAIGGSVEACTVLVHAGTKKELLIKDNAGYTPFQLATDKG 236

Query: 240 HRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTK 299
           HRQ+A  LS AQ  HR+H G K+C RK  + GYAPIL  +II+ +ILFINSV+A   L K
Sbjct: 237 HRQIAHILSKAQRTHRSHLGAKLCTRKIENFGYAPILLCVIIILVILFINSVLAGSNLAK 296

Query: 300 VTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPI 359
           VTAV+GLW+WT + LA  SL+MFYRCSSKDPGYIKR  ++ N T++EDPLL+IDLNNS +
Sbjct: 297 VTAVIGLWAWTALCLAFVSLLMFYRCSSKDPGYIKRPGELGNPTNTEDPLLSIDLNNSSV 356

Query: 360 WTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGT 419
           W GNWSQLCPTCKIIRPVRSKHCP C  CVEQFDHHCPWISNCVGKRNKR FF+F+CLGT
Sbjct: 357 WVGNWSQLCPTCKIIRPVRSKHCPTCNRCVEQFDHHCPWISNCVGKRNKRXFFVFICLGT 416

Query: 420 LTSYLASGIAIHRIWTAPH-LPADGTWIHYVLVH-PGLVLFLVLDTIILIAGTTLTSIQA 477
           LTS+L+  IAI RI+T P  +P   TW H+ +VH PG++ FL  D II IA TTLT  QA
Sbjct: 417 LTSFLSGYIAIQRIFTVPSAVPTGETWFHHAVVHYPGIITFLFXDAIIFIAATTLTVAQA 476

Query: 478 YQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQ 537
            QIARNITTNEL+N++RY YLRGPDG+FRNPYNHGC+KNC+DF I G+T DDE+AWPPLQ
Sbjct: 477 SQIARNITTNELSNAIRYGYLRGPDGKFRNPYNHGCRKNCSDFLIQGHT-DDEIAWPPLQ 535

Query: 538 LA 539
            A
Sbjct: 536 RA 537

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476095|ref|XP_003608333.1| Palmitoyltransferase [Medicago truncatula] gi|355509388|gb|AES90530.1| Palmitoyltransferase [Medicago truncatula]

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/545 (70%), Positives = 446/545 (81%), Gaps = 8/545 (1%)

Query: 1   MASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNG 60
           MASSEIEVVSS  + P E+Q      + DVF+AS +GD +KLR FVE++GASVS PD NG
Sbjct: 1   MASSEIEVVSSEPSKPQEHQ---LPPILDVFTASIHGDLQKLRFFVEQEGASVSNPDFNG 57

Query: 61  YFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVE 120
           Y+ALQWA+LNNF  I  Y+I HG DVNA D   QTALHWAAVRG++A ADVL++NGARVE
Sbjct: 58  YYALQWASLNNFHHIVLYLIQHGADVNAKDLMLQTALHWAAVRGAMAAADVLLENGARVE 117

Query: 121 AADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL 180
           AAD++GYRAVHVAAQYGQT+FLNHIVA+YHAD+D  DN+GRSPLHWAAYKGFADTIRLLL
Sbjct: 118 AADINGYRAVHVAAQYGQTAFLNHIVARYHADFDVPDNDGRSPLHWAAYKGFADTIRLLL 177

Query: 181 FRDASQGRQDKDG---CTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYD 237
           FRDASQGRQDKDG    TPLHWAALRG+ EAC VLVHAGTK+ELT KD  G TP QLAYD
Sbjct: 178 FRDASQGRQDKDGILCATPLHWAALRGHSEACAVLVHAGTKEELTVKDNTGFTPVQLAYD 237

Query: 238 KGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRL 297
           KGH+ VA +LSN Q  H  HW  K+     +DIGYAPIL  +I+    LFINSVVAAP L
Sbjct: 238 KGHQNVAPFLSNQQRAHSKHWRGKLYCGLVTDIGYAPILLCVIVFLSFLFINSVVAAPNL 297

Query: 298 TKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNS 357
            K+TAV+G WSW  +S +VGSLIMFYRCSS+DPGYI+R  D+    ++EDPLL I+LN+S
Sbjct: 298 KKITAVVGFWSWIALSSSVGSLIMFYRCSSRDPGYIRRPGDLGTLNETEDPLLNIELNSS 357

Query: 358 PIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCL 417
            +WTGNWSQLCPTCKIIRPVRSKHCP CK CVEQFDHHCPWISNCVGKRNKRDFFIF+CL
Sbjct: 358 SVWTGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICL 417

Query: 418 GTLTSYLASGIAIHRIWTA-PHLPADGTWIHYVLV-HPGLVLFLVLDTIILIAGTTLTSI 475
           GT+TS +++ IA+HRIWT+ P +PA  TWIH VLV HPGLV FLV+D ++++A TTLT  
Sbjct: 418 GTITSSVSAVIAVHRIWTSIPAVPAGETWIHQVLVRHPGLVAFLVMDAVVVVATTTLTVT 477

Query: 476 QAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPP 535
           QA  IARN+TTNELANS RY+YLRGPDGRFRNPYNHG  KNCADF + G+T+DD +AWPP
Sbjct: 478 QASMIARNVTTNELANSTRYEYLRGPDGRFRNPYNHGWWKNCADFLLLGHTDDDAIAWPP 537

Query: 536 LQLAA 540
           LQ  A
Sbjct: 538 LQQVA 542

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357151994|ref|XP_003575973.1| PREDICTED: probable S-acyltransferase At2g14255-like [Brachypodium distachyon]

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/539 (61%), Positives = 406/539 (75%), Gaps = 17/539 (3%)

Query: 9   VSSTEAIPNENQNDNQAA------VTDVFSASAYGDFEKLRKFVEEDG--ASVSRPDGNG 60
           +SS+     E Q     A      V DV+SA+AYGD E+LR FVE +G  AS++ PDGNG
Sbjct: 1   MSSSRVAEIERQQQKGGAEPEPDPVVDVYSAAAYGDLERLRGFVEREGGAASLASPDGNG 60

Query: 61  YFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVE 120
           Y ALQWAALNN+  +A YII+HGGDVNA D+  QTALHWAAVRG+ AVADVL++NGAR+E
Sbjct: 61  YHALQWAALNNYPHVALYIIEHGGDVNAQDHAQQTALHWAAVRGATAVADVLLENGARLE 120

Query: 121 AADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL 180
           A DV+GYRAVHVAAQYGQT+ L+HIV+KY AD+DA DNEGRS LHWAAYKG ADTIRLLL
Sbjct: 121 AGDVNGYRAVHVAAQYGQTTLLHHIVSKYGADFDALDNEGRSSLHWAAYKGNADTIRLLL 180

Query: 181 FRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGH 240
           F DA+Q RQDK+GCTPLHWA +RGN+E CT+LVHAGTKQEL  KD  G TP QLA DKGH
Sbjct: 181 FMDANQVRQDKNGCTPLHWAVIRGNLEVCTLLVHAGTKQELKLKDSGGFTPLQLAADKGH 240

Query: 241 RQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKV 300
           R +   LSN+    +  +GDK C  +    GYAPILFS +++ +ILF+NS+V AP  +++
Sbjct: 241 RHLTNILSNST---KASFGDKYCLGQLGKAGYAPILFSYLVILMILFLNSIVFAPDFSRI 297

Query: 301 TAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIW 360
           TA +GLWSW  +SLA+ S ++FYR S K+PGYIK +       D ++PL+ IDL +SP W
Sbjct: 298 TAAVGLWSWVAISLALVSQVVFYRLSRKNPGYIKAN---TKGLDPKEPLMAIDL-SSPTW 353

Query: 361 TGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTL 420
           TG+WSQLCPTCKIIRPVRSKHCP CK CVEQFDHHCPWISNCVGKRNK DF +FLC+G  
Sbjct: 354 TGSWSQLCPTCKIIRPVRSKHCPTCKHCVEQFDHHCPWISNCVGKRNKWDFLVFLCMGIT 413

Query: 421 TSYLASGIAIHRIWTAP-HLPADGTWIHYVLV-HPGLVLFLVLDTIILIAGTTLTSIQAY 478
           T+ L + +   R+WT P  L +  +W H+++  HPG VLF+ +D  +L     L   QA 
Sbjct: 414 TTLLGAAVGFQRLWTEPIILSSSESWTHFMVTKHPGAVLFMFMDIFLLTGALILAGAQAT 473

Query: 479 QIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQ 537
           QIARN+TTNE AN  RY YLRGPDGRFRNPYN GC++NCA F ++GY+ND+E AWP LQ
Sbjct: 474 QIARNLTTNEAANQSRYSYLRGPDGRFRNPYNQGCRRNCAYFLVNGYSNDEEAAWPTLQ 532

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125534723|gb|EAY81271.1| hypothetical protein OsI_36450 [Oryza sativa Indica Group]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/528 (64%), Positives = 412/528 (78%), Gaps = 13/528 (2%)

Query: 13  EAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDG-ASVSRPDGNGYFALQWAALNN 71
           EA  N  + D    V DV+SA+AYGD E+LR FVE DG AS++ PDGNGY ALQWA LNN
Sbjct: 28  EARANGGEGD---PVVDVYSAAAYGDLERLRGFVERDGGASLAAPDGNGYHALQWATLNN 84

Query: 72  FADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVH 131
           +  +A YII+HGGDVN+ DN  QTALHWAAVRG+IA ADVL++NGARVEAADV+GYRAVH
Sbjct: 85  YPHVALYIIEHGGDVNSGDNAQQTALHWAAVRGAIAAADVLLENGARVEAADVNGYRAVH 144

Query: 132 VAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDK 191
           VAAQYGQT+FL+HI++KY AD++  DN+GRSPLHWAAYKG ADTIRLLLF DA+Q RQDK
Sbjct: 145 VAAQYGQTAFLHHIISKYGADFECLDNDGRSPLHWAAYKGNADTIRLLLFMDANQVRQDK 204

Query: 192 DGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
           +GCTPLHWAA+RGN E CTVLVHAGTK+ELT KD  G TP +LA DKGHR ++  LSNA 
Sbjct: 205 NGCTPLHWAAIRGNYEVCTVLVHAGTKEELTLKDSGGFTPVELANDKGHRHLSYILSNAT 264

Query: 252 HMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTV 311
            +    + DK C  ++  IGYAP+LF  +I+ I LF+NS++ AP  +++TA +G+WSW  
Sbjct: 265 KV---TFEDKYCSGRSRKIGYAPVLFCFLIVLITLFLNSIIFAPNFSRITAAVGIWSWGA 321

Query: 312 VSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTC 371
           +SLA  SL+MFYR S K+PGYI   Q      D ++PL+ IDLN+S  WTGNWSQLCPTC
Sbjct: 322 ISLAFASLVMFYRVSRKNPGYI---QANTKRLDPKEPLMEIDLNSSA-WTGNWSQLCPTC 377

Query: 372 KIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIH 431
           KIIRP+RSKHCP CK CVEQFDHHCPWISNCVG+RNK DFF+FLC+GT T++L + I  H
Sbjct: 378 KIIRPMRSKHCPTCKHCVEQFDHHCPWISNCVGRRNKWDFFVFLCMGTTTAFLGAAIGFH 437

Query: 432 RIWTAP-HLPADGTWIHYVLV-HPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNEL 489
           R+WT P  L +  +WI+++L  HPG VLF+ +D  +L     LT  QA QIARN+TTNE 
Sbjct: 438 RLWTEPIILSSSESWINFMLSNHPGAVLFMFMDVFLLTGALILTGAQATQIARNLTTNEA 497

Query: 490 ANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQ 537
           AN  RY YLRGPDGRFRNPY+ GC++NCADF ++GY+ND+E AWP LQ
Sbjct: 498 ANQSRYAYLRGPDGRFRNPYSRGCRRNCADFLVNGYSNDEEAAWPTLQ 545

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	541
TAIR|locus:1006230134	536	AT2G14255 "AT2G14255" [Arabido	0.972	0.981	0.596	2.5e-175
TAIR|locus:2149309	620	TIP1 "TIP GROWTH DEFECTIVE 1"	0.972	0.848	0.553	2.5e-161
ZFIN|ZDB-GENE-070424-194	620	zdhhc17 "zinc finger, DHHC-typ	0.404	0.353	0.358	2.5e-54
FB|FBgn0029137	585	Patsas "Patsas" [Drosophila me	0.406	0.376	0.333	8.4e-52
UNIPROTKB|F1N9E7	601	ZDHHC17 "Uncharacterized prote	0.434	0.391	0.333	4.8e-51
UNIPROTKB|E1BJK1	634	ZDHHC17 "Uncharacterized prote	0.404	0.345	0.345	7.4e-50
UNIPROTKB|F1PRB8	604	ZDHHC17 "Uncharacterized prote	0.404	0.362	0.345	8.8e-50
UNIPROTKB|Q8IUH5	632	ZDHHC17 "Palmitoyltransferase	0.404	0.346	0.345	1.2e-49
UNIPROTKB|E9PTT0	622	Zdhhc17 "Protein Zdhhc17" [Rat	0.404	0.352	0.345	1.4e-49
MGI|MGI:2445110	632	Zdhhc17 "zinc finger, DHHC dom	0.404	0.346	0.345	2e-49

TAIR|locus:1006230134 AT2G14255 "AT2G14255" [Arabidopsis thaliana (taxid:3702)]

 Score = 1703 (604.5 bits), Expect = 2.5e-175, P = 2.5e-175
 Identities = 319/535 (59%), Positives = 392/535 (73%)

Query:     1 MASSEIEVVSSTEAIPNENQNDNQA-AVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGN 59
             M SSEIEVV       N +Q+  ++  +TDVFSASAYGD  +L+ FVE +G+SVS PD N
Sbjct:     1 MDSSEIEVVPLDS---NSHQSPTESPTITDVFSASAYGDLHQLKHFVEHNGSSVSLPDDN 57

Query:    60 GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV 119
             G++ALQWAALNN   +AQYII HGGDVN+ DN  QT LHWAAV+GSI VAD+L+Q+GAR+
Sbjct:    58 GFYALQWAALNNSLHVAQYIIQHGGDVNSADNIQQTPLHWAAVKGSIDVADLLLQHGARI 117

Query:   120 EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL 179
             EA DV+G+RAVHVA+QYGQT+F+NHI+  Y ADY+A D EGRSPLHWAAY GF +T+RLL
Sbjct:   118 EAVDVNGFRAVHVASQYGQTAFVNHIIVDYAADYNALDIEGRSPLHWAAYNGFTETVRLL 177

Query:   180 LFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKG 239
             LFRDA Q RQD  GCTPLHWA ++ NVEACT+LVHAGTK+EL  KD  G TP +LA DKG
Sbjct:   178 LFRDACQNRQDNTGCTPLHWAVIKENVEACTLLVHAGTKEELILKDNTGSTPLKLASDKG 237

Query:   240 HRQVALYLSNAQHMHRNHWGDKI-CGRKTSDIGYAPXXXXXXXXXXXXXXNSVVAAPRLT 298
             HRQ+AL+LS A    +N + DKI CG K  +  YAP               S+V+A  L 
Sbjct:   238 HRQLALFLSKAMRTRKNSFVDKIFCG-KLGETSYAPMLFSLIVILMVLFITSIVSASNLP 296

Query:   299 KVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSP 358
             K+TA++GLW+   +S  V +LI FYR S KDPGY+KR+ + ++   + DPL+ I+  N P
Sbjct:   297 KITAMVGLWACFGLSCGVYALITFYRVSRKDPGYVKRTGEANSQHTANDPLIDINFKN-P 355

Query:   359 IWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLG 418
              W GNWSQLCPTCKIIRPVRSKHCP CK CVEQFDHHCPWISNCVGK+NKR F +F+ +G
Sbjct:   356 SWKGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKKNKRYFLVFVIMG 415

Query:   419 TLTSYLASGIAIHRIWTA-PHLPADGTWI-HYVLVHPGLVLFLVLDTIILIAGTTLTSIQ 476
              LTS++    A+ R+W   P +    +WI H V+ HP   +FL  D +I IA  TLT  Q
Sbjct:   416 ALTSFVGGTTAVQRLWRGIPQVHHGESWIKHIVIEHPDAAVFLFFDLLIFIATMTLTISQ 475

Query:   477 AYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDEL 531
             +Y IARNITTNEL N+ R+ YLRGPDGRF NPYNHG ++NC DF +HGYT DDE+
Sbjct:   476 SYMIARNITTNELWNAKRFSYLRGPDGRFYNPYNHGLRRNCTDFLVHGYTRDDEV 530

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2149309 TIP1 "TIP GROWTH DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1571 (558.1 bits), Expect = 2.5e-161, P = 2.5e-161
 Identities = 298/538 (55%), Positives = 380/538 (70%)

Query:     3 SSEIEVVSSTEAIPNENQNDNQAAV------TDVFSASAYGDFEKLRKFVEEDGASVSRP 56
             SSEIEVV   ++ P EN   +   +       DV++A+AYGD EKL + VE +G+SVS P
Sbjct:     2 SSEIEVVEEIQSNPKENGESSSKGIEEESLKNDVYTAAAYGDLEKLHRLVECEGSSVSEP 61

Query:    57 DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG 116
             D  GY+ALQW+ALNN   +AQY+I+HGGDVNATD+ GQTALHW+AVRG+I VA++L+Q G
Sbjct:    62 DALGYYALQWSALNNRVAVAQYLIEHGGDVNATDHTGQTALHWSAVRGAIQVAELLLQEG 121

Query:   117 ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
             ARV+A D++GY+A HVAAQYGQT+FL H+V+K++AD D  DN+GRSPLHWAAYKGFAD+I
Sbjct:   122 ARVDATDMYGYQATHVAAQYGQTAFLCHVVSKWNADPDVPDNDGRSPLHWAAYKGFADSI 181

Query:   177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
             RLLLF DA +GRQDK+GCTPLHWAA+RGN+EACTVLV AG K++L   DK GLTP QLA 
Sbjct:   182 RLLLFLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKEDLMITDKTGLTPAQLAA 241

Query:   237 DKGHRQVALYLSNAQHMHRNHW-GDKICGRKTSDIGYAPXXXXXXXXXXXXXXNSVVAAP 295
             +K HRQV+ +L NA+ +      G    GR  S +G AP              NSVV A 
Sbjct:   242 EKNHRQVSFFLGNARSLLEKRCDGSSPLGR-LSKLGLAPVLWIMILLLLLVYTNSVVLAS 300

Query:   296 RLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRS-QDIDNHTDSEDPLLTIDL 354
              L K+T  +G  +W    LA   L +FYRCS KDPGYI+ +  D     D E PLL I+L
Sbjct:   301 NLPKLTTGIGALAWLGFILATAGLFLFYRCSRKDPGYIRMNIHDPQTMKDDE-PLLKIEL 359

Query:   355 NNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIF 414
             NN  +  GNW+QLC TCKIIRP+R+KHC  C  CVEQFDHHCPW+SNCVGK+NK +FF+F
Sbjct:   360 NNPALLAGNWTQLCATCKIIRPLRAKHCSTCDRCVEQFDHHCPWVSNCVGKKNKWEFFLF 419

Query:   415 LCLGTLTSYLASGIAIHRIWTAPHLPAD-GTWIHYVLV-HPGLVLFLVLDTIILIAGTTL 472
             L L  L   +  G+ + R+ + P  P+  G W+ +V   H G + FL+++  +  +   L
Sbjct:   420 LLLEVLAMLITGGVTLARVLSDPSAPSSFGAWMSHVASNHVGALSFLLVEFCLFFSVAVL 479

Query:   473 TSIQAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDE 530
             T IQA QI+RNITTNE+AN++RY YLRGP GRFRNPY+ GC++NC+DF + GY  D E
Sbjct:   480 TVIQASQISRNITTNEMANALRYSYLRGPGGRFRNPYDLGCRRNCSDFLVKGYNEDIE 537

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000035 "acyl binding" evidence=IDA

GO:0016417 "S-acyltransferase activity" evidence=IGI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0009932 "cell tip growth" evidence=IMP

ZFIN|ZDB-GENE-070424-194 zdhhc17 "zinc finger, DHHC-type containing 17" [Danio rerio (taxid:7955)]

 Score = 325 (119.5 bits), Expect = 2.5e-54, Sum P(2) = 2.5e-54
 Identities = 81/226 (35%), Positives = 118/226 (52%)

Query:    29 DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
             D+  A+ YG FE+ R+ VE  G  V +PD      L WAA+NN  D+ +Y I  G  V+ 
Sbjct:    48 DIVKATQYGIFERCRELVEA-GYDVRQPDKENVTLLHWAAINNRVDLVKYYISKGAIVDQ 106

Query:    89 TDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
                +   T LHWA  +G +++   L++ GA     D  G   VH+AAQ+G TS + +++A
Sbjct:   107 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCVHLAAQFGHTSIVAYLIA 166

Query:   148 KYHADYDASDNEGRSPLHWAAYKGFA-DTIRLLLFRDASQGRQDK-DGCTPLHWAALRGN 205
             K   D D  D  G +PL WAAY+  + D  RLLL  + S    DK    T LHWA L GN
Sbjct:   167 KGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 225

Query:   206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
                 ++L+ A    +  A++  G TP  LA  + +  +  +L  A+
Sbjct:   226 TTVISLLLEANANVD--AQNIKGETPLDLAKQRKNVWMINHLQEAR 269

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0029137 Patsas "Patsas" [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 8.4e-52, Sum P(2) = 8.4e-52
 Identities = 75/225 (33%), Positives = 115/225 (51%)

Query:    26 AVTDVFSASAYGDFEKLRKFVEEDGAS-VSRPDGNGYFALQWAALNNFADIAQYIIDHGG 84
             ++ D+F     G+  ++   V++ G   +S  D +GY    W ALN    + +Y+I+   
Sbjct:    86 SLDDIFDIIKNGEVSEVENLVDKFGMECLSARDRHGYTPAHWIALNGNVQLMRYLIERTA 145

Query:    85 --DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
               D+      G   +HWA  +G  +V  VL+Q G  V AAD  G   +H+A  YG+T+  
Sbjct:   146 PIDLPCLGTQGPRPIHWACRKGHASVVQVLLQAGVAVNAADFKGLTPLHLACMYGRTATA 205

Query:   143 NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL 202
              +++    A  + +D  G + LHWAAYKG AD +RLL++      + D  G TPLH A L
Sbjct:   206 AYLLGM-GALNNLTDINGDTALHWAAYKGHADLMRLLMYSGVELQKTDNFGSTPLHLACL 264

Query:   203 RGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
              GN+  C  L+   ++ +L  +DK G TP  LA    H+ V   L
Sbjct:   265 SGNM-TCVRLLCEKSQLDLEPRDKNGKTPIMLAQAHQHQDVVRLL 308

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISS

GO:0018345 "protein palmitoylation" evidence=ISS

UNIPROTKB|F1N9E7 ZDHHC17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 324 (119.1 bits), Expect = 4.8e-51, Sum P(2) = 4.8e-51
 Identities = 81/243 (33%), Positives = 128/243 (52%)

Query:    12 TEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNN 71
             +E++  ++  D+ +   D+  A+ YG +E+ R+ VE  G  V +PD      L WAA+NN
Sbjct:    13 SESLGRKSHIDDYST-WDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINN 70

Query:    72 FADIAQYIIDHGGDVNATDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAV 130
               D+ +Y I  G  V+    +   T LHWA  +G +++   L++ GA     D  G   +
Sbjct:    71 RIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCI 130

Query:   131 HVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFA-DTIRLLLFRDASQGRQ 189
             H+AAQ+G TS + +++AK   D D  D  G +PL WAAY+  + D  RLLL  + S    
Sbjct:   131 HLAAQFGHTSIVAYLIAKGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 189

Query:   190 DK-DGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLS 248
             DK    T LHWA L GN    ++L+ AG   +  A++  G +P  LA  + +  +  +L 
Sbjct:   190 DKYHKNTALHWAVLAGNTTVISLLLEAGANVD--AQNIKGESPLDLAKQRKNVWMINHLQ 247

Query:   249 NAQ 251
              A+
Sbjct:   248 EAR 250

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

UNIPROTKB|E1BJK1 ZDHHC17 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 314 (115.6 bits), Expect = 7.4e-50, Sum P(2) = 7.4e-50
 Identities = 78/226 (34%), Positives = 118/226 (52%)

Query:    29 DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
             D+  A+ YG +E+ R+ VE  G  V +PD      L WAA+NN  D+ +Y I  G  V+ 
Sbjct:    60 DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 118

Query:    89 TDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
                +   T LHWA  +G +++   L++ GA     D  G   +H+AAQ+G TS + +++A
Sbjct:   119 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 178

Query:   148 KYHADYDASDNEGRSPLHWAAYKGFA-DTIRLLLFRDASQGRQDK-DGCTPLHWAALRGN 205
             K   D D  D  G +PL WAAY+  + D  RLLL  + S    DK    T LHWA L GN
Sbjct:   179 KGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 237

Query:   206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
                 ++L+ AG   +  A++  G +   LA  + +  +  +L  A+
Sbjct:   238 TTVISLLLEAGANVD--AQNIKGESALDLAKQRKNVWMINHLQEAR 281

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PRB8 ZDHHC17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 314 (115.6 bits), Expect = 8.8e-50, Sum P(2) = 8.8e-50
 Identities = 78/226 (34%), Positives = 118/226 (52%)

Query:    29 DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
             D+  A+ YG +E+ R+ VE  G  V +PD      L WAA+NN  D+ +Y I  G  V+ 
Sbjct:    30 DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 88

Query:    89 TDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
                +   T LHWA  +G +++   L++ GA     D  G   +H+AAQ+G TS + +++A
Sbjct:    89 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 148

Query:   148 KYHADYDASDNEGRSPLHWAAYKGFA-DTIRLLLFRDASQGRQDK-DGCTPLHWAALRGN 205
             K   D D  D  G +PL WAAY+  + D  RLLL  + S    DK    T LHWA L GN
Sbjct:   149 KGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 207

Query:   206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
                 ++L+ AG   +  A++  G +   LA  + +  +  +L  A+
Sbjct:   208 TTVISLLLEAGANVD--AQNIKGESALDLAKQRKNVWMINHLQEAR 251

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q8IUH5 ZDHHC17 "Palmitoyltransferase ZDHHC17" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 1.2e-49, Sum P(2) = 1.2e-49
 Identities = 78/226 (34%), Positives = 118/226 (52%)

Query:    29 DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
             D+  A+ YG +E+ R+ VE  G  V +PD      L WAA+NN  D+ +Y I  G  V+ 
Sbjct:    60 DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 118

Query:    89 TDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
                +   T LHWA  +G +++   L++ GA     D  G   +H+AAQ+G TS + +++A
Sbjct:   119 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 178

Query:   148 KYHADYDASDNEGRSPLHWAAYKGFA-DTIRLLLFRDASQGRQDK-DGCTPLHWAALRGN 205
             K   D D  D  G +PL WAAY+  + D  RLLL  + S    DK    T LHWA L GN
Sbjct:   179 KGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 237

Query:   206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
                 ++L+ AG   +  A++  G +   LA  + +  +  +L  A+
Sbjct:   238 TTVISLLLEAGANVD--AQNIKGESALDLAKQRKNVWMINHLQEAR 281

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IDA

GO:0042953 "lipoprotein transport" evidence=IDA

GO:0004871 "signal transducer activity" evidence=IMP

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IMP

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IDA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007165 "signal transduction" evidence=IMP

GO:0015693 "magnesium ion transport" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E9PTT0 Zdhhc17 "Protein Zdhhc17" [Rattus norvegicus (taxid:10116)]

 Score = 313 (115.2 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
 Identities = 78/226 (34%), Positives = 118/226 (52%)

Query:    29 DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
             D+  A+ YG +E+ R+ VE  G  V +PD      L WAA+NN  D+ +Y I  G  V+ 
Sbjct:    50 DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 108

Query:    89 TDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
                +   T LHWA  +G +++   L++ GA     D  G   +H+AAQ+G TS + +++A
Sbjct:   109 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 168

Query:   148 KYHADYDASDNEGRSPLHWAAYKGFA-DTIRLLLFRDASQGRQDK-DGCTPLHWAALRGN 205
             K   D D  D  G +PL WAAY+  + D  RLLL  + S    DK    T LHWA L GN
Sbjct:   169 KGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 227

Query:   206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
                 ++L+ AG   +  A++  G +   LA  + +  +  +L  A+
Sbjct:   228 TTVISLLLEAGGNVD--AQNVKGESALDLAKQRKNVWMINHLQEAR 271

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IEA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=IEA

GO:0030660 "Golgi-associated vesicle membrane" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=IEA

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

MGI|MGI:2445110 Zdhhc17 "zinc finger, DHHC domain containing 17" [Mus musculus (taxid:10090)]

 Score = 313 (115.2 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 78/226 (34%), Positives = 118/226 (52%)

Query:    29 DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
             D+  A+ YG +E+ R+ VE  G  V +PD      L WAA+NN  D+ +Y I  G  V+ 
Sbjct:    60 DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 118

Query:    89 TDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
                +   T LHWA  +G +++   L++ GA     D  G   +H+AAQ+G TS + +++A
Sbjct:   119 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 178

Query:   148 KYHADYDASDNEGRSPLHWAAYKGFA-DTIRLLLFRDASQGRQDK-DGCTPLHWAALRGN 205
             K   D D  D  G +PL WAAY+  + D  RLLL  + S    DK    T LHWA L GN
Sbjct:   179 KGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 237

Query:   206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
                 ++L+ AG   +  A++  G +   LA  + +  +  +L  A+
Sbjct:   238 TTVISLLLEAGGNVD--AQNVKGESALDLAKQRKNVWMINHLQEAR 281

GO:0000139 "Golgi membrane" evidence=ISO

GO:0004871 "signal transducer activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0007165 "signal transduction" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISO

GO:0015693 "magnesium ion transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016409 "palmitoyltransferase activity" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0018345 "protein palmitoylation" evidence=IDA

GO:0019706 "protein-cysteine S-palmitoleyltransferase activity" evidence=ISO

GO:0030660 "Golgi-associated vesicle membrane" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042953 "lipoprotein transport" evidence=ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3EC11	ZDHC2_ARATH	2, ., 3, ., 1, ., -	0.6063	0.9704	0.9794	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038530001 SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (537 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	541
pfam01529	167	pfam01529, zf-DHHC, DHHC palmitoyltransferase	1e-39
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-34
COG5273	309	COG5273, COG5273, Uncharacterized protein containi	7e-33
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-13
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	9e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	2e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.001
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.004

>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase

 Score =  141 bits (357), Expect = 1e-39
 Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 8/175 (4%)

Query: 319 LIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVR 378
           L  +++    DPGY+ ++          D               +  + C TC II+P R
Sbjct: 1   LWSYFKTIFTDPGYVPKNPTEKEQEKQPDEESEEGDEE------DELKFCSTCNIIKPPR 54

Query: 379 SKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPH 438
           S HC  C  CV +FDHHCPW++NC+G+RN + F +FL   TL   L   ++ + +     
Sbjct: 55  SHHCRVCNRCVLRFDHHCPWLNNCIGRRNHKYFLLFLLYLTLYLILLLVLSFYYLVY--L 112

Query: 439 LPADGTWIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSV 493
           +     +   +L     ++ LVL    L+  + L     Y I +NITT E     
Sbjct: 113 IRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYLILKNITTYEYIKKK 167

This family includes the well known DHHC zinc binding domain as well as three of the four conserved transmembrane regions found in this family of palmitoyltransferase enzymes. Length = 167

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  124 bits (314), Expect = 4e-34
 Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 1/127 (0%)

Query: 87  NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
           NA D +G+T LH AA  G + V  +L++NGA V A D  G   +H+AA+ G    +  ++
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV 206
            +  AD +A D +G +PLH AA  G  D ++LLL   A    +DKDG TPLH AA  G++
Sbjct: 61  -EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119

Query: 207 EACTVLV 213
           E   +L+
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

 Score =  127 bits (320), Expect = 7e-33
 Identities = 66/244 (27%), Positives = 100/244 (40%), Gaps = 35/244 (14%)

Query: 276 LFSIIILCIILFINSVVAAPRLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKR 335
           LF +  + +   +  V +         VL +  + V+   V +   +      DPGY+  
Sbjct: 34  LFLLSRIVVYTLLVIVKSLS-----LVVLFIILFIVIL--VLASFSYLLLLVSDPGYLGE 86

Query: 336 SQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHH 395
           +  +  + ++   LL      +  +       C TC I +P RS HC  C  CV +FDHH
Sbjct: 87  NITLSGYRETISRLLDDGKFGTENF-------CSTCNIYKPPRSHHCSICNRCVLKFDHH 139

Query: 396 CPWISNCVGKRNKRDFFIFLCLGTLTS--YLASG-IAIHRIWTAPHLPADGTWIHYVLVH 452
           CPWI+NCVG RN R F+ FL    L +   L S    I  I++  H       I +++  
Sbjct: 140 CPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDT--SLAICFLIF- 196

Query: 453 PGLVLFLVLDTIILIAGTT---------LTSIQAYQIARNITTNELANSVRYDYLRGPDG 503
            G  L  V+  II               LT+I+  QI+R  +T E          R  + 
Sbjct: 197 -GCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFP-----LCRESNL 250

Query: 504 RFRN 507
            F N
Sbjct: 251 PFTN 254

Length = 309

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A++ G  E ++  +E  GA V+  D +G   L  AA N   +I + +++ G DVNA D +
Sbjct: 14  AASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD 72

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
           G T LH AA  G++ V  +L+++GA V A D  G   +H+AA+ G    +  ++
Sbjct: 73  GNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 80.9 bits (200), Expect = 3e-18
 Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 4/109 (3%)

Query: 154 DASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV 213
           +A D +GR+PLH AA  G  + ++LLL   A    +D DG TPLH AA  G++E   +L+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 214 HAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL--SNAQHMHRNHWGD 260
             G   ++ A+DK G TP  LA   G+  V   L    A    R+  G 
Sbjct: 61  EKGA--DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGR 107

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.1 bits (193), Expect = 8e-18
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+  G+ E ++  +E+ GA V+   G+   AL  AA N   +I + +++HG DVNA D +
Sbjct: 4   AAKNGNLELVKLLLEK-GADVN--LGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAAD 123
           G TALH AA  G++ +  +L+++GA +   D
Sbjct: 61  GNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.1 bits (180), Expect = 4e-16
 Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 64  LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD 123
           L  AA N   ++ + +++ G DVN  D +  TALH AA  G++ +  +L+++GA V A D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 124 VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD 157
             G  A+H+AA+ G    +  ++ ++ AD +  D
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLL-EHGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 72.5 bits (177), Expect = 2e-14
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 18/190 (9%)

Query: 3   SSEIEVVSSTEAIPNENQNDNQAAVTD-VFSASAYGDFEKLRKFVEEDGASVSRPDGNGY 61
              +  +    ++   N +D +  +   +    A    E L K + +    ++  D +G 
Sbjct: 17  DLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDR--HLAARDLDGR 74

Query: 62  FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGS-----IAVADVLVQNG 116
             L  AA      I + ++  G DVNA D +G T LH AA+ G+     I VA +L++ G
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134

Query: 117 ARVE---AADVHGYRAVHVAAQYGQTSFLNHIVA---KYHADYDASDNEGRSPLHWAAYK 170
           A ++     D  G   +H AA  G       IV    +  AD ++ ++ G + L  AA  
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGD----ADIVELLLEAGADPNSRNSYGVTALDPAAKN 190

Query: 171 GFADTIRLLL 180
           G  + ++LLL
Sbjct: 191 GRIELVKLLL 200

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 64.6 bits (158), Expect = 5e-13
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 131 HVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD 190
           H+AA+ G    +  ++ +  AD +  D +  + LH AA  G  + ++LLL   A    +D
Sbjct: 2   HLAAKNGNLELVKLLL-EKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 191 KDGCTPLHWAALRGNVEACTVLVHAG 216
           KDG T LH AA  GN+E   +L+  G
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHG 84

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 59/225 (26%), Positives = 91/225 (40%), Gaps = 18/225 (8%)

Query: 36  YGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNF---ADIAQYIIDHGGDVNATDNN 92
                 + K + + GA V+  D  G   L    L+ F     + + ++  G DVNA D  
Sbjct: 93  NATTLDVIKLLIKAGADVNAKDKVGRTPLH-VYLSGFNINPKVIRLLLRKGADVNALDLY 151

Query: 93  GQTALHWAAVRG---SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
           G T L    ++    ++ +  +L+  GA V A D      +H   Q  +      IV + 
Sbjct: 152 GMTPLA-VLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPR--ARIVREL 208

Query: 150 HA---DYDASDNEGRSPLHWAAYKGFADTIRL--LLFRDASQGRQDKDGCTPLHWAALRG 204
                D  A+D  G +PLH  A         +  LL    S   +++ G TPLH+AA+  
Sbjct: 209 IRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFN 268

Query: 205 NVEACTVLVHAGTKQELTAKDKAGLTPTQLAY-DKGHRQVALYLS 248
           N  AC  L+  G   ++ A    G TP  L   +   R V   L+
Sbjct: 269 NPRACRRLIALGA--DINAVSSDGNTPLSLMVRNNNGRAVRAALA 311

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.8 bits (166), Expect = 5e-12
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 19/175 (10%)

Query: 61  YFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR--GSIAVADVLVQNGAR 118
           Y +     L +  +I + ++++G +VNA DNNG T L +A  +   S ++ + L+ NGA 
Sbjct: 74  YLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN 133

Query: 119 VEAADVHGYRAVHVAAQYGQTS------FLNHIVA-----------KYHADYDASDNEGR 161
           V   +  G   +H+  +  +         ++  V             Y    +  D  G 
Sbjct: 134 VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGF 193

Query: 162 SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
           +PLH+A Y    + ++ LL   A+    +K G TPLH A L  N E   +L++ G
Sbjct: 194 TPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG 248

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.4 bits (159), Expect = 3e-11
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 5/179 (2%)

Query: 23  NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
           +    T +  A   GD E ++   E  GA V+  D NG + +  A  +NF DI + +++ 
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEY-GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK 179

Query: 83  GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
           G   N  DNNG++ LH AA  G  A   +L+ +G  +     +G+  +H A  + +++  
Sbjct: 180 GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIE 239

Query: 143 NHIVAKYHADYDASDNEGRSPLHWA-AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA 200
             I    +A  +  D +G +PLH A       D I +LL+  A    +D  G  P+  A
Sbjct: 240 LLI---NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 64.2 bits (156), Expect = 6e-11
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 17/164 (10%)

Query: 44  KFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR 103
           K + + G  V+  D      L +A      +  + + ++G DVN  D+NG   +H A   
Sbjct: 108 KTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKH 167

Query: 104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL-------NHIVAKYHADYDAS 156
               +  +L++ GA     D +G   +H AA+YG  + +       NHI+ K        
Sbjct: 168 NFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKC------- 220

Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA 200
              G +PLH A       +   LL  +AS   QD DG TPLH A
Sbjct: 221 -KNGFTPLHNAII--HNRSAIELLINNASINDQDIDGSTPLHHA 261

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTA 223
           LH AA  G  + ++LLL + A     D D  T LH AA  GN+E   +L+  G    + A
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGAD--VNA 56

Query: 224 KDKAGLTPTQLAYDKGHRQVALYL 247
           KDK G T   LA   G+ ++   L
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 60.2 bits (145), Expect = 3e-10
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 12/188 (6%)

Query: 73  ADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRA-VH 131
             +A  ++      N +D      L  A +  +     +L     R  AA     R  +H
Sbjct: 19  LLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLH 78

Query: 132 VAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKG-----FADTIRLLLFRDASQ 186
            AA  G    +  ++A   AD +A D +G +PLH AA  G       +  +LLL   A  
Sbjct: 79  SAASKGDDKIVKLLLAS-GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL 137

Query: 187 ---GRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
                +D+DG TPLHWAAL G+ +   +L+ AG   +  +++  G+T    A   G  ++
Sbjct: 138 DVNNLRDEDGNTPLHWAALNGDADIVELLLEAG--ADPNSRNSYGVTALDPAAKNGRIEL 195

Query: 244 ALYLSNAQ 251
              L +  
Sbjct: 196 VKLLLDKG 203

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 6/161 (3%)

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
           +G   ++ A     ++  + ++ HG   +    + ++ LH A   G +   + L+  G  
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 119 VEAADV---HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADT 175
            +  DV    G   +H+A    +   +  ++    AD D  + +  SPLH A   G    
Sbjct: 94  AD--DVFYKDGMTPLHLATILKKLDIMKLLI-ARGADPDIPNTDKFSPLHLAVMMGDIKG 150

Query: 176 IRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
           I LL+   A    +D  GCTPL  A  +G++  C +L+ +G
Sbjct: 151 IELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 46  VEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWA 100
           +E     ++  DGNG   L  AA     ++ Q+++  G D+N  D++G TAL  A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 55  RPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQ 114
             D +G   L WAALN  ADI + +++ G D N+ ++ G TAL  AA  G I +  +L+ 
Sbjct: 142 LRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD 201

Query: 115 NGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK 148
            G  +              A   + + LN     
Sbjct: 202 KGLHLSLL--KFNLEGVANANVSKRNILNLTSLI 233

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 55.4 bits (133), Expect = 4e-08
 Identities = 52/201 (25%), Positives = 79/201 (39%), Gaps = 26/201 (12%)

Query: 73  ADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGA--------------- 117
           A I +  I HG D+N  +      L  A   G+  +  +L+ NG                
Sbjct: 48  AKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMI 107

Query: 118 --------RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY 169
                    V   D      +H A + G    +  +  +Y AD +  D+ G  P+H A  
Sbjct: 108 KTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLF-EYGADVNIEDDNGCYPIHIAIK 166

Query: 170 KGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGL 229
             F D I+LLL + A    +D +G +PLH AA  G+     +L+  G    +  K K G 
Sbjct: 167 HNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN--HIMNKCKNGF 224

Query: 230 TPTQLAYDKGHRQVALYLSNA 250
           TP   A       + L ++NA
Sbjct: 225 TPLHNAIIHNRSAIELLINNA 245

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV 213
           GR+ LH AA  G  + ++ LL +     R D+DG T LH AA  GN+E   +L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 20/187 (10%)

Query: 25  AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNF----ADIAQYII 80
           AA+ D    ++    E++R+ +   GA V+     G   L    L+       DI + ++
Sbjct: 13  AALYDYLLNASNVTVEEVRRLLA-AGADVNFRGEYGKTPLH-LYLHYSSEKVKDIVRLLL 70

Query: 81  DHGGDVNATDNNGQTALHWAAVRGS-IAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139
           + G DVNA +  G T LH      + + V  +L++ GA V A D  G   +HV   Y   
Sbjct: 71  EAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV---YLSG 127

Query: 140 SFLNHIVAKY----HADYDASDNEGRSPLHWAAYKGF----ADTIRLLLFRDASQGRQDK 191
             +N  V +      AD +A D  G +PL             + +RLL+   A     D 
Sbjct: 128 FNINPKVIRLLLRKGADVNALDLYGMTPLA--VLLKSRNANVELLRLLIDAGADVYAVDD 185

Query: 192 DGCTPLH 198
              + LH
Sbjct: 186 RFRSLLH 192

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 145 IVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA 200
           ++     D +A+D  G +PLH AA  G  + ++ LL        +D DG T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 2/142 (1%)

Query: 81  DHGGDVNATDNNGQTALHWAAVRGSIA-VADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139
           D G  VN+ D+   T LH A+   S++ +   L++ GA V A ++ G   +++ A+ G  
Sbjct: 261 DAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYD 320

Query: 140 SFLNHIVAKYHADYDASDNEGRSPLHWAA-YKGFADTIRLLLFRDASQGRQDKDGCTPLH 198
           +     +    AD +A+D    +PLH A+      D +  LL   A+   +D    TP+H
Sbjct: 321 TENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIH 380

Query: 199 WAALRGNVEACTVLVHAGTKQE 220
           +AA+R NV     L+  G   E
Sbjct: 381 YAAVRNNVVIINTLLDYGADIE 402

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 20/51 (39%), Positives = 34/51 (66%)

Query: 63  ALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLV 113
           AL  AA++   ++ +Y+++ G D+N TD +G TALH AA  G++ V  +L+
Sbjct: 4   ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 5/146 (3%)

Query: 38  DFEKLRKFVEEDGASVSRPDGNGYFAL-QWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
           D E +R  +   GA V+  D      L Q + L+   DI   +++ G +VNA D   +T 
Sbjct: 320 DTENIRTLIML-GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTP 378

Query: 97  LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLN-HIVAKYHADYDA 155
           +H+AAVR ++ + + L+  GA +EA       A+H A   G   +++   +    A+ ++
Sbjct: 379 IHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFAL-CGTNPYMSVKTLIDRGANVNS 437

Query: 156 SDNEGRSPLHWAAYKGFA-DTIRLLL 180
            + +  +PLH+A  K    D I +LL
Sbjct: 438 KNKDLSTPLHYACKKNCKLDVIEMLL 463

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 4/129 (3%)

Query: 73  ADIAQYIIDHGGDVNATD-NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVH 131
           A+I + ++ +G D+N  D + G TALH+A       + ++L+  GA V   D      +H
Sbjct: 147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLH 206

Query: 132 VAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA-AYKGFADTIRLLLFRDASQGRQD 190
            A ++     + HI+ +  A  DA D  G +PLH +  Y    D ++LLL        + 
Sbjct: 207 HAVKHYNKPIV-HILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS 265

Query: 191 K-DGCTPLH 198
              G T LH
Sbjct: 266 YILGLTALH 274

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 41  KLRKFVEEDGASVSRPDGN-GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHW 99
           ++ K +   GA ++  D + G  AL +A  N    + + ++ +G +VN  D    + LH 
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHH 207

Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA-SDN 158
           A    +  +  +L++NGA  +A D  G   +H++  Y +   +  ++ ++  D +A S  
Sbjct: 208 AVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI 267

Query: 159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL-RGNVEACTVLV 213
            G + LH +        ++LLL   A     +    TPL  A      +    +L+
Sbjct: 268 LGLTALHSSIKS--ERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILI 321

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 30/189 (15%)

Query: 73  ADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA-----VADVLVQNGARVEAADVHGY 127
            D+ + ++D+G D+N++  N  T LH+ +           +  +L++ GA V A D +G 
Sbjct: 48  IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGI 107

Query: 128 RAVHVAAQYGQTSFLNHIVA---KYHADYDASDNEGRSPLHWAA--------------YK 170
             +  A      S+   IV       A+ +  +++G + LH                  K
Sbjct: 108 TPLLYAISKKSNSY--SIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK 165

Query: 171 GF----ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDK 226
           G      + +  LL        +D  G TPLH+A    N E    L+  G        +K
Sbjct: 166 GVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA--NPNLVNK 223

Query: 227 AGLTPTQLA 235
            G TP  +A
Sbjct: 224 YGDTPLHIA 232

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 51.6 bits (123), Expect = 8e-07
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 6/157 (3%)

Query: 48  EDGASVSRPDGNGYFALQWAALNNF-ADIAQYIIDHGGDVNATDNNGQTALHWAAV--RG 104
           E GA V+  +  G   L   A N +  +  + +I  G DVNA D    T LH A+   R 
Sbjct: 295 ERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRN 354

Query: 105 SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPL 164
              V   L++ GA V A D      +H AA       +N ++  Y AD +A   +  + L
Sbjct: 355 KDIVI-TLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLL-DYGADIEALSQKIGTAL 412

Query: 165 HWAAYKGFADT-IRLLLFRDASQGRQDKDGCTPLHWA 200
           H+A         ++ L+ R A+   ++KD  TPLH+A
Sbjct: 413 HFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA 449

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 23/166 (13%)

Query: 41  KLRKFVEEDGASVSRPDGNGYFALQWAALN--NFADIAQYIIDHGGDVNATDNNGQTALH 98
           ++ K + E GA+V+ PD NG   L +A     N   I +Y++D+G +VN  +++G+  LH
Sbjct: 87  EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLH 146

Query: 99  WAAVRG---SIAVADVLVQNGARVEA----------------ADVHGYRAVHVAAQYGQT 139
              +      + +  +L+  G  + A                 DV+G+  +H A      
Sbjct: 147 -LYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP 205

Query: 140 SFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
            F+ +++    A+ +  +  G +PLH A      +  +LLL    S
Sbjct: 206 EFVKYLL-DLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 38/174 (21%)

Query: 106 IAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLH 165
           + V D+L  NG   E  D +    +   A  G  + L  ++ K   D D  D++GR+PLH
Sbjct: 507 LNVGDLLGDNGG--EHDDPNMASNLLTVASTGNAALLEELL-KAKLDPDIGDSKGRTPLH 563

Query: 166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHW-------------------------- 199
            AA KG+ D + +LL    +   +D +G T L W                          
Sbjct: 564 IAASKGYEDCVLVLLKHACNVHIRDANGNTAL-WNAISAKHHKIFRILYHFASISDPHAA 622

Query: 200 ------AALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
                 AA R ++ A   L+  G    + ++D  G T  Q+A  + H  +   L
Sbjct: 623 GDLLCTAAKRNDLTAMKELLKQGL--NVDSEDHQGATALQVAMAEDHVDMVRLL 674

Length = 823

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA 227
           A  G A   R+LL   A    +D DG TPLH A   G+V+   VL+  G   + T  DK 
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA--DPTLLDKD 147

Query: 228 GLTPTQLAYDKGHRQVALYLSNAQHMHRN 256
           G TP +LA + G R+V   LS     H  
Sbjct: 148 GKTPLELAEENGFREVVQLLSRHSQCHFE 176

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 79  IIDHGG-DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           +++HG  D+NATD NG T LH AA  G++ +   L++ G  +   D  G  A+ +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 126 GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL 180
           G  A+H AA  G+   + +++ K   D + +D +G + LH AA  G  + ++LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 178 LLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA 235
           LL          D +G TPLH AA  G +E    L+  G   +L  +D  GLT   LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG--VDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 6/170 (3%)

Query: 17  NENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIA 76
           N  ++D+    +++ + ++ G+   L + ++         D  G   L  AA   + D  
Sbjct: 516 NGGEHDDPNMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIAASKGYEDCV 574

Query: 77  QYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYRAVHVAAQ 135
             ++ H  +V+  D NG TAL  A       +  +L    +    +D H     +  AA+
Sbjct: 575 LVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFAS---ISDPHAAGDLLCTAAK 631

Query: 136 YGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
               + +  ++ K   + D+ D++G + L  A  +   D +RLL+   A 
Sbjct: 632 RNDLTAMKELL-KQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD 680

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 92  NGQTALHWAAVRGSIAVADVLVQNGARVEAAD 123
           +G T LH AA  G + V  +L++ GA V A D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 95  TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLN 143
           TALH AA+ G + +   L++ G  +   D  G  A+H+AA+ G    L 
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 44.9 bits (106), Expect = 9e-05
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 26  AVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGD 85
           A+ +  SA  +  F  L  F     AS+S P   G   L  AA  N     + ++  G +
Sbjct: 594 ALWNAISAKHHKIFRILYHF-----ASISDPHAAGDL-LCTAAKRNDLTAMKELLKQGLN 647

Query: 86  VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
           V++ D+ G TAL  A     + +  +L+ NGA V+ A+  
Sbjct: 648 VDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTD 687

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 51/219 (23%), Positives = 82/219 (37%), Gaps = 33/219 (15%)

Query: 48  EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA 107
           E GA V+  D      + +AA    A +   ++ +G DVN    +  + L  A    +I 
Sbjct: 166 EGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNID 225

Query: 108 VADVLVQN-----------------------------GARVEAADVHGYRAVHVAAQYGQ 138
               ++ N                             G  V + D      +H A+Q   
Sbjct: 226 TIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPS 285

Query: 139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF-ADTIRLLLFRDASQGRQDKDGCTPL 197
            S L   + +  AD +A + +G +PL+  A  G+  + IR L+   A     D+   TPL
Sbjct: 286 LSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPL 345

Query: 198 HWAA-LRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA 235
           H A+ L  N +    L+  G    + A+D    TP   A
Sbjct: 346 HQASTLDRNKDIVITLLELGAN--VNARDYCDKTPIHYA 382

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDN 91
          +G   L  AA N   ++ + +++ G DVNA D 
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 15/201 (7%)

Query: 44  KFVEE---DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWA 100
           +FVEE    G S +  D +G + L  A+  N   I   ++ HG D NA D   +T L++ 
Sbjct: 53  RFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYL 112

Query: 101 AVRGS--IAVADVLVQNGARV-EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD 157
           +      I   ++LVQ GA++  + D  G   +       +  F   +   + A     D
Sbjct: 113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEA--RIVD 170

Query: 158 NEGRSPL--HWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALR--GNVEACTVLV 213
             G++ +  H  +    A TI  ++    S  + D DG TPLH    +   NV+   +L+
Sbjct: 171 KFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL 230

Query: 214 HAGTKQELTAKDKAGLTPTQL 234
            +    ++  ++K G +P  L
Sbjct: 231 PS---TDVNKQNKFGDSPLTL 248

Length = 446

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 83  GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
             D +  D+ G+T LH AA +G      VL+++   V   D +G  A+  A         
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIF 607

Query: 143 NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL 202
             +   YH    +  +     L  AA +     ++ LL +  +   +D  G T L  A  
Sbjct: 608 RIL---YHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA 664

Query: 203 RGNVEACTVLVHAG 216
             +V+   +L+  G
Sbjct: 665 EDHVDMVRLLIMNG 678

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 40/244 (16%)

Query: 75  IAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA 134
           IA+ +++ G DVNA D    T +H+AA RG+  + ++L+  GA V    +     +  A 
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 135 QYGQTSFLNHIV---------------AKYHAD-------YDAS------DNEGRSPLHW 166
                  +  I+               A  + D       YDA       D+   +PLH 
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHH 279

Query: 167 AAYK-GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRG-NVEACTVLVHAGTKQELTAK 224
           A+     +  +  LL R A    ++  G TPL+  A  G + E    L+  G   ++ A 
Sbjct: 280 ASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGA--DVNAA 337

Query: 225 DKAGLTPTQLA--YDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIIL 282
           D+  +TP   A   D+    V   L    +++   + DK      + I YA +  +++I+
Sbjct: 338 DRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK------TPIHYAAVRNNVVII 391

Query: 283 CIIL 286
             +L
Sbjct: 392 NTLL 395

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 112 LVQNG-ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
           L+++G   + A D +G   +H+AA+YG    +  ++ K   D +  D++G + L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 192 DGCTPLHWAALRGNVEACTVLVHAG 216
           DG TPLH AA  G++E   +L+ AG
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAG 25

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 48/167 (28%), Positives = 61/167 (36%), Gaps = 39/167 (23%)

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ--TSFLNHIVAKYH 150
           G TALH AA R +  +  +L++ GA V A      RA        Q   SF       YH
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPA------RACGDFFVKSQGVDSF-------YH 174

Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV---- 206
                    G SPL+ AA  G    + LL    A     D  G T LH   +        
Sbjct: 175 ---------GESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEY 225

Query: 207 ---------EACTVLVHAGTKQELTA-KDKAGLTPTQLAYDKGHRQV 243
                     A ++L      +EL    +  GLTP +LA  K  R V
Sbjct: 226 EELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLA-AKEGRIV 271

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 19/74 (25%), Positives = 36/74 (48%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           G  ++  D  G+  L +A  NN  +  +Y++D G + N  +  G T LH A +  +  + 
Sbjct: 182 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIF 241

Query: 110 DVLVQNGARVEAAD 123
            +L+ NG  ++   
Sbjct: 242 KLLLNNGPSIKTII 255

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 8/147 (5%)

Query: 92  NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHA 151
             Q AL  A + G + +A  L+  G         G   + +A ++ + S    ++ K+ A
Sbjct: 1   MDQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKF-RDSEAIKLLMKHGA 59

Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD---KDGCTPLHWAALRGNVEA 208
             D    +  S LH A  +G    +  LL  D  +   D   KDG TPLH A +   ++ 
Sbjct: 60  IPDVKYPDIESELHDAVEEGDVKAVEELL--DLGKFADDVFYKDGMTPLHLATILKKLDI 117

Query: 209 CTVLVHAGTKQELTAKDKAGLTPTQLA 235
             +L+  G   ++   DK   +P  LA
Sbjct: 118 MKLLIARGADPDIPNTDK--FSPLHLA 142

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDK 191
           +G +PLH AA  G  + ++LLL   A    +DK
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 101 AVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEG 160
           A  G    A +L+  GA     D  G   +H+A   G    +  ++ ++ AD    D +G
Sbjct: 90  AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVR-VLLEFGADPTLLDKDG 148

Query: 161 RSPLHWAAYKGFADTIRLLL 180
           ++PL  A   GF + ++LL 
Sbjct: 149 KTPLELAEENGFREVVQLLS 168

Length = 664

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	541
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG1314	414	consensus DHHC-type Zn-finger protein [General fun	100.0
KOG1315	307	consensus Predicted DHHC-type Zn-finger protein [G	100.0
KOG1311	299	consensus DHHC-type Zn-finger proteins [General fu	100.0
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG1313	309	consensus DHHC-type Zn-finger proteins [General fu	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG1312	341	consensus DHHC-type Zn-finger proteins [General fu	99.98
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.84
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.82
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.69
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.68
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.52
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.51
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.41
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.38
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.38
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.36
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.36
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.25
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.93
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.87
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.83
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.82
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.78
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.74
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.7
PF13606	30	Ank_3: Ankyrin repeat	98.7
PF13606	30	Ank_3: Ankyrin repeat	98.62
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.61
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.6
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.55
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.52
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.4
KOG0522	560	consensus Ankyrin repeat protein [General function	98.32
KOG0522	560	consensus Ankyrin repeat protein [General function	98.32
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.19
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.17
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.09
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.05
KOG2384	223	consensus Major histocompatibility complex protein	98.02
KOG2384	223	consensus Major histocompatibility complex protein	97.96
KOG0511	516	consensus Ankyrin repeat protein [General function	97.94
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.93
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.89
KOG0511	516	consensus Ankyrin repeat protein [General function	97.69
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.65
KOG2505	591	consensus Ankyrin repeat protein [General function	96.55
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.35
KOG2505	591	consensus Ankyrin repeat protein [General function	96.11
COG5273	309	Uncharacterized protein containing DHHC-type Zn fi	96.02
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.36
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.03
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.59
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.52
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.07
KOG1311	299	consensus DHHC-type Zn-finger proteins [General fu	89.95
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.77
PF01529	174	zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0	87.83
KOG3614	1381	consensus Ca2+/Mg2+-permeable cation channels (LTR	86.69
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	84.49
PRK04136	48	rpl40e 50S ribosomal protein L40e; Provisional	83.07
KOG1314	414	consensus DHHC-type Zn-finger protein [General fun	81.71
PF13248	26	zf-ribbon_3: zinc-ribbon domain	81.28
PTZ00303	1374	phosphatidylinositol kinase; Provisional	81.14

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=4.5e-79  Score=601.11  Aligned_cols=487  Identities=34%  Similarity=0.570  Sum_probs=348.4

Q ss_pred             cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCC-CCchHHHHHHHh
Q 009183           25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDN-NGQTALHWAAVR  103 (541)
Q Consensus        25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~-~g~tpL~~A~~~  103 (541)
                      .....++.|++.|+++.++.+++..+.+++..|.+|.|+|||||.+|+.+++++|+++|+++|..+. -+.||||||+++
T Consensus        43 ~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   43 SSLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            3466789999999999999999988999999999999999999999999999999999999999985 589999999999


Q ss_pred             CCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 009183          104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD  183 (541)
Q Consensus       104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  183 (541)
                      |+..++++|+++|||++.+|.+|.+|+|.|++.|+...+.||+.+ +.++|.+|.+|+||||||+++|....++.|++.|
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~-~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSK-GADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHh-cccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998 7999999999999999999999988799999999


Q ss_pred             CCCCccc-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcc----ccc
Q 009183          184 ASQGRQD-KDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHR----NHW  258 (541)
Q Consensus       184 ~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~----~~~  258 (541)
                      +.+..+| .+|+||||+|+..|+..++++|++.|+  +.+..|.+|+||+++|.++   .++..+........    ..|
T Consensus       202 a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~--~~d~~~~~g~tp~~LA~~~---~~~~~~~h~~~~~~~~~~~K~  276 (600)
T KOG0509|consen  202 ASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGA--DLDKTNTNGKTPFDLAQER---KLVAALHHDVVERLGKVVKKW  276 (600)
T ss_pred             ccccccccccCCchHHHHHhcCCcceEehhhhcCC--cccccccCCCCHHHHHHHh---hhHHHhhccHHHhhcccccch
Confidence            9999998 779999999999999999996666666  6667888899999999888   22222211111000    000


Q ss_pred             ccccccccccCC---C-------CchhHHHHHHHHHHHHhc-----ee--------------eccCcccchhhhhhhHH-
Q 009183          259 GDKICGRKTSDI---G-------YAPILFSIIILCIILFIN-----SV--------------VAAPRLTKVTAVLGLWS-  308 (541)
Q Consensus       259 ~~~~~~~~~~~l---g-------~~~l~~~~i~~~~~~f~~-----~~--------------~~~~~~~~~~~~~~~~~-  308 (541)
                      ..+........+   +       ..|-.+.++.. ++++..     .+              ...+..........+|. 
T Consensus       277 ~~~~~~~~~~~f~~~~~~~~~~~~~~g~i~~~~~-~w~i~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~  355 (600)
T KOG0509|consen  277 FLGSKLAALIFFIFLGLFYFISSWLPGVIFLINS-LWLIKGLALGKLVLTCLCATRKIVGFLLRPPLLSGFFLSTLFWFY  355 (600)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh-HHHHhhhhhhhhhhheeccchhhccccccchhHHHHHHHHHHHHH
Confidence            000000000000   0       00000000000 000000     00              00000001111111111 


Q ss_pred             ----------------HHHHHHHHHHHHHHHHhhccCCCcccCCCCCCCCCCCCCccccccCCCCCCcCCccc-cccccc
Q 009183          309 ----------------WTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWS-QLCPTC  371 (541)
Q Consensus       309 ----------------~~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~C  371 (541)
                                      +.+++..+..+++|.++..+|||++|.......  +...++.+..       +.+.+ +||.+|
T Consensus       356 ~~w~~~i~~~~~~~~~~~~i~~~l~~~~~f~~~~rsDPg~i~~~~~~~~--~tIs~l~d~g-------kf~~en~FC~~c  426 (600)
T KOG0509|consen  356 YFWFSKITPYTLFDFHYCFIISVLAYFITFGLFLRSDPGFIPTSTEVGR--ETISQLIDFG-------KFDLENRFCLTC  426 (600)
T ss_pred             HhhheeccchhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCchhhHH--HHHHHhhccc-------cccccccceeee
Confidence                            122334555677788888899999998754321  1111222211       11223 699999


Q ss_pred             cccCCCCCcCCccchhhhhccCCcCceeeccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchhhhhc
Q 009183          372 KIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLV  451 (541)
Q Consensus       372 ~~~kp~Rs~HC~~C~~CV~~~DHHC~wi~nCIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (541)
                      .+.||.|||||++|||||.||||||||++||||.+|||+|+.|++.+...+.+.+....+++.......  ..|.     
T Consensus       427 lirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~~--~~~~-----  499 (600)
T KOG0509|consen  427 LIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENAS--TIYV-----  499 (600)
T ss_pred             eeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH--HHHH-----
Confidence            999999999999999999999999999999999999999999999988887777777666665443321  0010     


Q ss_pred             chhHHHHHHHHHHH-------------HHHHHHH-HHHHHHHhhccchhHHhhhhcccccccCCCCCcCCCCChhHHhHH
Q 009183          452 HPGLVLFLVLDTII-------------LIAGTTL-TSIQAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNC  517 (541)
Q Consensus       452 ~~~~~~~~~~~~~~-------------~~~~~~l-~~~~~~~i~~n~Tt~E~~~~~~~~~~~~~~~~~~n~f~~g~~~N~  517 (541)
                       .+++.+.++...-             ..+.... -+.|...++.++||+|.++..||+++.-+.+..++||+.|+.+|+
T Consensus       500 -~~l~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~~~~~~~~c~~~tt~e~~n~~r~~~~~~~~~~~~~~~s~g~~~Nl  578 (600)
T KOG0509|consen  500 -GFLIAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTKCQHYNCACLHLTTNEQINVKRYEHLGIKRGPTRSPFSPGPIRNL  578 (600)
T ss_pred             -HHHHHHHHHhCCccceeeeeeccccccccccccccccccceeeecccHHHHHHHHHhhccccccCcCCCCCCchhhhcc
Confidence             0111111111100             0011112 233445588899999999999999998888889999999999999


Q ss_pred             HHHhcC---CCCCCccccCCC
Q 009183          518 ADFFIH---GYTNDDELAWPP  535 (541)
Q Consensus       518 ~~~~~~---~~~~~~~~~~p~  535 (541)
                      .+||-.   +-..+...+|+.
T Consensus       579 ~df~~~~~~~~~~~~~~~~~~  599 (600)
T KOG0509|consen  579 VDFFLCSDCNLPLNDRFLWDN  599 (600)
T ss_pred             hheeecccCcCcchhhcccCC
Confidence            999932   334455556654

>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=2.4e-43  Score=321.21  Aligned_cols=238  Identities=28%  Similarity=0.435  Sum_probs=163.3

Q ss_pred             HHHHHHHHHhceeeccCcccchhhhhhhHH-HHHHHHHHHHHHHHHHhhccCCCcccCCCCCCCCCCCCCccccccCCCC
Q 009183          279 IIILCIILFINSVVAAPRLTKVTAVLGLWS-WTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNS  357 (541)
Q Consensus       279 ~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (541)
                      .++.....++++.+..|.    .+..++.. ..+.+...+.++.|+.+++++||++|..+.++...++            
T Consensus        25 t~i~~~~~~~n~lww~p~----ss~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~------------   88 (414)
T KOG1314|consen   25 TIITSTTGYMNSLWWFPL----SSFLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKDE------------   88 (414)
T ss_pred             HHHHHHHHHhhhhhhccc----cchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhH------------
Confidence            344445556655544332    12222222 2344556778899999999999999999976432211            


Q ss_pred             CCcCCccccccccccccCCCCCcCCccchhhhhccCCcCceeeccccCCchHHHHHHHHHHHHHHHHHHHHH-------H
Q 009183          358 PIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIA-------I  430 (541)
Q Consensus       358 ~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~wi~nCIG~~N~~~F~~fl~~~~~~~~~~~~~~-------~  430 (541)
                           ...+||..|+-+|+||||||+.|||||.+|||||||+|||||..||-||+.||++..+.|+...++.       +
T Consensus        89 -----~~lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~I  163 (414)
T KOG1314|consen   89 -----MFLQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGI  163 (414)
T ss_pred             -----HHHHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHH
Confidence                 1248999999999999999999999999999999999999999999999999999998665432221       2


Q ss_pred             HHHHhCCCCCCCCcchhh-hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhhh----hccc-ccccCCCCC
Q 009183          431 HRIWTAPHLPADGTWIHY-VLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELAN----SVRY-DYLRGPDGR  504 (541)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~----~~~~-~~~~~~~~~  504 (541)
                      +..|.........+...+ .......++.+.+++.+.+++++|++.|+..|++|+|.+|.+-    ..|- .|..+..++
T Consensus       164 y~~W~~~~g~~hlp~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~  243 (414)
T KOG1314|consen  164 YFRWYIKYGLRHLPIVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGE  243 (414)
T ss_pred             HHHHHhhcccccCceeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCc
Confidence            222211110000010000 0111223334445566677888999999999999999999886    2222 244444578


Q ss_pred             cCCCCChhHHhHHHHHh-cCCCCCCccccCCCCC
Q 009183          505 FRNPYNHGCQKNCADFF-IHGYTNDDELAWPPLQ  537 (541)
Q Consensus       505 ~~n~f~~g~~~N~~~~~-~~~~~~~~~~~~p~~~  537 (541)
                      +..|||.|+..|+++|| +.+..+.++..||...
T Consensus       244 f~ypydlgWr~n~r~vf~~~~~~~gdg~~wPv~~  277 (414)
T KOG1314|consen  244 FTYPYDLGWRINLREVFFQNKKEEGDGIEWPVVE  277 (414)
T ss_pred             eeeeccccccccHHHHhhhccccCCCCccccccC
Confidence            99999999777999999 4556778999999754

>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=8.9e-42  Score=319.11  Aligned_cols=218  Identities=25%  Similarity=0.314  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCcccCCCCCCCCCCCCCccccccCCCCCCc---CCccccccccccccCCCCCcCCccc
Q 009183          309 WTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIW---TGNWSQLCPTCKIIRPVRSKHCPAC  385 (541)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~C~~C~~~kp~Rs~HC~~C  385 (541)
                      ..+.++.++.+++|++++++|||.+|..+..+.+..+............+..   ..-..|+|.+|+.+||+|||||++|
T Consensus        50 l~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC  129 (307)
T KOG1315|consen   50 LLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSLENGSDNERDLPGYTRTSDGAVRYCDKCKCIKPDRAHHCSVC  129 (307)
T ss_pred             HHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccccccCcccccceeeEecCCCCceeecccccccCCccccchhh
Confidence            3455667788999999999999999988765443221110000000111111   1113599999999999999999999


Q ss_pred             hhhhhccCCcCceeeccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchhhhhcchhHHHHHHHHHHH
Q 009183          386 KCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLFLVLDTII  465 (541)
Q Consensus       386 ~~CV~~~DHHC~wi~nCIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (541)
                      +|||+||||||||+|||||.+|||+|++|++|.++++++..+..+..+.......    +.........+++.+++++.+
T Consensus       130 ~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~f  205 (307)
T KOG1315|consen  130 NRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYFQGG----AGPSSLLLFFIVFLFLVAIAF  205 (307)
T ss_pred             hhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999776665544443221100    000001122344556666677


Q ss_pred             HHHHHHHHHHHHHHhhccchhHHhhhhcccccccCCCCCcCCCCChhHHhHHHHHhcCCCCCCccccCCCCCcc
Q 009183          466 LIAGTTLTSIQAYQIARNITTNELANSVRYDYLRGPDGRFRNPYNHGCQKNCADFFIHGYTNDDELAWPPLQLA  539 (541)
Q Consensus       466 ~~~~~~l~~~~~~~i~~n~Tt~E~~~~~~~~~~~~~~~~~~n~f~~g~~~N~~~~~~~~~~~~~~~~~p~~~~~  539 (541)
                      ++.++.++++|+++|++|+||+|.++...+..    .+..+|.|+.  ..|+.|+|+.   ++..|+.|..-+.
T Consensus       206 ~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~~~----~~~~~~~~~~--~~n~~~vfg~---~~~~wl~P~~~s~  270 (307)
T KOG1315|consen  206 SISLSGLLCFHTYLILKNKTTIEAYKSPVFRS----GLHNKNGFNL--YVNFREVFGS---NLLYWLLPIDSSW  270 (307)
T ss_pred             HHHHHHHHHHHHHHHHcCchhHhhhccccccc----cccccCCcce--eecHHHHhCC---CceEEeccccCcc
Confidence            77777799999999999999999887653221    2234566776  7999999976   6778888876543

>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=100.00  E-value=1e-39  Score=317.16  Aligned_cols=163  Identities=31%  Similarity=0.468  Sum_probs=125.2

Q ss_pred             ccccccccccCCCCCcCCccchhhhhccCCcCceeeccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc
Q 009183          365 SQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGT  444 (541)
Q Consensus       365 ~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~wi~nCIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (541)
                      .++|.+|+.+||+|||||++||+||+||||||||+|||||++|||||+.|++++.+.+++.+++.+..+...........
T Consensus       113 ~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~  192 (299)
T KOG1311|consen  113 WKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADNLKVNL  192 (299)
T ss_pred             eEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            48999999999999999999999999999999999999999999999999999999888888877776654322111111


Q ss_pred             c-hhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccccCCCCCc-CCCCChhHHhHHHHHhc
Q 009183          445 W-IHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSVRYDYLRGPDGRF-RNPYNHGCQKNCADFFI  522 (541)
Q Consensus       445 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~~~~~~~~~~~~~~-~n~f~~g~~~N~~~~~~  522 (541)
                      + ..........+++.++++++.+.++.|+.+|+++|.+|+||+|.++.  +.      .+. .+|||+|.++|++++|+
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~--~~------~~~~~~~~~~g~~~n~~~~~~  264 (299)
T KOG1311|consen  193 TPVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKS--LD------FVSRSNPYDLGLLKNLQEVFG  264 (299)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhc--cc------cccccCCCchhHHHHHHHHhC
Confidence            1 01111122234445667777778889999999999999999998776  11      112 49999999999999996


Q ss_pred             CCCCCCccccCCCCC
Q 009183          523 HGYTNDDELAWPPLQ  537 (541)
Q Consensus       523 ~~~~~~~~~~~p~~~  537 (541)
                      .  +....|+.|...
T Consensus       265 ~--~~~~~~~~p~~~  277 (299)
T KOG1311|consen  265 G--PLPLSWLSPFAR  277 (299)
T ss_pred             C--CCCccccccccc
Confidence            4  445667777664

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=1e-39  Score=293.10  Aligned_cols=172  Identities=30%  Similarity=0.527  Sum_probs=123.9

Q ss_pred             HHHHHhhccCCCcccCCC-CCCCCCCCCCccccccCCCCCCcCCccccccccccccCCCCCcCCccchhhhhccCCcCce
Q 009183          320 IMFYRCSSKDPGYIKRSQ-DIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPW  398 (541)
Q Consensus       320 ~~~~~~~~~dPG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w  398 (541)
                      ++|+++.++|||++|+.. ..++.....+..........+.......++|.+|+++||+|||||+.||+||.||||||||
T Consensus         2 ~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w   81 (174)
T PF01529_consen    2 WSYFLTIFIDPGYVPRSNPDEDQRQEEKEEEQNQSIDSPEDDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPW   81 (174)
T ss_pred             EEehhhheECCcccCCccccccccccccccccchhhhhhccccCCCCEECcccCCcCCCcceeccccccccccccccchh
Confidence            457889999999999982 1111111111111111111122234456999999999999999999999999999999999


Q ss_pred             eeccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009183          399 ISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLFLVLDTIILIAGTTLTSIQAY  478 (541)
Q Consensus       399 i~nCIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  478 (541)
                      +|||||++|||+|++|+++.++.+++.....+..+...........+...  .....++.++++++++++++.++++|++
T Consensus        82 ~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~  159 (174)
T PF01529_consen   82 LGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIPSISFSSFWIF--SNFSSIFLLIISIFFFIFVGFLLIFQLY  159 (174)
T ss_pred             hccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888887777666554332222221111  0011255666777888899999999999


Q ss_pred             HhhccchhHHhhhhc
Q 009183          479 QIARNITTNELANSV  493 (541)
Q Consensus       479 ~i~~n~Tt~E~~~~~  493 (541)
                      +|++|+||+|.+|++
T Consensus       160 ~i~~n~Tt~E~~~~~  174 (174)
T PF01529_consen  160 LILRNITTYERIKRK  174 (174)
T ss_pred             HHHcCCcHHHHHHcC
Confidence            999999999998863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.4e-39  Score=265.85  Aligned_cols=208  Identities=29%  Similarity=0.402  Sum_probs=195.0

Q ss_pred             chhhHHHHHHcCCHHHHHHHHHhcCCCCccCCC-CCchHHHHHHHcCcHHHHHHHH-hCCCCCCCCCCCCchHHHHHHHh
Q 009183           26 AVTDVFSASAYGDFEKLRKFVEEDGASVSRPDG-NGYFALQWAALNNFADIAQYII-DHGGDVNATDNNGQTALHWAAVR  103 (541)
Q Consensus        26 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll-~~g~~~~~~~~~g~tpL~~A~~~  103 (541)
                      ..++.+.+++......+++++++.+..++.++. +|+|||||||..|+.+++++|+ +.+..+|.+|..|+||||+||..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            356778888999999999999988878888876 9999999999999999999999 56788899999999999999999


Q ss_pred             CCHHHHHHHHhC-CCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhc
Q 009183          104 GSIAVADVLVQN-GARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR  182 (541)
Q Consensus       104 g~~~~v~~Ll~~-g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  182 (541)
                      |+.++|+.|+.+ |+|++..++.|.|+||+|+..|..++++.|+++ |+.++.+|..|.||||-|+..|+.+++++|+..
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~-ga~i~~kD~~~qtplHRAAavGklkvie~Li~~  161 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK-GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ  161 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhc-CCCCcccccccCchhHHHHhccchhhHHHHHhc
Confidence            999999999998 999999999999999999999999999999988 899999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHh
Q 009183          183 DASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYD  237 (541)
Q Consensus       183 g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~  237 (541)
                      |+.+|.+|..|+||||.|...|+.++...|+++|+  +...+|++| ||+..|+.
T Consensus       162 ~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gA--d~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  162 GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGA--DTDREDKEG-TALRIACN  213 (226)
T ss_pred             CCCCCcccccCccHHHHHHhccCchHHHHHHHhcc--ceeeccccC-chHHHHHH
Confidence            99999999999999999999999999999999998  667789988 99888763

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-36  Score=289.78  Aligned_cols=230  Identities=17%  Similarity=0.156  Sum_probs=201.9

Q ss_pred             EEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCC
Q 009183            7 EVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV   86 (541)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~   86 (541)
                      ++.+.|.+.+.  ...+..|.||||.|+..|+.++++.|++. +++++..+  |.||||+|+..|+.+++++|+++|+++
T Consensus        13 ~~~~~Lis~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadv   87 (284)
T PHA02791         13 QLKSFLSSKDA--FKADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDD   87 (284)
T ss_pred             HHHHHHHhCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCC
Confidence            33444444333  35678899999999999999999988875 77887764  789999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCC-hHHHHHHHcCCHHHHHHHHHhcCCCcccCC-CCCCcHH
Q 009183           87 NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGY-RAVHVAAQYGQTSFLNHIVAKYHADYDASD-NEGRSPL  164 (541)
Q Consensus        87 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~-t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~L  164 (541)
                      +.++..|.||||+|+..|+.++++.|+++|++++.++..|. ||||+|+..|+.+++++|+++ +.+  ..| ..|.|||
T Consensus        88 n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~-~~~--~~d~~~g~TpL  164 (284)
T PHA02791         88 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPS--TFDLAILLSCI  164 (284)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc-CCc--ccccccCccHH
Confidence            99999999999999999999999999999999999998885 899999999999999999986 322  223 3589999


Q ss_pred             HHHHHhCcHHHHHHHHhcCCCCCcccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHH
Q 009183          165 HWAAYKGFADTIRLLLFRDASQGRQDKDGCTP-LHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV  243 (541)
Q Consensus       165 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tp-Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i  243 (541)
                      |+|+..|+.+++++|+++|++++.+|..|.|| ||+|+.+|+.+++++|+++|+  +++.+|.+| +++      ++.|+
T Consensus       165 h~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga--~in~~~~~~-~~l------~~~e~  235 (284)
T PHA02791        165 HITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDI--NIYSVNLEN-VLL------DDAEI  235 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCC--CCccCcccC-ccC------CCHHH
Confidence            99999999999999999999999999999987 999999999999999999998  778899865 555      78899


Q ss_pred             HHHHHHhhhh
Q 009183          244 ALYLSNAQHM  253 (541)
Q Consensus       244 ~~~L~~~~~~  253 (541)
                      +++|+++-..
T Consensus       236 ~~~ll~~~~~  245 (284)
T PHA02791        236 AKMIIEKHVE  245 (284)
T ss_pred             HHHHHHhhhh
Confidence            9999976544

>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=100.00  E-value=2.2e-37  Score=273.50  Aligned_cols=173  Identities=28%  Similarity=0.474  Sum_probs=127.5

Q ss_pred             cccccccccCCCCCcCCccchhhhhccCCcCceeeccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------
Q 009183          366 QLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPH-------  438 (541)
Q Consensus       366 ~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~wi~nCIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~-------  438 (541)
                      .+|.+|.-+||||+|||++|||||++|||||||+|||||..|||||++|++++++++.+..+...+.......       
T Consensus       103 SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~~~~ta  182 (309)
T KOG1313|consen  103 SFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPIEEITA  182 (309)
T ss_pred             cHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhccc
Confidence            7899999999999999999999999999999999999999999999999999999998876665543321111       


Q ss_pred             CCCC--Ccch--h-----hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhhhhccc--ccccCCCCCcCC
Q 009183          439 LPAD--GTWI--H-----YVLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSVRY--DYLRGPDGRFRN  507 (541)
Q Consensus       439 ~~~~--~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~~~~--~~~~~~~~~~~n  507 (541)
                      ..++  ..+-  .     ......-++...++++.+.++++.+..+|.++|.++.|.+|.....+-  .|+.   +...|
T Consensus       183 y~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a---~~R~~  259 (309)
T KOG1313|consen  183 YASDVAHVAPPPSILRVYKNITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLA---HLRSN  259 (309)
T ss_pred             ccCcccccCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHH---hccCC
Confidence            1011  0010  0     011222234456677777888899999999999999999998764321  1221   22379


Q ss_pred             CCChhHHhHHHHHhcC--CCCCCccccCCCCCccCC
Q 009183          508 PYNHGCQKNCADFFIH--GYTNDDELAWPPLQLAAG  541 (541)
Q Consensus       508 ~f~~g~~~N~~~~~~~--~~~~~~~~~~p~~~~~~~  541 (541)
                      |++.|..+||+.|++.  |++-+...+.|....|.|
T Consensus       260 ~~n~g~k~nWr~fLg~~~~r~~wk~v~lPt~~~p~~  295 (309)
T KOG1313|consen  260 PTNFGGKANWRNFLGLFRGRHFWKTVLLPTIRKPVK  295 (309)
T ss_pred             CcccchHHHHHHhhccccCCceeEEEeccccccccc
Confidence            9999999999999953  333344456798888875

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-36  Score=314.29  Aligned_cols=244  Identities=26%  Similarity=0.384  Sum_probs=139.9

Q ss_pred             ceEEeeccccCCCCCCCCCCcchhhHHH-----HHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHH--HcCcHHHHH
Q 009183            5 EIEVVSSTEAIPNENQNDNQAAVTDVFS-----ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAA--LNNFADIAQ   77 (541)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~~~~~~L~~-----A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~--~~~~~~iv~   77 (541)
                      +.++++.+.+.+.+....+..+.+||+.     |+..|+.++++.|++. |++++..|..|.||||+|+  ..|+.++++
T Consensus        47 ~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~  125 (480)
T PHA03100         47 NIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVNAPDNNGITPLLYAISKKSNSYSIVE  125 (480)
T ss_pred             CHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCCCCCCCCCCCchhhHHHhcccChHHHHH
Confidence            3444455554444444444555555555     5555555555555543 5555555555555555555  555555555


Q ss_pred             HHHhCCCCCCCCCCCCchHHHHHHHhC--CHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCccc
Q 009183           78 YIIDHGGDVNATDNNGQTALHWAAVRG--SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA  155 (541)
Q Consensus        78 ~Ll~~g~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~  155 (541)
                      +|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++.+|..|.||||.|+..|+.+++++|++. |++++.
T Consensus       126 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~  204 (480)
T PHA03100        126 YLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN-GADINA  204 (480)
T ss_pred             HHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHc-CCCccC
Confidence            555555555555555555555555555  55555555555555555555555555555555555555555544 555555


Q ss_pred             CCCCC------CcHHHHHHHhCc--HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCC
Q 009183          156 SDNEG------RSPLHWAAYKGF--ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA  227 (541)
Q Consensus       156 ~d~~g------~t~L~~A~~~~~--~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~  227 (541)
                      .+..|      .||||.|+..|+  .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..
T Consensus       205 ~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga--d~n~~d~~  282 (480)
T PHA03100        205 GDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA--NPNLVNKY  282 (480)
T ss_pred             CCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCccCCC
Confidence            55555      555555555555  555566665556555555556666666666666666666666555  44555555


Q ss_pred             CCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          228 GLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       228 g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      |.||+++|++.++.+++++|++.++
T Consensus       283 g~tpl~~A~~~~~~~iv~~Ll~~g~  307 (480)
T PHA03100        283 GDTPLHIAILNNNKEIFKLLLNNGP  307 (480)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCC
Confidence            6666666666666666666555544

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.8e-35  Score=303.64  Aligned_cols=261  Identities=26%  Similarity=0.308  Sum_probs=228.2

Q ss_pred             CCceEEeecccc-CCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHh
Q 009183            3 SSEIEVVSSTEA-IPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIID   81 (541)
Q Consensus         3 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~   81 (541)
                      +++++.++.+.+ .+......+..+.|||+.|++.|+.++++.|++. |++++..+..|.||||.|+..|+.+++++|++
T Consensus        11 ~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~   89 (434)
T PHA02874         11 SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHINTKIPHPLLTAIKIGAHDIIKLLID   89 (434)
T ss_pred             cCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            466677777664 3444556677889999999999999999998865 89999999999999999999999999999988


Q ss_pred             CCC-----------------------CCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC
Q 009183           82 HGG-----------------------DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ  138 (541)
Q Consensus        82 ~g~-----------------------~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~  138 (541)
                      +|+                       +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus        90 ~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~  169 (434)
T PHA02874         90 NGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNF  169 (434)
T ss_pred             CCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCc
Confidence            765                       456678889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183          139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK  218 (541)
Q Consensus       139 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  218 (541)
                      .+++++|++. |.+++..|..|.||||+|+..|+.+++++|++.|++++.++..|.||||.|+..+. +.+++|+ .|+ 
T Consensus       170 ~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~-  245 (434)
T PHA02874        170 FDIIKLLLEK-GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNA-  245 (434)
T ss_pred             HHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCC-
Confidence            9999999986 89999999999999999999999999999999999999999999999999999876 5666666 465 


Q ss_pred             CCCcccCCCCCCHHHHHHhcC-chHHHHHHHHhhhhcccccccccccccccCCCCchhHHHH
Q 009183          219 QELTAKDKAGLTPTQLAYDKG-HRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSI  279 (541)
Q Consensus       219 ~~~~~~d~~g~t~l~~A~~~~-~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~  279 (541)
                       +++.+|..|.||||+|++.+ +.+++++|++.+....          .....|.+|+..+.
T Consensus       246 -~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n----------~~d~~g~TpL~~A~  296 (434)
T PHA02874        246 -SINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADIS----------IKDNKGENPIDTAF  296 (434)
T ss_pred             -CCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCC----------CCCCCCCCHHHHHH
Confidence             67889999999999999875 7899999998876543          12345788887765

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-35  Score=309.41  Aligned_cols=258  Identities=25%  Similarity=0.384  Sum_probs=236.8

Q ss_pred             eeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHH-----HHHcCcHHHHHHHHhCC
Q 009183            9 VSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQW-----AALNNFADIAQYIIDHG   83 (541)
Q Consensus         9 ~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~-----A~~~~~~~iv~~Ll~~g   83 (541)
                      ++.+.+.+......+..+.+|||.|++.|+.+.++.|++. |++++..+..|.||||+     |+..++.+++++|+++|
T Consensus        18 ~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~-g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~g   96 (480)
T PHA03100         18 IKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDN-GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG   96 (480)
T ss_pred             HHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHc-CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCC
Confidence            3344444555566777899999999999999999999976 89999999999999999     99999999999999999


Q ss_pred             CCCCCCCCCCchHHHHHH--HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcC--CHHHHHHHHHhcCCCcccCCCC
Q 009183           84 GDVNATDNNGQTALHWAA--VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG--QTSFLNHIVAKYHADYDASDNE  159 (541)
Q Consensus        84 ~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~  159 (541)
                      ++++..+..|.||||+|+  ..|+.+++++|+++|++++.++..|.||||.|+..|  +.+++++|++. |++++.+|..
T Consensus        97 a~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~-g~din~~d~~  175 (480)
T PHA03100         97 ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK-GVDINAKNRY  175 (480)
T ss_pred             CCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC-CCCcccccCC
Confidence            999999999999999999  999999999999999999999999999999999999  99999999987 9999999999


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCC------CcHHHHHHHcCC--HHHHHHHHHcCCCCCCcccCCCCCCH
Q 009183          160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG------CTPLHWAALRGN--VEACTVLVHAGTKQELTAKDKAGLTP  231 (541)
Q Consensus       160 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g------~tpLh~A~~~g~--~~~v~~Ll~~g~~~~~~~~d~~g~t~  231 (541)
                      |.||||+|+..|+.+++++|+++|++++..+..|      .||||.|+..|+  .+++++|+++|+  +++.+|..|.||
T Consensus       176 g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~--din~~d~~g~Tp  253 (480)
T PHA03100        176 GYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV--PINIKDVYGFTP  253 (480)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC--CCCCCCCCCCCH
Confidence            9999999999999999999999999999999998      999999999999  999999999998  778899999999


Q ss_pred             HHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHHH
Q 009183          232 TQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSII  280 (541)
Q Consensus       232 l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i  280 (541)
                      ||+|+..|+.+++++|++.++...          .....|.+|+..++.
T Consensus       254 L~~A~~~~~~~iv~~Ll~~gad~n----------~~d~~g~tpl~~A~~  292 (480)
T PHA03100        254 LHYAVYNNNPEFVKYLLDLGANPN----------LVNKYGDTPLHIAIL  292 (480)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC----------ccCCCCCcHHHHHHH
Confidence            999999999999999999887443          234557888887764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2.4e-35  Score=291.76  Aligned_cols=335  Identities=26%  Similarity=0.281  Sum_probs=256.0

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccc-cCCChHHHHHHHcC
Q 009183           60 GYFALQWAALNNFADIAQYIIDH-GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD-VHGYRAVHVAAQYG  137 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~l~~A~~~g  137 (541)
                      -.+.++.|++.|.++-|+.|++. |.+++..|.+|.|+|||||.+++.+++++|+++|+++|..+ .-+.||||+|+++|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            34577899999999999999998 99999999999999999999999999999999999999998 77899999999999


Q ss_pred             CHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183          138 QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT  217 (541)
Q Consensus       138 ~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  217 (541)
                      +..++..|++. |++++.+|.+|.+|+|.|++.|+.-.+-||+.+|++++.+|.+|+||||+|+.+|....++.|++-|+
T Consensus       124 ~~~vv~lLlqh-GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a  202 (600)
T KOG0509|consen  124 HISVVDLLLQH-GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA  202 (600)
T ss_pred             cHHHHHHHHHc-CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc
Confidence            99999999976 99999999999999999999999999999999999999999999999999999999998999999998


Q ss_pred             CCCCcccC-CCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHHHHHHHHHHhceeec-cC
Q 009183          218 KQELTAKD-KAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCIILFINSVVA-AP  295 (541)
Q Consensus       218 ~~~~~~~d-~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i~~~~~~f~~~~~~-~~  295 (541)
                        .+..+| .+|.||||.|+..|+..++.+|++.+....          +....|.+|+..+--.-........... .+
T Consensus       203 --~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d----------~~~~~g~tp~~LA~~~~~~~~~~h~~~~~~~  270 (600)
T KOG0509|consen  203 --SLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLD----------KTNTNGKTPFDLAQERKLVAALHHDVVERLG  270 (600)
T ss_pred             --cccccccccCCchHHHHHhcCCcceEehhhhcCCccc----------ccccCCCCHHHHHHHhhhHHHhhccHHHhhc
Confidence              566677 899999999999999999996665544332          1222256666655322111100000000 00


Q ss_pred             -cccchhhhhhhHHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCCCCCCCCCccccccCCCCCCcCCcccccccccccc
Q 009183          296 -RLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKII  374 (541)
Q Consensus       296 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~  374 (541)
                       ....    ...+........+..+..++.++.-.||++--... .         ..+  .+.-..+......|.+|.+.
T Consensus       271 ~~~~K----~~~~~~~~~~~~f~~~~~~~~~~~~~~g~i~~~~~-~---------w~i--~~~~L~~~~~~~~~~~~~~~  334 (600)
T KOG0509|consen  271 KVVKK----WFLGSKLAALIFFIFLGLFYFISSWLPGVIFLINS-L---------WLI--KGLALGKLVLTCLCATRKIV  334 (600)
T ss_pred             ccccc----hhhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh-H---------HHH--hhhhhhhhhhheeccchhhc
Confidence             0000    01112111112222455566677889998875321 0         000  00111122334789999999


Q ss_pred             CCCCCcCCccchhhhhccCCcCceeeccccCCchHHHHHHHHHHHHHHHH
Q 009183          375 RPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYL  424 (541)
Q Consensus       375 kp~Rs~HC~~C~~CV~~~DHHC~wi~nCIG~~N~~~F~~fl~~~~~~~~~  424 (541)
                      .+.+-.+|..|-.|+..|++||+|+. ||+-.|-..|.++.+...+..++
T Consensus       335 ~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~~~~  383 (600)
T KOG0509|consen  335 GFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLAYFI  383 (600)
T ss_pred             cccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999 99999988776654443333333

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.5e-35  Score=305.35  Aligned_cols=263  Identities=25%  Similarity=0.275  Sum_probs=233.9

Q ss_pred             CceEEeeccccCCCCCCCCCCcchhhHHHHHHcC---CHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcC-cHHHHHHH
Q 009183            4 SEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYG---DFEKLRKFVEEDGASVSRPDGNGYFALQWAALNN-FADIAQYI   79 (541)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g---~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~iv~~L   79 (541)
                      ..+++++.+.+.+.+....+..|.||||.|+..|   +.++++.|++. |+++|.+|..|.||||+|+..| +.+++++|
T Consensus        25 ~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~~~~g~TpLh~A~~~~~~~~iv~lL  103 (471)
T PHA03095         25 VTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAPERCGFTPLHLYLYNATTLDVIKLL  103 (471)
T ss_pred             CCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHH
Confidence            4566778888888888888899999999999999   99999888865 9999999999999999999999 59999999


Q ss_pred             HhCCCCCCCCCCCCchHHHHHH--HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcC--CHHHHHHHHHhcCCCccc
Q 009183           80 IDHGGDVNATDNNGQTALHWAA--VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG--QTSFLNHIVAKYHADYDA  155 (541)
Q Consensus        80 l~~g~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g--~~~~v~~Ll~~~~~~~~~  155 (541)
                      +++|++++.++..|.||||+|+  ..++.+++++|+++|++++.+|..|.||||.|+..+  +.++++.|++. |.+++.
T Consensus       104 l~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~-g~~~~~  182 (471)
T PHA03095        104 IKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDA-GADVYA  182 (471)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCcc
Confidence            9999999999999999999999  556899999999999999999999999999998866  57899999976 888888


Q ss_pred             CCCCCCcHHHHHHHh--CcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCCCcccCCCCCCH
Q 009183          156 SDNEGRSPLHWAAYK--GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV--EACTVLVHAGTKQELTAKDKAGLTP  231 (541)
Q Consensus       156 ~d~~g~t~L~~A~~~--~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~--~~v~~Ll~~g~~~~~~~~d~~g~t~  231 (541)
                      .|..|.||||+|+..  ++.++++.|+++|++++.+|..|.||||+|+..|+.  .+++.|++.|+  +++.+|..|.||
T Consensus       183 ~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~--din~~d~~g~Tp  260 (471)
T PHA03095        183 VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI--SINARNRYGQTP  260 (471)
T ss_pred             cCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCC--CCCCcCCCCCCH
Confidence            899999999999875  678999999999999999999999999999999875  57888999997  788899999999


Q ss_pred             HHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHHH
Q 009183          232 TQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSII  280 (541)
Q Consensus       232 l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i  280 (541)
                      ||+|+..|+.+++++|++.++...          .....|.+|+..++.
T Consensus       261 Lh~A~~~~~~~~v~~LL~~gad~n----------~~~~~g~tpl~~A~~  299 (471)
T PHA03095        261 LHYAAVFNNPRACRRLIALGADIN----------AVSSDGNTPLSLMVR  299 (471)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCc----------ccCCCCCCHHHHHHH
Confidence            999999999999999998876543          234457888887764

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.9e-35  Score=299.00  Aligned_cols=226  Identities=20%  Similarity=0.304  Sum_probs=211.5

Q ss_pred             chhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCC
Q 009183           26 AVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGS  105 (541)
Q Consensus        26 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~  105 (541)
                      .+++|+.|++.|+.+.++.|++. |++++.++.+|.||||+|+..|+.+++++|+++|++++..+.++.||||.|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI-GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence            45789999999999999999975 99999999999999999999999999999999999999998899999999999999


Q ss_pred             HHHHHHHHhCCCCCC-ccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCC
Q 009183          106 IAVADVLVQNGARVE-AADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA  184 (541)
Q Consensus       106 ~~~v~~Ll~~g~~~~-~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~  184 (541)
                      .++++.|++.|++.+ ..+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~  159 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA  159 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            999999999998764 4567899999999999999999999987 99999999999999999999999999999999999


Q ss_pred             CCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCC-CCHHHHHHhcCchHHHHHHHHhhhhcc
Q 009183          185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAG-LTPTQLAYDKGHRQVALYLSNAQHMHR  255 (541)
Q Consensus       185 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g-~t~l~~A~~~~~~~i~~~L~~~~~~~~  255 (541)
                      +++.+|..|.||||+|+..|+.+++++|+++|+  +++..+..| .||+++|++.|+.+++++|++++....
T Consensus       160 ~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga--~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        160 CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA--NIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN  229 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC--CCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence            999999999999999999999999999999998  666777776 488999999999999999999887654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-34  Score=299.52  Aligned_cols=245  Identities=22%  Similarity=0.315  Sum_probs=222.6

Q ss_pred             CCceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHh----------------------cCCCCccCCCCC
Q 009183            3 SSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEE----------------------DGASVSRPDGNG   60 (541)
Q Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~----------------------~~~~~~~~d~~g   60 (541)
                      +++.++++.|.+.+.+....+..+.+||+.|+..|+.++++.|++.                      .|++++.+|..|
T Consensus        45 ~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g  124 (434)
T PHA02874         45 SGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAEL  124 (434)
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCC
Confidence            4677788888888888778888899999999999999999988864                      345678889999


Q ss_pred             chHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHH
Q 009183           61 YFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS  140 (541)
Q Consensus        61 ~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~  140 (541)
                      .||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+.+
T Consensus       125 ~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~  204 (434)
T PHA02874        125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYA  204 (434)
T ss_pred             ccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcC-CHHHHHHHHHcCCCC
Q 009183          141 FLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRG-NVEACTVLVHAGTKQ  219 (541)
Q Consensus       141 ~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g-~~~~v~~Ll~~g~~~  219 (541)
                      ++++|++. +.+++.++..|.||||.|+..+. +.+++|+ .|++++.+|..|.||||+|+..+ +.+++++|+++|+  
T Consensus       205 iv~~Ll~~-g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~ga--  279 (434)
T PHA02874        205 CIKLLIDH-GNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKA--  279 (434)
T ss_pred             HHHHHHhC-CCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcC--
Confidence            99999976 89999999999999999998875 5666666 68999999999999999999875 8899999999998  


Q ss_pred             CCcccCCCCCCHHHHHHhcC-chHHHHHHHHhhh
Q 009183          220 ELTAKDKAGLTPTQLAYDKG-HRQVALYLSNAQH  252 (541)
Q Consensus       220 ~~~~~d~~g~t~l~~A~~~~-~~~i~~~L~~~~~  252 (541)
                      +++.+|..|.||+++|++.+ +.++++.|.....
T Consensus       280 d~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~  313 (434)
T PHA02874        280 DISIKDNKGENPIDTAFKYINKDPVIKDIIANAV  313 (434)
T ss_pred             CCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcC
Confidence            78889999999999999987 6677888876554

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.6e-35  Score=298.52  Aligned_cols=243  Identities=18%  Similarity=0.197  Sum_probs=207.0

Q ss_pred             ceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcC--cHHHHHHHHhC
Q 009183            5 EIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNN--FADIAQYIIDH   82 (541)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~--~~~iv~~Ll~~   82 (541)
                      +.++++.+.+.+.+.+..+..|.||||.|++.|+.++++.|++. |+++|.+|.+|.||||+|+..+  ..+++++|+++
T Consensus        51 ~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~  129 (446)
T PHA02946         51 DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTH-GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQY  129 (446)
T ss_pred             CHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            34566777777777888888999999999999999999888874 8999999999999999998765  48899999999


Q ss_pred             CCCCCC-CCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC--HHHHHHHHHhcCCCcccCCCC
Q 009183           83 GGDVNA-TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ--TSFLNHIVAKYHADYDASDNE  159 (541)
Q Consensus        83 g~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~--~~~v~~Ll~~~~~~~~~~d~~  159 (541)
                      |++++. .+.+|.|||| |+..|+.++++.|++.|++++.+|..|.||||.|+..++  .+++++|++. |++++.+|.+
T Consensus       130 Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~-Gadin~~d~~  207 (446)
T PHA02946        130 GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKL-GISPSKPDHD  207 (446)
T ss_pred             CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHc-CCCCcccCCC
Confidence            999985 5788999997 666789999999999999999999999999999887554  5888888876 9999999999


Q ss_pred             CCcHHHHHHHhC--cHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCC----------------
Q 009183          160 GRSPLHWAAYKG--FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGN-VEACTVLVHAGTKQE----------------  220 (541)
Q Consensus       160 g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~g~~~~----------------  220 (541)
                      |.||||+|+..+  +.+++++|+. |++++.+|..|.||||+|+..++ .++++.|+++|+..+                
T Consensus       208 G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~  286 (446)
T PHA02946        208 GNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVL  286 (446)
T ss_pred             CCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHH
Confidence            999999999886  7889998885 89999999999999999999988 588999998876310                


Q ss_pred             --CcccC-CCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183          221 --LTAKD-KAGLTPTQLAYDKGHRQVALYLSNAQ  251 (541)
Q Consensus       221 --~~~~d-~~g~t~l~~A~~~~~~~i~~~L~~~~  251 (541)
                        +..++ ..|+||||+|+++|+.+++++|++++
T Consensus       287 e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~  320 (446)
T PHA02946        287 EIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND  320 (446)
T ss_pred             HHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC
Confidence              11222 35779999999999999999999764

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=303.32  Aligned_cols=246  Identities=22%  Similarity=0.265  Sum_probs=225.7

Q ss_pred             ceEEeeccccCCCCCCCCCCcchhhHHHHHHcCC-HHHHHHHHHhcCCCCccCCCCCchHHHHHH--HcCcHHHHHHHHh
Q 009183            5 EIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGD-FEKLRKFVEEDGASVSRPDGNGYFALQWAA--LNNFADIAQYIID   81 (541)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~-~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~--~~~~~~iv~~Ll~   81 (541)
                      ..++++.+.+.+.+.+..+..|.||||.|+..|+ .++++.|++ .|++++.+|..|.||||+|+  ..++.+++++|++
T Consensus        62 ~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~-~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~  140 (471)
T PHA03095         62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIK-AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR  140 (471)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHH
Confidence            6677788888888888888899999999999995 777777665 59999999999999999999  5568999999999


Q ss_pred             CCCCCCCCCCCCchHHHHHHHhC--CHHHHHHHHhCCCCCCccccCCChHHHHHHHc--CCHHHHHHHHHhcCCCcccCC
Q 009183           82 HGGDVNATDNNGQTALHWAAVRG--SIAVADVLVQNGARVEAADVHGYRAVHVAAQY--GQTSFLNHIVAKYHADYDASD  157 (541)
Q Consensus        82 ~g~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~--g~~~~v~~Ll~~~~~~~~~~d  157 (541)
                      +|++++..+..|.||||+|+..+  +.+++++|+++|++++..|..|.||||+|+..  ++.++++.|++. |++++.+|
T Consensus       141 ~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~-g~~~~~~d  219 (471)
T PHA03095        141 KGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATD  219 (471)
T ss_pred             cCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHc-CCCCcccC
Confidence            99999999999999999998866  68999999999999999999999999999975  677889999876 99999999


Q ss_pred             CCCCcHHHHHHHhCcH--HHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHH
Q 009183          158 NEGRSPLHWAAYKGFA--DTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA  235 (541)
Q Consensus       158 ~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A  235 (541)
                      ..|.||||+|+..|+.  .+++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.||+++|
T Consensus       220 ~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~ga--d~n~~~~~g~tpl~~A  297 (471)
T PHA03095        220 MLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGA--DINAVSSDGNTPLSLM  297 (471)
T ss_pred             CCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHHHHH
Confidence            9999999999999874  68889999999999999999999999999999999999999998  7888999999999999


Q ss_pred             HhcCchHHHHHHHHhhhhc
Q 009183          236 YDKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       236 ~~~~~~~i~~~L~~~~~~~  254 (541)
                      +++|+.++++.|++.++..
T Consensus       298 ~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        298 VRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             HHhCCHHHHHHHHHhCCCH
Confidence            9999999999999877544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=6.9e-35  Score=306.81  Aligned_cols=245  Identities=18%  Similarity=0.206  Sum_probs=166.1

Q ss_pred             ceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCH--HHHHHHHHhcCCCCccCCCCCchHHHHH---------------
Q 009183            5 EIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDF--EKLRKFVEEDGASVSRPDGNGYFALQWA---------------   67 (541)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~--~~v~~ll~~~~~~~~~~d~~g~t~Lh~A---------------   67 (541)
                      +.++++.|.+.+.+.+..+..|.||||.|++.|+.  ++++.|++ .|+++|.+|..|.||||.|               
T Consensus       191 ~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe-~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiL  269 (764)
T PHA02716        191 DIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIE-LGGDMDMKCVNGMSPIMTYIINIDNINPEITNIY  269 (764)
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHH
Confidence            34566666666666666777777777777777743  66666664 3777777777777777754               


Q ss_pred             ----------------------HHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHH--hCCHHHHHHHHhCCCCCCccc
Q 009183           68 ----------------------ALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAV--RGSIAVADVLVQNGARVEAAD  123 (541)
Q Consensus        68 ----------------------~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~g~~~~~~d  123 (541)
                                            +..|+.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++.+|
T Consensus       270 ie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD  349 (764)
T PHA02716        270 IESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD  349 (764)
T ss_pred             HHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCC
Confidence                                  33466677777777777777777777777777653  346777777777777777777


Q ss_pred             cCCChHHHHHHH--------------cCCHHHHHHHHHhcCCCcccCCCCCCcHHHHH----HHhCcHHHHHHHHhcCC-
Q 009183          124 VHGYRAVHVAAQ--------------YGQTSFLNHIVAKYHADYDASDNEGRSPLHWA----AYKGFADTIRLLLFRDA-  184 (541)
Q Consensus       124 ~~g~t~l~~A~~--------------~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A----~~~~~~~~v~~Ll~~g~-  184 (541)
                      ..|.||||.|+.              .++.+++++|++. |++++.+|..|.||||.+    ...+..+++++|++.|+ 
T Consensus       350 ~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~-GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~  428 (764)
T PHA02716        350 NIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL-GADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVL  428 (764)
T ss_pred             CCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC-CCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcch
Confidence            777777777654              2566777777765 777777777777777732    12345566666655432 


Q ss_pred             ------------------------------------------------------------CCCcccCCCCcHHHHHHHcC
Q 009183          185 ------------------------------------------------------------SQGRQDKDGCTPLHWAALRG  204 (541)
Q Consensus       185 ------------------------------------------------------------~~~~~d~~g~tpLh~A~~~g  204 (541)
                                                                                  +++.+|..|.||||+|+..|
T Consensus       429 ~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g  508 (764)
T PHA02716        429 NMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISH  508 (764)
T ss_pred             hhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcC
Confidence                                                                        12334556778888887777


Q ss_pred             CH-----HHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCch-----HHHHHHHHhhhh
Q 009183          205 NV-----EACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHR-----QVALYLSNAQHM  253 (541)
Q Consensus       205 ~~-----~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~-----~i~~~L~~~~~~  253 (541)
                      +.     +++++|++.|+  +++.+|++|+|||++|+++|+.     ++++.|+++++.
T Consensus       509 ~~~~v~~e~~k~LL~~GA--DIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~  565 (764)
T PHA02716        509 TNANIVMDSFVYLLSIQY--NINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPN  565 (764)
T ss_pred             CccchhHHHHHHHHhCCC--CCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCC
Confidence            65     34477887777  5667777888888888877765     777777776654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.8e-34  Score=303.74  Aligned_cols=265  Identities=18%  Similarity=0.184  Sum_probs=222.5

Q ss_pred             CceEEeeccccCC-CCCCCC-CCcchhhHHHHHH--cCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCc--HHHHH
Q 009183            4 SEIEVVSSTEAIP-NENQND-NQAAVTDVFSASA--YGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNF--ADIAQ   77 (541)
Q Consensus         4 ~~~~~~~~l~~~~-~~~~~~-~~~~~~~L~~A~~--~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~--~~iv~   77 (541)
                      .+.++++.|.+.+ .+.+.. +..|.+|||.|+.  .++.++++.|++. |+++|.+|.+|.||||+|+..|+  .++|+
T Consensus       153 v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~kD~~G~TPLH~Aa~~g~~~~eIVk  231 (764)
T PHA02716        153 IDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQNNHLITPLHTYLITGNVCASVIK  231 (764)
T ss_pred             CCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCHHHHH
Confidence            5567777777776 565655 7889999998865  4678999888865 99999999999999999999995  59999


Q ss_pred             HHHhCCCCCCCCCCCCchHHHHH-------------------------------------HHhCCHHHHHHHHhCCCCCC
Q 009183           78 YIIDHGGDVNATDNNGQTALHWA-------------------------------------AVRGSIAVADVLVQNGARVE  120 (541)
Q Consensus        78 ~Ll~~g~~~~~~~~~g~tpL~~A-------------------------------------~~~g~~~~v~~Ll~~g~~~~  120 (541)
                      +|+++|++++.++..|.||||.|                                     +..|+.++++.|+++|++++
T Consensus       232 lLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN  311 (764)
T PHA02716        232 KIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLH  311 (764)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee
Confidence            99999999999999999999975                                     44578899999999999999


Q ss_pred             ccccCCChHHHHHHH--cCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHH--------------hCcHHHHHHHHhcCC
Q 009183          121 AADVHGYRAVHVAAQ--YGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY--------------KGFADTIRLLLFRDA  184 (541)
Q Consensus       121 ~~d~~g~t~l~~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~--------------~~~~~~v~~Ll~~g~  184 (541)
                      .+|..|.||||+|+.  .++.+++++|++. |++++.+|..|.||||+|+.              .++.+++++|+++|+
T Consensus       312 ~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~-GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA  390 (764)
T PHA02716        312 YKDSAGRTCLHQYILRHNISTDIIKLLHEY-GNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA  390 (764)
T ss_pred             ccCCCCCCHHHHHHHHhCCCchHHHHHHHc-CCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC
Confidence            999999999999864  4678999999976 99999999999999999875              367899999999999


Q ss_pred             CCCcccCCCCcHHHH----HHHcCCHHHHHHHHHcCCCC-----------------------------------------
Q 009183          185 SQGRQDKDGCTPLHW----AALRGNVEACTVLVHAGTKQ-----------------------------------------  219 (541)
Q Consensus       185 ~~~~~d~~g~tpLh~----A~~~g~~~~v~~Ll~~g~~~-----------------------------------------  219 (541)
                      +++.+|..|.||||.    |...++.+++++|++.|+..                                         
T Consensus       391 DIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~  470 (764)
T PHA02716        391 DITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEP  470 (764)
T ss_pred             CCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhh
Confidence            999999999999994    23357789999988865310                                         


Q ss_pred             ------------------CCcccCCCCCCHHHHHHhcCchHH-----HHHHHHhhhhcccccccccccccccCCCCchhH
Q 009183          220 ------------------ELTAKDKAGLTPTQLAYDKGHRQV-----ALYLSNAQHMHRNHWGDKICGRKTSDIGYAPIL  276 (541)
Q Consensus       220 ------------------~~~~~d~~g~t~l~~A~~~~~~~i-----~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~  276 (541)
                                        +.+.+|..|.||||+|+..|+.++     +++|++.+....          .....|.+|+.
T Consensus       471 ~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN----------~~d~~G~TPLh  540 (764)
T PHA02716        471 YDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNIN----------IPTKNGVTPLM  540 (764)
T ss_pred             ccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCc----------ccCCCCCCHHH
Confidence                              123457789999999999988754     599998877554          24567899999


Q ss_pred             HHHH
Q 009183          277 FSII  280 (541)
Q Consensus       277 ~~~i  280 (541)
                      ++..
T Consensus       541 ~A~~  544 (764)
T PHA02716        541 LTMR  544 (764)
T ss_pred             HHHH
Confidence            8885

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-34  Score=300.68  Aligned_cols=210  Identities=22%  Similarity=0.296  Sum_probs=130.2

Q ss_pred             CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHH---------------------
Q 009183           22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYII---------------------   80 (541)
Q Consensus        22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll---------------------   80 (541)
                      .+..+.+|||.||+.|+.+.++.|++. |+++|.+|.+|.||||+||..|+.++++.|+                     
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~  111 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTR-GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNN  111 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHc
Confidence            455678999999999999999999975 8999999999999999999887665555444                     


Q ss_pred             -------------------------------------------hCCCCCCCCCCC-CchHHHHHHHhCCHHHHHHHHhCC
Q 009183           81 -------------------------------------------DHGGDVNATDNN-GQTALHWAAVRGSIAVADVLVQNG  116 (541)
Q Consensus        81 -------------------------------------------~~g~~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~g  116 (541)
                                                                 ++|++++..+.. |.||||+|+..|+.+++++|+++|
T Consensus       112 ~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g  191 (477)
T PHA02878        112 RNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYG  191 (477)
T ss_pred             CCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCC
Confidence                                                       445555555544 555555555555555555555555


Q ss_pred             CCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHh-CcHHHHHHHHhcCCCCCcccC-CCC
Q 009183          117 ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK-GFADTIRLLLFRDASQGRQDK-DGC  194 (541)
Q Consensus       117 ~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~d~-~g~  194 (541)
                      ++++.+|..|.||||.|+..|+.++++.|++. |++++.+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.
T Consensus       192 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~  270 (477)
T PHA02878        192 ANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN-GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGL  270 (477)
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence            55555555555555555555555555555543 555555555555555555543 345555555555555555443 355


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHh
Q 009183          195 TPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYD  237 (541)
Q Consensus       195 tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~  237 (541)
                      ||||+|  .++.+++++|+++|+  +++.+|..|.|||++|++
T Consensus       271 TpLh~A--~~~~~~v~~Ll~~ga--din~~d~~g~TpL~~A~~  309 (477)
T PHA02878        271 TALHSS--IKSERKLKLLLEYGA--DINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CHHHHH--ccCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHH
Confidence            555555  234455555555554  444455555555555554

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-35  Score=247.81  Aligned_cols=189  Identities=31%  Similarity=0.478  Sum_probs=176.7

Q ss_pred             cccCCC-CCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC-CCCCCCC
Q 009183           12 TEAIPN-ENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH-GGDVNAT   89 (541)
Q Consensus        12 l~~~~~-~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~   89 (541)
                      ..+.++ .+-..++++.+|||.|+..|+.+++..|+++.+..+|.+|..|+||||.||..|+.++|+.|+.+ |+++|..
T Consensus        23 ~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~  102 (226)
T KOG4412|consen   23 IQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNAT  102 (226)
T ss_pred             HhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCccee
Confidence            344553 34445669999999999999999999999988899999999999999999999999999999988 9999999


Q ss_pred             CCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHH
Q 009183           90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY  169 (541)
Q Consensus        90 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~  169 (541)
                      +..|.|+||+|+..|..+++++|+++|+.++.+|..|.||||-|+.-|+.+++++|+.. ++.+|.+|..|.||||.|..
T Consensus       103 tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~-~a~~n~qDk~G~TpL~~al~  181 (226)
T KOG4412|consen  103 TNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ-GAPLNTQDKYGFTPLHHALA  181 (226)
T ss_pred             cCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhc-CCCCCcccccCccHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999987 89999999999999999988


Q ss_pred             hCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHH
Q 009183          170 KGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL  202 (541)
Q Consensus       170 ~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~  202 (541)
                      .|+.++..+|+++|++.+..|++| ||+..|+.
T Consensus       182 e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  182 EGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             ccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            999999999999999999999998 99887764

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.6e-34  Score=271.25  Aligned_cols=210  Identities=18%  Similarity=0.143  Sum_probs=188.6

Q ss_pred             cCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q 009183           36 YGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN  115 (541)
Q Consensus        36 ~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  115 (541)
                      .++.+.++.|++ .+.  +.+|.+|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.++++.|++.
T Consensus         9 ~~~~~~~~~Lis-~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSS-KDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHh-CCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHC
Confidence            356677766665 455  5679999999999999999999999999999988764  68999999999999999999999


Q ss_pred             CCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCC-CcHHHHHHHhCcHHHHHHHHhcCCCCCccc-CCC
Q 009183          116 GARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEG-RSPLHWAAYKGFADTIRLLLFRDASQGRQD-KDG  193 (541)
Q Consensus       116 g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g  193 (541)
                      |++++.+|..|.||||+|+..|+.++++.|++. +++++.++..| .||||+|+..|+.+++++|++++.+.  .| ..|
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~-gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g  160 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAIL  160 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccC
Confidence            999999999999999999999999999999976 89999999888 48999999999999999999987543  23 248


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCH-HHHHHhcCchHHHHHHHHhhhhcc
Q 009183          194 CTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTP-TQLAYDKGHRQVALYLSNAQHMHR  255 (541)
Q Consensus       194 ~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~-l~~A~~~~~~~i~~~L~~~~~~~~  255 (541)
                      .||||+|+..|+.+++++|+++|+  +++.+|..|.|| |++|++.|+.+++++|++++....
T Consensus       161 ~TpLh~Aa~~g~~eiv~lLL~~gA--d~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in  221 (284)
T PHA02791        161 LSCIHITIKNGHVDMMILLLDYMT--STNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIY  221 (284)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHCCC--CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc
Confidence            999999999999999999999998  677889999987 999999999999999999887653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-34  Score=290.01  Aligned_cols=268  Identities=24%  Similarity=0.350  Sum_probs=241.0

Q ss_pred             ceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCC
Q 009183            5 EIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGG   84 (541)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~   84 (541)
                      ..+.++.+.+.+.+..-.+..+.+|+|.|+.+|+.+.++.|++. ++|+|..|+.|.||||.||..++.|..+.|++.|+
T Consensus       100 ~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~-~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a  178 (929)
T KOG0510|consen  100 QGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDY-GADVNLEDENGFTPLHLAARKNKVEAKKELINKGA  178 (929)
T ss_pred             hHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHh-cCCccccccCCCchhhHHHhcChHHHHHHHHhcCC
Confidence            44667788888889899999999999999999999999988876 69999999999999999999999998899999999


Q ss_pred             CCCCCCCCCchHHHHHHHhCCHHHHHHHHh-----CCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCC--------
Q 009183           85 DVNATDNNGQTALHWAAVRGSIAVADVLVQ-----NGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHA--------  151 (541)
Q Consensus        85 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~-----~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~--------  151 (541)
                      ++-..|.+|.+|+|.|+++|..++++..+.     ++..++.-+.+|.+|||.|++.|+.++++..++....        
T Consensus       179 ~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~  258 (929)
T KOG0510|consen  179 DPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDA  258 (929)
T ss_pred             CCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHH
Confidence            999999999999999999999999999998     7788999999999999999999999999999875221        


Q ss_pred             ------CcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCccc
Q 009183          152 ------DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVH-AGTKQELTAK  224 (541)
Q Consensus       152 ------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~  224 (541)
                            -++..|.+|.||||+||++|+.++++.|+..|++++.++.++.||||.||+.|+.++|+.|++ .|. ..++..
T Consensus       259 ~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~-rllne~  337 (929)
T KOG0510|consen  259 MQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDT-RLLNES  337 (929)
T ss_pred             HHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCc-cccccc
Confidence                  144568999999999999999999999999999999999999999999999999999999999 443 688899


Q ss_pred             CCCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHHHH
Q 009183          225 DKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIII  281 (541)
Q Consensus       225 d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i~  281 (541)
                      |..|.||||+|++.||..+++.|++.++...+.-       ..++.|.++++++...
T Consensus       338 D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~-------e~D~dg~TaLH~Aa~~  387 (929)
T KOG0510|consen  338 DLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMS-------EADSDGNTALHLAAKY  387 (929)
T ss_pred             cccCCCchhhhhhcCHHHHHHHHHhcChhhhccc-------ccccCCchhhhHHHHh
Confidence            9999999999999999999999999988655310       2366788888887753

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=276.93  Aligned_cols=200  Identities=28%  Similarity=0.443  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCcccCCCCCCCCCCCCCccccccCCCCCCcCCccccccccccccCCCCCcCCccchhhh
Q 009183          310 TVVSLAVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCV  389 (541)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV  389 (541)
                      .+++...+..+.+++...+|||+.+++....+.++..++.......       ...++|.+|+.+||+|||||+.|||||
T Consensus        61 ~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~C~~C~~~KP~RS~HC~~Cn~CV  133 (309)
T COG5273          61 LFIVILVLASFSYLLLLVSDPGYLGENITLSGYRETISRLLDDGKF-------GTENFCSTCNIYKPPRSHHCSICNRCV  133 (309)
T ss_pred             hhhhhhhhHHHhhHHHhhcCCCccCccccccchhhhhhhhhhcCcc-------ccceeccccccccCCCCccchhhcchh
Confidence            3444455677888999999999998765443333333333333222       235899999999999999999999999


Q ss_pred             hccCCcCceeeccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchhhhhcchhHHHH--HHHHHHHHH
Q 009183          390 EQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHLPADGTWIHYVLVHPGLVLF--LVLDTIILI  467 (541)
Q Consensus       390 ~~~DHHC~wi~nCIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  467 (541)
                      +||||||||+|||||.+|||+|++|+++.....++.+....+.+......+.+....      ...+++  ..+.+.+++
T Consensus       134 ~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~li~~~~~~~~~~f~  207 (309)
T COG5273         134 LKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLA------ICFLIFGCSLLGVVFFI  207 (309)
T ss_pred             hccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHH------HHHHHHhhhHHHHHHHH
Confidence            999999999999999999999999999998887777766666554443222111100      111222  234444566


Q ss_pred             HHHHHHHHHHHHhhccchhHHhhhhcccccc-------cCCC---------CCcCCCCChhHHhHHHHHhc
Q 009183          468 AGTTLTSIQAYQIARNITTNELANSVRYDYL-------RGPD---------GRFRNPYNHGCQKNCADFFI  522 (541)
Q Consensus       468 ~~~~l~~~~~~~i~~n~Tt~E~~~~~~~~~~-------~~~~---------~~~~n~f~~g~~~N~~~~~~  522 (541)
                      .+..++.++.+.+..|+||+|.....|....       +..+         .+...|++.|.-+|+..+++
T Consensus       208 ~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~  278 (309)
T COG5273         208 ITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRESNLPFTNIFDSSEGALPLDLGIGQNLSTIKG  278 (309)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccCCcCceeccCCCccccccccCccccceeecC
Confidence            6777888999999999999998876554321       1110         11335677777777777764

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.6e-33  Score=286.71  Aligned_cols=221  Identities=23%  Similarity=0.295  Sum_probs=198.4

Q ss_pred             chhhHHHHH--HcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh
Q 009183           26 AVTDVFSAS--AYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR  103 (541)
Q Consensus        26 ~~~~L~~A~--~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~  103 (541)
                      ..++||.++  ..++.++++.|++. |+++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~  115 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHR-GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGT  115 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHC-cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            357788765  44577888888865 999999999999999999999999999999999999999999999999999886


Q ss_pred             C--CHHHHHHHHhCCCCCCc-cccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc--HHHHHH
Q 009183          104 G--SIAVADVLVQNGARVEA-ADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF--ADTIRL  178 (541)
Q Consensus       104 g--~~~~v~~Ll~~g~~~~~-~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~--~~~v~~  178 (541)
                      +  ..+++++|+++|++++. .|..|.|||| |+..++.++++.|++. |++++.+|..|.||||.|+..++  .+++++
T Consensus       116 ~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~-gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~  193 (446)
T PHA02946        116 DDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSI-GFEARIVDKFGKNHIHRHLMSDNPKASTISW  193 (446)
T ss_pred             CCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhc-cccccccCCCCCCHHHHHHHhcCCCHHHHHH
Confidence            6  48999999999999995 6899999997 6677999999999976 99999999999999999987654  689999


Q ss_pred             HHhcCCCCCcccCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCc-hHHHHHHHHhhh
Q 009183          179 LLFRDASQGRQDKDGCTPLHWAALRG--NVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGH-RQVALYLSNAQH  252 (541)
Q Consensus       179 Ll~~g~~~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~-~~i~~~L~~~~~  252 (541)
                      |+++|++++.+|.+|.||||+|+..+  +.+++++|++ |+  +++.+|..|.|||++|++.++ .+++++|++.+.
T Consensus       194 Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-ga--din~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        194 MMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST--DVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CC--CCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence            99999999999999999999999986  8899999985 76  788999999999999999988 488999988764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-33  Score=304.28  Aligned_cols=264  Identities=22%  Similarity=0.234  Sum_probs=166.2

Q ss_pred             CCceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHH--------
Q 009183            3 SSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFAD--------   74 (541)
Q Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~--------   74 (541)
                      .++.++.+.|.+.+.+.+..+..|.||||.||+.|+.++++.|++. |++++..+.+|.||||.|+..++.+        
T Consensus       155 ~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~-Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~  233 (682)
T PHA02876        155 QDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSY-GADVNIIALDDLSVLECAVDSKNIDTIKAIIDN  233 (682)
T ss_pred             CCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            3566677788888888888888999999999999999999988875 6666655555555555555444444        


Q ss_pred             -------------------------------------------------------HHHHHHhCCCCCCCCCCCCchHHHH
Q 009183           75 -------------------------------------------------------IAQYIIDHGGDVNATDNNGQTALHW   99 (541)
Q Consensus        75 -------------------------------------------------------iv~~Ll~~g~~~~~~~~~g~tpL~~   99 (541)
                                                                             ++++|+++|++++.++.+|.||||+
T Consensus       234 ~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~  313 (682)
T PHA02876        234 RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYL  313 (682)
T ss_pred             CCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence                                                                   4444444555555555555555555


Q ss_pred             HHHhC-CHHHHHHHHhCCCCCCccccCCChHHHHHHHcC-CHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHH
Q 009183          100 AAVRG-SIAVADVLVQNGARVEAADVHGYRAVHVAAQYG-QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIR  177 (541)
Q Consensus       100 A~~~g-~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~  177 (541)
                      |+..| +.++++.|++.|++++.+|..|.||||+|+..+ +.+++..|++. |++++.+|..|.||||+|+..|+.++++
T Consensus       314 Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~-gadin~~d~~G~TpLh~Aa~~~~~~iv~  392 (682)
T PHA02876        314 MAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLEL-GANVNARDYCDKTPIHYAAVRNNVVIIN  392 (682)
T ss_pred             HHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHc-CCCCccCCCCCCCHHHHHHHcCCHHHHH
Confidence            55544 345555555555555555555555555555432 33444444433 6666666666666666666666666666


Q ss_pred             HHHhcCCCCCcccCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcC-chHHHHHHHHhhhhcc
Q 009183          178 LLLFRDASQGRQDKDGCTPLHWAALRGN-VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKG-HRQVALYLSNAQHMHR  255 (541)
Q Consensus       178 ~Ll~~g~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~-~~~i~~~L~~~~~~~~  255 (541)
                      +|+++|++++..+..|.||||+|+..++ ..+++.|+++|+  +++.+|..|.||||+|++.+ +.+++++|++.+....
T Consensus       393 ~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~ga--din~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n  470 (682)
T PHA02876        393 TLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGA--NVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVN  470 (682)
T ss_pred             HHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCC--CCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCC
Confidence            6666666666666666666666665444 345666666665  56677888888888888765 5688888877765443


Q ss_pred             cccccccccccccCCCCchhHHHHH
Q 009183          256 NHWGDKICGRKTSDIGYAPILFSII  280 (541)
Q Consensus       256 ~~~~~~~~~~~~~~lg~~~l~~~~i  280 (541)
                                .....|.+|+..+..
T Consensus       471 ----------~~d~~g~tpl~~a~~  485 (682)
T PHA02876        471 ----------AINIQNQYPLLIALE  485 (682)
T ss_pred             ----------CCCCCCCCHHHHHHH
Confidence                      123446677776653

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.9e-33  Score=283.47  Aligned_cols=244  Identities=17%  Similarity=0.200  Sum_probs=216.7

Q ss_pred             CCceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC
Q 009183            3 SSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH   82 (541)
Q Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~   82 (541)
                      .++.++++.+.+.+.+.+..+..|.||||.|+..|+.++++.|++. |++++..+.++.||||.|+..|+.++++.|+++
T Consensus        12 ~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~   90 (413)
T PHA02875         12 FGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVKYPDIESELHDAVEEGDVKAVEELLDL   90 (413)
T ss_pred             hCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence            4677888888888777777888899999999999999999888875 888999899999999999999999999999999


Q ss_pred             CCCCCC-CCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC
Q 009183           83 GGDVNA-TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGR  161 (541)
Q Consensus        83 g~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  161 (541)
                      |++.+. .+.+|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..|+.+++++|++. +++++.+|..|.
T Consensus        91 ~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~  169 (413)
T PHA02875         91 GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGC  169 (413)
T ss_pred             CCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCC
Confidence            987653 466799999999999999999999999999999999999999999999999999999976 999999999999


Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCCCcccCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCCCc-ccCCCCCCHHHHHHhc-
Q 009183          162 SPLHWAAYKGFADTIRLLLFRDASQGRQDKDG-CTPLHWAALRGNVEACTVLVHAGTKQELT-AKDKAGLTPTQLAYDK-  238 (541)
Q Consensus       162 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g-~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~-~~d~~g~t~l~~A~~~-  238 (541)
                      ||||+|+..|+.+++++|+++|++++..+..| .||+|+|+..|+.+++++|+++|++.++. ..+.++.||++.+... 
T Consensus       170 TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        170 TPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNMC  249 (413)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhhc
Confidence            99999999999999999999999999999886 58999999999999999999999965432 3467899999987643 


Q ss_pred             --CchHHHHHHH
Q 009183          239 --GHRQVALYLS  248 (541)
Q Consensus       239 --~~~~i~~~L~  248 (541)
                        ...+.++.+.
T Consensus       250 ~~~~~~~~~~li  261 (413)
T PHA02875        250 TNLESEAIDALI  261 (413)
T ss_pred             CCcccHHHHHHH
Confidence              2334444443

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.4e-33  Score=289.98  Aligned_cols=213  Identities=20%  Similarity=0.298  Sum_probs=133.8

Q ss_pred             CHHHHHHHHHhcCCCCccCCCCCchHHHHHHHc-----CcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhC---CHHHH
Q 009183           38 DFEKLRKFVEEDGASVSRPDGNGYFALQWAALN-----NFADIAQYIIDHGGDVNATDNNGQTALHWAAVRG---SIAVA  109 (541)
Q Consensus        38 ~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~-----~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g---~~~~v  109 (541)
                      +.++++.|++. |+++|.+|..|.||||.|+.+     ++.+++++|+++|+++|.++.+|.||||+|+..+   +.+++
T Consensus        50 ~~~iv~~Ll~~-Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv  128 (489)
T PHA02798         50 STDIVKLFINL-GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEIL  128 (489)
T ss_pred             CHHHHHHHHHC-CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHH
Confidence            44555444432 555555555555555554432     3445555555555555555555555555555443   34555


Q ss_pred             HHHHhCCCCCCccccCCChHHHHHHHcCC---HHHHHHHHHhcCCCcccCC-CCCCcHHHHHHHhC----cHHHHHHHHh
Q 009183          110 DVLVQNGARVEAADVHGYRAVHVAAQYGQ---TSFLNHIVAKYHADYDASD-NEGRSPLHWAAYKG----FADTIRLLLF  181 (541)
Q Consensus       110 ~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~---~~~v~~Ll~~~~~~~~~~d-~~g~t~L~~A~~~~----~~~~v~~Ll~  181 (541)
                      ++|+++|++++.+|..|.||||+|++.++   .++++.|+++ |++++..+ ..|.||||.++..+    +.+++++|++
T Consensus       129 ~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~-gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~  207 (489)
T PHA02798        129 LFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK-GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVD  207 (489)
T ss_pred             HHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHh-CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence            55555555555555555555555555444   4555555544 45554442 23445555444322    3444444444


Q ss_pred             cC---------------------------------------CCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc
Q 009183          182 RD---------------------------------------ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELT  222 (541)
Q Consensus       182 ~g---------------------------------------~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~  222 (541)
                      +|                                       +++|.+|..|.||||+|+..|+.+++++|+++|+  +++
T Consensus       208 ~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GA--din  285 (489)
T PHA02798        208 NGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGG--DIN  285 (489)
T ss_pred             CCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCC--ccc
Confidence            43                                       5667788889999999999999999999999998  788


Q ss_pred             ccCCCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183          223 AKDKAGLTPTQLAYDKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       223 ~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~  254 (541)
                      .+|..|+|||+.|+++++.++++.|++.++..
T Consensus       286 ~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        286 IITELGNTCLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHccCCCH
Confidence            89999999999999999999999998876544

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=288.08  Aligned_cols=242  Identities=15%  Similarity=0.195  Sum_probs=173.0

Q ss_pred             ceEEeeccccCCCCCCCCCCcchhhHHHHHHc--CCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcC------cHHHH
Q 009183            5 EIEVVSSTEAIPNENQNDNQAAVTDVFSASAY--GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNN------FADIA   76 (541)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~--g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~------~~~iv   76 (541)
                      .+++++.|.+.+.+.+.. ..|.++|+.++..  ++.++++.|++. |+++|.++ .+.||||.|+.++      +.+++
T Consensus        15 ~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv   91 (494)
T PHA02989         15 DKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDN-GADVNYKG-YIETPLCAVLRNREITSNKIKKIV   91 (494)
T ss_pred             cHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHc-CCCccCCC-CCCCcHHHHHhccCcchhhHHHHH
Confidence            445556666555555544 4466666554433  246666666653 77777665 4567777766543      45677


Q ss_pred             HHHHhCCCCCCCCCCCCchHHHHHHHh---CCHHHHHHHHhCCCCC-CccccCCChHHHHHHHc--CCHHHHHHHHHhcC
Q 009183           77 QYIIDHGGDVNATDNNGQTALHWAAVR---GSIAVADVLVQNGARV-EAADVHGYRAVHVAAQY--GQTSFLNHIVAKYH  150 (541)
Q Consensus        77 ~~Ll~~g~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~-~~~d~~g~t~l~~A~~~--g~~~~v~~Ll~~~~  150 (541)
                      ++|+++|++++.++..|.||||.|+..   |+.+++++|+++|+|+ +.+|..|.||||+|+..  ++.++++.|++. |
T Consensus        92 ~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~-G  170 (494)
T PHA02989         92 KLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF-G  170 (494)
T ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc-C
Confidence            777777777777777777777766544   4677777777777777 66777777777776543  466777777765 6


Q ss_pred             CCccc-CCCCCCcHHHHHHHhC----cHHHHHHHHhcCCCC--------------------------------------C
Q 009183          151 ADYDA-SDNEGRSPLHWAAYKG----FADTIRLLLFRDASQ--------------------------------------G  187 (541)
Q Consensus       151 ~~~~~-~d~~g~t~L~~A~~~~----~~~~v~~Ll~~g~~~--------------------------------------~  187 (541)
                      ++++. .+..|.||||.|+..+    +.+++++|+++|+++                                      +
T Consensus       171 adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn  250 (494)
T PHA02989        171 VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKIN  250 (494)
T ss_pred             CCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCC
Confidence            77666 4666777777766543    667777777666654                                      4


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          188 RQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       188 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      .+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.|||++|+++|+.++++.|++.++
T Consensus       251 ~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Ga--din~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        251 KKDKKGFNPLLISAKVDNYEAFNYLLKLGD--DIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             CCCCCCCCHHHHHHHhcCHHHHHHHHHcCC--CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            456669999999999999999999999998  778899999999999999999999999987653

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.1e-32  Score=293.71  Aligned_cols=239  Identities=23%  Similarity=0.225  Sum_probs=214.5

Q ss_pred             eccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcC-cHHHHHHHHhCCCCCCC
Q 009183           10 SSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNN-FADIAQYIIDHGGDVNA   88 (541)
Q Consensus        10 ~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~iv~~Ll~~g~~~~~   88 (541)
                      +.+.+.+.+....+..|.||||.|+..|+.+.+..++.+.|++++.+|.+|.||||+|+..| +.++++.|++.|++++.
T Consensus       257 ~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~  336 (682)
T PHA02876        257 LLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA  336 (682)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCC
Confidence            33444445556667789999999999999876666666779999999999999999999999 69999999999999999


Q ss_pred             CCCCCchHHHHHHHh-CCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHH
Q 009183           89 TDNNGQTALHWAAVR-GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA  167 (541)
Q Consensus        89 ~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A  167 (541)
                      .+..|.||||+|+.. ++.++++.|++.|++++.+|..|.||||+|+..|+.++++.|++. |++++..+..|.||||+|
T Consensus       337 ~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~-gad~~~~~~~g~T~Lh~A  415 (682)
T PHA02876        337 ADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDY-GADIEALSQKIGTALHFA  415 (682)
T ss_pred             cccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCccccCCCCCchHHHH
Confidence            999999999999985 579999999999999999999999999999999999999999976 999999999999999999


Q ss_pred             HHhCc-HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHH
Q 009183          168 AYKGF-ADTIRLLLFRDASQGRQDKDGCTPLHWAALRG-NVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL  245 (541)
Q Consensus       168 ~~~~~-~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g-~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~  245 (541)
                      +..+. ..++++|+++|++++.+|..|+||||+|+..| +.+++++|+++|+  +++.+|..|.||+++|++.+  ++++
T Consensus       416 ~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Ga--d~n~~d~~g~tpl~~a~~~~--~~v~  491 (682)
T PHA02876        416 LCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGA--DVNAINIQNQYPLLIALEYH--GIVN  491 (682)
T ss_pred             HHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHhC--CHHH
Confidence            98766 57799999999999999999999999999976 6899999999998  78889999999999999865  5788


Q ss_pred             HHHHhhhh
Q 009183          246 YLSNAQHM  253 (541)
Q Consensus       246 ~L~~~~~~  253 (541)
                      .|+..+..
T Consensus       492 ~Ll~~~a~  499 (682)
T PHA02876        492 ILLHYGAE  499 (682)
T ss_pred             HHHHCCCC
Confidence            88876653

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-31  Score=276.48  Aligned_cols=237  Identities=21%  Similarity=0.276  Sum_probs=193.5

Q ss_pred             hHHHHHHcCCHHHHHHHHHhc---CCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCC
Q 009183           29 DVFSASAYGDFEKLRKFVEED---GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGS  105 (541)
Q Consensus        29 ~L~~A~~~g~~~~v~~ll~~~---~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~  105 (541)
                      .|+.++...+.+.+.+.++..   +...+.....+.||||+|+..|+.++|++|+++|++++.++.+|.||||+||..|+
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~   82 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPN   82 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCcc
Confidence            367778888877777777652   22223345578899999999999999999999999999999999999999998765


Q ss_pred             HH----------------------------------------------------------------HHHHHHhCCCCCCc
Q 009183          106 IA----------------------------------------------------------------VADVLVQNGARVEA  121 (541)
Q Consensus       106 ~~----------------------------------------------------------------~v~~Ll~~g~~~~~  121 (541)
                      .+                                                                ++++|+++|++++.
T Consensus        83 ~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~  162 (477)
T PHA02878         83 KLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINM  162 (477)
T ss_pred             HhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCc
Confidence            42                                                                66677777888888


Q ss_pred             cccC-CChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHH
Q 009183          122 ADVH-GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA  200 (541)
Q Consensus       122 ~d~~-g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A  200 (541)
                      +|.. |.||||+|+..|+.+++++|++. |++++..|..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|
T Consensus       163 ~~~~~g~tpLh~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A  241 (477)
T PHA02878        163 KDRHKGNTALHYATENKDQRLTELLLSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHIS  241 (477)
T ss_pred             cCCCCCCCHHHHHHhCCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            8888 89999999999999999988876 888888899999999999999999999999999999999999999999999


Q ss_pred             HHc-CCHHHHHHHHHcCCCCCCcccCC-CCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHH
Q 009183          201 ALR-GNVEACTVLVHAGTKQELTAKDK-AGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFS  278 (541)
Q Consensus       201 ~~~-g~~~~v~~Ll~~g~~~~~~~~d~-~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~  278 (541)
                      +.. ++.+++++|+++|+  +++.++. .|.||||+|  .++.+++++|++.++...          .....|.+|+..+
T Consensus       242 ~~~~~~~~iv~~Ll~~ga--dvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin----------~~d~~g~TpL~~A  307 (477)
T PHA02878        242 VGYCKDYDILKLLLEHGV--DVNAKSYILGLTALHSS--IKSERKLKLLLEYGADIN----------SLNSYKLTPLSSA  307 (477)
T ss_pred             HHhcCCHHHHHHHHHcCC--CCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCC----------CcCCCCCCHHHHH
Confidence            875 68899999999988  5666665 789999998  467788888888776543          2344577887776


Q ss_pred             HH
Q 009183          279 II  280 (541)
Q Consensus       279 ~i  280 (541)
                      +.
T Consensus       308 ~~  309 (477)
T PHA02878        308 VK  309 (477)
T ss_pred             HH
Confidence            53

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=4.4e-32  Score=273.39  Aligned_cols=247  Identities=23%  Similarity=0.315  Sum_probs=219.6

Q ss_pred             eEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHh----
Q 009183            6 IEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIID----   81 (541)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~----   81 (541)
                      .+.++-+.+...+.+..++.+.||||.||..++.| .+++|.+.++++...|.+|++|+|.|+++|..++.+..+.    
T Consensus       134 ~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E-~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~  212 (929)
T KOG0510|consen  134 YSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVE-AKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGY  212 (929)
T ss_pred             HHHHHHHHHhcCCccccccCCCchhhHHHhcChHH-HHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccc
Confidence            34455666777888889999999999999999999 6666666799999999999999999999999999999997    


Q ss_pred             -CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCC---------------CccccCCChHHHHHHHcCCHHHHHHH
Q 009183           82 -HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV---------------EAADVHGYRAVHVAAQYGQTSFLNHI  145 (541)
Q Consensus        82 -~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~---------------~~~d~~g~t~l~~A~~~g~~~~v~~L  145 (541)
                       ++..+|.-+..+.||||.|+..|++++++.++++|+..               +..|+.|.||||+|++.|+.+.+..|
T Consensus       213 ~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~L  292 (929)
T KOG0510|consen  213 ERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNL  292 (929)
T ss_pred             hhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHH
Confidence             56778888999999999999999999999999987543               34588999999999999999999999


Q ss_pred             HHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh-cC-CCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-Cc
Q 009183          146 VAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF-RD-ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQE-LT  222 (541)
Q Consensus       146 l~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~-~~  222 (541)
                      +.. |++++.++.++.||||.||..|+.+.++-|++ .| ...|..|..|+||||.|+.+|+.++++.|++.|+... ..
T Consensus       293 l~~-Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~  371 (929)
T KOG0510|consen  293 LGF-GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMS  371 (929)
T ss_pred             HHc-CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccc
Confidence            976 99999999999999999999999999999998 33 3467788889999999999999999999999998422 11


Q ss_pred             ccCCCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183          223 AKDKAGLTPTQLAYDKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       223 ~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~  254 (541)
                      ..|.+|.||||.|+..|+...++.|+.++...
T Consensus       372 e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  372 EADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             ccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            44999999999999999999999999998776

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-31  Score=277.83  Aligned_cols=235  Identities=20%  Similarity=0.204  Sum_probs=201.0

Q ss_pred             HHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHc--CcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhC------
Q 009183           33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALN--NFADIAQYIIDHGGDVNATDNNGQTALHWAAVRG------  104 (541)
Q Consensus        33 A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~--~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g------  104 (541)
                      .+...+.+.++.|++. |+++|.+ .+|.||||.++..  ++.++|++|+++|+++|.++ .+.||||.|+..+      
T Consensus        10 ~~~~~~~~~v~~LL~~-GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~   86 (494)
T PHA02989         10 YSDTVDKNALEFLLRT-GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNK   86 (494)
T ss_pred             cCCcCcHHHHHHHHHc-CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhh
Confidence            3446899999999865 9999998 6799998876554  37999999999999999886 5799999998754      


Q ss_pred             CHHHHHHHHhCCCCCCccccCCChHHHHHHHc---CCHHHHHHHHHhcCCCc-ccCCCCCCcHHHHHHHh--CcHHHHHH
Q 009183          105 SIAVADVLVQNGARVEAADVHGYRAVHVAAQY---GQTSFLNHIVAKYHADY-DASDNEGRSPLHWAAYK--GFADTIRL  178 (541)
Q Consensus       105 ~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~---g~~~~v~~Ll~~~~~~~-~~~d~~g~t~L~~A~~~--~~~~~v~~  178 (541)
                      +.+++++|+++|+|++.+|..|.||||.|+..   ++.+++++|+++ |+++ +.+|..|.||||+|+..  ++.+++++
T Consensus        87 ~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~-Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~  165 (494)
T PHA02989         87 IKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK-GINVNDVKNSRGYNLLHMYLESFSVKKDVIKI  165 (494)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC-CCCcccccCCCCCCHHHHHHHhccCCHHHHHH
Confidence            47899999999999999999999999988765   678999999987 9999 89999999999998765  57899999


Q ss_pred             HHhcCCCCCc-ccCCCCcHHHHHHHcC----CHHHHHHHHHcCCCCC---------------------------------
Q 009183          179 LLFRDASQGR-QDKDGCTPLHWAALRG----NVEACTVLVHAGTKQE---------------------------------  220 (541)
Q Consensus       179 Ll~~g~~~~~-~d~~g~tpLh~A~~~g----~~~~v~~Ll~~g~~~~---------------------------------  220 (541)
                      |+++|++++. .+..|.||||.|+..+    +.+++++|+++|++.+                                 
T Consensus       166 Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~  245 (494)
T PHA02989        166 LLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK  245 (494)
T ss_pred             HHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh
Confidence            9999999998 6788999999998764    8999999999998532                                 


Q ss_pred             ---CcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHHHH
Q 009183          221 ---LTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIII  281 (541)
Q Consensus       221 ---~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i~  281 (541)
                         ++.+|..|.||||+|++.|+.+++++|++.++...          .....|.+|+..+...
T Consensus       246 ~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin----------~~d~~G~TpL~~A~~~  299 (494)
T PHA02989        246 YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY----------NVSKDGDTVLTYAIKH  299 (494)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc----------ccCCCCCCHHHHHHHc
Confidence               34567789999999999999999999999887654          2345678888887643

>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=99.98  E-value=2.8e-32  Score=242.33  Aligned_cols=103  Identities=36%  Similarity=0.677  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhhccCCCcccCCCCCCCCCCCCCccccccCCCCCCcCCccccccccccccCCCCCcCCccchhhhhccCC
Q 009183          315 AVGSLIMFYRCSSKDPGYIKRSQDIDNHTDSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDH  394 (541)
Q Consensus       315 ~~~~~~~~~~~~~~dPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DH  394 (541)
                      .++.+++|..+..+|||.+.+.......     ...+   -+...+  -...-|.||++.||.||||||+|||||.||||
T Consensus       108 vivp~i~f~ltc~snpg~i~k~n~s~~~-----~~yp---YDy~if--~k~~kCSTCki~KPARSKHCsiCNrCV~rfDH  177 (341)
T KOG1312|consen  108 VIVPLIFFTLTCGSNPGIITKANESLFL-----HVYP---YDYVIF--PKNVKCSTCKIRKPARSKHCSICNRCVHRFDH  177 (341)
T ss_pred             HHHHHHHHhhhhcCCCCccchhhhccce-----eccC---ccceee--cCCCccccccCCCccccccchHHHHHHHHhcc
Confidence            3345677778999999999875321110     0000   001111  11245999999999999999999999999999


Q ss_pred             cCceeeccccCCchHHHHHHHHHHHHHHHHHHH
Q 009183          395 HCPWISNCVGKRNKRDFFIFLCLGTLTSYLASG  427 (541)
Q Consensus       395 HC~wi~nCIG~~N~~~F~~fl~~~~~~~~~~~~  427 (541)
                      ||.|+|||||++|.|||++|+++....+.+.++
T Consensus       178 HCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaiv  210 (341)
T KOG1312|consen  178 HCIWINNCIGAWNIRYFLLFLLTLISLATYAIV  210 (341)
T ss_pred             ceEeeecccccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999766666544

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=271.93  Aligned_cols=230  Identities=18%  Similarity=0.246  Sum_probs=196.5

Q ss_pred             CCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHc--CcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh-----CCHHHH
Q 009183           37 GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALN--NFADIAQYIIDHGGDVNATDNNGQTALHWAAVR-----GSIAVA  109 (541)
Q Consensus        37 g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~--~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~-----g~~~~v  109 (541)
                      =+++.|+.|++.  .+++.. ..|.|+++.+...  ++.++|++|+++|++++.++..|.||||.|+..     ++.+++
T Consensus        16 ~~~~~v~~ll~~--~~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv   92 (489)
T PHA02798         16 VKLSTVKLLIKS--CNPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIV   92 (489)
T ss_pred             ccHHHHHHHHhc--CChhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHH
Confidence            457899999964  344444 4577877755544  489999999999999999999999999998864     679999


Q ss_pred             HHHHhCCCCCCccccCCChHHHHHHHcC---CHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc---HHHHHHHHhcC
Q 009183          110 DVLVQNGARVEAADVHGYRAVHVAAQYG---QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF---ADTIRLLLFRD  183 (541)
Q Consensus       110 ~~Ll~~g~~~~~~d~~g~t~l~~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~---~~~v~~Ll~~g  183 (541)
                      ++|+++|+|++.+|..|.||||+|+..+   +.+++++|+++ |++++.+|..|.||||+|+..++   .+++++|+++|
T Consensus        93 ~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g  171 (489)
T PHA02798         93 KILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIEN-GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKG  171 (489)
T ss_pred             HHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhC
Confidence            9999999999999999999999999876   67999999986 99999999999999999999987   89999999999


Q ss_pred             CCCCccc-CCCCcHHHHHHHc----CCHHHHHHHHHcCCCC-------------------------------------CC
Q 009183          184 ASQGRQD-KDGCTPLHWAALR----GNVEACTVLVHAGTKQ-------------------------------------EL  221 (541)
Q Consensus       184 ~~~~~~d-~~g~tpLh~A~~~----g~~~~v~~Ll~~g~~~-------------------------------------~~  221 (541)
                      ++++.++ ..|.||||.++..    ++.+++++|+++|++.                                     ++
T Consensus       172 adin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dv  251 (489)
T PHA02798        172 VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDI  251 (489)
T ss_pred             CCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCC
Confidence            9999885 4689999998764    4799999999988632                                     34


Q ss_pred             cccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHHH
Q 009183          222 TAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSII  280 (541)
Q Consensus       222 ~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i  280 (541)
                      +.+|..|.|||++|+..|+.+++++|++.++...          .....|.+|+..++.
T Consensus       252 N~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin----------~~d~~G~TpL~~A~~  300 (489)
T PHA02798        252 NQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN----------IITELGNTCLFTAFE  300 (489)
T ss_pred             CCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccc----------ccCCCCCcHHHHHHH
Confidence            5578889999999999999999999999887654          234568899888774

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=2.4e-31  Score=252.37  Aligned_cols=216  Identities=27%  Similarity=0.362  Sum_probs=193.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhcC-C---CCccCCCCCchHHHHHHHcCcHHHHHHHHh-CCCCCCCC--------CCCCchH
Q 009183           30 VFSASAYGDFEKLRKFVEEDG-A---SVSRPDGNGYFALQWAALNNFADIAQYIID-HGGDVNAT--------DNNGQTA   96 (541)
Q Consensus        30 L~~A~~~g~~~~v~~ll~~~~-~---~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~--------~~~g~tp   96 (541)
                      .+.|++.|++..+..|+.... .   +.-..+.+|-|||-+||++||.++|++|++ .++++...        ...|-+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            348999999999999887533 1   122235678899999999999999999998 57776543        2357899


Q ss_pred             HHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHH
Q 009183           97 LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI  176 (541)
Q Consensus        97 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v  176 (541)
                      |-.|+..||+++|+.|+++|+++|.......|||..||.-|+.++++||+++ ++|++..|..|+|.||.||++|+.+++
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~-gad~~IanrhGhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEH-GADPEIANRHGHTCLMIACYKGHVDIA  166 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHc-CCCCcccccCCCeeEEeeeccCchHHH
Confidence            9999999999999999999999999988999999999999999999999976 999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHH
Q 009183          177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSN  249 (541)
Q Consensus       177 ~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~  249 (541)
                      ++|++.|+|+|.++..|+|+||.++.+|+.+++++|+.+|+..   .+|..|.|||..|+..|+.++++.|.+
T Consensus       167 qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i---~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  167 QYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI---DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCcee---eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999999999999999999999999999999843   468889999999999999999999984

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.5e-29  Score=266.94  Aligned_cols=242  Identities=12%  Similarity=0.105  Sum_probs=198.9

Q ss_pred             EEeeccccCCCCCCCCCCcchhhHHHHHHc---CCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHH----HHHHH
Q 009183            7 EVVSSTEAIPNENQNDNQAAVTDVFSASAY---GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFAD----IAQYI   79 (541)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~---g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~----iv~~L   79 (541)
                      |.++.+..........++.|.||||.|+..   |+.++++.||+ .|++++.+|..|.||||+|+..|+.+    +++.|
T Consensus        13 ~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~-~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L   91 (661)
T PHA02917         13 DELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLD-SGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL   91 (661)
T ss_pred             HHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHH-CCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence            344555556666667788999999997555   88999999987 49999999999999999999999854    56788


Q ss_pred             HhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHH--HcCCHHHHHHHHHhcCCCcccCC
Q 009183           80 IDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA--QYGQTSFLNHIVAKYHADYDASD  157 (541)
Q Consensus        80 l~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~--~~g~~~~v~~Ll~~~~~~~~~~d  157 (541)
                      ++.+...+..+  ..+++|+|+..|+.+++++|+++|+|++.+|..|.||||.|+  ..|+.+++++|++. |++++.+|
T Consensus        92 l~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~-Ga~vn~~d  168 (661)
T PHA02917         92 LEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN-GCSVLYED  168 (661)
T ss_pred             HhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc-CCCccccc
Confidence            87754445443  237788999999999999999999999999999999999654  57899999999987 99987655


Q ss_pred             C---CC-----------CcHHHHHHH-----------hCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCH--HHHH
Q 009183          158 N---EG-----------RSPLHWAAY-----------KGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV--EACT  210 (541)
Q Consensus       158 ~---~g-----------~t~L~~A~~-----------~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~--~~v~  210 (541)
                      .   .|           .||||+|+.           .++.+++++|+++|++++.+|.+|.||||+|+.+|+.  ++|+
T Consensus       169 ~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk  248 (661)
T PHA02917        169 EDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVK  248 (661)
T ss_pred             cccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHH
Confidence            3   23           599999986           4578999999999999999999999999999999985  7999


Q ss_pred             HHHHcCCCCC--CcccCCCCCCHHHHHHh-------c--CchHHHHHHHHhhhh
Q 009183          211 VLVHAGTKQE--LTAKDKAGLTPTQLAYD-------K--GHRQVALYLSNAQHM  253 (541)
Q Consensus       211 ~Ll~~g~~~~--~~~~d~~g~t~l~~A~~-------~--~~~~i~~~L~~~~~~  253 (541)
                      +|++ |++.+  ....|..|.+|+++|+.       +  .+.+++++|++.++.
T Consensus       249 ~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        249 LLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             HHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence            9975 76322  12466778889999983       1  267999999998864

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1e-28  Score=227.49  Aligned_cols=174  Identities=17%  Similarity=0.191  Sum_probs=106.3

Q ss_pred             CCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhC--CHHHHHHHHhCCCCCCccc-cCCChHHHHHHH
Q 009183           59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRG--SIAVADVLVQNGARVEAAD-VHGYRAVHVAAQ  135 (541)
Q Consensus        59 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~d-~~g~t~l~~A~~  135 (541)
                      .+.||||+|+..|+.++|+.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|+.
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence            445666666666666666666553   3444555666666665533  5666666666666666654 356666666543


Q ss_pred             c---CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHH--hCcHHHHHHHHhcCCCCCcccCCCCcHHHH-HHHcCCHHHH
Q 009183          136 Y---GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY--KGFADTIRLLLFRDASQGRQDKDGCTPLHW-AALRGNVEAC  209 (541)
Q Consensus       136 ~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~--~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~-A~~~g~~~~v  209 (541)
                      .   ++.+++++|+++ |++++.+|..|.||||+|+.  .++.+++++|+++|++++.+|.+|.||||. |+..++.+++
T Consensus        97 ~~~~~~~eiv~~Ll~~-gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv  175 (209)
T PHA02859         97 FNKNVEPEILKILIDS-GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIF  175 (209)
T ss_pred             hCccccHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHH
Confidence            2   345666666644 66666666666666666554  345666777777777776666667777764 4455666777


Q ss_pred             HHHHHcCCCCCCcccCCCCCCHHHHHHhc
Q 009183          210 TVLVHAGTKQELTAKDKAGLTPTQLAYDK  238 (541)
Q Consensus       210 ~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~  238 (541)
                      ++|+++|+  +++.+|..|+||+++|..+
T Consensus       176 ~~Ll~~Ga--di~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        176 DFLTSLGI--DINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             HHHHHcCC--CCCCCCCCCCCHHHHHhhh
Confidence            77776666  5556666677777776654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.3e-28  Score=226.80  Aligned_cols=177  Identities=15%  Similarity=0.187  Sum_probs=160.5

Q ss_pred             CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcC--cHHHHHHHHhCCCCCCCCC-CCCchHHHH
Q 009183           23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNN--FADIAQYIIDHGGDVNATD-NNGQTALHW   99 (541)
Q Consensus        23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~--~~~iv~~Ll~~g~~~~~~~-~~g~tpL~~   99 (541)
                      .+...+||+.|++.|+++.++.|++.    ++..|..|.||||+|+.++  +.+++++|+++|++++.++ ..|.||||+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            45668999999999999999999864    5778899999999999865  8999999999999999997 479999999


Q ss_pred             HHHh---CCHHHHHHHHhCCCCCCccccCCChHHHHHHH--cCCHHHHHHHHHhcCCCcccCCCCCCcHHHH-HHHhCcH
Q 009183          100 AAVR---GSIAVADVLVQNGARVEAADVHGYRAVHVAAQ--YGQTSFLNHIVAKYHADYDASDNEGRSPLHW-AAYKGFA  173 (541)
Q Consensus       100 A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~-A~~~~~~  173 (541)
                      |+..   ++.+++++|+++|++++.+|..|.||||.|+.  .++.+++++|++. |++++.+|..|.||||. |+..++.
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~-gadin~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS-GVSFLNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc-CCCcccccCCCCcHHHHHHHhcCCH
Confidence            8764   47999999999999999999999999999986  4689999999976 99999999999999995 5678899


Q ss_pred             HHHHHHHhcCCCCCcccCCCCcHHHHHHHcC
Q 009183          174 DTIRLLLFRDASQGRQDKDGCTPLHWAALRG  204 (541)
Q Consensus       174 ~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g  204 (541)
                      +++++|+++|++++.+|..|.||||+|..++
T Consensus       173 ~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        173 KIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999999999999999999999998764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.8e-28  Score=242.28  Aligned_cols=207  Identities=15%  Similarity=0.116  Sum_probs=184.5

Q ss_pred             CHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCC------CCCCCCchHHHHHHH--hCCHHHH
Q 009183           38 DFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN------ATDNNGQTALHWAAV--RGSIAVA  109 (541)
Q Consensus        38 ~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~------~~~~~g~tpL~~A~~--~g~~~~v  109 (541)
                      -.+++-+++..+|+++|..+.+|     +|+..+..|++++|+++|++++      .++..++|+||.|+.  .|+.+++
T Consensus        60 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV  134 (437)
T PHA02795         60 PVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIV  134 (437)
T ss_pred             HHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHH
Confidence            45667777778899999988888     8999999999999999999998      777889999999999  8999999


Q ss_pred             HHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcc-cC-----CCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 009183          110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYD-AS-----DNEGRSPLHWAAYKGFADTIRLLLFRD  183 (541)
Q Consensus       110 ~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~-~~-----d~~g~t~L~~A~~~~~~~~v~~Ll~~g  183 (541)
                      ++|+++|||++.++  +.||+|.|+..++.+++++|+++ |++.+ ..     +..+.+++|.|+..++.+++++|+++|
T Consensus       135 ~~LI~~GADIn~~~--~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G  211 (437)
T PHA02795        135 DFMVDHGAVIYKIE--CLNAYFRGICKKESSVVEFILNC-GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI  211 (437)
T ss_pred             HHHHHCCCCCCCCC--CCCHHHHHHHcCcHHHHHHHHhc-CCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc
Confidence            99999999998754  58999999999999999999987 65332 22     234779999999999999999999999


Q ss_pred             CCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcC--------chHHHHHHHHhhhhc
Q 009183          184 ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKG--------HRQVALYLSNAQHMH  254 (541)
Q Consensus       184 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~--------~~~i~~~L~~~~~~~  254 (541)
                      ++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.||||+|+.+|        +.+++++|+++++..
T Consensus       212 ADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA--dIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        212 EDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGA--NVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             CCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999998  78889999999999999998        468999998876643

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.9e-29  Score=239.56  Aligned_cols=192  Identities=26%  Similarity=0.348  Sum_probs=179.2

Q ss_pred             CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccC--------CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCC
Q 009183           22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRP--------DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNG   93 (541)
Q Consensus        22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--------d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g   93 (541)
                      ...+|.+||..||++|+.++|++|++..++++...        ..+|-+||-.|+..||+++||.|+++|+++|.....+
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TN  117 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTN  117 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccC
Confidence            45567799999999999999999999877776543        3578899999999999999999999999999999999


Q ss_pred             chHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcH
Q 009183           94 QTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFA  173 (541)
Q Consensus        94 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~  173 (541)
                      .|||-.||.-|+.+++++|+++|+|++..|..|.|.|++||..|+.+++++|++. |++++.++..|+|+||.|+..|+.
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~-gADvn~ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQ-GADVNAKSYKGNTALHDCAESGSV  196 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHh-CCCcchhcccCchHHHhhhhcccH
Confidence            9999999999999999999999999999999999999999999999999999987 999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 009183          174 DTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA  215 (541)
Q Consensus       174 ~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  215 (541)
                      +++++|+++|+.+. +|..|.|||..|+..|+.++|..|++.
T Consensus       197 divq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  197 DIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             HHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            99999999999877 466699999999999999999999963

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=4.3e-30  Score=275.24  Aligned_cols=244  Identities=28%  Similarity=0.388  Sum_probs=218.3

Q ss_pred             EEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCC
Q 009183            7 EVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV   86 (541)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~   86 (541)
                      ++...+..........++.+.++++.|+.+|..+.++.++.+ +.+++..+..|.||||.|+..++.++++.++++|+++
T Consensus       355 ~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~-ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~  433 (1143)
T KOG4177|consen  355 EVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEA-GADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP  433 (1143)
T ss_pred             HHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhc-cCCcccCCCCCcceeeehhhccCcceEEEEeccCCCh
Confidence            345566666677777888899999999999999998877765 8889999999999999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhC-CHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHh-----------------
Q 009183           87 NATDNNGQTALHWAAVRG-SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK-----------------  148 (541)
Q Consensus        87 ~~~~~~g~tpL~~A~~~g-~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~-----------------  148 (541)
                      +..+..|+||+|.|+..| ..++...+++.|++++..-..|.||||.|++.|+.+++..+++.                 
T Consensus       434 ~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhl  513 (1143)
T KOG4177|consen  434 NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHL  513 (1143)
T ss_pred             hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhh
Confidence            999999999999999998 88888899999999999999999999999999998888877763                 


Q ss_pred             ---------------cCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009183          149 ---------------YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV  213 (541)
Q Consensus       149 ---------------~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  213 (541)
                                     .|++.+.++..|.||||.|+..|+.++|++|+++|++++.+|+.|+||||.|+..|+.+++.+|+
T Consensus       514 a~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLl  593 (1143)
T KOG4177|consen  514 AADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLL  593 (1143)
T ss_pred             hhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHH
Confidence                           35667778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhh
Q 009183          214 HAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHM  253 (541)
Q Consensus       214 ~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~  253 (541)
                      ++|+  +++..|.+|.|||++|++.|+.++++.|......
T Consensus       594 k~GA--~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  594 KHGA--SVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HcCC--CCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            9999  7888999999999999999999999999876654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.8e-28  Score=258.98  Aligned_cols=205  Identities=17%  Similarity=0.157  Sum_probs=177.7

Q ss_pred             HHHHHHHHHhcCCCCccCCCCCchHHHHHHHc---CcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCH----HHHHH
Q 009183           39 FEKLRKFVEEDGASVSRPDGNGYFALQWAALN---NFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSI----AVADV  111 (541)
Q Consensus        39 ~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~---~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~----~~v~~  111 (541)
                      ++.+++++. ++..++.+|.+|.||||+|+..   |+.++|++|+++|++++.++..|.||||+|+..|+.    ++++.
T Consensus        12 ~~~~~~l~~-~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~   90 (661)
T PHA02917         12 LDELKQMLR-DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMA   90 (661)
T ss_pred             HHHHHHHHh-ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHH
Confidence            577888887 5777888899999999998665   889999999999999999999999999999999984    46678


Q ss_pred             HHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHH--HHhCcHHHHHHHHhcCCCCCcc
Q 009183          112 LVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA--AYKGFADTIRLLLFRDASQGRQ  189 (541)
Q Consensus       112 Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A--~~~~~~~~v~~Ll~~g~~~~~~  189 (541)
                      |++.+...+..+.  .++++.|+..++.+++++|+++ |++++.+|..|.||||.|  +..|+.+++++|+++|++++.+
T Consensus        91 Ll~~~~~~n~~~~--~~~~~~a~~~~~~e~vk~Ll~~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~  167 (661)
T PHA02917         91 LLEATGYSNINDF--NIFSYMKSKNVDVDLIKVLVEH-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYE  167 (661)
T ss_pred             HHhccCCCCCCCc--chHHHHHhhcCCHHHHHHHHHc-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccc
Confidence            8887544554443  3677889999999999999987 999999999999999965  3578999999999999999866


Q ss_pred             cC---CC-----------CcHHHHHHH-----------cCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCch--H
Q 009183          190 DK---DG-----------CTPLHWAAL-----------RGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHR--Q  242 (541)
Q Consensus       190 d~---~g-----------~tpLh~A~~-----------~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~--~  242 (541)
                      |.   .|           .||||+|+.           .++.+++++|+++|+  +++.+|..|.||||+|+++|+.  +
T Consensus       168 d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga--dvn~~d~~G~TpLh~A~~~g~~~~e  245 (661)
T PHA02917        168 DEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI--KPSSIDKNYCTALQYYIKSSHIDID  245 (661)
T ss_pred             ccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC--CcccCCCCCCcHHHHHHHcCCCcHH
Confidence            53   24           599999986           468999999999998  7889999999999999999985  7


Q ss_pred             HHHHHHH
Q 009183          243 VALYLSN  249 (541)
Q Consensus       243 i~~~L~~  249 (541)
                      ++++|.+
T Consensus       246 ivk~Li~  252 (661)
T PHA02917        246 IVKLLMK  252 (661)
T ss_pred             HHHHHHh
Confidence            9999975

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.5e-27  Score=246.66  Aligned_cols=246  Identities=15%  Similarity=0.143  Sum_probs=199.3

Q ss_pred             CceEEeeccccCCCCCC-------CCCCcchhh-HHH------HHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHH--H
Q 009183            4 SEIEVVSSTEAIPNENQ-------NDNQAAVTD-VFS------ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQW--A   67 (541)
Q Consensus         4 ~~~~~~~~l~~~~~~~~-------~~~~~~~~~-L~~------A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~--A   67 (541)
                      ...++++.|.+.+.+..       ..+.+..+| |+.      +..++..|+++.|++ +|+++|.+|.+|.||||+  |
T Consensus       166 ~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs-~GadIN~kd~~G~TpLh~~~~  244 (672)
T PHA02730        166 PRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLID-NNVSIHGRDEGGSLPIQYYWS  244 (672)
T ss_pred             CchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHH
Confidence            56677777777766663       234445544 331      256788888887775 599999999999999995  5


Q ss_pred             HHcCcHHHHHHHHh--------------------------------CCCCCCC--------------------CCCCCch
Q 009183           68 ALNNFADIAQYIID--------------------------------HGGDVNA--------------------TDNNGQT   95 (541)
Q Consensus        68 ~~~~~~~iv~~Ll~--------------------------------~g~~~~~--------------------~~~~g~t   95 (541)
                      +..|+.|+|++|++                                +|+|+..                    .+..|.+
T Consensus       245 ~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n  324 (672)
T PHA02730        245 CSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYN  324 (672)
T ss_pred             cCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccc
Confidence            55677999999999                                7887654                    4455544


Q ss_pred             ---------------------HHHHHHHhC---CHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC----HHHHHHHHH
Q 009183           96 ---------------------ALHWAAVRG---SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ----TSFLNHIVA  147 (541)
Q Consensus        96 ---------------------pL~~A~~~g---~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~----~~~v~~Ll~  147 (541)
                                           .||.-.+.+   +.+++++|+++||+++.+ ..|.||||+|+..++    .+++++|++
T Consensus       325 ~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs  403 (672)
T PHA02730        325 HYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVE  403 (672)
T ss_pred             hhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHH
Confidence                                 666666655   699999999999999985 789999999998875    799999998


Q ss_pred             hcCC--CcccCCCCCCcHHHH---HHHhC---------cHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009183          148 KYHA--DYDASDNEGRSPLHW---AAYKG---------FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV  213 (541)
Q Consensus       148 ~~~~--~~~~~d~~g~t~L~~---A~~~~---------~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  213 (541)
                      + |+  +++.+|..|.||||.   |...+         ..+++++|+++|++++.+|..|.||||+|+..++.+++++|+
T Consensus       404 ~-Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI  482 (672)
T PHA02730        404 N-NGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLL  482 (672)
T ss_pred             c-CCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            7 54  689999999999984   33232         235799999999999999999999999999999999999999


Q ss_pred             HcCCCCCCcccCC-CCCCHHHHHHhc--CchHHHHHHHHhhhhc
Q 009183          214 HAGTKQELTAKDK-AGLTPTQLAYDK--GHRQVALYLSNAQHMH  254 (541)
Q Consensus       214 ~~g~~~~~~~~d~-~g~t~l~~A~~~--~~~~i~~~L~~~~~~~  254 (541)
                      ++|+  +++.+|. .|.||++.|+..  ++.+++++|+++++..
T Consensus       483 ~~GA--dIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        483 EYGA--SVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             HCCC--CCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence            9998  7888886 599999999874  7899999999887643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=4e-27  Score=232.74  Aligned_cols=182  Identities=17%  Similarity=0.168  Sum_probs=165.6

Q ss_pred             HHHHcCCHHHHHHHHHhcCCCCc------cCCCCCchHHHHHHH--cCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh
Q 009183           32 SASAYGDFEKLRKFVEEDGASVS------RPDGNGYFALQWAAL--NNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR  103 (541)
Q Consensus        32 ~A~~~g~~~~v~~ll~~~~~~~~------~~d~~g~t~Lh~A~~--~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~  103 (541)
                      .|+..+..|+++.|+. .+++++      .++..+.|+||.|+.  .|+.++|++|+++||+++..  ++.||+|.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s-~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVS-KNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHh-cccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc
Confidence            7888888888877765 588888      788899999999999  89999999999999999885  458999999999


Q ss_pred             CCHHHHHHHHhCCCCCCccc------cCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHH
Q 009183          104 GSIAVADVLVQNGARVEAAD------VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIR  177 (541)
Q Consensus       104 g~~~~v~~Ll~~g~~~~~~d------~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~  177 (541)
                      |+.+++++|+++|++.....      ..+.+++|.|+..++.+++++|++. |++++.+|..|.||||+|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~-GADIN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY-IEDINQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC-cCCcCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999998543222      3478899999999999999999976 9999999999999999999999999999


Q ss_pred             HHHhcCCCCCcccCCCCcHHHHHHHcCC--------HHHHHHHHHcCC
Q 009183          178 LLLFRDASQGRQDKDGCTPLHWAALRGN--------VEACTVLVHAGT  217 (541)
Q Consensus       178 ~Ll~~g~~~~~~d~~g~tpLh~A~~~g~--------~~~v~~Ll~~g~  217 (541)
                      +|+++|++++.+|..|.||||+|+..|+        .+++++|+++|+
T Consensus       239 lLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        239 WLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            9999999999999999999999999984        699999999998

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.6e-27  Score=241.30  Aligned_cols=228  Identities=14%  Similarity=0.121  Sum_probs=180.4

Q ss_pred             CceEEeeccccCCCCCCCCCCcchhhHHHHHH-cCCHHHHHHHHHhcCCC------------------------------
Q 009183            4 SEIEVVSSTEAIPNENQNDNQAAVTDVFSASA-YGDFEKLRKFVEEDGAS------------------------------   52 (541)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~-~g~~~~v~~ll~~~~~~------------------------------   52 (541)
                      ++.|+++.|.+.+++.+..+..+.++++.|+. .|+.|+++.|++. |++                              
T Consensus        83 ~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~-Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  161 (631)
T PHA02792         83 IDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDK-GIPTCSNIQYGYKIIIEQITRAEYYNWDDELDD  161 (631)
T ss_pred             ccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHC-CCCcccccccCcchhhhhcccccccchhhhccc
Confidence            56677888888888777777778888888865 6889999888876 544                              


Q ss_pred             ------CccCCCCCchHHHHHHHcC-------cHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhC--CHHHHHHHHh---
Q 009183           53 ------VSRPDGNGYFALQWAALNN-------FADIAQYIIDHGGDVNATDNNGQTALHWAAVRG--SIAVADVLVQ---  114 (541)
Q Consensus        53 ------~~~~d~~g~t~Lh~A~~~~-------~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~---  114 (541)
                            +|..|..|.||||+|+.++       +.|+++.|+++|++++..|..|.||||+|+...  +.|++++|++   
T Consensus       162 ~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~  241 (631)
T PHA02792        162 YDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNY  241 (631)
T ss_pred             cccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccc
Confidence                  2244566889999999988       789999999999999999888999999998888  5566665543   


Q ss_pred             --------------------------------------------------------------------------------
Q 009183          115 --------------------------------------------------------------------------------  114 (541)
Q Consensus       115 --------------------------------------------------------------------------------  114 (541)
                                                                                                      
T Consensus       242 ~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~i  321 (631)
T PHA02792        242 SGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYI  321 (631)
T ss_pred             cccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccH
Confidence                                                                                            


Q ss_pred             --------CCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCC--CcHHHHHHHhCcH---HHHHHHHh
Q 009183          115 --------NGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEG--RSPLHWAAYKGFA---DTIRLLLF  181 (541)
Q Consensus       115 --------~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g--~t~L~~A~~~~~~---~~v~~Ll~  181 (541)
                              +|++..  .....++++.|+..|+.+++++|+++ |++++.+|..|  .||||.|+.....   +++++|++
T Consensus       322 eiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs  398 (631)
T PHA02792        322 NVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP  398 (631)
T ss_pred             HHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh
Confidence                    233221  11245567888888899999988876 88888888775  5888887776654   35788888


Q ss_pred             cCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHh
Q 009183          182 RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYD  237 (541)
Q Consensus       182 ~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~  237 (541)
                      +|++++.+|..|.||||+|+..++.+++++|+++|+  +++.+|..|.||+++|..
T Consensus       399 ~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GA--DIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        399 YIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGA--DINITTKYGSTCIGICVI  452 (631)
T ss_pred             cCCccccccccCcchHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999987  677889999999999875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=9.7e-27  Score=238.13  Aligned_cols=256  Identities=13%  Similarity=0.068  Sum_probs=204.8

Q ss_pred             eeccccCCCCCCCCCCcchhhHH-HHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHH-cCcHHHHHHHHhCCCCC
Q 009183            9 VSSTEAIPNENQNDNQAAVTDVF-SASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAAL-NNFADIAQYIIDHGGDV   86 (541)
Q Consensus         9 ~~~l~~~~~~~~~~~~~~~~~L~-~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~-~~~~~iv~~Ll~~g~~~   86 (541)
                      +-.+...++.   .+.++.++++ .|+..|++|+++.|+++ |+++|.++..|.||+|+|+. .++.|++++|+++|+++
T Consensus        57 ~~~~~~~~~~---~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~  132 (631)
T PHA02792         57 VILLLSSVDY---KNINDFDIFEYLCSDNIDIELLKLLISK-GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPT  132 (631)
T ss_pred             HHHHHhCCCc---CccCCccHHHHHHHhcccHHHHHHHHHc-CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCc
Confidence            3344444443   3334445775 67788999999999985 99999999999999999976 69999999999999873


Q ss_pred             C------------------------------------CCCCCCchHHHHHHHhC-------CHHHHHHHHhCCCCCCccc
Q 009183           87 N------------------------------------ATDNNGQTALHWAAVRG-------SIAVADVLVQNGARVEAAD  123 (541)
Q Consensus        87 ~------------------------------------~~~~~g~tpL~~A~~~g-------~~~~v~~Ll~~g~~~~~~d  123 (541)
                      +                                    ..+..|.||||+|+..+       +.++++.|+++|++++.+|
T Consensus       133 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d  212 (631)
T PHA02792        133 CSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYT  212 (631)
T ss_pred             ccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccC
Confidence            2                                    23456999999999999       8999999999999999999


Q ss_pred             cCCChHHHHHHHcC--CHHHHHHHHHhcC---------------------CCccc-------------------------
Q 009183          124 VHGYRAVHVAAQYG--QTSFLNHIVAKYH---------------------ADYDA-------------------------  155 (541)
Q Consensus       124 ~~g~t~l~~A~~~g--~~~~v~~Ll~~~~---------------------~~~~~-------------------------  155 (541)
                      ..|.||||+|+.+.  ..++++.|+....                     .++|.                         
T Consensus       213 ~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~  292 (631)
T PHA02792        213 YREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNN  292 (631)
T ss_pred             CCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhh
Confidence            99999999999988  6677777765300                     00010                         


Q ss_pred             ------------------------------------------CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCC
Q 009183          156 ------------------------------------------SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG  193 (541)
Q Consensus       156 ------------------------------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g  193 (541)
                                                                ....+..+++.|+..|+.+++++|+++|++++.+|.+|
T Consensus       293 ~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g  372 (631)
T PHA02792        293 IIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNI  372 (631)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCC
Confidence                                                      00124456889999999999999999999999999875


Q ss_pred             --CcHHHHHHHcCCHH---HHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhccccccccccccccc
Q 009183          194 --CTPLHWAALRGNVE---ACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTS  268 (541)
Q Consensus       194 --~tpLh~A~~~g~~~---~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~  268 (541)
                        .||||.|+.....+   ++++|+++|+  +++.+|..|.||||+|+..++.+++++|.++++...          ...
T Consensus       373 ~~~TpLh~A~~n~~~~v~~IlklLIs~GA--DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN----------~kD  440 (631)
T PHA02792        373 INIMPLFPTLSIHESDVLSILKLCKPYID--DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN----------ITT  440 (631)
T ss_pred             CChhHHHHHHHhccHhHHHHHHHHHhcCC--ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC----------CcC
Confidence              69999988776654   5788999998  788899999999999999999999999999876543          234


Q ss_pred             CCCCchhHHHHH
Q 009183          269 DIGYAPILFSII  280 (541)
Q Consensus       269 ~lg~~~l~~~~i  280 (541)
                      ..|.+|+..+..
T Consensus       441 ~~G~TpL~~A~~  452 (631)
T PHA02792        441 KYGSTCIGICVI  452 (631)
T ss_pred             CCCCCHHHHHHH
Confidence            457788877654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.1e-26  Score=238.33  Aligned_cols=205  Identities=16%  Similarity=0.165  Sum_probs=172.7

Q ss_pred             HHHHHHhcCCCCc-cCCCCCchHHHHHHHcC---cHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhC--CHHHHHHHHhC
Q 009183           42 LRKFVEEDGASVS-RPDGNGYFALQWAALNN---FADIAQYIIDHGGDVNATDNNGQTALHWAAVRG--SIAVADVLVQN  115 (541)
Q Consensus        42 v~~ll~~~~~~~~-~~d~~g~t~Lh~A~~~~---~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~  115 (541)
                      ++..++. -.++| .+|.+|.||||+|+.+|   +.++|++|+++||+++.+|..|.||||+|+..+  +.+++++|+++
T Consensus        23 ~~~~~~~-~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~  101 (672)
T PHA02730         23 IKLEIET-CHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISS  101 (672)
T ss_pred             HHHHHHH-hcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhc
Confidence            4444443 44666 88899999999999997   599999999999999999999999999999977  79999999999


Q ss_pred             CCC--CCccccCCChHHHHHHH--cCCHHHHHHHHHhcCCCcccCCC-----CCCcHHHHHHHhCcHHHHHHHHhcCCCC
Q 009183          116 GAR--VEAADVHGYRAVHVAAQ--YGQTSFLNHIVAKYHADYDASDN-----EGRSPLHWAAYKGFADTIRLLLFRDASQ  186 (541)
Q Consensus       116 g~~--~~~~d~~g~t~l~~A~~--~g~~~~v~~Ll~~~~~~~~~~d~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  186 (541)
                      |++  ++..+..+.+|+|.++.  +++.+++++|++..+.+++....     .|.+|++.|+..++.++|++|+++|+++
T Consensus       102 ~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v  181 (672)
T PHA02730        102 YSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYS  181 (672)
T ss_pred             CCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcc
Confidence            654  47788788999999988  88899999999765778776633     7899999999999999999999999999


Q ss_pred             C-------cccCCCC-cHHHHH------HHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHH--HHhcCchHHHHHHHH
Q 009183          187 G-------RQDKDGC-TPLHWA------ALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQL--AYDKGHRQVALYLSN  249 (541)
Q Consensus       187 ~-------~~d~~g~-tpLh~A------~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~--A~~~~~~~i~~~L~~  249 (541)
                      +       ..|..+. |.||++      ..+++.|++++|+++|+  +++.+|..|.||||+  |...|+.|++++|.+
T Consensus       182 ~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Ga--dIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        182 TGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNV--SIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            5       2344444 455533      45578999999999998  889999999999995  556678999999998

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=1.9e-25  Score=245.33  Aligned_cols=226  Identities=21%  Similarity=0.203  Sum_probs=185.7

Q ss_pred             CCCcchhhHHHHHHcCCHHHHHHHHHhc-CCCCccCCCCCchHHH-HHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 009183           22 DNQAAVTDVFSASAYGDFEKLRKFVEED-GASVSRPDGNGYFALQ-WAALNNFADIAQYIIDHGGDVNATDNNGQTALHW   99 (541)
Q Consensus        22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~Lh-~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~   99 (541)
                      .-..++..++.|++.|+.+.++.++++. +.++|..|..|.|||| .|+.+++.+++++|+++|+    .+..|.||||.
T Consensus        13 ~~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~   88 (743)
T TIGR00870        13 PLSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHA   88 (743)
T ss_pred             CCCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHH
Confidence            3456788999999999999999999753 6889999999999999 8999999999999999987    66789999999


Q ss_pred             HHHhC---CHHHHHHHHhCCCC------CC----ccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCC---------
Q 009183          100 AAVRG---SIAVADVLVQNGAR------VE----AADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD---------  157 (541)
Q Consensus       100 A~~~g---~~~~v~~Ll~~g~~------~~----~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d---------  157 (541)
                      |+..+   ...+++.+.+.+.+      ++    ..+..|.||||+|+..|+.++++.|+++ |++++.++         
T Consensus        89 A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~-GAdv~~~~~~~~~~~~~  167 (743)
T TIGR00870        89 ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQ  167 (743)
T ss_pred             HHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCcCCchhhcCC
Confidence            98722   23344444444422      11    1235699999999999999999999986 88888653         


Q ss_pred             -----CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcC---------CHHHHHHHHHcCCCC-CC-
Q 009183          158 -----NEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRG---------NVEACTVLVHAGTKQ-EL-  221 (541)
Q Consensus       158 -----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g---------~~~~v~~Ll~~g~~~-~~-  221 (541)
                           ..|.||||.|+..|+.+++++|++.|++++.+|..|+||||+|+..+         ...+.+.+++.++.. +. 
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~  247 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSK  247 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChH
Confidence                 35889999999999999999999999999999999999999999987         234556676665531 22 


Q ss_pred             ---cccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          222 ---TAKDKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       222 ---~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                         ..+|.+|.||+++|++.|+.+++++|++.+.
T Consensus       248 el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~  281 (743)
T TIGR00870       248 ELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKY  281 (743)
T ss_pred             hhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHH
Confidence               5679999999999999999999999988543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=2.5e-26  Score=246.50  Aligned_cols=236  Identities=27%  Similarity=0.413  Sum_probs=211.3

Q ss_pred             CceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCC
Q 009183            4 SEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHG   83 (541)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g   83 (541)
                      ++.++++-+.+........+..|.|++|.|+..|.......++.+.+.++|....+|.||||.|+..|+.++++.|++.+
T Consensus       418 ~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~  497 (1143)
T KOG4177|consen  418 GNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGG  497 (1143)
T ss_pred             cCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcC
Confidence            45566666666666777777888999999999995555555666779999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcH
Q 009183           84 GDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSP  163 (541)
Q Consensus        84 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  163 (541)
                      +..+.....+.+++|.|...+....++.++++|++++.++..|+||||.|+.+|+.++|++|+++ |++++.+|+.|+||
T Consensus       498 ~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G~TP  576 (1143)
T KOG4177|consen  498 ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDKLGYTP  576 (1143)
T ss_pred             CccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhC-CccccccCCCCCCh
Confidence            88888888899999999999999999999999999999999999999999999999999999987 99999999999999


Q ss_pred             HHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCcccCCCCCCHHHHHHhcCc
Q 009183          164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ---ELTAKDKAGLTPTQLAYDKGH  240 (541)
Q Consensus       164 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~---~~~~~d~~g~t~l~~A~~~~~  240 (541)
                      ||.||..|+.+++++|+++|+++|..|.+|.||||.|+..|+.++++.|+..+++.   +...++..|.+|.+++.....
T Consensus       577 LH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~~~  656 (1143)
T KOG4177|consen  577 LHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEELDT  656 (1143)
T ss_pred             hhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999998741   145567899999999877543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=1.4e-26  Score=199.09  Aligned_cols=221  Identities=25%  Similarity=0.305  Sum_probs=200.1

Q ss_pred             CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 009183           23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAV  102 (541)
Q Consensus        23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~  102 (541)
                      +..|+..+-.+.++|+-+.....+.-.+..+...|.+|+.++|.|+-.++.+.+..++.+|+..|..+--+.+|+.+++.
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVh  138 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVH  138 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHH
Confidence            44566667788888988888877766666677788899999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhc
Q 009183          103 RGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR  182 (541)
Q Consensus       103 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  182 (541)
                      +.+++.+..+.++  .+|..|+.|.|||.+|+..|+.++|++|++. |++++...+...++|+.|+..|..++|++|+.+
T Consensus       139 ql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lLL~r  215 (296)
T KOG0502|consen  139 QLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELLLTR  215 (296)
T ss_pred             HHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc
Confidence            9999988887775  5678999999999999999999999999976 999999999999999999999999999999999


Q ss_pred             CCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHH
Q 009183          183 DASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLS  248 (541)
Q Consensus       183 g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~  248 (541)
                      +.|+|..|.+|-|||-+|++.++.++++.|++.|+  +++..|..|.+++++|+..|+..+-+.+.
T Consensus       216 ~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA--d~t~e~dsGy~~mdlAValGyr~Vqqvie  279 (296)
T KOG0502|consen  216 EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGA--DVTQEDDSGYWIMDLAVALGYRIVQQVIE  279 (296)
T ss_pred             CCCcceeccCCCceeeeeecCChHHHHHHHHhcCC--CcccccccCCcHHHHHHHhhhHHHHHHHH
Confidence            99999999999999999999999999999999999  78889999999999999999994444443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=2.1e-26  Score=198.04  Aligned_cols=216  Identities=21%  Similarity=0.304  Sum_probs=193.8

Q ss_pred             ccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 009183           11 STEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD   90 (541)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~   90 (541)
                      +..-.+..+.+.+..|...++.|+-.|+.+.++-+|.. +...|..+..+.+|+.+++...+.+.+..+.+.  .+|..|
T Consensus        81 s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN-~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~D  157 (296)
T KOG0502|consen   81 SAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTN-GARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACD  157 (296)
T ss_pred             hhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecc-cccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCcc
Confidence            34455666667777799999999999988888877764 888999999999999999999999888877765  578999


Q ss_pred             CCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHh
Q 009183           91 NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK  170 (541)
Q Consensus        91 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  170 (541)
                      +.|.|||.||+..|++++|++|++.|+|++...+...++|.+|+..|..++|+.|+.+ +.++|..|.+|.|||-+|++-
T Consensus       158 e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r-~vdVNvyDwNGgTpLlyAvrg  236 (296)
T KOG0502|consen  158 EFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTR-EVDVNVYDWNGGTPLLYAVRG  236 (296)
T ss_pred             ccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc-CCCcceeccCCCceeeeeecC
Confidence            9999999999999999999999999999999999999999999999999999999987 999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHH
Q 009183          171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQ  233 (541)
Q Consensus       171 ~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~  233 (541)
                      ++.++++.|++.|++++..|..|++++..|+..|+. +|+..+++.+  ....+|..-++|+|
T Consensus       237 nhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~--lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  237 NHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHA--LKLCQDSEKRTPLH  296 (296)
T ss_pred             ChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHH--HHHhhcccCCCCCC
Confidence            999999999999999999999999999999999997 8888888765  55566776677653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=8.5e-25  Score=241.37  Aligned_cols=178  Identities=21%  Similarity=0.223  Sum_probs=163.5

Q ss_pred             CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHc
Q 009183           57 DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY  136 (541)
Q Consensus        57 d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~  136 (541)
                      +.++.++||.||..|+.++++.|+++|+++|..|..|.||||+|+..|+.++++.|+++|++++.+|.+|.||||.|+..
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183          137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  216 (541)
                      |+.++++.|++. +...+  ...+.++||.|+..|+.++++.|+++|++++.+|.+|.||||+|+..|+.+++++|+++|
T Consensus       602 g~~~iv~~L~~~-~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G  678 (823)
T PLN03192        602 KHHKIFRILYHF-ASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNG  678 (823)
T ss_pred             CCHHHHHHHHhc-CcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence            999999999864 43333  345779999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCCCC-CCHHHHHHhcC
Q 009183          217 TKQELTAKDKAG-LTPTQLAYDKG  239 (541)
Q Consensus       217 ~~~~~~~~d~~g-~t~l~~A~~~~  239 (541)
                      +  +++.+|..| .||++++....
T Consensus       679 A--dv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        679 A--DVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             C--CCCCCCCCCCCCHHHHHHHHH
Confidence            8  677788888 99998876543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=4.4e-24  Score=235.73  Aligned_cols=179  Identities=19%  Similarity=0.290  Sum_probs=165.1

Q ss_pred             CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 009183           22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA  101 (541)
Q Consensus        22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~  101 (541)
                      .+....++|+.||..|+.+.++.+++. |.++|..|.+|.||||+||..|+.+++++|+++|++++.+|.+|.||||+|+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            344567889999999999999999865 9999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh
Q 009183          102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF  181 (541)
Q Consensus       102 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  181 (541)
                      ..|+.+++++|++.++..+  ...+.++||.|+..|+.++++.|++. |++++.+|.+|.||||+|+..|+.+++++|++
T Consensus       600 ~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        600 SAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             HhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            9999999999999887654  34567999999999999999999976 99999999999999999999999999999999


Q ss_pred             cCCCCCcccCCC-CcHHHHHHHcC
Q 009183          182 RDASQGRQDKDG-CTPLHWAALRG  204 (541)
Q Consensus       182 ~g~~~~~~d~~g-~tpLh~A~~~g  204 (541)
                      +|++++..|..| .||++.+....
T Consensus       677 ~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        677 NGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             cCCCCCCCCCCCCCCHHHHHHHHH
Confidence            999999999988 99998885543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=1.6e-24  Score=217.42  Aligned_cols=229  Identities=22%  Similarity=0.265  Sum_probs=201.8

Q ss_pred             CCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCch
Q 009183           16 PNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQT   95 (541)
Q Consensus        16 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t   95 (541)
                      +.+...+|..+.|.||.|+.+|+.++++.|++ +.+-++..|..|.+|||+|+.+|+.+++|+++.++..+|..+..|.|
T Consensus        39 sds~n~qd~~gfTalhha~Lng~~~is~llle-~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~t  117 (854)
T KOG0507|consen   39 SDSHNLQDYSGFTLLHHAVLNGQNQISKLLLD-YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENET  117 (854)
T ss_pred             CccccccCccchhHHHHHHhcCchHHHHHHhc-chhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcC
Confidence            34556678899999999999999999987765 47788888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCC--------cccCCCCCCcHHHHH
Q 009183           96 ALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD--------YDASDNEGRSPLHWA  167 (541)
Q Consensus        96 pL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~--------~~~~d~~g~t~L~~A  167 (541)
                      |||.|++.|+.+++.+|+++|+|+-.+|+.+.|++-.|++.|..++++.|+++ ...        -..++-.+.+|+|.|
T Consensus       118 plhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHla  196 (854)
T KOG0507|consen  118 PLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLA  196 (854)
T ss_pred             ccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchh
Confidence            99999999999999999999999999999999999999999999999999876 211        223456677999999


Q ss_pred             HHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhc---CchHHH
Q 009183          168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK---GHRQVA  244 (541)
Q Consensus       168 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~---~~~~i~  244 (541)
                      +++|+.++++.|++.|.++|.+...| |+||-|+..|..++|++|++.|.  +...+|.+|+|+|++-...   ...+++
T Consensus       197 akngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gi--n~h~~n~~~qtaldil~d~~~~~~~ei~  273 (854)
T KOG0507|consen  197 AKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGI--NTHIKNQHGQTALDIIIDLQENRRYEIA  273 (854)
T ss_pred             hhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhcc--ccccccccchHHHHHHHhcchhhhhhhh
Confidence            99999999999999999999887655 79999999999999999999997  7788999999999987654   344555


Q ss_pred             HHHHH
Q 009183          245 LYLSN  249 (541)
Q Consensus       245 ~~L~~  249 (541)
                      -++..
T Consensus       274 ga~~~  278 (854)
T KOG0507|consen  274 GAVKN  278 (854)
T ss_pred             hhhhc
Confidence            55544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=1.8e-24  Score=210.17  Aligned_cols=206  Identities=33%  Similarity=0.497  Sum_probs=182.0

Q ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHH
Q 009183           28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA  107 (541)
Q Consensus        28 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~  107 (541)
                      -.+..|+..|+.+.++.++.. +.+++..+.+|.|+||-||...+.+||++|+++|++||..|..++||||.|+..|++.
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~-ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR-GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc-CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence            347789999999999999976 6888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCccccCCChHHHHHHHcCC--------------H-------------HHHHHHHHhcCCCcccCCCCC
Q 009183          108 VADVLVQNGARVEAADVHGYRAVHVAAQYGQ--------------T-------------SFLNHIVAKYHADYDASDNEG  160 (541)
Q Consensus       108 ~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~--------------~-------------~~v~~Ll~~~~~~~~~~d~~g  160 (541)
                      ++++|+++|+++...+..|..|+..+...-.              .             ++-.++-  .|...+..+..|
T Consensus       121 i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~--~G~~~d~~~~rG  198 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN--AGAELDARHARG  198 (527)
T ss_pred             HHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh--cccccccccccc
Confidence            9999999999998888777766654421111              1             1122222  477888888889


Q ss_pred             CcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhc
Q 009183          161 RSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK  238 (541)
Q Consensus       161 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~  238 (541)
                      .|.||.|+.+|..++.++|++.|.+++.+|.+|+||||.|+.-|+.+++++|+++|+  +++.+...|.||+++|.+.
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga--~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGA--DMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhc--ccchhhhcCCCCccchhhh
Confidence            999999999999999999999999999999999999999999999999999999998  7888999999999999764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=3e-24  Score=215.60  Aligned_cols=222  Identities=24%  Similarity=0.330  Sum_probs=199.5

Q ss_pred             hhhHHHHHHcCCHHHHHHHHHhcC------------CCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCc
Q 009183           27 VTDVFSASAYGDFEKLRKFVEEDG------------ASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQ   94 (541)
Q Consensus        27 ~~~L~~A~~~g~~~~v~~ll~~~~------------~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~   94 (541)
                      .+-+..|++.|+.+.+..+|+..+            ..+|..|.+|.|+||.|+.+|+.+++++|+++.+-++..+..|.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~   83 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGI   83 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCc
Confidence            355889999999999999997532            45788899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHH
Q 009183           95 TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFAD  174 (541)
Q Consensus        95 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~  174 (541)
                      +|||+|+..|+.+++++++..+..++..+.+|.+|||.|++.||.+++.+|+.+ +.+.-..|.++.|+|..|++.|+.+
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~-~adp~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKK-NADPFIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhc-CCCccccCcccccHHHHHHHhhhhH
Confidence            999999999999999999999999999999999999999999999999999976 9999999999999999999999999


Q ss_pred             HHHHHHhcCCCC--------CcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHH
Q 009183          175 TIRLLLFRDASQ--------GRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALY  246 (541)
Q Consensus       175 ~v~~Ll~~g~~~--------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~  246 (541)
                      +++.|++...+.        ..++-.+.+|||.|+++|+.++++.|+++|.  +++.....| |+||.|+..|..+++.+
T Consensus       163 Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~--din~~t~~g-talheaalcgk~evvr~  239 (854)
T KOG0507|consen  163 VVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF--DINYTTEDG-TALHEAALCGKAEVVRF  239 (854)
T ss_pred             HHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC--Ccccccccc-hhhhhHhhcCcchhhhH
Confidence            999999763332        2344568899999999999999999999998  666555555 89999999999999999


Q ss_pred             HHHhhh
Q 009183          247 LSNAQH  252 (541)
Q Consensus       247 L~~~~~  252 (541)
                      |++.+.
T Consensus       240 ll~~gi  245 (854)
T KOG0507|consen  240 LLEIGI  245 (854)
T ss_pred             HHhhcc
Confidence            987653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=1.3e-22  Score=222.99  Aligned_cols=207  Identities=20%  Similarity=0.201  Sum_probs=161.8

Q ss_pred             CceEEeeccccC--CCCCCCCCCcchhhHH-HHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcC---cHHHHH
Q 009183            4 SEIEVVSSTEAI--PNENQNDNQAAVTDVF-SASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNN---FADIAQ   77 (541)
Q Consensus         4 ~~~~~~~~l~~~--~~~~~~~~~~~~~~L~-~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~---~~~iv~   77 (541)
                      ++++.++.+.+.  ..+.+..|..|.|||| .|+.+++.++++.|++. +.    .+..|.||||.|+.++   ..++++
T Consensus        28 g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~----~~~~G~T~Lh~A~~~~~~~v~~ll~  102 (743)
T TIGR00870        28 GDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNL-SC----RGAVGDTLLHAISLEYVDAVEAILL  102 (743)
T ss_pred             CCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhC-CC----CCCcChHHHHHHHhccHHHHHHHHH
Confidence            455555555555  4555567788999999 77777777777766654 54    6788999999999732   234445


Q ss_pred             HHHhCCCC------CCC----CCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccc--------------cCCChHHHHH
Q 009183           78 YIIDHGGD------VNA----TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD--------------VHGYRAVHVA  133 (541)
Q Consensus        78 ~Ll~~g~~------~~~----~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d--------------~~g~t~l~~A  133 (541)
                      .+.+.+.+      ++.    ....|.||||+|+..|+.++++.|+++|++++.++              ..|.+|||.|
T Consensus       103 ~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~A  182 (743)
T TIGR00870       103 HLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAA  182 (743)
T ss_pred             HHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHH
Confidence            55544432      111    22469999999999999999999999999998753              2589999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhC---------cHHHHHHHHhcCCCC-------CcccCCCCcHH
Q 009183          134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKG---------FADTIRLLLFRDASQ-------GRQDKDGCTPL  197 (541)
Q Consensus       134 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~---------~~~~v~~Ll~~g~~~-------~~~d~~g~tpL  197 (541)
                      +..|+.++++.|++. |++++.+|..|.||||+|+..+         ..++.++++..++..       +..|.+|.|||
T Consensus       183 a~~~~~~iv~lLl~~-gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL  261 (743)
T TIGR00870       183 ACLGSPSIVALLSED-PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPL  261 (743)
T ss_pred             HHhCCHHHHHHHhcC-CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCch
Confidence            999999999999976 8999999999999999999986         234566676665554       56788999999


Q ss_pred             HHHHHcCCHHHHHHHHHcC
Q 009183          198 HWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       198 h~A~~~g~~~~v~~Ll~~g  216 (541)
                      |+|+..|+.+++++|++.+
T Consensus       262 ~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       262 KLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhhhhcCCccHHHHHHHHH
Confidence            9999999999999999854

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=2.5e-22  Score=178.03  Aligned_cols=145  Identities=16%  Similarity=0.156  Sum_probs=98.9

Q ss_pred             CCCCccCCCCCchHHHHHHHcCcH----HHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHH---HHHHHHhCCCCCCcc
Q 009183           50 GASVSRPDGNGYFALQWAALNNFA----DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA---VADVLVQNGARVEAA  122 (541)
Q Consensus        50 ~~~~~~~d~~g~t~Lh~A~~~~~~----~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~---~v~~Ll~~g~~~~~~  122 (541)
                      +++++..+.++.++||.||..|+.    +++++|.+.|++++.+|..|.||||+|+..|+.+   ++++|+++|++++.+
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~   89 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAR   89 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCC
Confidence            455666666677777777777776    4555666777777777777777777777776643   366777777777776


Q ss_pred             c-cCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCC
Q 009183          123 D-VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGC  194 (541)
Q Consensus       123 d-~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  194 (541)
                      | ..|.||||+|+..|+.+++++|+.+.+++++.+|..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            6 36777777777777777777666544666666676777777777777777777777777777666665543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.2e-22  Score=187.74  Aligned_cols=163  Identities=30%  Similarity=0.464  Sum_probs=146.0

Q ss_pred             CCCCCCCCchHHHHHHHhCCHHHHHHHHhCC-CCCCccccCCChHHHHHHHc-----CCHHHHHHHHHhcCCCcccC-CC
Q 009183           86 VNATDNNGQTALHWAAVRGSIAVADVLVQNG-ARVEAADVHGYRAVHVAAQY-----GQTSFLNHIVAKYHADYDAS-DN  158 (541)
Q Consensus        86 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~l~~A~~~-----g~~~~v~~Ll~~~~~~~~~~-d~  158 (541)
                      +|..|.+|+|+||||+..+|.++|+.|++.| ++++..++.|+||+++|+..     .+.++|..|...  .++|.+ ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m--gnVNaKAsQ  338 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM--GDVNAKASQ  338 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc--cCcchhhhh
Confidence            6888999999999999999999999999998 89999999999999998752     345778888864  455655 45


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhc
Q 009183          159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK  238 (541)
Q Consensus       159 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~  238 (541)
                      .|+|+||+|+..|+.++|+.|+.-|+|+|.+|.+|.|+|+.|+.+|+.|++++||.... .+....|.+|.|+|.+|.+.
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~-cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS-CDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCc-ccceeecCCCchhhhhHHhc
Confidence            68999999999999999999999999999999999999999999999999999997654 58889999999999999999


Q ss_pred             CchHHHHHHHHhh
Q 009183          239 GHRQVALYLSNAQ  251 (541)
Q Consensus       239 ~~~~i~~~L~~~~  251 (541)
                      ||.||.-+|-.+-
T Consensus       418 gh~eIa~mlYa~~  430 (452)
T KOG0514|consen  418 GHREIAVMLYAHM  430 (452)
T ss_pred             CchHHHHHHHHHH
Confidence            9999998885543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.4e-21  Score=173.15  Aligned_cols=146  Identities=21%  Similarity=0.226  Sum_probs=128.0

Q ss_pred             CCCCCCCCCCCCchHHHHHHHhCCH----HHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHH---HHHHHHhcCCCcc
Q 009183           82 HGGDVNATDNNGQTALHWAAVRGSI----AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSF---LNHIVAKYHADYD  154 (541)
Q Consensus        82 ~g~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~---v~~Ll~~~~~~~~  154 (541)
                      +|++++..+.++.+++|.||+.|+.    ++++.|.+.|++++.+|..|.||||+|+..|+.+.   +++|++. |++++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-Gadin   87 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNM-GADIN   87 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHc-CCCCC
Confidence            5677777888889999999999998    66778888999999999999999999999988654   6778765 89999


Q ss_pred             cCC-CCCCcHHHHHHHhCcHHHHHHHHh-cCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCC
Q 009183          155 ASD-NEGRSPLHWAAYKGFADTIRLLLF-RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT  230 (541)
Q Consensus       155 ~~d-~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t  230 (541)
                      .+| ..|.||||+|+..++.+++++|+. .|++++.+|..|.||||+|+..++.+++++|+++|+  +.+.++..|.+
T Consensus        88 ~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga--~~~~~~~~~~~  163 (166)
T PHA02743         88 ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGA--VCDDPLSIGLS  163 (166)
T ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCCcccCCcc
Confidence            998 589999999999999999999995 799999999999999999999999999999999998  66667766653

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=9.1e-22  Score=181.88  Aligned_cols=162  Identities=29%  Similarity=0.408  Sum_probs=144.8

Q ss_pred             CCccCCCCCchHHHHHHHcCcHHHHHHHHhCC-CCCCCCCCCCchHHHHHHHh-----CCHHHHHHHHhCCCCCCccc-c
Q 009183           52 SVSRPDGNGYFALQWAALNNFADIAQYIIDHG-GDVNATDNNGQTALHWAAVR-----GSIAVADVLVQNGARVEAAD-V  124 (541)
Q Consensus        52 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g-~~~~~~~~~g~tpL~~A~~~-----g~~~~v~~Ll~~g~~~~~~d-~  124 (541)
                      -+|..|.+|+|+||||+.+.++++|+.|++.| +++|..+..|+||+++|+..     .+.++|+.|.+.| |+|++- .
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ  338 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ  338 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh
Confidence            46778999999999999999999999999887 58999999999999998864     4688999999886 666654 5


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhc-CCCCCcccCCCCcHHHHHHHc
Q 009183          125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR-DASQGRQDKDGCTPLHWAALR  203 (541)
Q Consensus       125 ~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~  203 (541)
                      .|+|+|++|+.+|+.++|+.|+. +|+++|.+|.+|.|+||.||..|+.+++++|+.. ++|...+|.+|.|+|.+|...
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLa-cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLA-CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHH-ccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            79999999999999999999996 4999999999999999999999999999999975 789999999999999999999


Q ss_pred             CCHHHHHHHHHc
Q 009183          204 GNVEACTVLVHA  215 (541)
Q Consensus       204 g~~~~v~~Ll~~  215 (541)
                      |+.||.-+|-.+
T Consensus       418 gh~eIa~mlYa~  429 (452)
T KOG0514|consen  418 GHREIAVMLYAH  429 (452)
T ss_pred             CchHHHHHHHHH
Confidence            999998777543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=2.2e-21  Score=161.03  Aligned_cols=147  Identities=22%  Similarity=0.276  Sum_probs=133.0

Q ss_pred             cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhC
Q 009183           25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRG  104 (541)
Q Consensus        25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g  104 (541)
                      +....+..|+..+.+..|+.||++....+|.+|.+|+||||.|+.+|+.+||+.|+.+|++++++...|+||||-||.=.
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence            34456789999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCH-HHHHHHHHhcCCCcccCCCCCCcHHHHHHHhC
Q 009183          105 SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT-SFLNHIVAKYHADYDASDNEGRSPLHWAAYKG  171 (541)
Q Consensus       105 ~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~  171 (541)
                      +.+++..|+++|+|+++......||||.|+...+. ..+.+|+...++.+-.++..+.||+..|-+.+
T Consensus       142 N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             chhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999999999999999999999999999986654 56777777767888888888899999987765

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=5.9e-21  Score=170.10  Aligned_cols=130  Identities=23%  Similarity=0.296  Sum_probs=78.6

Q ss_pred             ccCCCCCchHHHHHHHcCcHHHHHHHHh------CCCCCCCCCCCCchHHHHHHHhCC----HHHHHHHHhCCCCCCccc
Q 009183           54 SRPDGNGYFALQWAALNNFADIAQYIID------HGGDVNATDNNGQTALHWAAVRGS----IAVADVLVQNGARVEAAD  123 (541)
Q Consensus        54 ~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~------~g~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~g~~~~~~d  123 (541)
                      +.+|..|.||||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|++.|++++.++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            4456667777777777777777776642      245566666666666666666666    355666666666666555


Q ss_pred             c-CCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 009183          124 V-HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD  183 (541)
Q Consensus       124 ~-~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  183 (541)
                      . .|.||||+|+..++.+++++|+...+++++.+|..|.||||.|+..++.+++++|++.+
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            3 56666666666666666665554335555555555555555555555555555555543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.5e-20  Score=179.36  Aligned_cols=155  Identities=17%  Similarity=0.122  Sum_probs=132.3

Q ss_pred             ccCCCCCch-HHHHHHHcCcHHHHHHHHhCCCCCCCCC----CCCchHHHHHHHhCCHHHHHHHHhCCCCCCcc-ccCCC
Q 009183           54 SRPDGNGYF-ALQWAALNNFADIAQYIIDHGGDVNATD----NNGQTALHWAAVRGSIAVADVLVQNGARVEAA-DVHGY  127 (541)
Q Consensus        54 ~~~d~~g~t-~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~----~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~  127 (541)
                      ..+|..|.| +||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..|+.+++++|+++|++++.+ +..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            445667765 5677777899999999999999999874    58999999999999999999999999999986 46799


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHH
Q 009183          128 RAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE  207 (541)
Q Consensus       128 t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~  207 (541)
                      ||||.|+..|+.+++++|+.. |++++.+|..|.||||+|+..++.+++..+.  |.   ..+..+.+|++.+   ++.+
T Consensus       106 TpLh~Aa~~~~~eivklLL~~-GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~---~n~e  176 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSY-GADINIQTNDMVTPIELALMICNNFLAFMIC--DN---EISNFYKHPKKIL---INFD  176 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CC---cccccccChhhhh---ccHH
Confidence            999999999999999999976 9999999999999999999988888776554  32   2456678898875   4789


Q ss_pred             HHHHHHHcCC
Q 009183          208 ACTVLVHAGT  217 (541)
Q Consensus       208 ~v~~Ll~~g~  217 (541)
                      +++.|+.++.
T Consensus       177 i~~~Lish~v  186 (300)
T PHA02884        177 ILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=4.7e-20  Score=164.30  Aligned_cols=129  Identities=26%  Similarity=0.271  Sum_probs=77.5

Q ss_pred             cccCCChHHHHHHHcCCHHHHHHHHHh-----cCCCcccCCCCCCcHHHHHHHhCc----HHHHHHHHhcCCCCCcccC-
Q 009183          122 ADVHGYRAVHVAAQYGQTSFLNHIVAK-----YHADYDASDNEGRSPLHWAAYKGF----ADTIRLLLFRDASQGRQDK-  191 (541)
Q Consensus       122 ~d~~g~t~l~~A~~~g~~~~v~~Ll~~-----~~~~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~d~-  191 (541)
                      +|..|.||||.|+..|+.++++.|+..     .+.+++.+|..|.||||+|+..|+    .+++++|+++|++++.++. 
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~   96 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML   96 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC
Confidence            344455555555555555555544321     134555566666666666666665    3566666666666666664 


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          192 DGCTPLHWAALRGNVEACTVLVH-AGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       192 ~g~tpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      +|.||||+|+..++.+++++|+. .|+  +++.+|.+|.|||++|...++.+++++|.+..+
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~--~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGI--DLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCC--CCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            56667776666666666666665 354  555666666667776666666666666666543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.83  E-value=2e-21  Score=200.81  Aligned_cols=225  Identities=26%  Similarity=0.335  Sum_probs=142.3

Q ss_pred             cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCC-CCCCchHHHHHHHh
Q 009183           25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT-DNNGQTALHWAAVR  103 (541)
Q Consensus        25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~-~~~g~tpL~~A~~~  103 (541)
                      ...++|-.|++.|+.|.+..++.+ |+++.-+|+.|.+||.+|+..||..+|+.|+++.++++.. |..+.|+|-+||..
T Consensus       756 n~~t~LT~acaggh~e~vellv~r-ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVR-GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHh-cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence            345666666666666666655544 6666666666666666666666666666666666666654 34566666666666


Q ss_pred             CCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccC--CCCCCcHHHHHHHhCcHHHHHHHHh
Q 009183          104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS--DNEGRSPLHWAAYKGFADTIRLLLF  181 (541)
Q Consensus       104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~  181 (541)
                      |+.+++++|+..|++-..++...+|||.+|...|..+++..|+.. |..++.+  .+.|-+||+.|...|+...++.|++
T Consensus       835 gr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~-GseInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSS-GSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             CcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhc-ccccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            666666666666666666666666666666666666666666654 5555444  3445566666666666666666666


Q ss_pred             cCCCCCcc-cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhh
Q 009183          182 RDASQGRQ-DKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHM  253 (541)
Q Consensus       182 ~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~  253 (541)
                      .|.|+|.+ ..+-+|+|-+|+..|+.+++.+||.+.+  +...+-+.|.|||+-++..|..|+-.+|+.++++
T Consensus       914 ~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~a--nvehRaktgltplme~AsgGyvdvg~~li~~gad  984 (2131)
T KOG4369|consen  914 PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQA--NVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD  984 (2131)
T ss_pred             ccchhccccccccccceeeccccCcchHHHHHHHHhh--hhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence            66666643 2234566666666666666666666554  4455555666666666666666666666665554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=2.8e-20  Score=163.45  Aligned_cols=95  Identities=15%  Similarity=0.229  Sum_probs=38.7

Q ss_pred             CCCCchHHHHHHHhCCH---HHHHHHHhCCCCCCccc-cCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHH
Q 009183           90 DNNGQTALHWAAVRGSI---AVADVLVQNGARVEAAD-VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLH  165 (541)
Q Consensus        90 ~~~g~tpL~~A~~~g~~---~~v~~Ll~~g~~~~~~d-~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~  165 (541)
                      |.+|.||||+|+..|+.   +++++|++.|++++.+| ..|.||||+|+..|+.+++++|+.+.+++++.+|..|.||||
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~  131 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYY  131 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHH
Confidence            33444444444444433   23344444444444443 234444444444444444444433223333333444444444


Q ss_pred             HHHHhCcHHHHHHHHhcCC
Q 009183          166 WAAYKGFADTIRLLLFRDA  184 (541)
Q Consensus       166 ~A~~~~~~~~v~~Ll~~g~  184 (541)
                      +|+..|+.+++++|+++|+
T Consensus       132 ~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736        132 VACERHDAKMMNILRAKGA  150 (154)
T ss_pred             HHHHcCCHHHHHHHHHcCC
Confidence            4444444444444443333

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=2.8e-19  Score=170.67  Aligned_cols=156  Identities=15%  Similarity=0.092  Sum_probs=134.3

Q ss_pred             CCCCCCCCch-HHHHHHHhCCHHHHHHHHhCCCCCCccc----cCCChHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCC
Q 009183           86 VNATDNNGQT-ALHWAAVRGSIAVADVLVQNGARVEAAD----VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS-DNE  159 (541)
Q Consensus        86 ~~~~~~~g~t-pL~~A~~~g~~~~v~~Ll~~g~~~~~~d----~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~  159 (541)
                      +..+|..+.| +||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|++. |++++.+ +..
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~-GADVN~~~~~~  103 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY-GADVNRYAEEA  103 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcCcccCCC
Confidence            3456666655 6677788899999999999999999874    5899999999999999999999976 9999986 467


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcC
Q 009183          160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKG  239 (541)
Q Consensus       160 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~  239 (541)
                      |.||||.|+..++.+++++|+++|++++.+|..|.||||+|+..++.+++..+.  |.     ..+..+.+|..++   +
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~---~  173 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DN-----EISNFYKHPKKIL---I  173 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CC-----cccccccChhhhh---c
Confidence            999999999999999999999999999999999999999999999998876654  32     2466778888876   4


Q ss_pred             chHHHHHHHHhhh
Q 009183          240 HRQVALYLSNAQH  252 (541)
Q Consensus       240 ~~~i~~~L~~~~~  252 (541)
                      +.+++++|.++..
T Consensus       174 n~ei~~~Lish~v  186 (300)
T PHA02884        174 NFDILKILVSHFI  186 (300)
T ss_pred             cHHHHHHHHHHHH
Confidence            6789999888765

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.82  E-value=4.2e-19  Score=181.33  Aligned_cols=214  Identities=23%  Similarity=0.314  Sum_probs=170.3

Q ss_pred             hhHHHHHHcCCHHHHHHHHHhc--------CCCCccCCCCCchHHHHHHHc---CcHHHHHHHHhCCCC-CCC----CCC
Q 009183           28 TDVFSASAYGDFEKLRKFVEED--------GASVSRPDGNGYFALQWAALN---NFADIAQYIIDHGGD-VNA----TDN   91 (541)
Q Consensus        28 ~~L~~A~~~g~~~~v~~ll~~~--------~~~~~~~d~~g~t~Lh~A~~~---~~~~iv~~Ll~~g~~-~~~----~~~   91 (541)
                      .++..|...+..+.+..++...        ..+++.+...|.|+||.|..+   ++-++++.|++.-.+ +|.    ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            6788999999998888877653        267888899999999999984   456899999986432 221    123


Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhC
Q 009183           92 NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKG  171 (541)
Q Consensus        92 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~  171 (541)
                      .|+||||+|+.+.+.++|++|++.|||++++-...   ...+-. ++.  .+    + ..++.-.-..|..||.+||..+
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~---FF~~~d-qk~--~r----k-~T~Y~G~~YfGEyPLSfAAC~n  251 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGA---FFCPDD-QKA--SR----K-STNYTGYFYFGEYPLSFAACTN  251 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhcc---ccCccc-ccc--cc----c-ccCCcceeeeccCchHHHHHcC
Confidence            69999999999999999999999999997653210   000000 000  00    1 2223333456889999999999


Q ss_pred             cHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183          172 FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ  251 (541)
Q Consensus       172 ~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~  251 (541)
                      +.+++++|+++|+|++.+|..|+|.||.-+..-..++.+.++++|++.....+|++|.|||.+|+..|+.+|.+.+++..
T Consensus       252 q~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  252 QPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERR  331 (782)
T ss_pred             CHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999996447889999999999999999999999999875


Q ss_pred             h
Q 009183          252 H  252 (541)
Q Consensus       252 ~  252 (541)
                      .
T Consensus       332 k  332 (782)
T KOG3676|consen  332 K  332 (782)
T ss_pred             c
Confidence            3

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.1e-19  Score=159.64  Aligned_cols=128  Identities=23%  Similarity=0.293  Sum_probs=81.5

Q ss_pred             CCCCCCchHHHHHHHhCCHHHHHHHHhCCC--C-----CCccccCCChHHHHHHHcCCHH---HHHHHHHhcCCCcccCC
Q 009183           88 ATDNNGQTALHWAAVRGSIAVADVLVQNGA--R-----VEAADVHGYRAVHVAAQYGQTS---FLNHIVAKYHADYDASD  157 (541)
Q Consensus        88 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~--~-----~~~~d~~g~t~l~~A~~~g~~~---~v~~Ll~~~~~~~~~~d  157 (541)
                      .+|.+|.||||+|++.|+.  ++++...+.  +     +..+|..|.||||+|+..|+.+   +++.|++. |++++.+|
T Consensus        12 ~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-gadin~~~   88 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW-GADINGKE   88 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc-CCCccccC
Confidence            3445566666666666652  222222111  1     1234667777777777777653   45556654 67777776


Q ss_pred             -CCCCcHHHHHHHhCcHHHHHHHHh-cCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183          158 -NEGRSPLHWAAYKGFADTIRLLLF-RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK  218 (541)
Q Consensus       158 -~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  218 (541)
                       ..|.||||+|+..++.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             367777777777777777777776 4777777777777777777777777777777777763

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.81  E-value=2.3e-20  Score=193.02  Aligned_cols=249  Identities=17%  Similarity=0.237  Sum_probs=223.4

Q ss_pred             CCceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC
Q 009183            3 SSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH   82 (541)
Q Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~   82 (541)
                      .++.|+..-+...+.+...++..|.+||+.|+-.|+..+|+.|+..+-..-...|..+.|+|-+||..|+.++|++|+..
T Consensus       767 ggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~  846 (2131)
T KOG4369|consen  767 GGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNA  846 (2131)
T ss_pred             CccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHh
Confidence            35566666777778899999999999999999999999999999764433445688999999999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccc--cCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCC-CC
Q 009183           83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD--VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD-NE  159 (541)
Q Consensus        83 g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d--~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~  159 (541)
                      |++-..++-..+|||-.|...|.+++++.|+.+|+.++.+.  +-|..||..|.++||.+.++.|++. |.++|..- .+
T Consensus       847 gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~-gsdiNaqIeTN  925 (2131)
T KOG4369|consen  847 GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQP-GSDINAQIETN  925 (2131)
T ss_pred             hccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcc-cchhccccccc
Confidence            99999999889999999999999999999999999998876  5688999999999999999999987 88888654 34


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcC
Q 009183          160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKG  239 (541)
Q Consensus       160 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~  239 (541)
                      -+|+|-+|+..|+.+++.+|+.+.+++..+-..|.|||+-++..|..|+-++|+.+|++.+....-....|+|.+++..|
T Consensus       926 rnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kG 1005 (2131)
T KOG4369|consen  926 RNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKG 1005 (2131)
T ss_pred             cccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCC
Confidence            57999999999999999999999999999999999999999999999999999999998777777777789999999999


Q ss_pred             chHHHHHHHHhhh
Q 009183          240 HRQVALYLSNAQH  252 (541)
Q Consensus       240 ~~~i~~~L~~~~~  252 (541)
                      |...+..|++..+
T Consensus      1006 h~kfv~~lln~~a 1018 (2131)
T KOG4369|consen 1006 HTKFVPKLLNGDA 1018 (2131)
T ss_pred             chhhhHHhhCCcc
Confidence            9999999987544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=8.9e-19  Score=145.66  Aligned_cols=142  Identities=27%  Similarity=0.317  Sum_probs=101.0

Q ss_pred             HHHHHHHhCCHHHHHHHHhCCCC-CCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHH
Q 009183           96 ALHWAAVRGSIAVADVLVQNGAR-VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFAD  174 (541)
Q Consensus        96 pL~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~  174 (541)
                      -+.+|+..+.+..|+.|++..++ +|.+|..|+||||-|+.+|+.++++.|+.. |++.+.+...|.||||.||.-++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcccchh
Confidence            34567777777777777665543 567777777777777777777777777754 7777777777777777777777788


Q ss_pred             HHHHHHhcCCCCCcccCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcC
Q 009183          175 TIRLLLFRDASQGRQDKDGCTPLHWAALRGNV-EACTVLVHAGTKQELTAKDKAGLTPTQLAYDKG  239 (541)
Q Consensus       175 ~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~-~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~  239 (541)
                      ++..|+++|+|+|.+.....||||.|+...+. ..+.+|+.... .....++..+.||+++|.+.+
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dry-i~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRY-IHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccc-cChhhhcCccchHHHHHHHhh
Confidence            88888888888888877788888888876554 44555554322 355667778888888887664

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=1.4e-19  Score=176.30  Aligned_cols=191  Identities=28%  Similarity=0.369  Sum_probs=162.3

Q ss_pred             ccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 009183           11 STEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD   90 (541)
Q Consensus        11 ~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~   90 (541)
                      .+.......+..+.+|.|+||.++...+.++|+.+++. ++++|..|.+|+||||.|+..|+.+++++|+++|+++...+
T Consensus        58 ~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avN  136 (527)
T KOG0505|consen   58 KLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVN  136 (527)
T ss_pred             HHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhcc
Confidence            33444455577888999999999999999999998875 99999999999999999999999999999999999987777


Q ss_pred             CCCchHHHHHHH-------------hC-CH------------HHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHH
Q 009183           91 NNGQTALHWAAV-------------RG-SI------------AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNH  144 (541)
Q Consensus        91 ~~g~tpL~~A~~-------------~g-~~------------~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~  144 (541)
                      .+|..|+..|-.             .| .+            +=++..+..|.+.+.++..|-|.||.|+.+|..++.+.
T Consensus       137 sdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~l  216 (527)
T KOG0505|consen  137 SDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAAL  216 (527)
T ss_pred             CCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHH
Confidence            666666533221             11 11            11223344788999999889999999999999999999


Q ss_pred             HHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHc
Q 009183          145 IVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALR  203 (541)
Q Consensus       145 Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~  203 (541)
                      |++. +.+++.+|.+|.||||.|+.-|..++.++|+++|++++.....|.||+..|...
T Consensus       217 Ll~a-g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  217 LLQA-GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHHh-ccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            9876 999999999999999999999999999999999999999999999999998753

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=4.5e-19  Score=159.04  Aligned_cols=159  Identities=23%  Similarity=0.381  Sum_probs=137.0

Q ss_pred             hHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHH
Q 009183           29 DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV  108 (541)
Q Consensus        29 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~  108 (541)
                      .++.-++.||.-.|+..|++...|.|.-|..|.+||||||+.|+..+++.|+++|+.+|..+....||||+|+..|+-++
T Consensus         3 dif~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdi   82 (448)
T KOG0195|consen    3 DIFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDI   82 (448)
T ss_pred             hhhhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHH
Confidence            35566777887778888888889999999999999999999999999999999999999998888999999999999999


Q ss_pred             HHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCc
Q 009183          109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGR  188 (541)
Q Consensus       109 v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  188 (541)
                      |+.|++..+|+|+.+..|.||||+||.-|...+.+-|+.. |+.++..+++|.|||..|--.-..-+.+..-++|-+++.
T Consensus        83 vqkll~~kadvnavnehgntplhyacfwgydqiaedli~~-ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen   83 VQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCc
Confidence            9999999999999999999999999999999999989875 999999999999999887543333333344456766653

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=8.4e-18  Score=150.97  Aligned_cols=123  Identities=31%  Similarity=0.562  Sum_probs=113.0

Q ss_pred             HHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCC
Q 009183           79 IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN  158 (541)
Q Consensus        79 Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~  158 (541)
                      |-+.--|.|..|..|.+||||||+.|+..+++.|+++|+.+|..+....||||+|+.+||.++|+.|++. .+++|..+.
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~-kadvnavne   98 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSR-KADVNAVNE   98 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHH-hcccchhhc
Confidence            3344557788888999999999999999999999999999999999999999999999999999999976 899999999


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHH
Q 009183          159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL  202 (541)
Q Consensus       159 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~  202 (541)
                      .|.||||+||.-|...+.+-|+..|+.++..+++|.|||..|--
T Consensus        99 hgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   99 HGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             cCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            99999999999999999999999999999999999999988743

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=7.9e-17  Score=127.29  Aligned_cols=89  Identities=35%  Similarity=0.632  Sum_probs=58.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHH
Q 009183           30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA  109 (541)
Q Consensus        30 L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v  109 (541)
                      ||.|++.|+.+.++.+++. +.+++.    |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            5667777777777777663 555544    66677777777777777777777777777666677777777777777777


Q ss_pred             HHHHhCCCCCCccc
Q 009183          110 DVLVQNGARVEAAD  123 (541)
Q Consensus       110 ~~Ll~~g~~~~~~d  123 (541)
                      ++|+++|++++.+|
T Consensus        76 ~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHTTT-TTSS-
T ss_pred             HHHHHcCCCCCCcC
Confidence            77777777666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=3.7e-16  Score=131.83  Aligned_cols=122  Identities=37%  Similarity=0.648  Sum_probs=68.0

Q ss_pred             CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHc
Q 009183           57 DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY  136 (541)
Q Consensus        57 d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~  136 (541)
                      |.+|.||||.|+..++.+++++|++++.+.+..+..|.||+|.|+..++.++++.|++.|++++..+..|.||+|.|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            44566666666666666666666666655555555566666666666666666666666555555555555555555555


Q ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHH
Q 009183          137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL  179 (541)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  179 (541)
                      ++.+++++|+++ +.+.+..|..+.||++.|...++.+++++|
T Consensus        84 ~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          84 GNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            555555555543 344444444444555555554444444443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=6.8e-16  Score=130.17  Aligned_cols=122  Identities=42%  Similarity=0.661  Sum_probs=79.5

Q ss_pred             CCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHH
Q 009183           90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY  169 (541)
Q Consensus        90 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~  169 (541)
                      +.+|.||||.|+..|+.++++.|++.+.+.+.++..|.+|+|.|+..+..++++.|++. +..++..+..+.||+|+|+.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK-GADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHH
Confidence            45566777777777777777777776666666666666666666666666666666654 44555556666666666666


Q ss_pred             hCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHH
Q 009183          170 KGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL  212 (541)
Q Consensus       170 ~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  212 (541)
                      .++.+++++|++++.+.+..+..|.||++.|+..++.+++++|
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            6666666666666666666666666666666666666666655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.69  E-value=2.2e-16  Score=124.73  Aligned_cols=89  Identities=33%  Similarity=0.599  Sum_probs=63.6

Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHH
Q 009183           64 LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLN  143 (541)
Q Consensus        64 Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~  143 (541)
                      ||+|+..|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            5777777777777777777766655    667777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhcCCCcccCC
Q 009183          144 HIVAKYHADYDASD  157 (541)
Q Consensus       144 ~Ll~~~~~~~~~~d  157 (541)
                      +|++. |++++.+|
T Consensus        77 ~Ll~~-g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEH-GADVNIRN   89 (89)
T ss_dssp             HHHHT-TT-TTSS-
T ss_pred             HHHHc-CCCCCCcC
Confidence            77765 66666553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.68  E-value=7.5e-16  Score=157.81  Aligned_cols=163  Identities=23%  Similarity=0.253  Sum_probs=133.5

Q ss_pred             CCCCCCcchhhHHHHHH---cCCHHHHHHHHHhcCCCCccC----CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCC-
Q 009183           19 NQNDNQAAVTDVFSASA---YGDFEKLRKFVEEDGASVSRP----DGNGYFALQWAALNNFADIAQYIIDHGGDVNATD-   90 (541)
Q Consensus        19 ~~~~~~~~~~~L~~A~~---~g~~~~v~~ll~~~~~~~~~~----d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~-   90 (541)
                      .+.+...|+|.||.|.-   .+.-+.++.|++-.+.-+|..    ...|.||||+|+.+.+.++|++|++.||||+++- 
T Consensus       136 ~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~  215 (782)
T KOG3676|consen  136 LNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARAC  215 (782)
T ss_pred             cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhh
Confidence            34457789999999987   345588889998777655543    3479999999999999999999999999987631 


Q ss_pred             ----------------------CCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHh
Q 009183           91 ----------------------NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK  148 (541)
Q Consensus        91 ----------------------~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  148 (541)
                                            .-|..||-+||.-++.+++++|+++|||++++|.+|+|.||..+..-..+|..++++.
T Consensus       216 G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~  295 (782)
T KOG3676|consen  216 GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALEL  295 (782)
T ss_pred             ccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhc
Confidence                                  1267888888888888888888888888888888888888888888777888888865


Q ss_pred             cCCC--cccCCCCCCcHHHHHHHhCcHHHHHHHHhc
Q 009183          149 YHAD--YDASDNEGRSPLHWAAYKGFADTIRLLLFR  182 (541)
Q Consensus       149 ~~~~--~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  182 (541)
                       +++  ...++.+|-|||..||..|+.++.+.+++.
T Consensus       296 -ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  296 -GANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             -CCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence             666  667788888888888888888888888876

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=5.2e-15  Score=109.94  Aligned_cols=103  Identities=24%  Similarity=0.329  Sum_probs=90.9

Q ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHH
Q 009183           28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA  107 (541)
Q Consensus        28 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~  107 (541)
                      -.+..++++|.++.|++.+.+ +.++|..- .|.+|||+|+-.|+.+++++|+..|++++.+|+.|-|||..|+..||.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~-g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE-GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc-cccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            457788999999999999887 57787664 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCccccCCChHHHH
Q 009183          108 VADVLVQNGARVEAADVHGYRAVHV  132 (541)
Q Consensus       108 ~v~~Ll~~g~~~~~~d~~g~t~l~~  132 (541)
                      +|++|+++|+|-..+..+|.+.+..
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHhh
Confidence            9999999999988888888665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=2.2e-13  Score=127.83  Aligned_cols=127  Identities=34%  Similarity=0.518  Sum_probs=86.5

Q ss_pred             CCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC-----HHHHHHHHHhcCC---CcccCCCCC
Q 009183           89 TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ-----TSFLNHIVAKYHA---DYDASDNEG  160 (541)
Q Consensus        89 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~-----~~~v~~Ll~~~~~---~~~~~d~~g  160 (541)
                      .+..+.++++.++..+..++++.++..|++++.+|..|.||+|.|+..++     .++++.|++. +.   ..+.+|..|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~g  147 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNLRDEDG  147 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHc-CCCCCCccccCCCC
Confidence            34445666666666666666666666666666666666666666666666     6666666665 44   455557777


Q ss_pred             CcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183          161 RSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       161 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  216 (541)
                      .||||+|+..|+.++++.|++.|++++..+..|.|++++|+..++.++++.+++.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            77777777777777777777777777777777777777777777777777777643

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.52  E-value=4.3e-14  Score=105.10  Aligned_cols=103  Identities=24%  Similarity=0.340  Sum_probs=74.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHH
Q 009183          129 AVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEA  208 (541)
Q Consensus       129 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~  208 (541)
                      .+.+++++|..+-|+..... +.+++..- .|++|||+|+..|+.+++++|+..|++++.+|+.|-|||--|+..|+.++
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~-g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNE-GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHc-cccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            35567777777777766655 55565543 67788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCCCcccCCCCCCHHHHH
Q 009183          209 CTVLVHAGTKQELTAKDKAGLTPTQLA  235 (541)
Q Consensus       209 v~~Ll~~g~~~~~~~~d~~g~t~l~~A  235 (541)
                      |++|++.|+  +.+.+..+|.+.++.+
T Consensus        83 VklLL~~GA--drt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   83 VKLLLQNGA--DRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHcCc--ccceeCCCchhHHhhc
Confidence            888888887  4455566676655544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.51  E-value=6e-13  Score=124.86  Aligned_cols=130  Identities=32%  Similarity=0.447  Sum_probs=85.2

Q ss_pred             CccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCC-----HHHHHHHHhCCC---CCCcccc
Q 009183           53 VSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGS-----IAVADVLVQNGA---RVEAADV  124 (541)
Q Consensus        53 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~g~---~~~~~d~  124 (541)
                      ....+..+.+++|.|+..+..+++++++..|++++.++.+|.||||+|+..|+     .++++.|++.|+   +.+.+|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            33445556666666666666666666666666666666666666666666666     666666666666   4444566


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 009183          125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD  183 (541)
Q Consensus       125 ~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  183 (541)
                      .|.||+|+|+..|+.+++..|++. +.+++..+..|.|++++|+..++.+++..+++.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhc-CCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            666666666666666666666654 6666666666666666666666666666666654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.47  E-value=3.5e-13  Score=121.48  Aligned_cols=121  Identities=25%  Similarity=0.308  Sum_probs=111.2

Q ss_pred             cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCC-CCCCchHHHHHHHh
Q 009183           25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT-DNNGQTALHWAAVR  103 (541)
Q Consensus        25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~-~~~g~tpL~~A~~~  103 (541)
                      ....+|..++..|+.+....||.. --.+|.+|.+|.++|..|+..|+.++|+.|++.|+|+|.. ++.++||||+|+.+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            346789999999999999999975 5569999999999999999999999999999999999976 55789999999999


Q ss_pred             CCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHH
Q 009183          104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV  146 (541)
Q Consensus       104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll  146 (541)
                      |+.++.++|++.|+.+...+.-|.|+-..|+.-|+-+.|..+-
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            9999999999999999999999999999999999988886543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=8.6e-13  Score=128.11  Aligned_cols=119  Identities=25%  Similarity=0.371  Sum_probs=97.8

Q ss_pred             hhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCH
Q 009183           27 VTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSI  106 (541)
Q Consensus        27 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~  106 (541)
                      .-.|..|+..|.+|+|+..+.+ -.|+...+.+|.|+||-|+-.||.+||++|++.|+|||+.|.+|+||||.|+..+++
T Consensus       551 LaLLLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  551 LALLLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHHHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence            3446799999999999999876 678888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCccc-cCCChHHHHHH--HcCCHHHHHHHH
Q 009183          107 AVADVLVQNGARVEAAD-VHGYRAVHVAA--QYGQTSFLNHIV  146 (541)
Q Consensus       107 ~~v~~Ll~~g~~~~~~d-~~g~t~l~~A~--~~g~~~~v~~Ll  146 (541)
                      .+++.|++.|+-+.+.. .++.|+..-+-  ..|...+.+||-
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            99999999998876544 34455544332  234455555554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.38  E-value=5e-13  Score=94.57  Aligned_cols=55  Identities=36%  Similarity=0.642  Sum_probs=23.6

Q ss_pred             HHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 009183           46 VEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWA  100 (541)
Q Consensus        46 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A  100 (541)
                      |+..+.+++.+|..|.||||+||..|+.+++++|++.|++++.+|.+|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            3333366666666666666666666666666666666666666666666666665

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.38  E-value=1e-12  Score=92.48  Aligned_cols=54  Identities=39%  Similarity=0.757  Sum_probs=33.7

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHH
Q 009183           60 GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLV  113 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  113 (541)
                      |.||||+|+..|+.+++++|+++|.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            566777777777777777777777777777667777777777777777777664

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.38  E-value=3.3e-12  Score=115.28  Aligned_cols=122  Identities=28%  Similarity=0.343  Sum_probs=98.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcc-cCCCCcHHHHHHHcCC
Q 009183          127 YRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQ-DKDGCTPLHWAALRGN  205 (541)
Q Consensus       127 ~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~  205 (541)
                      ..+|.-++..+..+-..-|++. --.++..|.+|.|+|..|+++|+.+++++|++.|+|+|.. +..+.||||+|+.+|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCC
Confidence            3577777777777777777754 3347888888999999999999999999999999988864 4458899999999999


Q ss_pred             HHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183          206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ  251 (541)
Q Consensus       206 ~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~  251 (541)
                      .++.++|++.|+  .....|.-|+|+-++|+--|+.+.|..+.+.-
T Consensus        92 ~dvcrllldaGa--~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~  135 (396)
T KOG1710|consen   92 QDVCRLLLDAGA--RMYLVNSVGRTAAQMAAFVGHHECVAIINNHI  135 (396)
T ss_pred             chHHHHHHhccC--ccccccchhhhHHHHHHHhcchHHHHHHhccc
Confidence            999999999888  45567888899999998888888888776654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.38  E-value=6.6e-12  Score=135.18  Aligned_cols=106  Identities=25%  Similarity=0.302  Sum_probs=88.2

Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHH
Q 009183           63 ALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL  142 (541)
Q Consensus        63 ~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v  142 (541)
                      .|+.|+..|+.++++.|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            47788889999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh------cCCCcccCCCCCCcHHHHHH
Q 009183          143 NHIVAK------YHADYDASDNEGRSPLHWAA  168 (541)
Q Consensus       143 ~~Ll~~------~~~~~~~~d~~g~t~L~~A~  168 (541)
                      ++|+..      .+++.+..+..|.+|+..+.
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            888864      35566666666666655443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.36  E-value=1.7e-12  Score=91.46  Aligned_cols=54  Identities=48%  Similarity=0.826  Sum_probs=38.1

Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009183          160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV  213 (541)
Q Consensus       160 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  213 (541)
                      |.||||+|+..|+.+++++|+++|.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567888888888888888888778888888777888888888888888887775

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.36  E-value=3.1e-12  Score=137.74  Aligned_cols=105  Identities=23%  Similarity=0.329  Sum_probs=96.6

Q ss_pred             hHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHH
Q 009183           29 DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV  108 (541)
Q Consensus        29 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~  108 (541)
                      .|+.|+..|+.+.++.|++. |+++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            58899999999999988864 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-------CCCCCccccCCChHHHHHH
Q 009183          109 ADVLVQN-------GARVEAADVHGYRAVHVAA  134 (541)
Q Consensus       109 v~~Ll~~-------g~~~~~~d~~g~t~l~~A~  134 (541)
                      +++|+++       |++.+..+..|.+++..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999998       8888888887877765543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.36  E-value=8.7e-13  Score=93.33  Aligned_cols=55  Identities=47%  Similarity=0.753  Sum_probs=30.6

Q ss_pred             HHhCC-CCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHH
Q 009183           79 IIDHG-GDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA  133 (541)
Q Consensus        79 Ll~~g-~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A  133 (541)
                      |+++| ++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56677 78888888899999999999999999999988999999999999998886

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=2.2e-11  Score=118.46  Aligned_cols=120  Identities=28%  Similarity=0.379  Sum_probs=103.1

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHH
Q 009183          130 VHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEAC  209 (541)
Q Consensus       130 l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v  209 (541)
                      |.-|+..|.+++|+.++.+ -.|+...+..|-|+||-|+.-|+.++|++|++.|+++|..|.+|+||||.|+..++..++
T Consensus       554 LLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            3447788999999998876 567888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCcccCCCCCCHHHHHH--hcCchHHHHHHHHhh
Q 009183          210 TVLVHAGTKQELTAKDKAGLTPTQLAY--DKGHRQVALYLSNAQ  251 (541)
Q Consensus       210 ~~Ll~~g~~~~~~~~d~~g~t~l~~A~--~~~~~~i~~~L~~~~  251 (541)
                      +.|++.|+- -+...-.++.||.+-+-  +.|+.+..++|-...
T Consensus       633 kqLVe~Gaa-vfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vq  675 (752)
T KOG0515|consen  633 KQLVESGAA-VFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQ  675 (752)
T ss_pred             HHHHhccce-EEeeecccccchhhhcchhhhhHHHHHHHHHHHH
Confidence            999999983 33344467889988775  458888889886543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.93  E-value=3.9e-09  Score=102.29  Aligned_cols=99  Identities=29%  Similarity=0.368  Sum_probs=88.4

Q ss_pred             CcccCCCCCCcH------HHHHHHhCcHHHHHHHHhcCCCCCcccCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Q 009183          152 DYDASDNEGRSP------LHWAAYKGFADTIRLLLFRDASQGRQDKD-GCTPLHWAALRGNVEACTVLVHAGTKQELTAK  224 (541)
Q Consensus       152 ~~~~~d~~g~t~------L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~  224 (541)
                      ....+|.+|.+.      ||..++.|+.+..-.|+..|+++|.-+.+ |.||||.|++.|+..-+++|+-+|+  |+...
T Consensus       119 ~~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGA--D~~a~  196 (669)
T KOG0818|consen  119 RLPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGA--DPGAQ  196 (669)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccC--CCCCC
Confidence            355677777654      89999999999999999999999998877 9999999999999999999999999  88899


Q ss_pred             CCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          225 DKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       225 d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      |.+|+||+++|...||.++.+-|.+..-
T Consensus       197 d~~GmtP~~~AR~~gH~~laeRl~e~~y  224 (669)
T KOG0818|consen  197 DSSGMTPVDYARQGGHHELAERLVEIQY  224 (669)
T ss_pred             CCCCCcHHHHHHhcCchHHHHHHHHHHH
Confidence            9999999999999999999887776543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.87  E-value=1.2e-09  Score=112.08  Aligned_cols=87  Identities=32%  Similarity=0.436  Sum_probs=76.6

Q ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCC
Q 009183          150 HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD-GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAG  228 (541)
Q Consensus       150 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g  228 (541)
                      +--.+.+|..|+|+||.|+..+..+++++|+++|++++.+|.+ |.||||.|+..|+.+++..|+.+|+  .+..+|++|
T Consensus        42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~--SL~i~Dkeg  119 (1267)
T KOG0783|consen   42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGR--SLRIKDKEG  119 (1267)
T ss_pred             hhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCC--ceEEecccC
Confidence            3346788899999999999999999999999999999999887 9999999999999999999999996  788899999


Q ss_pred             CCHHHHHHhc
Q 009183          229 LTPTQLAYDK  238 (541)
Q Consensus       229 ~t~l~~A~~~  238 (541)
                      .+||+..++-
T Consensus       120 lsplq~~~r~  129 (1267)
T KOG0783|consen  120 LSPLQFLSRV  129 (1267)
T ss_pred             CCHHHHHhhc
Confidence            9999988773

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.83  E-value=1.2e-08  Score=100.36  Aligned_cols=118  Identities=29%  Similarity=0.408  Sum_probs=105.4

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCC--CCCCCCCCchHHHHHHHhCCHH
Q 009183           30 VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGD--VNATDNNGQTALHWAAVRGSIA  107 (541)
Q Consensus        30 L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~--~~~~~~~g~tpL~~A~~~g~~~  107 (541)
                      |..|+.++++-.+++.-.. |-++-.++.+..+.||+|++.|+-|+|++++++|..  ++..+..|.|+||-|+..++-.
T Consensus       870 il~av~~~D~~klqE~h~~-gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN-GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc-CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            7889999998777777655 667778899999999999999999999999999874  4566788999999999999999


Q ss_pred             HHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHh
Q 009183          108 VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK  148 (541)
Q Consensus       108 ~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~  148 (541)
                      +.++|++.|+.+...|..|.||-.-|-+.|..+...||-.+
T Consensus       949 vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999999999999999999999999999988754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.82  E-value=1.4e-08  Score=99.88  Aligned_cols=120  Identities=28%  Similarity=0.341  Sum_probs=100.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC--CCcccCCCCcHHHHHHHcCCHH
Q 009183          130 VHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS--QGRQDKDGCTPLHWAALRGNVE  207 (541)
Q Consensus       130 l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~d~~g~tpLh~A~~~g~~~  207 (541)
                      +..|+..+..--+..... .|.++-.++.+..+.||+|+..|+-++|+|++.+|..  ++..|..|.|+||.|+..++..
T Consensus       870 il~av~~~D~~klqE~h~-~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHL-NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHh-cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            344554444333333332 3778888999999999999999999999999999875  5778889999999999999999


Q ss_pred             HHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          208 ACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       208 ~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      +.++|++.|+  .+.-.|..|+||-.-|.+.|..++..+|.+.+.
T Consensus       949 vc~~lvdaga--sl~ktd~kg~tp~eraqqa~d~dlaayle~rq~  991 (1004)
T KOG0782|consen  949 VCQLLVDAGA--SLRKTDSKGKTPQERAQQAGDPDLAAYLESRQN  991 (1004)
T ss_pred             HHHHHHhcch--hheecccCCCChHHHHHhcCCchHHHHHhhhhc
Confidence            9999999998  777889999999999999999999999987653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.78  E-value=3e-08  Score=96.26  Aligned_cols=95  Identities=26%  Similarity=0.311  Sum_probs=84.2

Q ss_pred             CccCCCCCchH------HHHHHHcCcHHHHHHHHhCCCCCCCCCC-CCchHHHHHHHhCCHHHHHHHHhCCCCCCccccC
Q 009183           53 VSRPDGNGYFA------LQWAALNNFADIAQYIIDHGGDVNATDN-NGQTALHWAAVRGSIAVADVLVQNGARVEAADVH  125 (541)
Q Consensus        53 ~~~~d~~g~t~------Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~  125 (541)
                      +..+|.+|.|.      ||..++.|+.+..-.|+..|+++|..+. .|.||||.|++.|+.--+++|+-+|||+...|.+
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~  199 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS  199 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC
Confidence            44567777764      8999999999999999999999998876 5899999999999999999999999999999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHH
Q 009183          126 GYRAVHVAAQYGQTSFLNHIVA  147 (541)
Q Consensus       126 g~t~l~~A~~~g~~~~v~~Ll~  147 (541)
                      |.||+.+|-+.||-++.+.|++
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHH
Confidence            9999999999999888777765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.74  E-value=9.2e-09  Score=105.65  Aligned_cols=100  Identities=27%  Similarity=0.386  Sum_probs=87.8

Q ss_pred             cCCHHHHHHHHHhcC-CCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCC-CCchHHHHHHHhCCHHHHHHHH
Q 009183           36 YGDFEKLRKFVEEDG-ASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDN-NGQTALHWAAVRGSIAVADVLV  113 (541)
Q Consensus        36 ~g~~~~v~~ll~~~~-~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll  113 (541)
                      .+....++-++.+.. .-.|.+|.-|.|+||+|+..+..++++||+++|+++..+|. .|+||||-|+..|+++++-.|+
T Consensus        27 Ks~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL  106 (1267)
T KOG0783|consen   27 KSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLL  106 (1267)
T ss_pred             cCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHH
Confidence            334434666666543 34788899999999999999999999999999999999987 6999999999999999999999


Q ss_pred             hCCCCCCccccCCChHHHHHHH
Q 009183          114 QNGARVEAADVHGYRAVHVAAQ  135 (541)
Q Consensus       114 ~~g~~~~~~d~~g~t~l~~A~~  135 (541)
                      ++|+.+..+|++|.+||..-++
T Consensus       107 ~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  107 SKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hcCCceEEecccCCCHHHHHhh
Confidence            9999999999999999998776

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.70  E-value=1.6e-08  Score=97.76  Aligned_cols=95  Identities=31%  Similarity=0.350  Sum_probs=87.1

Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHH
Q 009183          157 DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY  236 (541)
Q Consensus       157 d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~  236 (541)
                      +.++..++++|++.|....++.+.-.|.|++.+|.+.+|+||.|+..|+.+++++|++.- +.+...+|.-|+|||+-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~-kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNAC-KVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHH-cCCCChhhccCCCcchHhH
Confidence            345567899999999999999999999999999999999999999999999999999874 3688999999999999999


Q ss_pred             hcCchHHHHHHHHhhh
Q 009183          237 DKGHRQVALYLSNAQH  252 (541)
Q Consensus       237 ~~~~~~i~~~L~~~~~  252 (541)
                      .-+|.+++++|.+...
T Consensus       582 ~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hcCcHHHHHHHHHHhc
Confidence            9999999999988764

>PF13606 Ank_3: Ankyrin repeat

Probab=98.70  E-value=2.1e-08  Score=60.30  Aligned_cols=28  Identities=43%  Similarity=0.717  Sum_probs=16.6

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhCCCCCC
Q 009183           60 GYFALQWAALNNFADIAQYIIDHGGDVN   87 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~   87 (541)
                      |+||||+||..|+.|++++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5556666666666666666666655554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.62  E-value=4.9e-08  Score=58.66  Aligned_cols=29  Identities=45%  Similarity=0.725  Sum_probs=26.6

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhCCCCCC
Q 009183           92 NGQTALHWAAVRGSIAVADVLVQNGARVE  120 (541)
Q Consensus        92 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  120 (541)
                      +|+||||+||+.|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            48899999999999999999999999886

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.61  E-value=6.1e-08  Score=60.13  Aligned_cols=31  Identities=39%  Similarity=0.696  Sum_probs=17.0

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 009183           60 GYFALQWAALNNFADIAQYIIDHGGDVNATD   90 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~   90 (541)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5555555555555555555555555555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.60  E-value=5e-08  Score=94.38  Aligned_cols=90  Identities=28%  Similarity=0.323  Sum_probs=48.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh-cCCCCCcccCCCCcHHHHHHHc
Q 009183          125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF-RDASQGRQDKDGCTPLHWAALR  203 (541)
Q Consensus       125 ~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~  203 (541)
                      .+...+.+|+..|....++.+... +.+++.+|.+.+|+||.||..|+++++++|++ .+.+++.+|..|+|||.-|...
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            344445555555555555444433 55555555555555555555555555555554 2455555555555555555555


Q ss_pred             CCHHHHHHHHHc
Q 009183          204 GNVEACTVLVHA  215 (541)
Q Consensus       204 g~~~~v~~Ll~~  215 (541)
                      ++.+++++|-++
T Consensus       584 ~h~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHKEVVKLLEEA  595 (622)
T ss_pred             CcHHHHHHHHHH
Confidence            555555555443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.55  E-value=1.1e-07  Score=58.86  Aligned_cols=33  Identities=39%  Similarity=0.696  Sum_probs=29.8

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhCCCCCCcccc
Q 009183           92 NGQTALHWAAVRGSIAVADVLVQNGARVEAADV  124 (541)
Q Consensus        92 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~  124 (541)
                      +|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            588999999999999999999999999988763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.52  E-value=5.9e-07  Score=93.88  Aligned_cols=125  Identities=18%  Similarity=0.198  Sum_probs=97.0

Q ss_pred             CCCcchhhHHHHHHcCCHHHHHHHHHhcC---CCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHH
Q 009183           22 DNQAAVTDVFSASAYGDFEKLRKFVEEDG---ASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALH   98 (541)
Q Consensus        22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~---~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~   98 (541)
                      ....++.....|++.||...|++.++...   .++|..|.-|.++|+.|..+.+.|++++|++++.+.       ..+|.
T Consensus        21 ~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL   93 (822)
T KOG3609|consen   21 DLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALL   93 (822)
T ss_pred             ccchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHH
Confidence            44455667889999999999999998755   478999999999999999999999999999987554       45899


Q ss_pred             HHHHhCCHHHHHHHHhCCCCCC----------ccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcc
Q 009183           99 WAAVRGSIAVADVLVQNGARVE----------AADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYD  154 (541)
Q Consensus        99 ~A~~~g~~~~v~~Ll~~g~~~~----------~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~  154 (541)
                      .|+..|..++++.++.+.....          ..-..+.||+.+||..++.|+++.|+.+ |+.+.
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k-g~~i~  158 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR-GHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc-CCCCC
Confidence            9999999999999998754331          1123455666666666666666666655 44443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.40  E-value=1.2e-06  Score=86.96  Aligned_cols=82  Identities=32%  Similarity=0.477  Sum_probs=40.4

Q ss_pred             HHHHcCcHHHHHHHHhCCCC--CCC--CCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHH
Q 009183           66 WAALNNFADIAQYIIDHGGD--VNA--TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSF  141 (541)
Q Consensus        66 ~A~~~~~~~iv~~Ll~~g~~--~~~--~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~  141 (541)
                      .|+.......+-+|+.+|..  ++.  .+.+|.|+||+||+.|++.+.++|+-+|+|+..+|.+|.|+|.+|-+.|..++
T Consensus       630 ~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec  709 (749)
T KOG0705|consen  630 RAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQEC  709 (749)
T ss_pred             HHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHH
Confidence            34444444444455554432  121  12344555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHH
Q 009183          142 LNHIVA  147 (541)
Q Consensus       142 v~~Ll~  147 (541)
                      +..|++
T Consensus       710 ~d~llq  715 (749)
T KOG0705|consen  710 IDVLLQ  715 (749)
T ss_pred             HHHHHH
Confidence            555553

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.32  E-value=1.5e-06  Score=85.97  Aligned_cols=88  Identities=28%  Similarity=0.372  Sum_probs=69.9

Q ss_pred             HHHHHHHcCCHHH-HHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHH
Q 009183          129 AVHVAAQYGQTSF-LNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE  207 (541)
Q Consensus       129 ~l~~A~~~g~~~~-v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~  207 (541)
                      |+|.++.....+- .+.|..+....++..|..|+||||.|+..|+.+.++.|+..|+++..++++|++|||-|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            4777776665543 334444446678888888999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHcC
Q 009183          208 ACTVLVHAG  216 (541)
Q Consensus       208 ~v~~Ll~~g  216 (541)
                      ++..++.+-
T Consensus       103 ~i~~vlr~~  111 (560)
T KOG0522|consen  103 IITEVLRHL  111 (560)
T ss_pred             HHHHHHHHh
Confidence            888777653

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.32  E-value=1e-06  Score=87.17  Aligned_cols=88  Identities=20%  Similarity=0.262  Sum_probs=62.5

Q ss_pred             hhHHHHHHcCCHHHHHHHHHh-cCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCH
Q 009183           28 TDVFSASAYGDFEKLRKFVEE-DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSI  106 (541)
Q Consensus        28 ~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~  106 (541)
                      .++|.++-..+.+.+.+.+.. ....++.+|..|.||||+|+.-|+.+.++.|+..|+++..++..|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            347777777776666664433 3445667777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhC
Q 009183          107 AVADVLVQN  115 (541)
Q Consensus       107 ~~v~~Ll~~  115 (541)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            777766654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.19  E-value=5.2e-06  Score=82.64  Aligned_cols=89  Identities=28%  Similarity=0.400  Sum_probs=53.4

Q ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCC----ccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhC
Q 009183           96 ALHWAAVRGSIAVADVLVQNGARVE----AADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKG  171 (541)
Q Consensus        96 pL~~A~~~g~~~~v~~Ll~~g~~~~----~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~  171 (541)
                      -|.-|....++..+-+|+.+|....    .-+.+|.|+||+||..|+..+.+.|+ =+|+|+..+|..|+|+|.+|-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhhhhHhhcc
Confidence            3444555556666666666653322    22345566666666666666665555 346666666666666666666666


Q ss_pred             cHHHHHHHHhcCCC
Q 009183          172 FADTIRLLLFRDAS  185 (541)
Q Consensus       172 ~~~~v~~Ll~~g~~  185 (541)
                      ..+++..|+.+|..
T Consensus       706 sqec~d~llq~gcp  719 (749)
T KOG0705|consen  706 SQECIDVLLQYGCP  719 (749)
T ss_pred             cHHHHHHHHHcCCC
Confidence            66666666666654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.17  E-value=2.5e-06  Score=91.25  Aligned_cols=128  Identities=23%  Similarity=0.400  Sum_probs=75.7

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHH
Q 009183          123 DVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL  202 (541)
Q Consensus       123 d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~  202 (541)
                      ...|++.+|+++..+..-.+..+++-.+......|.+|...+|.++..|..-.+....-.|..++.+|..|+||||+|+.
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~  650 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAF  650 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhh
Confidence            34555666666666655555555543234444555556666666444433222222223456666666666666666666


Q ss_pred             cCCHHHHHHHHHcCCC----CCCcccCCCCCCHHHHHHhcCchHHHHHHHHh
Q 009183          203 RGNVEACTVLVHAGTK----QELTAKDKAGLTPTQLAYDKGHRQVALYLSNA  250 (541)
Q Consensus       203 ~g~~~~v~~Ll~~g~~----~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~  250 (541)
                      +|+..++..|++.|+.    .+.+..+-.|.|+-++|..+|+..+..+|.++
T Consensus       651 ~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  651 RGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            6666666666655543    23334445688888888888888888887665

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.09  E-value=2.6e-06  Score=91.74  Aligned_cols=91  Identities=31%  Similarity=0.401  Sum_probs=82.9

Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHh
Q 009183          158 NEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYD  237 (541)
Q Consensus       158 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~  237 (541)
                      ..|.|+||.|+..+...++++|++.|+++|..|..|+||||.+...|+...+..|++.|+  +.++.|.+|++|+++|.+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a--~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGA--DPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccc--cccccCccCcchhhHHhh
Confidence            457899999999999999999999999999999999999999999999999999999998  677889999999999988


Q ss_pred             cCchHHHHHHHHh
Q 009183          238 KGHRQVALYLSNA  250 (541)
Q Consensus       238 ~~~~~i~~~L~~~  250 (541)
                      ..+.+++-++.-.
T Consensus       732 ~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  732 AANADIVLLLRLA  744 (785)
T ss_pred             hccccHHHHHhhh
Confidence            8888877766543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.05  E-value=3.9e-05  Score=80.60  Aligned_cols=120  Identities=17%  Similarity=0.175  Sum_probs=72.8

Q ss_pred             HHHHHHHcCcHHHHHHHHhCC----CCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC
Q 009183           63 ALQWAALNNFADIAQYIIDHG----GDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ  138 (541)
Q Consensus        63 ~Lh~A~~~~~~~iv~~Ll~~g----~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~  138 (541)
                      -...|+..|+...|+..++..    .++|..|.-|.++|+.|..+.+.+++++|++++...       ..+|.+|+..|.
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~  100 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGS  100 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHH
Confidence            445677777777777776542    245556667777777777777777777777775443       347777777777


Q ss_pred             HHHHHHHHHhcCCCc---------ccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcc
Q 009183          139 TSFLNHIVAKYHADY---------DASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQ  189 (541)
Q Consensus       139 ~~~v~~Ll~~~~~~~---------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  189 (541)
                      .+.|+.++.......         ...-..+.||++.||..++.++++.|+.+|+.+...
T Consensus       101 v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  101 VPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            777777775421110         011122345555555555555555555555555443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.02  E-value=1.5e-05  Score=68.47  Aligned_cols=64  Identities=27%  Similarity=0.385  Sum_probs=34.0

Q ss_pred             CCccCCCCCchHHHHHHHcCcHHHHHHHHhCC-CCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q 009183           52 SVSRPDGNGYFALQWAALNNFADIAQYIIDHG-GDVNATDNNGQTALHWAAVRGSIAVADVLVQN  115 (541)
Q Consensus        52 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g-~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  115 (541)
                      ++|.+|.-|+|+|+.|+..|+.+.+.+|+.+| +.|...|..|.+++.+|-+.|..+.++.|.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            44555555555555555555555555555555 45555555555555555555555555555544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.96  E-value=1.9e-05  Score=67.91  Aligned_cols=79  Identities=29%  Similarity=0.389  Sum_probs=60.8

Q ss_pred             CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC-CCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC
Q 009183           83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG-ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGR  161 (541)
Q Consensus        83 g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  161 (541)
                      +.++|.+|..|+||++.|+..|+.+.+.+|+++| +.+...|..|.+++.+|-+.|..+++..|.+. ..+.+..+.+..
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~-~~ets~p~nss~   80 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN-DRETSHPMNSSR   80 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH-hccCCCcccCCC
Confidence            3567888888888888888888888888888888 88888888888888888888888888887775 333334443333


Q ss_pred             c
Q 009183          162 S  162 (541)
Q Consensus       162 t  162 (541)
                      +
T Consensus        81 ~   81 (223)
T KOG2384|consen   81 D   81 (223)
T ss_pred             C
Confidence            3

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.94  E-value=3.4e-05  Score=73.21  Aligned_cols=71  Identities=21%  Similarity=0.337  Sum_probs=60.9

Q ss_pred             hhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHH
Q 009183           27 VTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALH   98 (541)
Q Consensus        27 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~   98 (541)
                      .-.|+.|++.|+.+.|+.|++ .|.++|.+|.-..+||.+|+..||.++||+|+++|+-.+.-..+|.-.+.
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHY  107 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhh
Confidence            456899999999999999998 59999999999999999999999999999999999876665556666643

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.93  E-value=1.1e-05  Score=86.50  Aligned_cols=123  Identities=19%  Similarity=0.250  Sum_probs=56.7

Q ss_pred             CCCCchHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHhCCHHHHHHHH-hCCCCCCccccCCChHHHHHH
Q 009183           57 DGNGYFALQWAALNNFADIAQYIIDH-GGDVNATDNNGQTALHWAAVRGSIAVADVLV-QNGARVEAADVHGYRAVHVAA  134 (541)
Q Consensus        57 d~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~l~~A~  134 (541)
                      ...|++.+|+++..+..-+++.+++- |......+.+|.-.+|+++. ++.+.+-+++ -.|..++.+|..|+||||+|+
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cCCceeEEEEeecccccccccCCCCcccchHh
Confidence            34455555555555555555555543 33334444444444444332 2223332222 244555555555555555555


Q ss_pred             HcCCHHHHHHHHHhc---C--CCcccCCCCCCcHHHHHHHhCcHHHHHHHH
Q 009183          135 QYGQTSFLNHIVAKY---H--ADYDASDNEGRSPLHWAAYKGFADTIRLLL  180 (541)
Q Consensus       135 ~~g~~~~v~~Ll~~~---~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  180 (541)
                      ..|+..++..|.+..   +  .++...+-.|.|+...|..+|+..+..+|-
T Consensus       650 ~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~ls  700 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLS  700 (975)
T ss_pred             hcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHh
Confidence            555555555554320   1  112222334555555555555555555444

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.89  E-value=1.1e-05  Score=87.17  Aligned_cols=83  Identities=35%  Similarity=0.432  Sum_probs=51.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhC
Q 009183           92 NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKG  171 (541)
Q Consensus        92 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~  171 (541)
                      .|.|+||.|+..|...+.+.|+++|++++.+|..|.+|+|.+...|+...+..++.+ +++.+..+.+|.+|++.|....
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~-~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKR-GADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccc-cccccccCccCcchhhHHhhhc
Confidence            455666666666666666666666666666666666666666666666666555543 6666666666666666665554


Q ss_pred             cHHH
Q 009183          172 FADT  175 (541)
Q Consensus       172 ~~~~  175 (541)
                      +.+.
T Consensus       734 ~~d~  737 (785)
T KOG0521|consen  734 NADI  737 (785)
T ss_pred             cccH
Confidence            4333

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.69  E-value=0.00011  Score=69.91  Aligned_cols=74  Identities=28%  Similarity=0.328  Sum_probs=61.8

Q ss_pred             hHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHc
Q 009183           62 FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY  136 (541)
Q Consensus        62 t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~  136 (541)
                      --|..||+.|..+.|++|++.|.++|..|.-..+||.+|+..||.+.+++|+++||-...-.-+|.-. |+++.+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN  111 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh
Confidence            36889999999999999999999999999999999999999999999999999998765444455544 344443

>smart00248 ANK ankyrin repeats

Probab=96.65  E-value=0.0033  Score=36.48  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=15.0

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhCCCCC
Q 009183           60 GYFALQWAALNNFADIAQYIIDHGGDV   86 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~   86 (541)
                      |.||+|+|+..++.++++.|++++.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.55  E-value=0.0054  Score=60.87  Aligned_cols=71  Identities=28%  Similarity=0.308  Sum_probs=58.4

Q ss_pred             HHHHHHHHhcCCCCCc------ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHH
Q 009183          173 ADTIRLLLFRDASQGR------QDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALY  246 (541)
Q Consensus       173 ~~~v~~Ll~~g~~~~~------~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~  246 (541)
                      ...+++|.+++.+.|.      .+..--|+||+|+..|..++|.+||+.|.  |..++|..|+||.+++.   +.|+-..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~--Dp~~kd~~Grtpy~ls~---nkdVk~~  478 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGC--DPSTKDGAGRTPYSLSA---NKDVKSI  478 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcC--CchhcccCCCCcccccc---cHHHHHH
Confidence            6788889888877753      23346799999999999999999999996  88899999999999987   5565555


Q ss_pred             HH
Q 009183          247 LS  248 (541)
Q Consensus       247 L~  248 (541)
                      ..
T Consensus       479 F~  480 (591)
T KOG2505|consen  479 FI  480 (591)
T ss_pred             HH
Confidence            44

>smart00248 ANK ankyrin repeats

Probab=96.35  E-value=0.0065  Score=35.12  Aligned_cols=28  Identities=39%  Similarity=0.711  Sum_probs=22.8

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhCCCCCC
Q 009183           93 GQTALHWAAVRGSIAVADVLVQNGARVE  120 (541)
Q Consensus        93 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  120 (541)
                      |.||+|+|+..++.++++.|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6788888888888888888888877653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.11  E-value=0.0067  Score=60.23  Aligned_cols=64  Identities=20%  Similarity=0.197  Sum_probs=49.5

Q ss_pred             CcHHHHHHHHhCCCCCCCC------CCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHH
Q 009183           71 NFADIAQYIIDHGGDVNAT------DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA  134 (541)
Q Consensus        71 ~~~~iv~~Ll~~g~~~~~~------~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~  134 (541)
                      .-++.++.|.+++.+.|..      +.--.|+||+|+.+|..+++.+|++.|+|+..+|..|.||..++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3467788888887665432      223568888888888888888888888888888888888888776

>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]

Probab=96.02  E-value=0.09  Score=51.15  Aligned_cols=126  Identities=23%  Similarity=0.245  Sum_probs=79.3

Q ss_pred             cCCccccccccccccCCCCCcCCccchhhhhccCCcCceeeccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 009183          360 WTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRIWTAPHL  439 (541)
Q Consensus       360 ~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~wi~nCIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~~  439 (541)
                      ++...++.|..|+.=-...-|||.--++||-+--|           +=.-.|++++.+..+..++.....+.........
T Consensus       118 ~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (309)
T COG5273         118 YKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHD  186 (309)
T ss_pred             ccCCCCccchhhcchhhccCccCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence            34455689999999999999999999999987433           5677899888777776666666555555544443


Q ss_pred             CCCCcchhh-----hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHhhhhcccc
Q 009183          440 PADGTWIHY-----VLVHPGLVLFLVLDTIILIAGTTLTSIQAYQIARNITTNELANSVRYD  496 (541)
Q Consensus       440 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~~~~~  496 (541)
                      +........     .....+++..+++....+.++......+.+.+.++.++-|...-.+.+
T Consensus       187 ~~~~~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~  248 (309)
T COG5273         187 TSLAICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRES  248 (309)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccC
Confidence            332211100     011112222222333334455567778889999999998876544443

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.36  E-value=0.35  Score=42.24  Aligned_cols=138  Identities=14%  Similarity=0.003  Sum_probs=65.5

Q ss_pred             hHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHH
Q 009183           62 FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSF  141 (541)
Q Consensus        62 t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~  141 (541)
                      ..+.-|++.+..++++..-+...+-   -...++-...||+..+.++|+|+-+.-.-.     +-.+....|......++
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~i~-----~~~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLHIY-----NPEDIFDIAFAKKDLSL  119 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccCCC-----CchhhhhhhhhccchhH
Confidence            3566677777777776665543211   123456667777777777777774431111     11234455655555543


Q ss_pred             HH---HHHHhcCCCcccCCCC--CCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009183          142 LN---HIVAKYHADYDASDNE--GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV  213 (541)
Q Consensus       142 v~---~Ll~~~~~~~~~~d~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  213 (541)
                      ..   .|+-.....-+..|..  -..-|.+|+.+|-...+.-.+++|.+++.      ++|-.|+..++..++.+++
T Consensus       120 yslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  120 YSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            11   1111100000000000  00124455555555555555555554443      4555555555555555544

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.03  E-value=0.44  Score=42.86  Aligned_cols=111  Identities=14%  Similarity=0.237  Sum_probs=60.4

Q ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCC----CCchHHHHHHH-
Q 009183           28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDN----NGQTALHWAAV-  102 (541)
Q Consensus        28 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~----~g~tpL~~A~~-  102 (541)
                      -.|-.|+..-|.+.+..++.+.        .+-.+++-+|..++..+++.+|+++- +....|-    .+.--+.++.. 
T Consensus       155 isledAV~AsN~~~i~~~VtdK--------kdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDK--------KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcch--------HHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhh
Confidence            3467888888888887776531        13446888888888888888888752 1111111    12223333322 


Q ss_pred             -hCCHHHHHHHHhCC-CCCCc---cccCCChHHHHHHHcCCHHHHHHHHH
Q 009183          103 -RGSIAVADVLVQNG-ARVEA---ADVHGYRAVHVAAQYGQTSFLNHIVA  147 (541)
Q Consensus       103 -~g~~~~v~~Ll~~g-~~~~~---~d~~g~t~l~~A~~~g~~~~v~~Ll~  147 (541)
                       +.+..++++.+++| +++|.   +.+.|.|-|..|.++++.+++..|++
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk  275 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLK  275 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHH
Confidence             23445555555555 33332   23345555555555555555555443

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.59  E-value=0.66  Score=41.79  Aligned_cols=113  Identities=14%  Similarity=0.123  Sum_probs=66.0

Q ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCC----CCcHHHHHHH--
Q 009183           96 ALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE----GRSPLHWAAY--  169 (541)
Q Consensus        96 pL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~----g~t~L~~A~~--  169 (541)
                      .|.-|+...+.+-+.-++...-       .-.+++-+|+.++..+++.+|+.+...  ..+|.-    +.--+.++..  
T Consensus       156 sledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~~K~dva~~lls~f~f--t~~dv~~~~~~~ydieY~LS~h  226 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGNAKEDVALYLLSKFNF--TKQDVASMEKELYDIEYLLSEH  226 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcccHHHHHHHHHhhcce--ecchhhhcCcchhhHHHHHhhc
Confidence            4556666667666666655321       234688888888888899999886432  222211    1112233322  


Q ss_pred             hCcHHHHHHHHhcCC-CCCc---ccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183          170 KGFADTIRLLLFRDA-SQGR---QDKDGCTPLHWAALRGNVEACTVLVHAGT  217 (541)
Q Consensus       170 ~~~~~~v~~Ll~~g~-~~~~---~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  217 (541)
                      ..+..++++++++|. ++|.   +-+.|.|-|.-|+..++.+++..|+++|+
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            223566666666653 3432   23446777777777777777777777776

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.52  E-value=1.5  Score=38.35  Aligned_cols=138  Identities=15%  Similarity=0.095  Sum_probs=91.0

Q ss_pred             hHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHH
Q 009183           95 TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFAD  174 (541)
Q Consensus        95 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~  174 (541)
                      --+.-|+..+-..+++..-+...+-   -...++..-.||+..+.++|+|+-+....      .+-.+....|..+.+.+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccchh
Confidence            3556788888888888777653321   12355678899999999999999653211      11234566777777665


Q ss_pred             HH----HHHHhcCCCCCcccCC--CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHH
Q 009183          175 TI----RLLLFRDASQGRQDKD--GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLS  248 (541)
Q Consensus       175 ~v----~~Ll~~g~~~~~~d~~--g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~  248 (541)
                      +.    .++..+..+-...|..  -..-|++|+..|-...+...+++|..  .+      .++|..|+..+|..+..++.
T Consensus       119 LyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~--~~------~~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGN--VD------IIVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCc--cc------HHHHHHHHHhhHHHHHHHhh
Confidence            43    1222322222111111  12457899999999999999999972  21      27999999999999998875


Q ss_pred             H
Q 009183          249 N  249 (541)
Q Consensus       249 ~  249 (541)
                      .
T Consensus       191 ~  191 (192)
T PF03158_consen  191 R  191 (192)
T ss_pred             c
Confidence            3

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.07  E-value=0.4  Score=35.90  Aligned_cols=48  Identities=10%  Similarity=0.365  Sum_probs=28.1

Q ss_pred             hHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhc
Q 009183           95 TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY  149 (541)
Q Consensus        95 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~  149 (541)
                      ..+..|..+|+.|+++.+++.+ .++      ...+..|+...+.+++++|++++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            3456666666666666666543 111      23566666666666666666653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]

Probab=89.95  E-value=0.75  Score=44.89  Aligned_cols=43  Identities=26%  Similarity=0.472  Sum_probs=34.5

Q ss_pred             CCCcCCccchhhhhccCCcCceeeccccCCch-----------HHHHHHHHHHH
Q 009183          377 VRSKHCPACKCCVEQFDHHCPWISNCVGKRNK-----------RDFFIFLCLGT  419 (541)
Q Consensus       377 ~Rs~HC~~C~~CV~~~DHHC~wi~nCIG~~N~-----------~~F~~fl~~~~  419 (541)
                      -+.|+|..|+..+...-|||..-|+||-+.=|           |-+-.|+.+++
T Consensus       111 ~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~  164 (299)
T KOG1311|consen  111 VEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF  164 (299)
T ss_pred             cceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence            35899999999999999999999999987654           45667885555

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.77  E-value=1  Score=33.71  Aligned_cols=45  Identities=20%  Similarity=0.341  Sum_probs=20.7

Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q 009183           64 LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN  115 (541)
Q Consensus        64 Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  115 (541)
                      +..|+.+|+.|+++.+++.+ .++      ...+..|+...+-+++++|++.
T Consensus        10 l~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen   10 LEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            44455555555555544432 111      2344555555555555555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.83  E-value=4.1  Score=36.00  Aligned_cols=62  Identities=26%  Similarity=0.417  Sum_probs=41.5

Q ss_pred             CCccccccccccccCCCCCcCCccchhhhhccCCcCceeeccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009183          361 TGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHCPWISNCVGKRNKRDFFIFLCLGTLTSYLASGIAIHRI  433 (541)
Q Consensus       361 ~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~wi~nCIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~  433 (541)
                      .....+.|..|+.--..+-|||..-+.||-+--|           +-+-.|+++.....+..++.....+...
T Consensus        58 kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~-----------~~F~~fl~~~~~~~~~~~~~~~~~~~~~  119 (174)
T PF01529_consen   58 KPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNH-----------RYFLLFLLYLCLYCLYFFILSLYYLVRY  119 (174)
T ss_pred             CCCcceeccccccccccccccchhhccccccccH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345678888888888888888888888887544           3455777776655555555444444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=86.69  E-value=8.1  Score=44.19  Aligned_cols=25  Identities=16%  Similarity=0.263  Sum_probs=19.4

Q ss_pred             hHHHHHHHcCcHHHHHHHHhCCCCC
Q 009183           62 FALQWAALNNFADIAQYIIDHGGDV   86 (541)
Q Consensus        62 t~Lh~A~~~~~~~iv~~Ll~~g~~~   86 (541)
                      .++.-|...+.++.|++|+++|.+.
T Consensus       427 ~aM~dALv~DR~dFV~LLlEnGv~m  451 (1381)
T KOG3614|consen  427 SAMDDALVLDRPDFVRLLLENGVSM  451 (1381)
T ss_pred             HHHHHHHHhCcHHHHHHHHHcCcch
Confidence            3556677888888888888888764

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=84.49  E-value=0.53  Score=26.02  Aligned_cols=21  Identities=33%  Similarity=0.846  Sum_probs=17.8

Q ss_pred             ccccccccCCCCCcCCccchh
Q 009183          367 LCPTCKIIRPVRSKHCPACKC  387 (541)
Q Consensus       367 ~C~~C~~~kp~Rs~HC~~C~~  387 (541)
                      +|+.|...-++.++.|+.|+.
T Consensus         1 ~Cp~CG~~~~~~~~fC~~CG~   21 (23)
T PF13240_consen    1 YCPNCGAEIEDDAKFCPNCGT   21 (23)
T ss_pred             CCcccCCCCCCcCcchhhhCC
Confidence            588898888889999998874

>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional

Probab=83.07  E-value=0.62  Score=30.62  Aligned_cols=22  Identities=27%  Similarity=0.821  Sum_probs=20.7

Q ss_pred             cccccccccCCCCCcCCccchh
Q 009183          366 QLCPTCKIIRPVRSKHCPACKC  387 (541)
Q Consensus       366 ~~C~~C~~~kp~Rs~HC~~C~~  387 (541)
                      .+|..|...-|+|+..|+.|+.
T Consensus        15 ~ICrkC~ARnp~~A~~CRKCg~   36 (48)
T PRK04136         15 KICMRCNARNPWRATKCRKCGY   36 (48)
T ss_pred             cchhcccCCCCccccccccCCC
Confidence            7899999999999999999875

>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]

Probab=81.71  E-value=11  Score=36.55  Aligned_cols=82  Identities=17%  Similarity=0.226  Sum_probs=49.4

Q ss_pred             HHHHHHHhhccCCCcccCCCCCCCCC-CCCCccccccCCCCCCcCCccccccccccccCCCCCcCCccchhhhhccCCcC
Q 009183          318 SLIMFYRCSSKDPGYIKRSQDIDNHT-DSEDPLLTIDLNNSPIWTGNWSQLCPTCKIIRPVRSKHCPACKCCVEQFDHHC  396 (541)
Q Consensus       318 ~~~~~~~~~~~dPG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC  396 (541)
                      ...++.---+.-||+-|......... .-. +        -..++.-.+..|.+|+-=-..--|||.--+.||---.|  
T Consensus        66 ~~A~~~gPG~vp~~wkPe~~~D~~~lqfCk-~--------CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh--  134 (414)
T KOG1314|consen   66 FNAIFTGPGFVPLGWKPENPKDEMFLQFCK-K--------CQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANH--  134 (414)
T ss_pred             HHHHhcCCCCCCCCCCCCCChhHHHHHHHh-h--------ccCcCCCccccchHHHHHHHhhccCCcchhhccccccc--
Confidence            34455566677888888654321110 000 0        00111123477999986666668999999999964443  


Q ss_pred             ceeeccccCCchHHHHHHHHHHH
Q 009183          397 PWISNCVGKRNKRDFFIFLCLGT  419 (541)
Q Consensus       397 ~wi~nCIG~~N~~~F~~fl~~~~  419 (541)
                               .-.-+|++|.+...
T Consensus       135 ---------~~F~~FLlf~ivG~  148 (414)
T KOG1314|consen  135 ---------AYFLRFLLFSIVGC  148 (414)
T ss_pred             ---------HHHHHHHHHHHHhc
Confidence                     35689999988843

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=81.28  E-value=0.92  Score=25.90  Aligned_cols=22  Identities=32%  Similarity=0.851  Sum_probs=19.2

Q ss_pred             cccccccccCCCCCcCCccchh
Q 009183          366 QLCPTCKIIRPVRSKHCPACKC  387 (541)
Q Consensus       366 ~~C~~C~~~kp~Rs~HC~~C~~  387 (541)
                      ++|+.|...-++-++.|+.|+.
T Consensus         3 ~~Cp~Cg~~~~~~~~fC~~CG~   24 (26)
T PF13248_consen    3 MFCPNCGAEIDPDAKFCPNCGA   24 (26)
T ss_pred             CCCcccCCcCCcccccChhhCC
Confidence            6799999988999999999874

>PTZ00303 phosphatidylinositol kinase; Provisional

Probab=81.14  E-value=0.9  Score=48.12  Aligned_cols=31  Identities=32%  Similarity=0.787  Sum_probs=23.4

Q ss_pred             CCCcCCcc--ccccccccccCC-------CCCcCCccchh
Q 009183          357 SPIWTGNW--SQLCPTCKIIRP-------VRSKHCPACKC  387 (541)
Q Consensus       357 ~~~~~~~~--~~~C~~C~~~kp-------~Rs~HC~~C~~  387 (541)
                      .+.|..+.  ...|..|...-.       .|-|||+.|++
T Consensus       450 APvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGr  489 (1374)
T PTZ00303        450 NPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGI  489 (1374)
T ss_pred             CCCCCCCcccCCcccCcCCcccccccccccccccccCCcc
Confidence            35666554  367999998774       39999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	541
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-26
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-21
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-21
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-20
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-14
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-19
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-19
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-19
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-19
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-16
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-18
1uoh_A	226	Human Gankyrin Length = 226		1e-17
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-17
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-17
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-17
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		5e-17
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		8e-17
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		8e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-17
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-16
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-16
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-16
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-16
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-16
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-16
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-16
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-16
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-14
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-16
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		7e-16
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-15
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-15
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-15
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-15
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		8e-07
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		8e-14
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-12
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-12
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-12
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-12
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		1e-11
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-11
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-07
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-11
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		9e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-11
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		5e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-10
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		5e-10
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		8e-10
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-08
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-08
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-09
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-09
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-09
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-09
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		4e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-09
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		6e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		7e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		6e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-09
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-08
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-08
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-07
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		4e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		5e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-07
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-07
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		5e-07
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		5e-07
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		6e-07
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		6e-07
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		6e-07
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		7e-07
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		7e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		7e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		8e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		9e-07
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		4e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		5e-06
3so8_A	162	Crystal Structure Of Ankra Length = 162		6e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		7e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		3e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		1e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		4e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-04
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-04
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		2e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		2e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		4e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		4e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		5e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		9e-04

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 29  DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
           D+  A+ YG +E+ R+ VE  G  V +PD      L WAA+NN  D+ +Y I  G  V+ 
Sbjct: 12  DIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70
Query: 89  TDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
              +   T LHWA  +G +++   L++ GA     D  G   +H+AAQ+G TS + +++A
Sbjct: 71  LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 148 KYHADYDASDNEGRSPLHWAAYKGFA-DTIRLLLFRDASQGRQDK-DGCTPLHWAALRGN 205
           K   D D  D  G +PL WAAY+  + D  RLLL  + S    DK    T LHWA L GN
Sbjct: 131 KGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189
Query: 206 VEACTVLVHAG 216
               ++L+ AG
Sbjct: 190 TTVISLLLEAG 200

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
           AA  G      +L+ NGA V A D  GY  +H+AA+ G    +  ++ K  AD +A D +
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKD 67
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           G +PLH AA +G  + + +LL   A    +DKDG TPLH AA  G++E   VL+ AG   
Sbjct: 68  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-- 125
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
           ++ A+DK G TP  LA  +GH  +A  L  A
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
           AA  G      +L+ NGA V A D  GY  +H+AA+ G    +  ++ K  AD +A D +
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKD 67
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           G +PLH AA +G  + + +LL   A    +DKDG TPLH AA  G++E   VL+ AG   
Sbjct: 68  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-- 125
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
           ++ A+DK G TP  LA D G+  +A  L  A
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + +I +G DVNA DN G T LH AAV G + + +VL+++GA V+AADV+G+  +H+A
Sbjct: 28  DEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A  G    +  ++ KY AD +A D  G +PLH AA +G  + + +LL   A    QDK G
Sbjct: 88  AMTGHLEIV-EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFG 146
Query: 194 CTPLHWAALRGN 205
            T    +   GN
Sbjct: 147 KTAFDISIDNGN 158

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
           AA  G      +L+ NGA V A D  G   +H+AA  G    +  ++ K+ AD DA+D  
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVY 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           G +PLH AA  G  + + +LL   A     D  G TPLH AA  G++E   VL+  G   
Sbjct: 80  GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
           ++ A+DK G T   ++ D G+  +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + ++ +G DVNA DN G T LH AA  G + + +VL+++GA V+A+DV GY  +H+A
Sbjct: 28  DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A +G    +  ++ K  AD +A D++G +PLH AA  G+ + + +LL   A    QDK G
Sbjct: 88  AYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
            T    +   GN +   +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 7/236 (2%)
Query: 19  NQNDNQAAV---TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADI 75
           N N N A     T +  A+  G  E +   +E++ AS +     G+  L  AA      +
Sbjct: 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEKE-ASQACMTKKGFTPLHVAAKYGKVRV 161
Query: 76  AQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQ 135
           A+ +++     NA   NG T LH A    ++ +  +L+  G    +   +GY  +H+AA+
Sbjct: 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK 221
Query: 136 YGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCT 195
             Q      ++ +Y    +A   +G +PLH AA +G A+ + LLL + A+    +K G T
Sbjct: 222 QNQVEVARSLL-QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 280
Query: 196 PLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
           PLH  A  G+V    VL+  G    + A  + G TP  +A   G+ ++  +L   Q
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVM--VDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + ++ +G DVNATDN+G T LH AA  G + + +VL++NGA V A+D+ G   +H+A
Sbjct: 28  DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A  G    +  ++ K+ AD +A DN+G +PLH AA  G  + + +LL   A    QDK G
Sbjct: 88  AATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
            T    +   GN +   +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
           AA  G+      L++NGA V A+D  G   +H AA+ G    +  +++K  AD +A D++
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISK-GADVNAKDSD 69
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           GR+PLH+AA +G  + ++LL+ + A    +D DG TPLH+AA  G+ E   +L+  G   
Sbjct: 70  GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA-- 127
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           ++   D  G TP  LA + G+ ++   L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
           AA  G      +L+ NGA V A D  GY  +H+AA+ G    +  ++ K  AD +A D +
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKD 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           G +PLH AA +G  + + +LL   A    +DKDG TPLH AA  G++E   VL+ AG   
Sbjct: 80  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
           ++ A+DK G T   ++ D G+  +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 92  NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHA 151
           NG+T LH AA  G + V  +L++ GA V A D +G   +H+AA+ G    +  ++ +  A
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LLLEAGA 59
Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV 211
           D +A D  GR+PLH AA  G  + ++LLL   A    +DK+G TPLH AA  G++E   +
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 212 LVHAG 216
           L+ AG
Sbjct: 120 LLEAG 124

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA 184
           +G   +H+AA+ G    +  ++ +  AD +A D  GR+PLH AA  G  + ++LLL   A
Sbjct: 1   NGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
               +DK+G TPLH AA  G++E   +L+ AG   ++ AKDK G TP  LA   GH +V 
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA--DVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 245 LYLSNA 250
             L  A
Sbjct: 118 KLLLEA 123

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + ++ +G DVNA D++G+T LH AA++G + + +VL+++GA V AAD  G   +H+A
Sbjct: 28  DEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A YG    +  ++ K  AD +A+D  G +PLH AA  G  + + +LL   A    QDK G
Sbjct: 88  ALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
            T    +   GN +   +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 3/199 (1%)
Query: 37  GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
           G  E+L++ +  D +  +R D +   AL WA      +I ++++  G  VN  D+ G + 
Sbjct: 17  GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 97  LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS 156
           LH AA  G   +   L+  GA+V A + +G   +H AA   +      ++ +  A+ DA 
Sbjct: 77  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
           D+   + +H AA KG    I +LL+  AS   QD +G TPLH A     VE   +LV  G
Sbjct: 136 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 195
Query: 217 TKQELTAKDKAGLTPTQLA 235
               +  K++   TP Q+A
Sbjct: 196 ASIYIENKEEK--TPLQVA 212

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 3/199 (1%)
Query: 37  GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
           G  E+L++ +  D +  +R D +   AL WA      +I ++++  G  VN  D+ G + 
Sbjct: 18  GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 77
Query: 97  LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS 156
           LH AA  G   +   L+  GA+V A + +G   +H AA   +      ++ +  A+ DA 
Sbjct: 78  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 136
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
           D+   + +H AA KG    I +LL+  AS   QD +G TPLH A     VE   +LV  G
Sbjct: 137 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 196
Query: 217 TKQELTAKDKAGLTPTQLA 235
               +  K++   TP Q+A
Sbjct: 197 ASIYIENKEEK--TPLQVA 213

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
           AA  G+      L++NGA V A+D  G   +H AA+ G    +  +++K  AD +A D++
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSD 69
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           GR+PLH AA  G  + ++LL+ + A    +D DG TPLH AA  G+ E   +L+  G   
Sbjct: 70  GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA-- 127
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           ++   D  G TP  LA + G+ +V   L
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
           AA  G+      L++NGA   A+D  G   +H AA+ G    +  +++K  AD +A D++
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK-GADPNAKDSD 69
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           GR+PLH+AA  G  + ++LLL + A    +D DG TPLH+AA  G+ E   +L+  G   
Sbjct: 70  GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA-- 127
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           +    D  G TP  LA + G+ ++   L
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 77/137 (56%), Gaps = 3/137 (2%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
           +L+ NGA V A D +G   +H+AA  GQ   +  ++ K  AD +ASD+ G +PLH AAY 
Sbjct: 24  ILMANGADVNATDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYD 82
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
           G  + + +LL   A     D+ G TPLH AAL G +E   VL+  G   ++ A+D  GLT
Sbjct: 83  GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA--DVNAQDALGLT 140
Query: 231 PTQLAYDKGHRQVALYL 247
              ++ ++G   +A  L
Sbjct: 141 AFDISINQGQEDLAEIL 157

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 3/199 (1%)
Query: 37  GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
           G  ++L++ +  D +  +R D +   AL WA      +I ++++  G  VN  D+ G + 
Sbjct: 17  GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 97  LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS 156
           LH AA  G   +   L+  GA V A + +G   +H AA   +      ++ +  A+ DA 
Sbjct: 77  LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
           D+   + +H AA KG    + +LLF  AS   QD +G TPLH A     VE    LV  G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 217 TKQELTAKDKAGLTPTQLA 235
               +  K++   TP Q+A
Sbjct: 196 ASIYIENKEEK--TPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 3/199 (1%)
Query: 37  GDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA 96
           G  ++L++ +  D +  +R D +   AL WA      +I ++++  G  VN  D+ G + 
Sbjct: 17  GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 97  LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS 156
           LH AA  G   +   L+  GA V A + +G   +H AA   +      ++ +  A+ DA 
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAK 135
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
           D+   + +H AA KG    + +LLF  AS   QD +G TPLH A     VE    LV  G
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 217 TKQELTAKDKAGLTPTQLA 235
               +  K++   TP Q+A
Sbjct: 196 ASIYIENKEEK--TPLQVA 212

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + ++ +G DVNA D  G T LH AA  G + + +VL++NGA V A D  G   +H+A
Sbjct: 28  DEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A+ G    +  ++ KY AD +A D  G +PLH AA  G  + + +LL   A    QDK G
Sbjct: 88  AKRGHLEIV-EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
            T    +   GN +   +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + ++ +G D NA D+ G+T LH AA  G + + +VL++NGA V A D +G   +H+A
Sbjct: 16  DEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLA 75
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A  G    +  ++ KY AD +A D  G +PL+ AAY G  + + +LL   A    QDK G
Sbjct: 76  ASLGHLEIV-EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFG 134
Query: 194 CTPLHWAALRGNVEACTVL 212
            T    +   GN +   +L
Sbjct: 135 KTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
           AA+ GQ   +  ++A   AD +A D+ GR+PLH AA  G  + + +LL   A     D +
Sbjct: 9   AARAGQDDEVRILMAN-GADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN 67
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           G TPLH AA  G++E   VL+  G   ++ AKD  G+TP  LA   GH ++
Sbjct: 68  GTTPLHLAASLGHLEIVEVLLKYGA--DVNAKDATGITPLYLAAYWGHLEI 116

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
           AA  G+      L++NGA V A+D  G   +H+AA+ G    +  ++++  AD +A D++
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSD 69
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           G++PLH AA  G  + ++LLL + A    +D DG TPLH AA  G+ E   +L+  G   
Sbjct: 70  GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA-- 127
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           +    D  G TP  LA + G+ +V   L
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
           AA  G      +L+ NGA V A D  G+  +H+AA +G    +  ++ K  AD +A D+ 
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIV-EVLLKNGADVNAKDSL 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           G +PLH AA +G  + + +LL   A     D  G TPLH AA RG++E   VL+  G   
Sbjct: 80  GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
           ++ A+DK G T   ++ D G+  +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
           +L+ NGA V AADV G+  +H+AA +G    +  ++ K  AD +A D  G +PLH AA+ 
Sbjct: 32  ILMANGADVNAADVVGWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHF 90
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
           G  + + +LL   A    +D +G TPLH AA RG++E   VL+  G   ++ A+DK G T
Sbjct: 91  GHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA--DVNAQDKFGKT 148
Query: 231 PTQLAYDKGHRQVA 244
              ++ + G+  +A
Sbjct: 149 AFDISINNGNEDLA 162

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + ++ +G DVNATD +G T LH AA  G + + +VL+++GA V A D+ G   +H+A
Sbjct: 28  DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A  G    +  ++ K+ AD +A D  G +PLH AA  G  + + +LL   A    QDK G
Sbjct: 88  ALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
            T    +   GN +   +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + ++ +G DVNATD  G T LH AA  G + + +VL++ GA V A D +G   +H+A
Sbjct: 28  DEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A  G    +  ++ K+ AD +A D EG +PLH AAY G  + + +LL   A    QDK G
Sbjct: 88  ADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
            T    +   GN +   +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + ++ +G DVNATD +G T LH AA  G + + +VL+++GA V A D+ G   +H+A
Sbjct: 28  DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A  G    +  ++ K+ AD +A D  G +PLH AA  G  + + +LL   A    QDK G
Sbjct: 88  ALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
            T    +   GN +   +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + ++ +G DVNA D +G T LH AA  G + + +VL++NGA V A D  G   + +A
Sbjct: 28  DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A +G    +  ++ K  AD +A+D EG +PLH AA  G  + + +LL   A    QDK G
Sbjct: 88  ALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
            T    +   GN +   +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
           +L+ NGA V A D  G+  +H+AA  G    +  ++ K  AD +A D+ G +PL  AA  
Sbjct: 32  ILMANGADVNAEDASGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDHAGMTPLRLAALF 90
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
           G  + + +LL   A     D +G TPLH AA+ G++E   VL+  G   ++ A+DK G T
Sbjct: 91  GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA--DVNAQDKFGKT 148
Query: 231 PTQLAYDKGHRQVA 244
              ++ D G+  +A
Sbjct: 149 AFDISIDNGNEDLA 162

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 33/247 (13%)
Query: 31  FSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD 90
            +A + GD E++ + +E  GA ++  + +G  AL  A +++  D+ ++++++G ++N  D
Sbjct: 45  LAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 91  NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH 150
           N G   LH AA  G + +A+ L+  GA V A +  G   + +A +      L + V +  
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 151 ADYDASDNE--------------------------GRSPLHWAAYKGFADTIRLLLFRDA 184
            D +A+  E                          G + LH AA KG+ + ++LL+    
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223
Query: 185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
               +D DG TPLH AA  G  EAC +LV      ++ A +K G    Q A+D     + 
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVE--NLCDMEAVNKVG----QTAFDVADEDIL 277
Query: 245 LYLSNAQ 251
            YL   Q
Sbjct: 278 GYLEELQ 284

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
           AA  G      +L+ NGA V A D  G   +H+    G    +  ++ KY AD +ASD  
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEII-EVLLKYAADVNASDKS 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           G +PLH AAY+G  + + +LL   A     D  G TPLH AA  G++E   VL+  G   
Sbjct: 80  GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-- 137
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVA 244
           ++ A+DK G T   ++ D G+  +A
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + ++ +G DVNA+D+ G T LH AA  G + + +VL++NGA V A D  G   +H+A
Sbjct: 28  DEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A  G    +  ++ K  AD +A+D+ G +PLH AA  G  + + +LL   A    QDK G
Sbjct: 88  ADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
            T    +   GN +   +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D  + ++ +G DVNA D+ G T LH AA  G   + +VL+++GA V A D  G+  +H+A
Sbjct: 28  DEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           A  G    +  ++ KY AD +A D  G +PLH AA +G  + + +LL   A    QDK G
Sbjct: 88  ADNGHLEIVE-VLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFG 146
Query: 194 CTPLHWAALRGNVEACTVL 212
            T    +   GN +   +L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
           +L+ NGA V A D  G   +H+AA  G    +  ++ K+ AD +A D +G +PLH AA  
Sbjct: 32  ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVE-VLLKHGADVNARDTDGWTPLHLAADN 90
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
           G  + + +LL   A    QD  G TPLH AA RG++E   VL+  G   ++ A+DK G T
Sbjct: 91  GHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA--DVNAQDKFGKT 148
Query: 231 PTQLAYDKGHRQVALYLS 248
              ++ D G+  +A  L 
Sbjct: 149 AFDISIDNGNEDLAEILQ 166

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 91/202 (45%), Gaps = 4/202 (1%)
Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA++     +    L  AA NN  +  +Y+I  G  V+  D  G T LH AA +G   V 
Sbjct: 34  GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVV 93
Query: 110 DVLVQNGAR-VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
             L+ NG   V   D  G+  +  A +Y     +  +++K  +D +  DNE    LHWAA
Sbjct: 94  QYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SDINIRDNEENICLHWAA 152
Query: 169 YKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAG 228
           + G  D   +LL         +  G +PLH AA R N   C VL       ++T K+K G
Sbjct: 153 FSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA-RENRYDCVVLF-LSRDSDVTLKNKEG 210
Query: 229 LTPTQLAYDKGHRQVALYLSNA 250
            TP Q A        AL +S A
Sbjct: 211 ETPLQCASLNSQVWSALQMSKA 232

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEAC 209
           H ++       RSPLH AA  G  D   +L+   A+     +D  TPL  AA   ++EA 
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 210 TVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALY-LSNAQ 251
             L+ AG    +  KD  G T   LA  KGH +V  Y LSN Q
Sbjct: 61  KYLIKAGAL--VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 4/170 (2%)
Query: 79  IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYRAVHVAAQYG 137
           ++D G D N+ DN G+T LH A    ++ V  +L++N A    A +H G   + +AA+  
Sbjct: 70  LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 138 QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
               +  ++    AD +A+DN G++ LHWAA     + + +LL   A++  QD    TPL
Sbjct: 130 IEGMVEDLI-TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188
Query: 198 HWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
             AA  G+ EA   L+     +E+T  D     P  +A ++ H  +   L
Sbjct: 189 FLAAREGSYEASKALLDNFANREIT--DHMDRLPRDVASERLHHDIVRLL 236

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 5/200 (2%)
Query: 50  GASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           GAS+ ++ D  G  AL  AA  + +D A+ +++   D N  DN G+T LH A    +  V
Sbjct: 46  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 105
Query: 109 ADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
             +L++N A    A +H G   + +AA+      L  ++   HAD +A D+ G+S LHWA
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWA 164
Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA 227
           A     D   +LL   A++  Q+    TPL  AA  G+ E   VL+     +++T  D  
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT--DHM 222
Query: 228 GLTPTQLAYDKGHRQVALYL 247
              P  +A ++ H  +   L
Sbjct: 223 DRLPRDIAQERMHHDIVRLL 242

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 5/200 (2%)
Query: 50  GASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           GAS+ ++ D  G  AL  AA  + +D A+ +++   D N  DN G+T LH A    +  V
Sbjct: 47  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 106
Query: 109 ADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
             +L++N A    A +H G   + +AA+      L  ++   HAD +A D+ G+S LHWA
Sbjct: 107 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWA 165
Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA 227
           A     D   +LL   A++  Q+    TPL  AA  G+ E   VL+     +++T  D  
Sbjct: 166 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT--DHM 223
Query: 228 GLTPTQLAYDKGHRQVALYL 247
              P  +A ++ H  +   L
Sbjct: 224 DRLPRDIAQERMHHDIVRLL 243

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 5/200 (2%)
Query: 50  GASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           GAS+ ++ D  G  AL  AA  + +D A+ +++   D N  DN G+T LH A    +  V
Sbjct: 46  GASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 105
Query: 109 ADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
             +L++N A    A +H G   + +AA+      L  ++   HAD +A D+ G+S LHWA
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWA 164
Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA 227
           A     D   +LL   A++  Q+    TPL  AA  G+ E   VL+     +++T  D  
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT--DHM 222
Query: 228 GLTPTQLAYDKGHRQVALYL 247
              P  +A ++ H  +   L
Sbjct: 223 DRLPRDIAQERMHHDIVRLL 242

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 5/200 (2%)
Query: 50  GASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           GAS+ ++ D  G  AL  AA  + +D A+ +++   D N  DN G+T LH A    +  V
Sbjct: 14  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 109 ADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
             +L++N A    A +H G   + +AA+      L  ++   HAD +A D+ G+S LHWA
Sbjct: 74  FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDDLGKSALHWA 132
Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA 227
           A     D   +LL   A++  Q+    TPL  AA  G+ E   VL+     +++T  D  
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT--DHM 190
Query: 228 GLTPTQLAYDKGHRQVALYL 247
              P  +A ++ H  +   L
Sbjct: 191 DRLPRDIAQERMHHDIVRLL 210

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           GR+PLH AA  G  + ++LLL   A    +DK+G TPLH AA  G++E   +L+ AG   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-- 59
Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
           ++ AKDK G TP  LA   GH +V   L  A
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 5/200 (2%)
Query: 50  GASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           GAS+ ++ D  G  AL  AA  + +D A+ +++   D    DN G+T LH A    +  V
Sbjct: 11  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV 70
Query: 109 ADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
             +L++N A    A +H G   + +AA+      L  ++   HAD +A D+ G+S LHWA
Sbjct: 71  FQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLI-NSHADVNAVDDLGKSALHWA 129
Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA 227
           A     D   +LL   A++  Q+    TPL  AA  G+ E   VL+     +++T  D  
Sbjct: 130 AAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDIT--DHM 187
Query: 228 GLTPTQLAYDKGHRQVALYL 247
              P  +A ++ H  +   L
Sbjct: 188 DRLPRDIAQERMHHDIVRLL 207

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 34/175 (19%)
Query: 23  NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
           N  A   +  A+  GD E ++K       +    +G     L +AA  N   + +Y++ H
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 83  GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
           G DV+A D  G   LH A   G   VA++LV++GA V  AD+  +               
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF--------------- 109
Query: 143 NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
                              +PLH AA KG  +  +LLL   A   ++++DG TPL
Sbjct: 110 -------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 119 VEAADVHGYRA--VHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
           V   D+ G ++  +H AA Y + S + +++ ++ AD  A D  G  PLH A   G  +  
Sbjct: 33  VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
            LL+   A     D    TPLH AA +G  E C +L+  G   + T K++ G TP  L  
Sbjct: 92  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVK 149
Query: 237 D 237
           D
Sbjct: 150 D 150

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 34/175 (19%)
Query: 23  NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
           N  A   +  A+  GD E ++K       +    +G     L +AA  N   + +Y++ H
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 83  GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
           G DV+A D  G   LH A   G   VA++LV++GA V  AD+  +               
Sbjct: 69  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF--------------- 113
Query: 143 NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
                              +PLH AA KG  +  +LLL   A   ++++DG TPL
Sbjct: 114 -------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 119 VEAADVHGYRA--VHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
           V   D+ G ++  +H AA Y + S + +++ ++ AD  A D  G  PLH A   G  +  
Sbjct: 37  VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
            LL+   A     D    TPLH AA +G  E C +L+  G   + T K++ G TP  L  
Sbjct: 96  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVK 153
Query: 237 D 237
           D
Sbjct: 154 D 154

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 34/175 (19%)
Query: 23  NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
           N  A   +  A+  GD E ++K       +    +G     L +AA  N   + +Y++ H
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 83  GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
           G DV+A D  G   LH A   G   VA++LV++GA V  AD+  +               
Sbjct: 67  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF--------------- 111
Query: 143 NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
                              +PLH AA KG  +  +LLL   A   ++++DG TPL
Sbjct: 112 -------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 119 VEAADVHGYRA--VHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
           V   D+ G ++  +H AA Y + S + +++ ++ AD  A D  G  PLH A   G  +  
Sbjct: 35  VNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
            LL+   A     D    TPLH AA +G  E C +L+  G   + T K++ G TP  L  
Sbjct: 94  ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA--DPTKKNRDGNTPLDLVK 151
Query: 237 D 237
           D
Sbjct: 152 D 152

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
           AA+ GQ   +  ++A   AD +A D +G +PLH AA  G  + + +LL   A    +D  
Sbjct: 21  AARAGQDDEVRILMAN-GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
           G TPLH AA+RG++E   VL+  G   ++ A+DK G T   ++ D G+  +A
Sbjct: 80  GITPLHLAAIRGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
           AA+ GQ   +  ++A   AD +A+D +G +PLH AA     + + +LL   A     D D
Sbjct: 21  AARAGQDDEVRILMAN-GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
           G TPLH AAL G++E   VL+  G   ++ A+DK G T   ++ D G+  +A
Sbjct: 80  GSTPLHLAALFGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYF---ALQWAALNNFADIAQYIIDHGGDVNAT 89
           A+A GD +++R+ +  +   +  PD    F   ALQ     + A IA  ++  G   N  
Sbjct: 15  AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGSTA-IALELLKQGASPNVQ 70
Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
           D +G + +H AA  G +    VLV++GA V   D  G   +H+A Q G T+ ++ + A+ 
Sbjct: 71  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 129
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
            +D    D  G +PL  A  +G  D + +L
Sbjct: 130 -SDLHRRDARGLTPLELALQRGAQDLVDIL 158

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 97  LHWAAVRGSIA-VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA 155
           L  AA RG +  V  +L +     +A +  G  A+ V   +G T+    ++ K  A  + 
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELL-KQGASPNV 69
Query: 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215
            D  G SP+H AA  GF DT+++L+   A     D  G  P+H A   G+    + L   
Sbjct: 70  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL--- 126
Query: 216 GTKQELTAKDKAGLTPTQLAYDKG 239
             + +L  +D  GLTP +LA  +G
Sbjct: 127 AAESDLHRRDARGLTPLELALQRG 150

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYF---ALQWAALNNFADIAQYIIDHGGDVNAT 89
           A+A GD +++R+ +  +   +  PD    F   ALQ     + A IA  ++  G   N  
Sbjct: 9   AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGSTA-IALELLKQGASPNVQ 64
Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
           D +G + +H AA  G +    VLV++GA V   D  G   +H+A Q G T+ ++ + A+ 
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
            +D    D  G +PL  A  +G  D + +L
Sbjct: 124 -SDLHRRDARGLTPLELALQRGAQDLVDIL 152

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 97  LHWAAVRGSIA-VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA 155
           L  AA RG +  V  +L +     +A +  G  A+ V   +G T+    ++ K  A  + 
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELL-KQGASPNV 63
Query: 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215
            D  G SP+H AA  GF DT+++L+   A     D  G  P+H A   G+    + L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL--- 120
Query: 216 GTKQELTAKDKAGLTPTQLAYDKG 239
             + +L  +D  GLTP +LA  +G
Sbjct: 121 AAESDLHRRDARGLTPLELALQRG 144

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 49  DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           +GA V+  D  G   L  AA+N+  +I + ++ +G DVNA D  G+T LH  A+ G + +
Sbjct: 36  NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYG 137
            +VL+++GA V A D  G  A  ++   G
Sbjct: 96  VEVLLKHGADVNAQDKFGKTAFDISIDNG 124

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
           AA+ GQ   +  ++A   AD +A D  G +PLH AA     + + +LL   A     D  
Sbjct: 21  AARAGQDDEVRILMAN-GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
           G TPLH  A+ G++E   VL+  G   ++ A+DK G T   ++ D G+  +A
Sbjct: 80  GETPLHLVAMYGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 112/255 (43%), Gaps = 29/255 (11%)
Query: 24  QAAVTD---VFSASAYGDFEKLRKFVEEDGASVS-RPDGNGYFALQWAALNNFADIAQYI 79
           +AAV D   +  A    D + +++ +E  GA+V+ + +  G+  L  A   +  DI + +
Sbjct: 20  RAAVEDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELL 78
Query: 80  IDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139
           + HG D      NG T    AA+ GS+ +  + +  GA V   D +G+ A   AA YG+ 
Sbjct: 79  LRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 138
Query: 140 SFLN---------HIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD 190
             L          ++  K   D +     G + L  AA KG  + +++LL     +   D
Sbjct: 139 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL----DEMGAD 194
Query: 191 KDGCTPLHWAAL--------RGNVEACT-VLVHAGTKQELTAKDKAGLTPTQLAYDKGHR 241
            + C  +   AL          +VEA T +L+  G   ++  + + G TP  LA +K H 
Sbjct: 195 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA--DVNVRGERGKTPLILAVEKKHL 252
Query: 242 QVALYLSNAQHMHRN 256
            +   L   +H+  N
Sbjct: 253 GLVQRLLEQEHIEIN 267

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 30  VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
           +  A+  G  +++R  +  +GA V+  D  G   L  AA     +I + ++ HG DVNA+
Sbjct: 18  LLEATRAGQDDEVR-ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137
           D+ G+T LH AA  G + + +VL++ GA V A D  G  A  ++   G
Sbjct: 77  DSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
           +L+ NGA V A D  G   +H+AA+ G    +  ++ K+ AD +ASD+ GR+PLH AA  
Sbjct: 32  ILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATV 90
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
           G  + + +LL   A    QDK G T    +   GN +   +L
Sbjct: 91  GHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
           AD +A D+ G +PLH AA +G  + + +LL   A     D  G TPLH AA  G++E   
Sbjct: 38  ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVE 97
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
           VL+  G   ++ A+DK G T   ++ D G+  +A
Sbjct: 98  VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 25/228 (10%)
Query: 48  EDGASVS-RPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSI 106
           E GA+V+ + +  G+  L  A   +  DI + ++ HG D      NG T    AA+ GS+
Sbjct: 26  EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV 85
Query: 107 AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLN---------HIVAKYHADYDASD 157
            +  + +  GA V   D +G+ A   AA YG+   L          ++  K   D +   
Sbjct: 86  KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLR 145
Query: 158 NEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL--------RGNVEAC 209
             G + L  AA KG  + +++LL     +   D + C  +   AL          +VEA 
Sbjct: 146 KGGATALMDAAEKGHVEVLKILL----DEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201
Query: 210 T-VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRN 256
           T +L+  G   ++  + + G TP  LA +K H  +   L   +H+  N
Sbjct: 202 THLLLDHGA--DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 247

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK 218
           +G +PLH AA  G A+ ++ LL + A    + KDG TPLH AA  G+ E   +L+  G  
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA- 66
Query: 219 QELTAKDKAGLTPTQLAYDKGHRQVALYL-SNAQHMHRNHWG 259
            ++ A+ K G TP  LA   GH ++   L +    ++   WG
Sbjct: 67  -DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG 107

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
           AD +A D+ G +PLH AA +G  + + +LL   A    +D  G TPLH AA  G++E   
Sbjct: 38  ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVE 97
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
           VL+  G   ++ A+DK G T   ++ D G+  +A
Sbjct: 98  VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 56  PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN 115
            D  G  AL WA  NN   IA+ ++  G +VN  D +G+T L W+ + G   ++  L+++
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 116 GARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADT 175
           GA V   ++ G   + VA++YG++  +  ++ +  AD  A D  G +    A   G  + 
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLL-ELGADISARDLTGLTAEASARIFGRQEV 182
Query: 176 IRLL 179
           I++ 
Sbjct: 183 IKIF 186

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
Query: 87  NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
           N  D+  +T L  A + G     D LV+N  ++E  D+ G  A+  A +  +      ++
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV 206
           +K  ++ +  D  G++PL W+   G+++    LL   A+   ++ +G TPL  A+  G  
Sbjct: 89  SK-GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 207 EACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           E    L+  G   +++A+D  GLT    A   G ++V
Sbjct: 148 EIVKKLLELGA--DISARDLTGLTAEASARIFGRQEV 182

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 49  DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           +GA V+  D  G   L  AA     +I + ++ HG DVNA+D  G+T LH AA  G + +
Sbjct: 36  NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYG 137
            +VL++ GA V A D  G  A  ++   G
Sbjct: 96  VEVLLEYGADVNAQDKFGKTAFDISIDNG 124

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
           AD +A D+ G +PLH AA +G  + + +LL   A     D  G TPLH AA  G++E   
Sbjct: 38  ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVE 97
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
           VL+  G   ++ A+DK G T   ++ D G+  +A
Sbjct: 98  VLLEYGA--DVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 89  TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK 148
           T++ G+T LH A+++G I   + L+QNG+     D  G+  +H A  +G    +  ++ +
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE-LLLQ 64
Query: 149 YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHW 199
           + A  + +  +  SPLH AA  G  D ++LLL   AS+   +  G  P+ +
Sbjct: 65  HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
           AA  G      +L  NGA V A D  G+  +H+AA  G    +  ++ K  AD +A+ N 
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIV-EVLLKNGADVNATGNT 79
Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
           GR+PLH AA+    + + +LL   A    QDK G T    +   GN +   +L
Sbjct: 80  GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
           AA+ GQ   +  I+    AD +A+D  G +PLH AA  G  + + +LL   A        
Sbjct: 21  AARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
           G TPLH AA   ++E   VL+  G   ++ A+DK G T   ++ D G+  +A
Sbjct: 80  GRTPLHLAAWADHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNGNEDLA 129

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYF---ALQWAALNNFADIAQYIIDHGGDVNAT 89
           A+A GD +++R+ +  +   +  PD    F   ALQ     + A +A  ++  G   N  
Sbjct: 15  AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQ 70
Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
           D +G + +H AA  G +    VLV++GA V A D  G   +H+A + G +S ++ +  + 
Sbjct: 71  DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 129
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
            +D    D  G +PL  A  +G  + + +L
Sbjct: 130 -SDLHHRDASGLTPLELARQRGAQNLMDIL 158

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 97  LHWAAVRGSIA-VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA 155
           L  AA RG +  V  +L +     +A +  G  A+ V   +G  +    ++ K  A  + 
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSPAVALELL-KQGASPNV 69
Query: 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215
            D  G SP+H AA  GF DT+++L+   A     D  G  P+H A   G+    + L   
Sbjct: 70  QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--- 126
Query: 216 GTKQELTAKDKAGLTPTQLAYDKGHRQV 243
             + +L  +D +GLTP +LA  +G + +
Sbjct: 127 APESDLHHRDASGLTPLELARQRGAQNL 154

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 167 AAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDK 226
           AA  G  D +R+L+   A    +DKDG TPLH AA  G++E   VL+ AG   ++ A+DK
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--DVNAQDK 66
Query: 227 AGLTPTQLAYDKGHRQVALYLSNA 250
            G T   ++ D G+  +A  L  A
Sbjct: 67  FGKTAFDISIDNGNEDLAEILQKA 90

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYF---ALQWAALNNFADIAQYIIDHGGDVNAT 89
           A+A GD +++R+ +  +   +  PD    F   ALQ     + A +A  ++  G   N  
Sbjct: 17  AAARGDVQEVRRLLHRE---LVHPDALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQ 72
Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
           D +G + +H AA  G +    VLV++GA V A D  G   +H+A + G +S ++ +  + 
Sbjct: 73  DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 131
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLL 179
            +D    D  G +PL  A  +G  + + +L
Sbjct: 132 -SDLHHRDASGLTPLELARQRGAQNLMDIL 160

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 97  LHWAAVRGSIA-VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA 155
           L  AA RG +  V  +L +     +A +  G  A+ V   +G  +    ++ K  A  + 
Sbjct: 14  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSPAVALELL-KQGASPNV 71
Query: 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215
            D  G SP+H AA  GF DT+++L+   A     D  G  P+H A   G+    + L   
Sbjct: 72  QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--- 128
Query: 216 GTKQELTAKDKAGLTPTQLAYDKGHRQV 243
             + +L  +D +GLTP +LA  +G + +
Sbjct: 129 APESDLHHRDASGLTPLELARQRGAQNL 156

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 32/164 (19%)
Query: 84  GDVNATDNNGQTALHWAA---VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS 140
           GD+   D NG TAL   A    R  +A A +LV+ GA+V   D  G              
Sbjct: 226 GDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKV---DYDGA------------- 269
Query: 141 FLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS-QGRQDKDGCTPLHW 199
                     A  D+   +GR+ LH+AA       ++ L+    S + +QD+DG TP+  
Sbjct: 270 ----------ARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXL 319
Query: 200 AALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           AA  G +E    L+  G   E  A D    T  QLA    H  +
Sbjct: 320 AAQEGRIEVVXYLIQQGASVE--AVDATDHTARQLAQANNHHNI 361

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 49  DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           +GA V+  D  G   L  A  +   +I + ++ +G DVNA D  G T LH AA  G + +
Sbjct: 36  NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI 95
Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYG 137
           A+VL+++GA V A D  G  A  ++   G
Sbjct: 96  AEVLLKHGADVNAQDKFGKTAFDISIGNG 124

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
           AA+ GQ   +  ++A   AD +A D  G +PL+ A   G  + + +LL   A     D  
Sbjct: 21  AARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI 79
Query: 193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
           G TPLH AA  G++E   VL+  G   ++ A+DK G T   ++   G+  +A
Sbjct: 80  GFTPLHLAAFIGHLEIAEVLLKHGA--DVNAQDKFGKTAFDISIGNGNEDLA 129

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 18/216 (8%)
Query: 27  VTDVFSASAYGDFEKLRKFVE---------EDGASVSRPDGNGYFALQWAALNNFADIAQ 77
           V  +  A A GD E +R  +E         ED  S + P+    F          A   +
Sbjct: 12  VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPE----FCHPLCQCPKCAPAQK 67
Query: 78  YIID---HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA 134
            +      G  VN T  +G + LH AA+ G   +  +L+++GA   A +      +H+A 
Sbjct: 68  RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC 127
Query: 135 QYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGC 194
           Q G    +  ++   +A  +  D  G +PL +A   G  + + LLL   AS    +  G 
Sbjct: 128 QQGHFQVVKCLL-DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGN 186
Query: 195 TPLHWAALRGNVEACT-VLVHAGTKQELTAKDKAGL 229
           T LH A +  +V     +L+H  + Q L  + +  +
Sbjct: 187 TALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV 222

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Query: 116 GARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADT 175
           G  V + D  G   +HVAA +G+   +  ++ K+ A+  A + +   PLH A  +G    
Sbjct: 78  GVNVTSQD--GSSPLHVAALHGRADLIP-LLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 176 IRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA 235
           ++ LL  +A   ++D  G TPL +A   G+ E   +L+  G    + A +  G T    A
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS--INASNNKGNTALHEA 192
Query: 236 YDKGH----RQVALYLSNAQHMHRNHWGDKICGRKTSDI 270
             + H      + L+ ++ Q +++       C  + S I
Sbjct: 193 VIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%)
Query: 29  DVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
           ++  A+  G+ EKL   +     +    DG     L  AA  N   I Q ++ HG DV+A
Sbjct: 27  ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 89  TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA 134
            D  G   LH A   G   V ++L+++GA V A D+  +  +H AA
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA 132

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 107/288 (37%), Gaps = 74/288 (25%)
Query: 41  KLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWA 100
           ++ + + + GA V   D  G   L  A      ++ + ++ HG  VNA D    T LH A
Sbjct: 72  RIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA 131
Query: 101 AVRGSIAVADVLVQNGARVEAADVHGYRAVHVA--------------------------- 133
           A +  + V  +L+ +GA     + HG  AV +A                           
Sbjct: 132 ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL 191
Query: 134 AQYGQTSFLNHI---------------VAKYH--------------ADYDASDNEGRSPL 164
           A+  +T  L  I               VA  H              A+ +  + +  +PL
Sbjct: 192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251
Query: 165 HWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAK 224
           H AA +   D + +L    A     D  G T LH AAL G+++ C +L+  G+   + + 
Sbjct: 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311
Query: 225 DKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGY 272
              G T  Q+    G+  V   LS +  M            +TSD+ Y
Sbjct: 312 Q--GFTAAQM----GNEAVQQILSESTPM------------RTSDVDY 341

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 6/163 (3%)
Query: 64  LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGA----RV 119
           L  A +     + + ++  G    A D +GQTA H A    S      L+ + A     +
Sbjct: 50  LHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109
Query: 120 EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD-NEGRSPLHWAAYKGFADTIRL 178
           EA +  G  A+HVA    +      ++ +  AD DA D   GRSPL  A        ++L
Sbjct: 110 EARNYDGLTALHVAVNT-ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 179 LLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQEL 221
           LL   A+   Q   G + LH A+ RG +     LV +G    L
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 167 AAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDK 226
           AA  G  D +R+L+   A    +DK+G TPLH AA  G++E   +L+ AG   ++ A+DK
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA--DVXAQDK 88
Query: 227 AGLTPTQLAYDKGHRQVA 244
            G T   ++ D G+  +A
Sbjct: 89  FGKTAFDISIDNGNEDLA 106

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 73/185 (39%), Gaps = 36/185 (19%)
Query: 65  QWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV 124
           Q AA      + +++      VN  D  G T L WA+  G I     L++ GA       
Sbjct: 8   QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD------ 61
Query: 125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA 184
                              HI+AK          E  S L  A+  G+ D + LLL RD 
Sbjct: 62  ------------------PHILAK----------ERESALSLASTGGYTDIVGLLLERDV 93
Query: 185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
                D +G TPL +A    +V+    L+  G   +LT +  +G TP  LA   G+R+V 
Sbjct: 94  DINIYDWNGGTPLLYAVRGNHVKCVEALLARGA--DLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 245 LYLSN 249
             + N
Sbjct: 152 QVIEN 156

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 167 AAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDK 226
           AA  G  D +R+L+   A    +DK+G TPLH AA  G++E   +L+ AG   ++ A+DK
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA--DVNAQDK 70
Query: 227 AGLTPTQLAYDKGHRQVA 244
            G T   ++ D G+  +A
Sbjct: 71  FGKTAFDISIDNGNEDLA 88

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 5/182 (2%)
Query: 70  NNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV---EAADVHG 126
           N F  + + +      +   D +G+  LHW+    +  +   L+     V   +  D  G
Sbjct: 13  NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 127 YRAVHVAAQYGQTSFLNHIVAK-YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
           +   H+A   G    +  +  +    D +   N+G + LH A  K + +  + L+   AS
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL 245
              +DK    PLH AA  G+++   +L   G K  +  +DK G TP   A  +GH   A+
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 246 YL 247
            L
Sbjct: 192 LL 193

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 80  IDHGGDVNATDNNGQ---TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136
           + HG DVN   N GQ   T L  A    S+   + L+QNGA V  AD  G   +H A   
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF-----RDASQGR 188
           G T  L  +  K  AD  A D+EGR PL  A     AD + LL        +A+QG+
Sbjct: 279 GHTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 80  IDHGGDVNATDNNGQ---TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136
           + HG DVN   N GQ   T L  A    S+   + L+QNGA V  AD  G   +H A   
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF-----RDASQGR 188
           G T  L  +  K  AD  A D+EGR PL  A     AD + LL        +A+QG+
Sbjct: 279 GHTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 5/182 (2%)
Query: 70  NNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV---EAADVHG 126
           N F  + + +      +   D +G+  LHW+    +  +   L+     V   +  D  G
Sbjct: 13  NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 127 YRAVHVAAQYGQTSFLNHIVAK-YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
           +   H+A   G    +  +  +    D +   N+G + LH A  K + +  + L+   AS
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL 245
              +DK    PLH AA  G+++   +L   G K  +  +DK G TP   A  +GH   A+
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 246 YL 247
            L
Sbjct: 192 LL 193

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 80  IDHGGDVNATDNNGQ---TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136
           + HG DVN   N GQ   T L  A    S+   + L+QNGA V  AD  G   +H A   
Sbjct: 220 LAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF-----RDASQGR 188
           G T  L  +  K  AD  A D+EGR PL  A     AD + LL        +A+QG+
Sbjct: 279 GHTG-LACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 73/185 (39%), Gaps = 36/185 (19%)
Query: 65  QWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV 124
           Q AA      + +++      VN  D  G T L WA+  G I     L++ GA       
Sbjct: 8   QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD------ 61
Query: 125 HGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA 184
                              HI+AK          E  S L  A+  G+ D + LLL RD 
Sbjct: 62  ------------------PHILAK----------ERESALSLASTGGYTDIVGLLLERDV 93
Query: 185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
                D +G TPL +A    +V+    L+  G   +LT +  +G TP  LA   G+R+V 
Sbjct: 94  DINIYDWNGGTPLLYAVHGNHVKCVEALLARGA--DLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 245 LYLSN 249
             + N
Sbjct: 152 QVIEN 156

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 5/182 (2%)
Query: 70  NNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV---EAADVHG 126
           N F  + + +      +   D +G+  LHW+    +  +   L+     V   +  D  G
Sbjct: 13  NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG 72
Query: 127 YRAVHVAAQYGQTSFLNHIVAK-YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
           +   H+A   G    +  +  +    D +   N+G + LH A  K + +  + L+   AS
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL 245
              +DK    PLH AA  G+++   +L   G K  +  +DK G TP   A  +GH   A+
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 246 YL 247
            L
Sbjct: 192 LL 193

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
           +L+ NGA     D  G   +H+AAQYG  S    ++ +     DA     R+PLH AA +
Sbjct: 20  ILMANGAPF-TTDWLGTSPLHLAAQYGHFS-TTEVLLRAGVSRDARTKVDRTPLHMAASE 77
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
           G A+ + +LL   A    +D    T LHWA    + E   +L+  G   ++  + K   T
Sbjct: 78  GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA--DVHTQSKFCKT 135
Query: 231 PTQLAYDKGHRQVALYL 247
              ++ D G+  +A  L
Sbjct: 136 AFDISIDNGNEDLAEIL 152

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 27  VTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV 86
           + D+F+    G+   +R +++     +++ D +G+  L WA     + + + +I  G  +
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 87  NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
           N  +    T LH AA  G   +   L+Q  A + A + HG   +H A  +GQ      +V
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Query: 147 A 147
           A
Sbjct: 126 A 126

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV 211
           D +  D+ G SPLHWA  +G +  + +L+ R A     ++   TPLH AA  G+ +    
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 212 LVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
           L+    K ++ A ++ G  P   A   G  QVA
Sbjct: 91  LLQ--YKADINAVNEHGNVPLHYACFWGQDQVA 121

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 27  VTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV 86
           + D+F+    G+   +R +++     +++ D +G+  L WA     + + + +I  G  +
Sbjct: 1   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 60
Query: 87  NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
           N  +    T LH AA  G   +   L+Q  A + A + HG   +H A  +GQ      +V
Sbjct: 61  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Query: 147 A 147
           A
Sbjct: 121 A 121

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV 211
           D +  D+ G SPLHWA  +G +  + +L+ R A     ++   TPLH AA  G+ +    
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 212 LVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
           L+    K ++ A ++ G  P   A   G  QVA
Sbjct: 86  LLQ--YKADINAVNEHGNVPLHYACFWGQDQVA 116

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 14/211 (6%)
Query: 28  TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN 87
           + +  A+ +G    LR  + + G +V+    +    L  A L       + ++ HG  VN
Sbjct: 5   SPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 88  ATDNNGQTALHWAAVRGSIAVADVLVQNGARVE-AADVHGYRAVHVAAQYGQTSFLNHIV 146
               +  T L  A V GS    ++L+Q+GA V+  +D+     +H AA+ G    +N ++
Sbjct: 64  GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECVNSLI 121
Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR--DASQGR-QDKDGCTPLHWAALR 203
           A Y  + D   +   +PL+ A        ++ LL    D +QG+ QD    +PLH  A  
Sbjct: 122 A-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD----SPLHAVART 176
Query: 204 GNVEACTVLVHAGTKQELTAKDKAGLTPTQL 234
            + E   +L+  G   +  AK+  G  P +L
Sbjct: 177 ASEELACLLMDFGADTQ--AKNAEGKRPVEL 205

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 22/191 (11%)
Query: 69  LNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGA-RVEAADVHGY 127
           L  F  ++  ++D+   VN  D+NG TALH++    +  V   L+ +G  +V+  +  GY
Sbjct: 89  LVTFRAMSARLLDYV--VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGY 146
Query: 128 RAVHVAA-----------QYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
             + + A              Q   L +I AK       +   G++ L  A   G  D +
Sbjct: 147 SPIMLTALATLKTQDDIETVLQLFRLGNINAK-------ASQAGQTALMLAVSHGRVDVV 199
Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
           + LL  +A    QD DG T L  A   G+ E   +L+ A    +++  D+ G T   +A 
Sbjct: 200 KALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL-AVPSCDISLTDRDGSTALMVAL 258
Query: 237 DKGHRQVALYL 247
           D G  ++A  L
Sbjct: 259 DAGQSEIASML 269

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 38/165 (23%)
Query: 80  IDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139
           I+    +N TD  G T L WAA  G IAV + L+QNGA  +                   
Sbjct: 23  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL----------------- 65
Query: 140 SFLNHIVAKYHADYDASDNEGR-SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLH 198
                              +GR S L  A  KG+ D +++LL         D +G TPL 
Sbjct: 66  ------------------GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 107
Query: 199 WAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           +A    +V+   +L+ +G   + T +  +G     LA   G+R V
Sbjct: 108 YAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 150

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 64  LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR----- 118
           L  A + N  +IA+ ++  G D    D  G T LH A  +G +A   VL Q+        
Sbjct: 46  LHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 105
Query: 119 -VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN-EGRSPLHWAAYKGFADTI 176
            ++A + +G+  +H+A+ +G    +  +V+   AD +A +   GR+ LH A      D +
Sbjct: 106 ILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 177 RLLLFRDASQGRQDKDGCTP 196
            LLL   A   R    G +P
Sbjct: 165 SLLLKCGADVNRVTYQGYSP 184

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 8/159 (5%)
Query: 86  VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI 145
           +N  +N  QT LH A +     +A+ L+  G   E  D  G   +H+A + G  + +  +
Sbjct: 35  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 146 VAK-----YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDK-DGCTPLHW 199
                    H+   A++  G + LH A+  G+   + LL+   A    Q+  +G T LH 
Sbjct: 95  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 154
Query: 200 AALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK 238
           A    N +  ++L+  G   ++      G +P QL + +
Sbjct: 155 AVDLQNPDLVSLLLKCGA--DVNRVTYQGYSPYQLTWGR 191

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 6/191 (3%)
Query: 30  VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
           +  A+   D +K+++ +++    V   D  G   L  A  NN  +IA+ +ID G D+N  
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAK 148
           ++   +   +A  +G   +   ++++    +   + +G  A+  AA+ G    +  ++  
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128
Query: 149 YHADYDASDNEGRSPLHWA-----AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALR 203
              D D  ++ G + L  A       + + D ++LL+   A Q  +D  G T + +A  +
Sbjct: 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK 188
Query: 204 GNVEACTVLVH 214
           G  E   +L  
Sbjct: 189 GYTEISKILAQ 199

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 38/165 (23%)
Query: 80  IDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139
           I+    +N TD  G T L WAA  G IAV + L+QNGA  +                   
Sbjct: 39  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL----------------- 81
Query: 140 SFLNHIVAKYHADYDASDNEGR-SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLH 198
                              +GR S L  A  KG+ D +++LL         D +G TPL 
Sbjct: 82  ------------------GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 123
Query: 199 WAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           +A    +V+   +L+ +G   + T +  +G     LA   G+R V
Sbjct: 124 YAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 166

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 38/165 (23%)
Query: 80  IDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139
           I+    +N TD  G T L WAA  G IAV + L+QNGA  +                   
Sbjct: 21  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL----------------- 63
Query: 140 SFLNHIVAKYHADYDASDNEGR-SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLH 198
                              +GR S L  A  KG+ D +++LL         D +G TPL 
Sbjct: 64  ------------------GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 105
Query: 199 WAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           +A    +V+   +L+ +G   + T +  +G     LA   G+R V
Sbjct: 106 YAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSV 148

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 64  LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR----- 118
           L  A + N  +IA+ ++  G D    D  G T LH A  +G +A   VL Q+        
Sbjct: 49  LHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108
Query: 119 -VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN-EGRSPLHWAAYKGFADTI 176
            ++A + +G+  +H+A+ +G    +  +V+   AD +A +   GR+ LH A      D +
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 177 RLLLFRDASQGRQDKDGCTP 196
            LLL   A   R    G +P
Sbjct: 168 SLLLKCGADVNRVTYQGYSP 187

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 13/179 (7%)
Query: 86  VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI 145
           +N  +N  QT LH A +     +A+ L+  G   E  D  G   +H+A + G  + +  +
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 146 VAK-----YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDK-DGCTPLHW 199
                    H+   A++  G + LH A+  G+   + LL+   A    Q+  +G T LH 
Sbjct: 98  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157
Query: 200 AALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV-----ALYLSNAQHM 253
           A    N +  ++L+  G   ++      G +P QL + +   ++      L L N Q +
Sbjct: 158 AVDLQNPDLVSLLLKCGA--DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML 214

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 17/216 (7%)
Query: 26  AVTD---VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH 82
           AV+D   +  A+ +G    LR  + + G +V+    +    L  A L       + ++ H
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKH 114
Query: 83  GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA-ADVHGYRAVHVAAQYGQTSF 141
           G  VN    +  T L  A V GS    ++L+Q+GA V+  +D+     +H AA+ G    
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVEC 172
Query: 142 LNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR--DASQGR-QDKDGCTPLH 198
           +N ++A Y  + D   +   +PL+ A        ++ LL    D +QG+ QD    +PLH
Sbjct: 173 VNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD----SPLH 227
Query: 199 WAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQL 234
                 + E   +L+  G   +  AK+  G  P +L
Sbjct: 228 AVVRTASEELACLLMDFGADTQ--AKNAEGKRPVEL 261

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 34/225 (15%)
Query: 28  TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV- 86
           + +  A+   D + L K ++ +G  V +    G  AL  AAL +  + A  +++   ++ 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 87  ----NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
                +    GQTALH A +  ++ +   L+  GA V A      RA      Y   + +
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA------RATGSVFHYRPHNLI 118
Query: 143 NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL 202
            +               G  PL +AA  G  + +RLL+   A    QD  G T LH   L
Sbjct: 119 YY---------------GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163
Query: 203 RGN-VEAC----TVLVHAG---TKQELTAKDKAGLTPTQLAYDKG 239
           + N   AC     +L + G    K      +  GLTP +LA  +G
Sbjct: 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 23  NQAAVTDVFSASAYGDFEKLRKFVEE-DGASVSRPDGNGYFALQWAALNNFADIAQYIID 81
           N   +  +  +S  G+F+ +++ + E D  S+  P+  G  AL  A      +I ++++ 
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL--PNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 82  HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA 121
            G +VNA D++G T LH AA   ++ V   LV++GA V A
Sbjct: 92  FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTP 196
           G+   +  I+ +   D    ++EG + LH A   G  + ++ L+    +    D DG TP
Sbjct: 48  GEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 197 LHWAALRGNVEACTVLVHAGTKQ-ELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252
           LH AA   NV+ C  LV +G     +T  D           ++G+ Q + +L   Q 
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 30  VFSASAYGDFEKLRKFVEE-DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA 88
           +  +S  G+F+ +++ + E D  S+  P+  G  AL  A      +I ++++  G +VNA
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSL--PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 89  TDNNGQTALHWAAVRGSIAVADVLVQNGARVEA 121
            D++G T LH AA   ++ V   LV++GA V A
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTP 196
           G+   +  I+ +   D    ++EG + LH A   G  + ++ L+    +    D DG TP
Sbjct: 48  GEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 197 LHWAALRGNVEACTVLVHAGTKQ-ELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH 252
           LH AA   NV+ C  LV +G     +T  D           ++G+ Q + +L   Q 
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA+    D  G+  +  AA   F D  Q ++++  DVN  DN G   LH AA  G + V 
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 110 DVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
           + LV++ A  V   +  G  A  +A  YG+    N +V+   A+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLMQAN 159

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
           A+ D  D  G + +H AA  GF DT++ LL   A    +D +G  PLH AA  G++    
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
            LV   T   +  ++  G T   LA   G  +V
Sbjct: 121 FLVKH-TASNVGHRNHKGDTACDLARLYGRNEV 152

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 99  WAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN 158
           WA   G +      V  G  V      G + +H AA  GQ   L  ++ K  AD +A D 
Sbjct: 8   WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDK 66
Query: 159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
              +PL  A Y+G    ++LLL + A +  +  DG T L
Sbjct: 67  HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA+    D  G+  +  AA   F D  Q +++   DVN  DN G   LH AA  G + V 
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 110 DVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
           + LV++ A  V   +  G  A  +A  YG+    N +V+   A+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLMQAN 159

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
           A+ D  D  G + +H AA  GF DT++ LL   A    +D +G  PLH AA  G++    
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
            LV   T   +  ++  G T   LA   G  +V
Sbjct: 121 FLVKH-TASNVGHRNHKGDTACDLARLYGRNEV 152

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
           A+ D  D  G + +H AA  GF DT++ LL   A    +D +G  PLH AA  G++    
Sbjct: 61  ANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
            LV   T   +  ++  G T   LA   G  +V
Sbjct: 121 FLVKH-TASNVGHRNHKGDTACDLARLYGRNEV 152

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEAC 209
           HAD +A D+ G+S LHWAA     D   +LL   A++  Q+    TPL  AA  G+ E  
Sbjct: 38  HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETA 97
Query: 210 TVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
            VL+     +++T  D     P  +A ++ H  +   L
Sbjct: 98  KVLLDHFANRDIT--DHMDRLPRDIAQERMHHDIVRLL 133

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA+    D  G+  +  AA   F D  Q +++   DVN  DN G   LH AA  G + V 
Sbjct: 60  GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 110 DVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
           + LV++ A  V   +  G  A  +A  YG+    N +V+   A+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLMQAN 159

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
           A+ D  D  G + +H AA  GF DT++ LL   A    +D +G  PLH AA  G++    
Sbjct: 61  ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
            LV   T   +  ++  G T   LA   G  +V
Sbjct: 121 FLVKH-TASNVGHRNHKGDTACDLARLYGRNEV 152

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 8/180 (4%)
Query: 30  VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
           +  A+  G+ E +++ V+E     S+P+  G  AL  A       I  ++I  G +VN+ 
Sbjct: 25  LLDAALTGELEVVQQAVKEMN-DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSP 83
Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAK 148
           D++G T LH AA      +   LVQ+GA + A  +  G  A      Y +  + +   A 
Sbjct: 84  DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPY-REGYAD--CAT 140
Query: 149 YHADYDAS---DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGN 205
           Y AD + S    N G     W     F D +        +  R+D    T   WAAL G 
Sbjct: 141 YLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQ 200

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
           G  +  R LL R A+   +D+ G   +H AA  G ++    L+    + ++  +D  G  
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLE--FQADVNIEDNEGNL 105
Query: 231 PTQLAYDKGHRQVALYL---SNAQHMHRNHWGDKIC 263
           P  LA  +GH +V  +L   + +   HRNH GD  C
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 75  IAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYRAVHVA 133
           ++Q + D   DV+A D NG+TAL + A  GS     +L + GA ++  D+  G  A+H+A
Sbjct: 60  LSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
           A Y +   +  +V +  AD +  D  G + L  A
Sbjct: 118 AGYVRPEVVEALV-ELGADIEVEDERGLTALELA 150

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 34/130 (26%)
Query: 66  WAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
           WA  N   D  +  +  G DVN T   G+  LH+AA  G + + + L+  GA + A D H
Sbjct: 13  WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 126 GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
                             HI                +PL  A Y+G    ++LLL + A 
Sbjct: 73  ------------------HI----------------TPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 186 QGRQDKDGCT 195
           +  +  DG T
Sbjct: 99  KTVKGPDGLT 108

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 97  LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS 156
           LH AA RG+++     + N   V   D  G  A++ A   G    +  +  + + + +  
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDA 184
           +  G + LH AA+KG+AD ++LLL + A
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGA 164

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 75  IAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYRAVHVA 133
           ++Q + D   DV+A D NG+TAL + A  GS     +L + GA ++  D+  G  A+H+A
Sbjct: 61  LSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118
Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
           A Y +   +  +V +  AD +  D  G + L  A
Sbjct: 119 AGYVRPEVVEALV-ELGADIEVEDERGLTALELA 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	541
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-57
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-48
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-44
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-54
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-54
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-53
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-52
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-49
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-42
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-53
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-51
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-47
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-38
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-50
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-43
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-42
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-25
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-50
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-46
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-42
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-34
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-50
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-49
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-49
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-42
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-50
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-43
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-42
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-49
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-49
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-40
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-49
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-49
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-40
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-39
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-48
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-48
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-45
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-47
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-43
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-39
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-39
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-35
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-47
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-43
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-47
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-44
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-40
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-46
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-46
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-46
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-45
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-42
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-40
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-46
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-45
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-32
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-45
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-42
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-39
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-38
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-45
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-36
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-45
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-37
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-44
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-39
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-44
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-43
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-42
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-42
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-42
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-39
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-38
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-42
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-42
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-41
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-36
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-41
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-41
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-41
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-41
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-40
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-10
2rfa_A	232	Transient receptor potential cation channel subfa	2e-39
2rfa_A	232	Transient receptor potential cation channel subfa	4e-26
2rfa_A	232	Transient receptor potential cation channel subfa	3e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-37
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-36
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-27
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-36
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-33
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-34
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-26
2etb_A	256	Transient receptor potential cation channel subfam	4e-34
2etb_A	256	Transient receptor potential cation channel subfam	4e-31
2etb_A	256	Transient receptor potential cation channel subfam	4e-15
2etb_A	256	Transient receptor potential cation channel subfam	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	4e-34
2pnn_A	273	Transient receptor potential cation channel subfa	2e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-33
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-33
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-27
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-32
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-31
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-30
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-25
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-29
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-27
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-29
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-26
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-22
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-25
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-18
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  189 bits (482), Expect = 7e-57
 Identities = 76/227 (33%), Positives = 111/227 (48%), Gaps = 15/227 (6%)

Query: 28  TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN 87
            D+  A+ YG +E+ R+ VE  G  V +PD      L WAA+NN  D+ +Y I  G  V+
Sbjct: 11  WDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69

Query: 88  ATDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
               +   T LHWA  +G +++   L++ GA     D  G   +H+AAQ+G TS     +
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS-----I 124

Query: 147 AKY---H-ADYDASDNEGRSPLHWAAYKGF-ADTIRLLLFRDASQGRQDK-DGCTPLHWA 200
             Y      D D  D  G +PL WAAY+    D  RLLL  + S    DK    T LHWA
Sbjct: 125 VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA 184

Query: 201 ALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
            L GN    ++L+ AG    + A++  G +   LA  + +  +  +L
Sbjct: 185 VLAGNTTVISLLLEAGA--NVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  166 bits (423), Expect = 3e-48
 Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 14/202 (6%)

Query: 53  VSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVL 112
           ++  D    + +  A      +  + +++ G DV   D    T LHWAA+   I +    
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 113 VQNGARVEAADV-HGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWA 167
           +  GA V+          +H A + G  S     +      + AD    D EG S +H A
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLS-----MVVQLMKYGADPSLIDGEGCSCIHLA 116

Query: 168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGN-VEACTVLVHAGTKQELTAKDK 226
           A  G    +  L+ +       D++G TPL WAA R + V+   +L+       +   DK
Sbjct: 117 AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV--SVNLGDK 174

Query: 227 A-GLTPTQLAYDKGHRQVALYL 247
               T    A   G+  V   L
Sbjct: 175 YHKNTALHWAVLAGNTTVISLL 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  156 bits (398), Expect = 1e-44
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 12/178 (6%)

Query: 50  GASVSRPDGN-GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           GA V +  G+     L WA       +   ++ +G D +  D  G + +H AA  G  ++
Sbjct: 65  GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSI 124

Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY----HADYDASDN-EGRS 162
              L+  G  V+  D +G   +  AA        + +   +     +   +  D     +
Sbjct: 125 VAYLIAKGQDVDMMDQNGMTPLMWAAYRT-----HSVDPTRLLLTFNVSVNLGDKYHKNT 179

Query: 163 PLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQE 220
            LHWA   G    I LLL   A+   Q+  G + L  A  R NV     L  A   + 
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  129 bits (328), Expect = 9e-35
 Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 12/178 (6%)

Query: 19  NQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQY 78
           +Q       T +  A+  G    + + ++  GA  S  DG G   +  AA      I  Y
Sbjct: 69  DQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAY 127

Query: 79  IIDHGGDVNATDNNGQTALHWAAVRG-SIAVADVLVQNGARVEAAD-VHGYRAVHVAAQY 136
           +I  G DV+  D NG T L WAA R  S+    +L+     V   D  H   A+H A   
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187

Query: 137 GQTSFLNHIVAKY----HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD 190
           G T+     V        A+ DA + +G S L  A  +     I  L     ++G  +
Sbjct: 188 GNTT-----VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  188 bits (480), Expect = 3e-54
 Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 12/219 (5%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A  + + + ++  +   G S   P  NGY  L  AA  N  ++A+ ++ +GG  NA    
Sbjct: 186 AVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 244

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY--- 149
           G T LH AA  G   +  +L+   A     +  G   +H+ AQ G     +  VA     
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG-----HVPVADVLIK 299

Query: 150 -HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEA 208
                DA+   G +PLH A++ G    ++ LL   A    + K G +PLH AA +G+ + 
Sbjct: 300 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 359

Query: 209 CTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
            T+L+  G           G TP  +A   G+  V   L
Sbjct: 360 VTLLLKNGA--SPNEVSSDGTTPLAIAKRLGYISVTDVL 396

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  187 bits (477), Expect = 7e-54
 Identities = 61/219 (27%), Positives = 93/219 (42%), Gaps = 12/219 (5%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           AS  G    ++  ++  GAS +  +      L  AA     ++A+Y++ +   VNA   +
Sbjct: 21  ASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 79

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY--- 149
            QT LH AA  G   +  +L++N A    A   G+  +H+AA+ G               
Sbjct: 80  DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE-----TVLALLE 134

Query: 150 -HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEA 208
             A       +G +PLH AA  G      LLL RDA      K+G TPLH A    N++ 
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI 194

Query: 209 CTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
             +L+  G      +    G TP  +A  +   +VA  L
Sbjct: 195 VKLLLPRGG--SPHSPAWNGYTPLHIAAKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  185 bits (471), Expect = 6e-53
 Identities = 61/203 (30%), Positives = 89/203 (43%), Gaps = 13/203 (6%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           G S      +G   L  A+      I + ++  G   N ++   +T LH AA  G   VA
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY----HADYDASDNEGRSPL 164
             L+QN A+V A        +H AA+ G      H  + K     +A+ + +   G +PL
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIG------HTNMVKLLLENNANPNLATTAGHTPL 117

Query: 165 HWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAK 224
           H AA +G  +T+  LL ++ASQ    K G TPLH AA  G V    +L+         A 
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN--AA 175

Query: 225 DKAGLTPTQLAYDKGHRQVALYL 247
            K GLTP  +A    +  +   L
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  184 bits (469), Expect = 1e-52
 Identities = 58/219 (26%), Positives = 89/219 (40%), Gaps = 12/219 (5%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+  G    ++  +E   A+ +     G+  L  AA     +    +++           
Sbjct: 87  AARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK 145

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY--- 149
           G T LH AA  G + VA++L++  A   AA  +G   +HVA  +      N  + K    
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN-----NLDIVKLLLP 200

Query: 150 -HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEA 208
                 +    G +PLH AA +   +  R LL    S   +   G TPLH AA  G+ E 
Sbjct: 201 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM 260

Query: 209 CTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
             +L+           +K+GLTP  L   +GH  VA  L
Sbjct: 261 VALLLSKQA--NGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  175 bits (446), Expect = 2e-49
 Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 17/208 (8%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           G S +     G   L  AA    A++   ++    + N  + +G T LH  A  G + VA
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA 294

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY----HADYDASDNEGRSPLH 165
           DVL+++G  V+A    GY  +HVA+ YG        + K+     AD +A    G SPLH
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIK-----LVKFLLQHQADVNAKTKLGYSPLH 349

Query: 166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ-ELTAK 224
            AA +G  D + LLL   AS      DG TPL  A   G +    VL     +   +   
Sbjct: 350 QAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVS 409

Query: 225 DKAGLTPTQLAY-------DKGHRQVAL 245
           DK  ++  +          D+G   ++ 
Sbjct: 410 DKHRMSFPETVDEILDVSEDEGEELISF 437

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  156 bits (398), Expect = 1e-42
 Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 82  HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSF 141
            G        +G T LH A+  G + +   L+Q GA    ++V     +H+AA+ G T  
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE- 61

Query: 142 LNHIVAKY----HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
               VAKY     A  +A   + ++PLH AA  G  + ++LLL  +A+       G TPL
Sbjct: 62  ----VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117

Query: 198 HWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           H AA  G+VE    L+     Q      K G TP  +A   G  +VA  L
Sbjct: 118 HIAAREGHVETVLALLEKEASQA--CMTKKGFTPLHVAAKYGKVRVAELL 165

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  179 bits (458), Expect = 2e-53
 Identities = 64/224 (28%), Positives = 95/224 (42%), Gaps = 15/224 (6%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+  G  +     V+  GA++     +    L  AA NN  +  +Y+I  G  V+  D  
Sbjct: 18  AAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE 76

Query: 93  GQTALHWAAVRGSIAVADVLVQNGAR-VEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY- 149
           G T LH AA +G   V   L+ NG   V   D  G+  +  A +Y       H+ + K  
Sbjct: 77  GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK------HVDLVKLL 130

Query: 150 --H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV 206
               +D +  DNE    LHWAA+ G  D   +LL         +  G +PLH AA     
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY 190

Query: 207 EACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
           +   + +   +  ++T K+K G TP Q A        AL +S A
Sbjct: 191 DCVVLFLSRDS--DVTLKNKEGETPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  173 bits (442), Expect = 4e-51
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 2/191 (1%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG 116
             N    L  AA     DI   ++  G +++    + +T L  AA    +     L++ G
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 117 ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
           A V+  D  G   +H+AA+ G    + ++++    D +  D+ G +P+ WA      D +
Sbjct: 68  ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127

Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
           +LLL + +    +D +    LHWAA  G V+   +L+ A    +L A +  G +P  +A 
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC--DLHAVNIHGDSPLHIAA 185

Query: 237 DKGHRQVALYL 247
            +      +  
Sbjct: 186 RENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  162 bits (413), Expect = 8e-47
 Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 10/172 (5%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHG-GDVNATDNNGQTALHWAAVRGSIAV 108
           GA V   D  G   L  AA     ++ QY++ +G  DVN  D+ G T + WA     + +
Sbjct: 67  GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126

Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY----HADYDASDNEGRSPL 164
             +L+  G+ +   D      +H AA  G        +A+       D  A +  G SPL
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVD-----IAEILLAAKCDLHAVNIHGDSPL 181

Query: 165 HWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
           H AA +   D + L L RD+    ++K+G TPL  A+L   V +   +  A 
Sbjct: 182 HIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  139 bits (354), Expect = 2e-38
 Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 22/173 (12%)

Query: 85  DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNH 144
           +      N ++ LH AA  G + +  +LVQ GA ++         +  AA+        H
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN------H 56

Query: 145 I-VAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQG-----RQDKDGC 194
           +   KY     A  D  D EG + LH AA KG  + ++ LL    S G      QD  G 
Sbjct: 57  LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL----SNGQMDVNCQDDGGW 112

Query: 195 TPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           TP+ WA    +V+   +L+  G+  ++  +D         A   G   +A  L
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGS--DINIRDNEENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 88.6 bits (221), Expect = 4e-20
 Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEAC 209
           H ++       RSPLH AA  G  D   +L+   A+     +D  TPL  AA   ++EA 
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 210 TVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
             L+ AG   +   KD  G T   LA  KGH +V  YL
Sbjct: 61  KYLIKAGALVD--PKDAEGSTCLHLAAKKGHYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.5 bits (200), Expect = 2e-17
 Identities = 13/68 (19%), Positives = 24/68 (35%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
              +   + +G   L  AA  N  D     +    DV   +  G+T L  A++   +  A
Sbjct: 167 KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSA 226

Query: 110 DVLVQNGA 117
             + +   
Sbjct: 227 LQMSKALQ 234

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  173 bits (441), Expect = 1e-50
 Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 13/204 (6%)

Query: 50  GASVS-RPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           GAS+  + D  G  AL  AA  + +D A+ +++   D N  DN G+T LH A    +  V
Sbjct: 46  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 105

Query: 109 ADVLVQNGAR-VEAADVHGYRAVHVAAQYGQTSFLNHIVAKY----HADYDASDNEGRSP 163
             +L++N A  ++A    G   + +AA+          + +     HAD +A D+ G+S 
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLA-----VEGMLEDLINSHADVNAVDDLGKSA 160

Query: 164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTA 223
           LHWAA     D   +LL   A++  Q+    TPL  AA  G+ E   VL+          
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA--NRDI 218

Query: 224 KDKAGLTPTQLAYDKGHRQVALYL 247
            D     P  +A ++ H  +   L
Sbjct: 219 TDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  154 bits (392), Expect = 1e-43
 Identities = 52/196 (26%), Positives = 73/196 (37%), Gaps = 13/196 (6%)

Query: 58  GNGYFALQWAALNNFADIAQYIIDHGGDV-NATDNNGQTALHWAAVRGSIAVADVLVQNG 116
           G G          +   +    I  G  + N TD  G+TALH AA       A  L++  
Sbjct: 21  GGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS 80

Query: 117 ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY---H--ADYDASDNEGRSPLHWAAYKG 171
           A     D  G   +H A            V +    +   D DA  ++G +PL  AA   
Sbjct: 81  ADANIQDNMGRTPLHAAVSADAQG-----VFQILIRNRATDLDARMHDGTTPLILAARLA 135

Query: 172 FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTP 231
               +  L+   A     D  G + LHWAA   NV+A  VL+  G       ++    TP
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA--NKDMQNNREETP 193

Query: 232 TQLAYDKGHRQVALYL 247
             LA  +G  + A  L
Sbjct: 194 LFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  151 bits (385), Expect = 1e-42
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 10/172 (5%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAAVRGSIAV 108
            A  +  D  G   L  A   +   + Q +I +   D++A  ++G T L  AA      +
Sbjct: 80  SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM 139

Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPL 164
            + L+ + A V A D  G  A+H AA        N   A     + A+ D  +N   +PL
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVN-----NVDAAVVLLKNGANKDMQNNREETPL 194

Query: 165 HWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
             AA +G  +T ++LL   A++   D     P   A  R + +   +L    
Sbjct: 195 FLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  122 bits (310), Expect = 5e-32
 Identities = 46/186 (24%), Positives = 68/186 (36%), Gaps = 34/186 (18%)

Query: 85  DVNATDNNGQTALHWAAVRG-------------SIAVADVLVQNGARVEAA-DVHGYRAV 130
           DVN    +G T L  A+  G             + AV    +  GA +    D  G  A+
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 131 HVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQ 186
           H+AA+Y          AK      AD +  DN GR+PLH A         ++L+      
Sbjct: 62  HLAARYS-----RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI----RN 112

Query: 187 G-----RQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHR 241
                  +  DG TPL  AA          L+++    ++ A D  G +    A    + 
Sbjct: 113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA--DVNAVDDLGKSALHWAAAVNNV 170

Query: 242 QVALYL 247
             A+ L
Sbjct: 171 DAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  103 bits (259), Expect = 4e-25
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
            A V+  D  G  AL WAA  N  D A  ++ +G + +  +N  +T L  AA  GS   A
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 206

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
            VL+ + A  +  D        +A +       +H + +         + 
Sbjct: 207 KVLLDHFANRDITDHMDRLPRDIAQERM-----HHDIVRLLDLEHHHHHH 251

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  171 bits (436), Expect = 4e-50
 Identities = 54/227 (23%), Positives = 84/227 (37%), Gaps = 19/227 (8%)

Query: 33  ASAYGDFEKLRKFVEED---GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
           A   G+   + + V      G  +   +      L  A +     + + ++  G    A 
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGAR----VEAADVHGYRAVHVAAQYGQTSFLNHI 145
           D +GQTA H A    S      L+ + A     +EA +  G  A+HVA            
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE-----CQE 130

Query: 146 VAKY---H-ADYDASD-NEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA 200
             +      AD DA D   GRSPL  A        ++LLL   A+   Q   G + LH A
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

Query: 201 ALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           + RG +     LV +G   + + K+    TP  +A  +    +    
Sbjct: 191 SGRGLLPLVRTLVRSGA--DSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  162 bits (412), Expect = 1e-46
 Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 10/199 (5%)

Query: 57  DGNGYFALQWAALNNFADIAQYIID----HGGDVNATDNNGQTALHWAAVRGSIAVADVL 112
           D +G   L  A +         +++     G +++  +N  QT LH A +    +V  +L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 113 VQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV---AKYHADYDASDNEGRSPLHWAAY 169
           V  GA   A D HG  A H+A ++   + L  ++   A    D +A + +G + LH A  
Sbjct: 66  VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125

Query: 170 KGFADTIRLLLFRDASQGRQD-KDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAG 228
               +T++LLL R A     D K G +PL  A    ++    +L+  G    + A+  +G
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA--NVNAQMYSG 183

Query: 229 LTPTQLAYDKGHRQVALYL 247
            +    A  +G   +   L
Sbjct: 184 SSALHSASGRGLLPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  149 bits (380), Expect = 5e-42
 Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 16/177 (9%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHG----GDVNATDNNGQTALHWAAVRGS 105
           GAS    D +G  A   A  +      + ++D       D+ A + +G TALH A     
Sbjct: 69  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128

Query: 106 IAVADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHI-VAKY----HADYDASDNE 159
                +L++ GA ++A D+  G   +  A +       N + + +      A+ +A    
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVEN------NSLSMVQLLLQHGANVNAQMYS 182

Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
           G S LH A+ +G    +R L+   A    ++    TPL  A  R  ++         
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  127 bits (322), Expect = 6e-34
 Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 20/175 (11%)

Query: 86  VNATDNNGQTALHWAAVRGSIAVADVLV----QNGARVEAADVHGYRAVHVAAQYGQTSF 141
               D +G T LH A V+G++     LV    Q G  ++  +      +H+A      S 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS- 60

Query: 142 LNHIVAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGR----QDKDG 193
               V +      A   A D  G++  H A        +R LL   A        ++ DG
Sbjct: 61  ----VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 194 CTPLHWAALRGNVEACTVLVHAGTKQELTAKD-KAGLTPTQLAYDKGHRQVALYL 247
            T LH A      E   +L+  G   ++ A D K+G +P   A +     +   L
Sbjct: 117 LTALHVAVNTECQETVQLLLERGA--DIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  124 bits (315), Expect = 7e-33
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 10/134 (7%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGDVNATD-NNGQTALHWAAVRGSIAVADVLVQN 115
           + +G  AL  A      +  Q +++ G D++A D  +G++ L  A    S+++  +L+Q+
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

Query: 116 GARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY----HADYDASDNEGRSPLHWAAYKG 171
           GA V A    G  A+H A+  G        + +      AD    +    +PL  A  + 
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLP-----LVRTLVRSGADSSLKNCHNDTPLMVARSRR 227

Query: 172 FADTIRLLLFRDAS 185
             D +R    R AS
Sbjct: 228 VIDILRGKATRPAS 241

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  170 bits (434), Expect = 5e-50
 Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 13/204 (6%)

Query: 50  GASVS-RPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           GAS+  + D  G  AL  AA  + +D A+ +++   D N  DN G+T LH A    +  V
Sbjct: 14  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73

Query: 109 ADVLVQNGAR-VEAADVHGYRAVHVAAQYGQTSFLNHIVAKY----HADYDASDNEGRSP 163
             +L++N A  ++A    G   + +AA+          + +     HAD +A D+ G+S 
Sbjct: 74  FQILIRNRATDLDARMHDGTTPLILAARLAVEG-----MLEDLINSHADVNAVDDLGKSA 128

Query: 164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTA 223
           LHWAA     D   +LL   A++  Q+    TPL  AA  G+ E   VL+          
Sbjct: 129 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA--NRDI 186

Query: 224 KDKAGLTPTQLAYDKGHRQVALYL 247
            D     P  +A ++ H  +   L
Sbjct: 187 TDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  152 bits (387), Expect = 3e-43
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 10/172 (5%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAAVRGSIAV 108
            A  +  D  G   L  A   +   + Q +I +   D++A  ++G T L  AA      +
Sbjct: 48  SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM 107

Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPL 164
            + L+ + A V A D  G  A+H AA        N   A     + A+ D  +N   +PL
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVN-----NVDAAVVLLKNGANKDMQNNREETPL 162

Query: 165 HWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
             AA +G  +T ++LL   A++   D     P   A  R + +   +L    
Sbjct: 163 FLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  148 bits (377), Expect = 8e-42
 Identities = 50/184 (27%), Positives = 74/184 (40%), Gaps = 15/184 (8%)

Query: 71  NFADIAQYIIDHGGDV-NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRA 129
           +   +    I  G  + N TD  G+TALH AA       A  L++  A     D  G   
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 130 VHVAAQYGQTSFLNHI-VAKY---H--ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD 183
           +H A         +   V +    +   D DA  ++G +PL  AA       +  L+   
Sbjct: 62  LHAAVSA------DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115

Query: 184 ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           A     D  G + LHWAA   NV+A  VL+  G  ++   ++    TP  LA  +G  + 
Sbjct: 116 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLFLAAREGSYET 173

Query: 244 ALYL 247
           A  L
Sbjct: 174 AKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  129 bits (326), Expect = 1e-34
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 16/146 (10%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG 116
             +G   L  AA      + + +I+   DVNA D+ G++ALHWAA   ++  A VL++NG
Sbjct: 89  MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148

Query: 117 ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY----HADYDASDNEGRSPLHWAAYKGF 172
           A  +  +      + +AA+ G     ++  AK      A+ D +D+  R P   A  +  
Sbjct: 149 ANKDMQNNREETPLFLAAREG-----SYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203

Query: 173 ADTIRLLLFRDASQGRQDKDGCTPLH 198
            D +RLL   +             LH
Sbjct: 204 HDIVRLLDEYNL-------VRSPQLH 222

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  171 bits (436), Expect = 1e-49
 Identities = 49/223 (21%), Positives = 83/223 (37%), Gaps = 16/223 (7%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+ +G    LR  + + G +V+    +    L  A L       + ++ HG  VN    +
Sbjct: 66  AAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 124

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY-- 149
             T L  A V GS    ++L+Q+GA V+         +H AA+ G      H+       
Sbjct: 125 WHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG------HVECVNSLI 177

Query: 150 -H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE 207
            +  + D   +   +PL+ A        ++ LL   A    Q K   +PLH      + E
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEE 236

Query: 208 ACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
              +L+  G   +  AK+  G  P +L   +            
Sbjct: 237 LACLLMDFGA--DTQAKNAEGKRPVELVPPESPLAQLFLEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  171 bits (435), Expect = 2e-49
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 15/234 (6%)

Query: 17  NENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIA 76
           +    D +    D    +   DF  +R         +     + +  +  AA++      
Sbjct: 20  HMASMDGKQGGMDGSKPAGPRDFPGIR---LLSNPLMGD-AVSDWSPMHEAAIHGHQLSL 75

Query: 77  QYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136
           + +I  G  VN    +  + LH A + G ++   +L+++GA+V       +  +  A   
Sbjct: 76  RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS 135

Query: 137 GQTSFLNHIVAKYHADYDAS---DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
           G               + AS   +++  SP+H AA +G  + +  L+    +   +    
Sbjct: 136 GSWD-----CVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 190

Query: 194 CTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
            TPL+ A           L+ +G       + K   +P          ++A  L
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  146 bits (370), Expect = 4e-40
 Identities = 46/222 (20%), Positives = 73/222 (32%), Gaps = 21/222 (9%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
            S++         V   G+ ++  DG                    ++ +   +     +
Sbjct: 2   GSSHHHHHHSSGLVPR-GSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNP--LMGDAVS 58

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY--- 149
             + +H AA+ G       L+  G  V          +H A   G  S       K    
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS-----CVKILLK 113

Query: 150 H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQG---RQDKDGCTPLHWAALRGN 205
           H A  +    +  +PL  A   G  D + LLL      G   + + D  +P+H AA RG+
Sbjct: 114 HGAQVNGVTADWHTPLFNACVSGSWDCVNLLL----QHGASVQPESDLASPIHEAARRGH 169

Query: 206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           VE    L+  G   +   K     TP  LA +   R     L
Sbjct: 170 VECVNSLIAYGGNID--HKISHLGTPLYLACENQQRACVKKL 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A        ++K +E  GA V++        L         ++A  ++D G D  A +  
Sbjct: 197 ACENQQRACVKKLLES-GADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAE 254

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAA 122
           G+  +        +A    L + GA +   
Sbjct: 255 GKRPVELVPPESPLAQL-FLEREGASLPKP 283

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  166 bits (423), Expect = 3e-49
 Identities = 41/172 (23%), Positives = 62/172 (36%), Gaps = 9/172 (5%)

Query: 58  GNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGA 117
           G    ++   A           I+    +N TD  G T L WAA  G IAV + L+QNGA
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 118 RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKGFA 173
             +        A+ +A   G T      + K       D +  D  G +PL +A +    
Sbjct: 61  DPQLLGKGRESALSLACSKGYTD-----IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV 115

Query: 174 DTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKD 225
             +++LL   A    +   G   +  A   G      V+     K     K+
Sbjct: 116 KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  108 bits (273), Expect = 6e-28
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 34/143 (23%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA           AL  A    + DI + ++D G DVN  D NG T L +A     +   
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY 169
            +L+++GA                                        + G + +  A  
Sbjct: 119 KMLLESGADPTIE----------------------------------TDSGYNSMDLAVA 144

Query: 170 KGFADTIRLLLFRDASQGRQDKD 192
            G+    +++        +  K+
Sbjct: 145 LGYRSVQQVIESHLLKLLQNIKE 167

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  172 bits (437), Expect = 9e-49
 Identities = 50/236 (21%), Positives = 89/236 (37%), Gaps = 23/236 (9%)

Query: 33  ASAYGDFE-------KLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGD 85
            ++    E          K     GA V+  D +    L  A L     +  Y++  G D
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191

Query: 86  VNATDNNGQTALHWAAVRGSIAVADVLVQN---GARVEAADVHGYRAVHVAAQYGQTSF- 141
               + + ++ALH AA      +   ++ +      +E  D +G  A+ + A        
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251

Query: 142 ------LNH---IVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL-FRDASQGRQDK 191
                 +     +     A  D+   +GR+ LH+AA       ++ L+  + +++ +QD+
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 311

Query: 192 DGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           DG TP+  AA  G +E    L+  G    + A D    T  QLA    H  +    
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYLIQQGA--SVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  148 bits (377), Expect = 3e-40
 Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 10/195 (5%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG 116
                +       N    +  +   +       +      LH  A  GS A+ + + +  
Sbjct: 58  QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRES 116

Query: 117 ARVEAADVHGYRAVHVAAQYGQ---TSFLNHIVAKYH----ADYDASDNEGRSPLHWAAY 169
             +     H    +H  A       +  L    AK      AD +A D +  +PL  A  
Sbjct: 117 VNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVL 175

Query: 170 KGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV-HAGTKQELTAKDKAG 228
                 +  L+   A     +K   + LH AA   +      ++     K ++   D+ G
Sbjct: 176 ARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG 235

Query: 229 LTPTQLAYDKGHRQV 243
           +T   +      R  
Sbjct: 236 MTALMIVAHNEGRDQ 250

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  146 bits (370), Expect = 3e-39
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 14/185 (7%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDH---GGDVNATDNNGQTALHWAAVRGS- 105
           GA  +  + +   AL  AA N    +  Y+++     GD+   D NG TAL   A     
Sbjct: 189 GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR 248

Query: 106 --IAVADVLVQNGA--------RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA 155
             +A A +LV+ GA        R ++    G  A+H AAQ      + ++V +  ++ D 
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308

Query: 156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215
            D +G++P+  AA +G  + +  L+ + AS    D    T    A    +     +    
Sbjct: 309 QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 368

Query: 216 GTKQE 220
             ++E
Sbjct: 369 RPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  126 bits (318), Expect = 4e-32
 Identities = 33/214 (15%), Positives = 60/214 (28%), Gaps = 32/214 (14%)

Query: 47  EEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSI 106
           EE      +   +   +L  A+ + +              N   +            G+ 
Sbjct: 24  EEKNRKNHQSITSSQHSLLEASYDGYIKR---------QRNELQHYSLYPNPQGYGNGND 74

Query: 107 AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY----HADYDASDNEGR 161
            + D    N       +      +H  A            + +       +        R
Sbjct: 75  FLGDFNHTNLQIPTEPEPESPIKLHTEAA-------GSYAITEPITRESVNIID-PRHNR 126

Query: 162 SPLHWAAYKGFADTIRLLLFRDA----SQG----RQDKDGCTPLHWAALRGNVEACTVLV 213
           + LHW A    A+    L+  +A    + G      D D  TPL  A L         L+
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186

Query: 214 HAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
            AG   + T  +K+  +    A       + +Y+
Sbjct: 187 KAGA--DPTIYNKSERSALHQAAANRDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 87.3 bits (217), Expect = 7e-19
 Identities = 19/88 (21%), Positives = 34/88 (38%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+   +   ++  V E G++  + D +G   +  AA     ++  Y+I  G  V A D  
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT 345

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVE 120
             TA   A       + D+  +     E
Sbjct: 346 DHTARQLAQANNHHNIVDIFDRCRPERE 373

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  165 bits (420), Expect = 1e-48
 Identities = 39/174 (22%), Positives = 61/174 (35%), Gaps = 12/174 (6%)

Query: 63  ALQWAALNNFADIAQYIIDHGGD-VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA 121
           ++   A     D  +  +  G + VN  D  G T L WA+  G I     L++ GA    
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 122 ADVHGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIR 177
                  A+ +A+  G T      +         D +  D  G +PL +A        + 
Sbjct: 65  LAKERESALSLASTGGYTD-----IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 178 LLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTP 231
            LL R A    +   G TP+  A   G  +   V+ +   K  L   +     P
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK--LFQSNLVPADP 171

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  166 bits (424), Expect = 1e-48
 Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 28/232 (12%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA---T 89
           A    +F K+++ +    + + + D +G   L W+      +I  +++    +VN     
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68

Query: 90  DNNGQTALHWAAVRGSIAVADVLVQN--GARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
           D++G T  H A   G++ V   L        +      G   +H+A            V+
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE-----VS 123

Query: 148 KY----HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGR-----QDKDGCTPLH 198
           ++     A     D   + PLH AA  G    I LL       G+     QDK G TPL 
Sbjct: 124 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC----GLGKSAVNWQDKQGWTPLF 179

Query: 199 WAALRGNVEACTVLV-HAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSN 249
            A   G+ +A  +LV   G + +    D  G     +A ++  ++   +L+N
Sbjct: 180 HALAEGHGDAAVLLVEKYGAEYD--LVDNKGAKAEDVALNEQVKK--FFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  157 bits (401), Expect = 3e-45
 Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 18/199 (9%)

Query: 60  GYFALQWAALNN-FADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
             + L  A + N F  + + +      +   D +G+  LHW+    +  +   L+     
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 119 VEAADV---HGYRAVHVAAQYGQTSFLNHI-VAKY---H---ADYDASDNEGRSPLHWAA 168
           V   D     G+   H+A   G      ++ V K         D +   N+G + LH A 
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVG------NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115

Query: 169 YKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAG 228
            K + +  + L+   AS   +DK    PLH AA  G+++   +L   G K  +  +DK G
Sbjct: 116 GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG-KSAVNWQDKQG 174

Query: 229 LTPTQLAYDKGHRQVALYL 247
            TP   A  +GH   A+ L
Sbjct: 175 WTPLFHALAEGHGDAAVLL 193

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  168 bits (427), Expect = 1e-47
 Identities = 58/244 (23%), Positives = 90/244 (36%), Gaps = 37/244 (15%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+  G+ EKL   +     +    DG     L  AA  N   I Q ++ HG DV+A D  
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY-- 149
           G   LH A   G   V ++L+++GA V A D+  +  +H AA        N + V     
Sbjct: 91  GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK------NRVEVCSLLL 144

Query: 150 -H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD-----ASQG--------------- 187
            H AD    +  G+S +  A      + +            A +                
Sbjct: 145 SHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN 204

Query: 188 -RQDKDGCTPLHWAALRG---NVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
            +Q +   T LH A         +   +L+  G       K+K  +TP  +A ++ H  V
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLHVAAERAHNDV 262

Query: 244 ALYL 247
              L
Sbjct: 263 MEVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  155 bits (395), Expect = 5e-43
 Identities = 48/205 (23%), Positives = 70/205 (34%), Gaps = 23/205 (11%)

Query: 50  GASVSRPDGNGYFALQWAA-LNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
            A            L  AA   N   +   +     + +A+D    T LH AA    + +
Sbjct: 14  SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRI 73

Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPL 164
             +L+Q+GA V A D  G   +H A  YG        V +    H A  +A D    +PL
Sbjct: 74  VQLLLQHGADVHAKDKGGLVPLHNACSYGHYE-----VTELLLKHGACVNAMDLWQFTPL 128

Query: 165 HWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAK 224
           H AA K   +   LLL   A     +  G + +  A      E  T              
Sbjct: 129 HEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK---------- 178

Query: 225 DKAGLTPTQLAYDKGHRQVALYLSN 249
              G +  Q A +    +V   L+ 
Sbjct: 179 ---GHSLLQAAREADLAKVKKTLAL 200

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  146 bits (371), Expect = 1e-39
 Identities = 47/182 (25%), Positives = 67/182 (36%), Gaps = 12/182 (6%)

Query: 71  NFADIAQYIIDHGGDVNATDNNGQTALHWAAVRG-SIAVADVLVQNGARVEAADVHGYRA 129
            F   A  + D       T    +  L  AA  G    +  +L        A+D      
Sbjct: 2   EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61

Query: 130 VHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
           +H+AA Y +       + +    H AD  A D  G  PLH A   G  +   LLL   A 
Sbjct: 62  LHLAAGYNRVR-----IVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116

Query: 186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL 245
               D    TPLH AA +  VE C++L+  G   + T  +  G +   +A     R+   
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA--DPTLVNCHGKSAVDMAPTPELRERLT 174

Query: 246 YL 247
           Y 
Sbjct: 175 YE 176

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  146 bits (370), Expect = 2e-39
 Identities = 52/242 (21%), Positives = 89/242 (36%), Gaps = 34/242 (14%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A +YG +E     ++  GA V+  D   +  L  AA  N  ++   ++ HG D    + +
Sbjct: 98  ACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH 156

Query: 93  GQT---------------------ALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVH 131
           G++                     +L  AA    +A     +               A+H
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH 216

Query: 132 VAAQYGQTSFLNHIVAKY----HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQG 187
            A            VA+      A+ +  + +  +PLH AA +   D + +L    A   
Sbjct: 217 CAVASLHPKRKQ--VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN 274

Query: 188 RQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
             D  G T LH AAL G+++ C +L+  G+  + +     G T  Q+     +  V   L
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGS--DPSIISLQGFTAAQMG----NEAVQQIL 328

Query: 248 SN 249
           S 
Sbjct: 329 SE 330

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  135 bits (342), Expect = 2e-35
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 20/180 (11%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALN---NFADIAQYIIDHGGDVNAT 89
           A+   D  K++K +  +  +  +P  +   AL  A  +       +A+ ++  G +VN  
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQ-SHETALHCAVASLHPKRKQVAELLLRKGANVNEK 243

Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
           + +  T LH AA R    V +VL ++GA++ A D  G  A+H AA  G          + 
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQ-----TCRL 298

Query: 150 ----HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGN 205
                +D      +G +           + ++ +L         D D    L  A+  G+
Sbjct: 299 LLSYGSDPSIISLQGFTAAQMG-----NEAVQQILSESTPMRTSDVDY--RLLEASKAGD 351

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  162 bits (412), Expect = 4e-47
 Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 16/201 (7%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG 116
                  L+ A   +   + + + D    V+  D  G T L+ A     I +A  L+  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 117 ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
           A +   +         A   G+T  L +++     D +  +  G + L  AA KG  D +
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 177 RLLLFRDASQGR-----QDKDGCTPLHWAAL-----RGNVEACTVLVHAGTKQELTAKDK 226
           +LLL      GR     Q+  G T L  A       +   +   +L+  G  Q    KD 
Sbjct: 123 KLLL----EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDN 176

Query: 227 AGLTPTQLAYDKGHRQVALYL 247
           +G T    A  KG+ +++  L
Sbjct: 177 SGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  151 bits (383), Expect = 6e-43
 Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 18/193 (9%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+   D +K+++ +++    V   D  G   L  A  NN  +IA+ +ID G D+N  ++ 
Sbjct: 12  AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI 71

Query: 93  GQTALHWAAVRGSIAVADVLVQNGAR-VEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY- 149
             +   +A  +G   +   ++++    +   + +G  A+  AA+ G      HI   K  
Sbjct: 72  SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG------HIDNVKLL 125

Query: 150 ----HADYDASDNEGRSPLHWAA-----YKGFADTIRLLLFRDASQGRQDKDGCTPLHWA 200
                 D D  ++ G + L  A       + + D ++LL+   A Q  +D  G T + +A
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185

Query: 201 ALRGNVEACTVLV 213
             +G  E   +L 
Sbjct: 186 NQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 70.6 bits (174), Expect = 3e-14
 Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAAL-----NNFADIAQYIIDHGGDVN 87
           A+  G  + ++  +E+    +   +  GY AL  A         + DI + ++++G D +
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172

Query: 88  ATDNNGQTALHWAAVRGSIAVADVLVQ 114
             DN+G+TA+ +A  +G   ++ +L Q
Sbjct: 173 IKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 189 QDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           +  +    L  A  R   +   +L       ++   D  G TP  +A      ++A  L
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTY--QVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  164 bits (419), Expect = 6e-47
 Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 14/234 (5%)

Query: 14  AIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFA 73
                  +D         +A + GD E++ + +E  GA ++  + +G  AL  A +++  
Sbjct: 32  KKTKVKFDDGAVF----LAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNV 86

Query: 74  DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           D+ ++++++G ++N  DN G   LH AA  G + +A+ L+  GA V A +  G   + +A
Sbjct: 87  DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146

Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
            +      L + V +   D         +           D  + L     +  R  K G
Sbjct: 147 EEEAMEELLQNEVNRQGVD-------IEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199

Query: 194 CTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
            T LH AA +G  E   +L+ A    ++  KD  G TP   A   G  +    L
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARY--DVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  157 bits (399), Expect = 4e-44
 Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 11/201 (5%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA++++PD  G+  L  AA   + DIA+Y+I  G  V A ++ G T L  A       + 
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

Query: 110 DVLV-QNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
              V + G  +EAA     R +   A+          +   H +       G + LH AA
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDAR--------QWLNSGHINDVRHAKSGGTALHVAA 207

Query: 169 YKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAG 228
            KG+ + ++LL+        +D DG TPLH AA  G  EAC +LV      ++ A +K G
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC--DMEAVNKVG 265

Query: 229 LTPTQLAYDKGHRQVALYLSN 249
            T   +A +     +      
Sbjct: 266 QTAFDVADEDILGYLEELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  145 bits (369), Expect = 8e-40
 Identities = 45/214 (21%), Positives = 69/214 (32%), Gaps = 35/214 (16%)

Query: 63  ALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAA 122
             Q           +  +          ++G      A   G       L++ GA +  A
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYA 69

Query: 123 DVHGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIRL 178
           +V G  A+H A         N  + K+   + A+ +  DNEG  PLH AA  G+ D    
Sbjct: 70  NVDGLTALHQACIDD-----NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY 124

Query: 179 LLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV-----------HAGTKQ-------- 219
           L+ + A  G  + +G TPL  A      E     V               +         
Sbjct: 125 LISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW 184

Query: 220 ------ELTAKDKAGLTPTQLAYDKGHRQVALYL 247
                       K+G T   +A  KG+ +V   L
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (313), Expect = 5e-32
 Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 12/170 (7%)

Query: 86  VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI 145
           +   D   +         GS    +  V    + +     G      A   G     +  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSG-----DTE 54

Query: 146 VAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAA 201
                    AD + ++ +G + LH A      D ++ L+   A+  + D +G  PLH AA
Sbjct: 55  EVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114

Query: 202 LRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
             G ++    L+  G    + A +  G TP  +A ++   ++     N Q
Sbjct: 115 SCGYLDIAEYLISQGA--HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  120 bits (304), Expect = 7e-31
 Identities = 35/181 (19%), Positives = 53/181 (29%), Gaps = 17/181 (9%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA V   +  G   L  A      ++ Q  ++  G       + + A             
Sbjct: 129 GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG------VDIEAARKEEERIMLRDAR 182

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY----HADYDASDNEGRSPLH 165
             L             G  A+HVAA  G        V K       D +  D +G +PLH
Sbjct: 183 QWLNSGHINDVRHAKSGGTALHVAAAKG-----YTEVLKLLIQARYDVNIKDYDGWTPLH 237

Query: 166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKD 225
            AA+ G  +  R+L+         +K G T    A          +            K 
Sbjct: 238 AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHS--EKR 295

Query: 226 K 226
           +
Sbjct: 296 E 296

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  115 bits (291), Expect = 6e-29
 Identities = 32/164 (19%), Positives = 54/164 (32%), Gaps = 16/164 (9%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A      E L+  V   G      D     A +        D  Q++     +      +
Sbjct: 146 AEEEAMEELLQNEVNRQGV-----DIEA--ARKEEERIMLRDARQWLNSGHINDVRHAKS 198

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY--- 149
           G TALH AA +G   V  +L+Q    V   D  G+  +H AA +G+         +    
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE-----ACRILVE 253

Query: 150 -HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
              D +A +  G++    A          L   ++     + + 
Sbjct: 254 NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  161 bits (410), Expect = 1e-46
 Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 5/215 (2%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
            +  G  ++L++ +  D +  +R D +   AL WA      +I ++++  G  VN  D+ 
Sbjct: 13  LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
           G + LH AA  G   +   L+  GA V A + +G   +H AA   +      ++    A+
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGAN 131

Query: 153 YDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
            DA D+   + +H AA KG    + +LLF  AS   QD +G TPLH A     VE    L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 213 VHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           V  G    +  ++K   TP Q+A  KG   + L  
Sbjct: 192 VTQGA--SIYIENKEEKTPLQVA--KGGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  161 bits (409), Expect = 1e-46
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 3/189 (1%)

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
           +       A      ++ + I+        TD + +TALHWA   G   + + L+Q G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRL 178
           V   D  G+  +H+AA  G    +  ++ K  A  +A +  G +PLH+AA K   +   +
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVM 124

Query: 179 LLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK 238
           LL   A+   +D    T +H AA +GN++   +L+          +D  G TP  LA D+
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA--STNIQDTEGNTPLHLACDE 182

Query: 239 GHRQVALYL 247
              + A +L
Sbjct: 183 ERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  118 bits (296), Expect = 1e-30
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 11/161 (6%)

Query: 91  NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY- 149
            +     + A       + + ++ + +     D     A+H A   G     +  + ++ 
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG-----HTEIVEFL 59

Query: 150 --H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV 206
                  +  D+ G SPLH AA  G  + ++ LL + A     +++GCTPLH+AA +   
Sbjct: 60  LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119

Query: 207 EACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           E   +L+  G      AKD    T    A  KG+ ++   L
Sbjct: 120 EIAVMLLEGGA--NPDAKDHYDATAMHRAAAKGNLKMVHIL 158

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  161 bits (411), Expect = 5e-46
 Identities = 54/213 (25%), Positives = 78/213 (36%), Gaps = 17/213 (7%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA       NG      AA+     + +  +  G DVN  D  G TA   AAV G +   
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 110 DVLVQNGARVEAAD----------VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE 159
             L + GA V                G  A+  AA+ G    L  ++ +  AD +A DN 
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 160 GRSPLHWAAYKG----FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV-H 214
           GR+ L  A              LLL   A    + + G TPL  A  + ++     L+  
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 215 AGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
              +      D  G T   LA +   +++A  L
Sbjct: 242 EHIEIN--DTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  160 bits (408), Expect = 1e-45
 Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 18/230 (7%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYF-ALQWAALNNFADIAQYIIDHGGDVNATDN 91
           A    D + +++ +E  GA+V+  +  G +  L  A   +  DI + ++ HG D      
Sbjct: 12  AVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 70

Query: 92  NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS----FLNH--- 144
           NG T    AA+ GS+ +  + +  GA V   D +G+ A   AA YG+             
Sbjct: 71  NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130

Query: 145 --IVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD-ASQGRQDKDGCTPLHWAA 201
             +  K   D +     G + L  AA KG  + +++LL    A     D  G   L  A 
Sbjct: 131 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL 190

Query: 202 LRGNVEACT----VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           L  +         +L+  G   ++  + + G TP  LA +K H  +   L
Sbjct: 191 LSSDDSDVEAITHLLLDHGA--DVNVRGERGKTPLILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  150 bits (382), Expect = 7e-42
 Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 25/204 (12%)

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNATDNN-GQTALHWAAVRGSIAVADVLVQNGA 117
                L  A  N   D+ Q +++ G +VN  +   G T LH A       + ++L+++GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 118 RVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY---H-ADYDASDNEGRSPLHWAAYKGF 172
                  +G     +AA  G       + + K      AD +  D  G +    AA  G 
Sbjct: 64  DPVLRKKNGATPFLLAAIAG------SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117

Query: 173 ADTIRLLLFRDA----------SQGRQDKDGCTPLHWAALRGNVEACTVLV-HAGTKQEL 221
              ++ L  R A           Q R  K G T L  AA +G+VE   +L+   G     
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN- 176

Query: 222 TAKDKAGLTPTQLAYDKGHRQVAL 245
            A D  G      A          
Sbjct: 177 -ACDNMGRNALIHALLSSDDSDVE 199

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  146 bits (372), Expect = 2e-40
 Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 16/199 (8%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+  G  + L+ F+ + GA V+  D  G+ A   AA+       +++   G +VN     
Sbjct: 79  AAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137

Query: 93  ----------GQTALHWAAVRGSIAVADVLV-QNGARVEAADVHGYRAVHVAAQYGQTSF 141
                     G TAL  AA +G + V  +L+ + GA V A D  G  A+  A      S 
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 197

Query: 142 LNHIVA---KYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD-ASQGRQDKDGCTPL 197
           +  I      + AD +     G++PL  A  K     ++ LL ++       D DG T L
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257

Query: 198 HWAALRGNVEACTVLVHAG 216
             A      +   +L   G
Sbjct: 258 LLAVELKLKKIAELLCKRG 276

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  123 bits (312), Expect = 5e-32
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 5/142 (3%)

Query: 48  EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAAVRGSI 106
           +      R    G  AL  AA     ++ + ++D  G DVNA DN G+ AL  A +    
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195

Query: 107 ----AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRS 162
               A+  +L+ +GA V      G   + +A +      +  ++ + H + + +D++G++
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 163 PLHWAAYKGFADTIRLLLFRDA 184
            L  A          LL  R A
Sbjct: 256 ALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  122 bits (308), Expect = 2e-31
 Identities = 42/171 (24%), Positives = 62/171 (36%), Gaps = 18/171 (10%)

Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAK 148
                  L  A     + +   L++ GA V   +   G+  +H A Q  +       + +
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED-----IVE 56

Query: 149 Y---H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRG 204
               H AD       G +P   AA  G    ++L L + A     D  G T    AA+ G
Sbjct: 57  LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

Query: 205 NVEACTVLVHAG--------TKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
            V+A   L   G        TK++     K G T    A +KGH +V   L
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 89.8 bits (224), Expect = 3e-20
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 33  ASAYGDFEKLRKFVE---EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGG-DVNA 88
           A    D   +        + GA V+     G   L  A       + Q +++    ++N 
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

Query: 89  TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV 124
           TD++G+TAL  A       +A++L + GA  +  D+
Sbjct: 249 TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 89.5 bits (223), Expect = 4e-20
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 122 ADVHGYRAVHVAAQYGQTSFLNHIVAKY----HADYDASDNE-GRSPLHWAAYKGFADTI 176
           A V     +  A Q          + +      A+ +  + E G +PLH A      D +
Sbjct: 1   AAVEDNHLLIKAVQNEDVD-----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
            LLL   A    + K+G TP   AA+ G+V+   + +  G   ++   D  G T    A 
Sbjct: 56  ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAA 113

Query: 237 DKGHRQVALYL 247
             G  +   +L
Sbjct: 114 VYGKVKALKFL 124

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  160 bits (406), Expect = 6e-46
 Identities = 43/201 (21%), Positives = 83/201 (41%), Gaps = 12/201 (5%)

Query: 57  DGNGYFALQWAALNN----FADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVL 112
             +G   L  A ++       ++ + +      +N  +N  QT LH A +     +A+ L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 113 VQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK-----YHADYDASDNEGRSPLHWA 167
           +  G   E  D  G   +H+A + G  + +  +         H+   A++  G + LH A
Sbjct: 65  LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124

Query: 168 AYKGFADTIRLLLFRDASQGRQDK-DGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDK 226
           +  G+   + LL+   A    Q+  +G T LH A    N +  ++L+  G   ++     
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA--DVNRVTY 182

Query: 227 AGLTPTQLAYDKGHRQVALYL 247
            G +P QL + +   ++   L
Sbjct: 183 QGYSPYQLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  159 bits (405), Expect = 1e-45
 Identities = 44/226 (19%), Positives = 79/226 (34%), Gaps = 21/226 (9%)

Query: 33  ASAYGDFEKLRKFVE---EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
           A  + +     + +     D A ++  +      L  A + N  +IA+ ++  G D    
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74

Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGA------RVEAADVHGYRAVHVAAQYGQTSFLN 143
           D  G T LH A  +G +A   VL Q+         ++A + +G+  +H+A+ +G      
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG--- 131

Query: 144 HIVAKY---H-ADYDASDN-EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLH 198
             + +      AD +A +   GR+ LH A      D + LLL   A   R    G +P  
Sbjct: 132 --IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 189

Query: 199 WAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
               R +      L     +                  +    +  
Sbjct: 190 LTWGRPSTRIQQQLGQLTLENL--QMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  123 bits (310), Expect = 3e-32
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 22/175 (12%)

Query: 88  ATDNNGQTALHWAAVRGSIA----VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLN 143
               +G + LH A +    A    V   +  + A +   +      +H+A    Q     
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPE--- 59

Query: 144 HIVAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGR------QDKDG 193
             +A+       D +  D  G +PLH A  +G   ++ +L     +          + +G
Sbjct: 60  --IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117

Query: 194 CTPLHWAALRGNVEACTVLVHAGTKQELTAKDKA-GLTPTQLAYDKGHRQVALYL 247
            T LH A++ G +    +LV  G   ++ A++   G T   LA D  +  +   L
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGA--DVNAQEPCNGRTALHLAVDLQNPDLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  101 bits (253), Expect = 2e-24
 Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 120 EAADVHGYRAVHVAAQYGQTSFLNHIV---AKYHADYDASDNEGRSPLHWAAYKGFADTI 176
           +     G   +H+A  + + +    ++       A  +  +N  ++PLH A      +  
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG----TKQELTAKDKAGLTPT 232
             LL        +D  G TPLH A  +G + +  VL  +         L A +  G T  
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 233 QLAYDKGHRQVALYL 247
            LA   G+  +   L
Sbjct: 122 HLASIHGYLGIVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 59.1 bits (144), Expect = 4e-10
 Identities = 9/61 (14%), Positives = 15/61 (24%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA V+R    GY   Q         I Q +     +        +    +          
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

Query: 110 D 110
           +
Sbjct: 234 E 234

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  160 bits (408), Expect = 1e-45
 Identities = 37/225 (16%), Positives = 73/225 (32%), Gaps = 24/225 (10%)

Query: 32  SASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDN 91
           S       ++L+ F+        + D +G+ A  +A  +N   +   +++ G   N  +N
Sbjct: 5   SRINTWKSKQLKSFLS--SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLEN 62

Query: 92  NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY-- 149
             +  LH AA      +  +L+ +G      D  G  A++ A   G          K   
Sbjct: 63  --EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ-----TVKLFV 115

Query: 150 -H-ADYDASDNEG-RSPLHWAAYKGFADTIRLLLFRDASQG---RQDKDGCTPLHWAALR 203
                       G ++  + A        +   L    S+           + +H     
Sbjct: 116 KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL----SEIPSTFDLAILLSCIHITIKN 171

Query: 204 GNVEACTVLVHAGTKQELTAKDKAGLTPT-QLAYDKGHRQVALYL 247
           G+V+   +L+   T       +     P  +LA D    ++   L
Sbjct: 172 GHVDMMILLLDYMT--STNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  153 bits (388), Expect = 1e-42
 Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 21/203 (10%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA  +  +    F L  AA      I + ++  G D +  D+ G TAL++A   G++   
Sbjct: 54  GALKNLLEN--EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTV 111

Query: 110 DVLVQNGARVEAADVHGYR-AVHVAAQYGQTSFLNHIVAKY---HADYDASDNEGRSPLH 165
            + V+   R+      G++ + + A      S     +  Y               S +H
Sbjct: 112 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS-----IVSYFLSEIPSTFDLAILLSCIH 166

Query: 166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTP-LHWAALRGNVEACTVLVHAGTKQELTAK 224
                G  D + LLL    S    +     P +  A    ++E    L        + + 
Sbjct: 167 ITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI--NIYSA 224

Query: 225 DKAGLTPTQLAYDKGHRQVALYL 247
           +   +            ++A  +
Sbjct: 225 NLENVL-------LDDAEIAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  144 bits (365), Expect = 2e-39
 Identities = 24/246 (9%), Positives = 74/246 (30%), Gaps = 27/246 (10%)

Query: 17  NENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIA 76
            +N  +N+     +  A+   D + ++  +   G   S+ D  G  AL +A  +      
Sbjct: 56  LKNLLENE---FPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDSGNMQTV 111

Query: 77  QYIIDHGGDVNATDNNG-QTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQ 135
           +  +     +      G +T+ + A +   +++    +                +H+  +
Sbjct: 112 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-LAILLSCIHITIK 170

Query: 136 YGQTSFLNHIVAKY----HADYDASDNEGRSP-LHWAAYKGFADTIRLLLFRDASQGRQD 190
            G        +           + +++    P +  A      + ++ L   D       
Sbjct: 171 NGHVD-----MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI------ 219

Query: 191 KDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNA 250
            +  +      L  + E   +++    + +  +          +  +    ++       
Sbjct: 220 -NIYSANLENVLLDDAEIAKMIIEKHVEYK--SDSYTKDLD--IVKNNKLDEIISKNKEL 274

Query: 251 QHMHRN 256
           + M+ N
Sbjct: 275 RLMYVN 280

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  141 bits (357), Expect = 2e-38
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 17/191 (8%)

Query: 62  FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA 121
             L          +  ++     D    D +G +A ++A    ++ +   L+  GA    
Sbjct: 2   MDLSRINTWKSKQLKSFL--SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59

Query: 122 ADVHGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIR 177
            +      +H AA    T      + K       D    D++G + L++A   G   T++
Sbjct: 60  LE--NEFPLHQAATLEDTK-----IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112

Query: 178 LLLFRDASQGRQDKDG-CTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
           L + ++       K G  T  + A +  +V   +  +               L+   +  
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIHITI 169

Query: 237 DKGHRQVALYL 247
             GH  + + L
Sbjct: 170 KNGHVDMMILL 180

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  156 bits (397), Expect = 2e-45
 Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 12/170 (7%)

Query: 50  GASVSRPDG-NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           G+      G +    L  AA     D  + ++ +G DVNA D +G T LH AA  G + +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY---H-ADYDASDNEGRSP 163
            +VL++NGA V A D  G   + +AA +G      H+ + +    + AD +A+D EG +P
Sbjct: 63  VEVLLKNGADVNAVDHAGMTPLRLAALFG------HLEIVEVLLKNGADVNANDMEGHTP 116

Query: 164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV 213
           LH AA  G  + + +LL   A    QDK G T    +   GN +   +L 
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  132 bits (335), Expect = 1e-36
 Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 15/169 (8%)

Query: 17  NENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIA 76
           + + +D    +     A+  G  +++R  +   GA V+  D +G+  L  AA N   +I 
Sbjct: 8   HHHGSDLGKKL---LEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIV 63

Query: 77  QYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY 136
           + ++ +G DVNA D+ G T L  AA+ G + + +VL++NGA V A D+ G+  +H+AA +
Sbjct: 64  EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123

Query: 137 GQTSFLNHI-VAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIRLLL 180
           G      H+ + +    + AD +A D  G++    +   G  D   +L 
Sbjct: 124 G------HLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 77.4 bits (192), Expect = 6e-17
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA V+  D  G+  L  AA+    +I + ++ +G DVNA D  G+TA   +   G+  +A
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162

Query: 110 DVLVQ 114
           ++L +
Sbjct: 163 EILQK 167

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  158 bits (402), Expect = 8e-45
 Identities = 50/231 (21%), Positives = 80/231 (34%), Gaps = 18/231 (7%)

Query: 33  ASAYGDFEKLRKFVEE--DGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD 90
           A  +     L   +        +   +  G  AL  AA+   A   + +   G  V   +
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 91  NNGQTALHWAAVRGSIAVADVLVQNGARV--EAADVHGYRAVHVAAQYGQTSFLNHIVAK 148
             G TALH A    +   A VL+Q       +A+D +  ++                   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 149 YH-----------ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD-GCTP 196
                           +A + +G +PLH A     A+ +RLL    A   + +   G TP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 197 LHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           LH A          +L+ AG   + TA+   G TP   A  + +  +A  L
Sbjct: 196 LHLAVEAQAASVLELLLKAGA--DPTARMYGGRTPLGSALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  138 bits (351), Expect = 2e-37
 Identities = 37/189 (19%), Positives = 54/189 (28%), Gaps = 35/189 (18%)

Query: 56  PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN 115
           PD +   A   +  N   +      D    + A + +G T LH A +     +  +L   
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 116 GARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADT 175
           GA +   +                                    GR+PLH A     A  
Sbjct: 181 GADLNKPE---------------------------------PTCGRTPLHLAVEAQAASV 207

Query: 176 IRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA 235
           + LLL   A    +   G TPL  A LR N     +L   G            L+P   +
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA--PEPEDGGDKLSPCSSS 265

Query: 236 YDKGHRQVA 244
                    
Sbjct: 266 GSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  136 bits (345), Expect = 1e-36
 Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 29/213 (13%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGD---VNATDNNGQTALHWAAVRGSIAVADVLV 113
             +G  AL  A ++       +++        ++  ++ GQTALH AA+ G  +  + L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 114 QNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY----HADYDASDNEGRSP------ 163
             GA V  A+  G+ A+H+A +        H  A         +    ++          
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVR-----AHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 164 --------LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA 215
                      +      +              ++ DG TPLH A +  + E   +L  A
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 216 GTKQELTAKDK-AGLTPTQLAYDKGHRQVALYL 247
           G   +L   +   G TP  LA +     V   L
Sbjct: 181 GA--DLNKPEPTCGRTPLHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  128 bits (323), Expect = 1e-33
 Identities = 31/194 (15%), Positives = 61/194 (31%), Gaps = 35/194 (18%)

Query: 15  IPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFAD 74
           +          +       S      +     E+    +   + +G+  L  A ++  A+
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172

Query: 75  IAQYIIDHGGDVNATDNN-GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           + + + D G D+N  +   G+T LH A    + +V ++L++ GA   A            
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR----------- 221

Query: 134 AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
                                     GR+PL  A  +      RLL    A +     D 
Sbjct: 222 -----------------------MYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258

Query: 194 CTPLHWAALRGNVE 207
            +P   +    + +
Sbjct: 259 LSPCSSSGSDSDSD 272

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  118 bits (297), Expect = 5e-30
 Identities = 34/183 (18%), Positives = 55/183 (30%), Gaps = 28/183 (15%)

Query: 86  VNATDNNGQTALHWAAVRGSIAVADVLVQNGA---RVEAADVHGYRAVHVAAQYGQTSFL 142
                 +G TALH A +       D L+   A    ++  +  G  A+H+AA  G+ S  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS-- 59

Query: 143 NHIVAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTP-- 196
                +      A    ++  G + LH A          +LL    S  R   D      
Sbjct: 60  ---TVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116

Query: 197 ------------LHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
                          +      E            +L A++  G TP  +A      ++ 
Sbjct: 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL--QLEAENYDGHTPLHVAVIHKDAEMV 174

Query: 245 LYL 247
             L
Sbjct: 175 RLL 177

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.3 bits (181), Expect = 1e-14
 Identities = 10/67 (14%), Positives = 18/67 (26%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA  +     G   L  A L     +A+ +  HG        +  +    +         
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

Query: 110 DVLVQNG 116
           D   +  
Sbjct: 275 DEGDEYD 281

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  154 bits (391), Expect = 2e-44
 Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 20/192 (10%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAAVRGSIAVADVLVQN 115
                  +        A   +  +D+   D+N  D++G + LHWA   G  AV ++L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 116 GARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY---H-ADYDASDNEGRSPLHWAAYK 170
           GAR+   +      +H+AA +G      H  + +    + AD +A +  G  PLH+A + 
Sbjct: 62  GARINVMNRGDDTPLHLAASHG------HRDIVQKLLQYKADINAVNEHGNVPLHYACFW 115

Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
           G       L+   A     +K G  P+  A               G              
Sbjct: 116 GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG------QNLNR--I 167

Query: 231 PTQLAYDKGHRQ 242
           P +  + KG  +
Sbjct: 168 PYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  139 bits (354), Expect = 3e-39
 Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 15/182 (8%)

Query: 28  TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN 87
            D+F+    G+   +R +++     +++ D +G+  L WA     + + + +I  G  +N
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66

Query: 88  ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
             +    T LH AA  G   +   L+Q  A + A + HG   +H A  +GQ       VA
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ-----VA 121

Query: 148 KY---H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALR 203
           +    + A     +  G  P+  A                 +  R       P      +
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFWK 175

Query: 204 GN 205
           G 
Sbjct: 176 GT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 94.4 bits (236), Expect = 9e-23
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 122 ADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF 181
                   +    + G    +   +     D +  D+ G SPLHWA  +G +  + +L+ 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 182 RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHR 241
           R A     ++   TPLH AA  G+ +    L+      ++ A ++ G  P   A   G  
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA--DINAVNEHGNVPLHYACFWGQD 118

Query: 242 QVALYL 247
           QVA  L
Sbjct: 119 QVAEDL 124

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  154 bits (392), Expect = 4e-44
 Identities = 34/213 (15%), Positives = 65/213 (30%), Gaps = 8/213 (3%)

Query: 28  TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN 87
             VF A    +     +   E    +                     +          V 
Sbjct: 14  VKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTGLI-----PSNYVA 67

Query: 88  ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
               +    LH AA RG+++     + N   V   D  G  A++ A   G    +  +  
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT 127

Query: 148 KYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE 207
           + + + +  +  G + LH AA+KG+AD ++LLL + A    ++ +       A       
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACAS 187

Query: 208 ACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGH 240
                         T  +       + +  + H
Sbjct: 188 LLKKKQGTDA--VRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  149 bits (379), Expect = 3e-42
 Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 17/197 (8%)

Query: 56  PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN 115
           P   G   +  A           +    GD+    +   T       +G        +  
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG-----RTGLIP 62

Query: 116 GARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH----ADYDASDNEGRSPLHWAAYKG 171
              V          +H AA+ G     N    +         +  D  G + L+WA + G
Sbjct: 63  SNYVAEQAESIDNPLHEAAKRG-----NLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117

Query: 172 FADTIRLLLFRD-ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT 230
             D + +L  +      +Q+K G T LH AA +G  +   +L+  G       ++     
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA--RTDLRNIEKKL 175

Query: 231 PTQLAYDKGHRQVALYL 247
              +A +     +    
Sbjct: 176 AFDMATNAACASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  125 bits (315), Expect = 4e-33
 Identities = 33/162 (20%), Positives = 48/162 (29%), Gaps = 9/162 (5%)

Query: 87  NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV 146
                 GQ  +  A         D L      +                 G+T  +    
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP--- 62

Query: 147 AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV 206
                          +PLH AA +G    +R  L         DK G T L+WA   G+ 
Sbjct: 63  ---SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119

Query: 207 EACTVLV-HAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           +   +L        EL  ++K G T    A  KG+  +   L
Sbjct: 120 DIVEMLFTQPNI--ELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 6/58 (10%), Positives = 12/58 (20%), Gaps = 9/58 (15%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNG---------QTALH 98
           GA     +     A   A     A + +           ++            +   H
Sbjct: 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  150 bits (382), Expect = 5e-43
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 9/155 (5%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG 116
           D      L  A +    +    ++++   +   D  G TAL WA     + +A+ L+  G
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91

Query: 117 ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKGF 172
           + V   D  G   +  +  +G        ++ +   H A+ +  + EG +PL  A+  G 
Sbjct: 92  SNVNTKDFSGKTPLMWSIIFG-----YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146

Query: 173 ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE 207
           ++ ++ LL   A    +D  G T    A + G  E
Sbjct: 147 SEIVKKLLELGADISARDLTGLTAEASARIFGRQE 181

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  148 bits (376), Expect = 4e-42
 Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 22/203 (10%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           G+ +   D NG    +     +      ++       N  D+  +T L  A + G     
Sbjct: 1   GSHM---DKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAI 51

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY---H-ADYDASDNEGRSPL 164
           D LV+N  ++E  D+ G  A+  A +       N + +A+      ++ +  D  G++PL
Sbjct: 52  DKLVENFDKLEDKDIEGSTALIWAVKN------NRLGIAEKLLSKGSNVNTKDFSGKTPL 105

Query: 165 HWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAK 224
            W+   G+++    LL   A+   ++ +G TPL  A+  G  E    L+  G      A+
Sbjct: 106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--AR 163

Query: 225 DKAGLTPTQLAYDKGHRQVALYL 247
           D  GLT    A   G ++V    
Sbjct: 164 DLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  129 bits (328), Expect = 3e-35
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
              +   D  G  AL WA  NN   IA+ ++  G +VN  D +G+T L W+ + G   ++
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY---H-ADYDASDNEGRSPL 164
             L+++GA V   ++ G   + VA++Y          + K      AD  A D  G +  
Sbjct: 118 YFLLEHGANVNDRNLEGETPLIVASKY------GRSEIVKKLLELGADISARDLTGLTAE 171

Query: 165 HWAAYKGFADTIRLLL 180
             A   G  + I++  
Sbjct: 172 ASARIFGRQEVIKIFT 187

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  154 bits (391), Expect = 2e-42
 Identities = 42/203 (20%), Positives = 72/203 (35%), Gaps = 20/203 (9%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           G S +  +  G  AL  A      D A+Y+   G   +    +GQ  +H A +     + 
Sbjct: 43  GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLV 100

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY 169
             LV+           G     +  +          V +  +       +G++ LHW   
Sbjct: 101 VALVEGAKER------GQMPESLLNECD-----EREVNEIGS--HVKHCKGQTALHWCVG 147

Query: 170 KG--FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ---ELTAK 224
            G  + + I++L+   AS   +DK   TPL  A    N EA  +++     +    L   
Sbjct: 148 LGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA 207

Query: 225 DKAGLTPTQLAYDKGHRQVALYL 247
           +K G +    A       VA+  
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  154 bits (391), Expect = 3e-42
 Identities = 35/222 (15%), Positives = 60/222 (27%), Gaps = 31/222 (13%)

Query: 50  GASVSRPDGNGYFALQWAAL--NNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA 107
                     G  AL W       + ++ + ++  G    A D   +T L  A    +  
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE 187

Query: 108 VADVLV-----QNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY----HADYDASDN 158
             D+++     ++  R++ A+  G   +H A            VA        D +  DN
Sbjct: 188 ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED-----VAMRFVEMGIDVNMEDN 242

Query: 159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQ-------------DKDGCTPLHWAALRGN 205
           E   PL+ +         + LL +      Q                    +  AA    
Sbjct: 243 EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302

Query: 206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
            E   +L       E+      G         K    V    
Sbjct: 303 QEVLQLLQEKLD--EVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  146 bits (372), Expect = 1e-39
 Identities = 42/193 (21%), Positives = 65/193 (33%), Gaps = 19/193 (9%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG 116
           D      +  AA     D  + +I+ G      +  G TALH A   G +  A  L   G
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76

Query: 117 ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
                    G + +H+A    +T      +       + +   G+ P          +  
Sbjct: 77  EVHSLWH--GQKPIHLAVMANKTD-----LVVALV--EGAKERGQMPESLLNECDEREVN 127

Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGN--VEACTVLVHAGTKQELTAKDKAGLTPTQL 234
            +          +   G T LHW    G   +E   +LV  G     TAKDKA  TP   
Sbjct: 128 EIGS--HV----KHCKGQTALHWCVGLGPEYLEMIKILVQLGA--SPTAKDKADETPLMR 179

Query: 235 AYDKGHRQVALYL 247
           A +  +R+    +
Sbjct: 180 AMEFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  142 bits (361), Expect = 4e-38
 Identities = 23/194 (11%), Positives = 51/194 (26%), Gaps = 23/194 (11%)

Query: 42  LRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA 101
           +     +    +   +  G   L WA L N+ D+A   ++ G DVN  DN     L+ + 
Sbjct: 193 MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV 252

Query: 102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGR 161
               + +   L+Q                                               
Sbjct: 253 RAAMVLLTKELLQKTDVFLIQACPY---------------------HNGTTVLPDRVVWL 291

Query: 162 SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQEL 221
             +  AA     + ++LL  +     R    G         +       + +       +
Sbjct: 292 DFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP--V 349

Query: 222 TAKDKAGLTPTQLA 235
             + ++    + ++
Sbjct: 350 RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.5 bits (210), Expect = 7e-18
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 144 HIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALR 203
            +      +   SD+E    +H AA KG  D +R L+    S   Q++ GCT LH A   
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 204 GNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           G V+    L   G           G  P  LA       + + L
Sbjct: 64  GCVDTAKYLASVGEV----HSLWHGQKPIHLAVMANKTDLVVAL 103

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  150 bits (380), Expect = 3e-42
 Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 26/233 (11%)

Query: 56  PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN 115
           P+  G  +L      N        I HG  V   +      L  +++ G   +   ++  
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 116 GARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKG 171
                  +  G  A+H A   G     +  + K+      + +A+D++G +PLH AA   
Sbjct: 60  VDDPSLPNDEGITALHNAVCAG-----HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN 114

Query: 172 FADTIRLLLFRDA---SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAG 228
                + L+   A   +    D             G  +    L     K      +K  
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG--IMNKGV 172

Query: 229 LTPTQLAYDKGHRQVALYL-SNAQHMHRNH------WGDKICGRKTSDIGYAP 274
           +        +   ++ +        +HR        W  ++  ++    GY P
Sbjct: 173 IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKE----GYVP 221

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  150 bits (380), Expect = 4e-42
 Identities = 41/199 (20%), Positives = 67/199 (33%), Gaps = 18/199 (9%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           G  V   +      L  ++L    D+ Q II    D +  ++ G TALH A   G   + 
Sbjct: 28  GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIV 86

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY----HAD---YDASDNEGR 161
             LVQ G  V AAD  G+  +H AA         ++ V K+     A       SD +  
Sbjct: 87  KFLVQFGVNVNAADSDGWTPLHCAASCN------NVQVCKFLVESGAAVFAMTYSDMQTA 140

Query: 162 SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQEL 221
           +       +G+    + L       G  +K     L     + + E   + +  G    +
Sbjct: 141 ADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTI 197

Query: 222 TAKDKAGLTPTQLAYDKGH 240
             ++         A     
Sbjct: 198 IHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 94.6 bits (236), Expect = 3e-22
 Identities = 22/156 (14%), Positives = 42/156 (26%), Gaps = 24/156 (15%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQ---TALHWAAVRGSI 106
           G +V+  D +G+  L  AA  N   + +++++ G  V A   +              G  
Sbjct: 93  GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 152

Query: 107 AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHW 166
             +  L     ++   +     A+                          ++E      W
Sbjct: 153 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTII--HREDEDEIEWWW 210

Query: 167 AAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL 202
           A                      DK+G  P +   L
Sbjct: 211 ARLN-------------------DKEGYVPRNLLGL 227

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  145 bits (369), Expect = 1e-41
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 11/152 (7%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+A GD +++R+ +  +       +  G  ALQ     +   IA  ++  G   N  D +
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS-TAIALELLKQGASPNVQDTS 67

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY-- 149
           G + +H AA  G +    VLV++GA V   D  G   +H+A Q G      H  V  +  
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG------HTAVVSFLA 121

Query: 150 -HADYDASDNEGRSPLHWAAYKGFADTIRLLL 180
             +D    D  G +PL  A  +G  D + +L 
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  131 bits (333), Expect = 2e-36
 Identities = 47/193 (24%), Positives = 70/193 (36%), Gaps = 43/193 (22%)

Query: 63  ALQWAALNNFADIAQY-IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA 121
            L  AA        +  +       +A +  G+TAL      GS A+A  L++ GA    
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV 63

Query: 122 ADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF 181
            D                                    G SP+H AA  GF DT+++L+ 
Sbjct: 64  QD----------------------------------TSGTSPVHDAARTGFLDTLKVLVE 89

Query: 182 RDASQGRQDKDGCTPLHWAALRGNVEACTVLV-HAGTKQELTAKDKAGLTPTQLAYDKGH 240
             A     D  G  P+H A   G+    + L   +    +L  +D  GLTP +LA  +G 
Sbjct: 90  HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES----DLHRRDARGLTPLELALQRGA 145

Query: 241 RQVALYLSNAQHM 253
           + +   L    HM
Sbjct: 146 QDLVDILQG--HM 156

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  144 bits (366), Expect = 4e-41
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 10/153 (6%)

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
           +    L  AA     D  + ++ +G      D  G + LH AA  G  +  +VL++ G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKGFAD 174
            +A        +H+AA  G     +  + +    H AD +A D    + LHWA      +
Sbjct: 60  RDARTKVDRTPLHMAASEG-----HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 175 TIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE 207
            + LL+   A    Q K   T    +   GN +
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNED 147

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  124 bits (314), Expect = 1e-33
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 13/152 (8%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+  G  +++R  +   GA  +  D  G   L  AA        + ++  G   +A    
Sbjct: 9   AARAGQDDEVRILMAN-GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY-- 149
            +T LH AA  G   + +VL+++GA V A D+    A+H A ++      NH  V +   
Sbjct: 67  DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH------NHQEVVELLI 120

Query: 150 -H-ADYDASDNEGRSPLHWAAYKGFADTIRLL 179
            + AD        ++    +   G  D   +L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  147 bits (372), Expect = 4e-41
 Identities = 41/204 (20%), Positives = 67/204 (32%), Gaps = 18/204 (8%)

Query: 50  GASVSRPDGNGY---FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSI 106
             S  +           L  AAL    ++ Q  +    D +  +  G TALH A    + 
Sbjct: 8   AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANY 67

Query: 107 AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH----ADYDASD-NEGR 161
           ++ D L+  GA V + D HG+  +H AA    T      +        A   A+  ++G 
Sbjct: 68  SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTV-----ICMALVQHGAAIFATTLSDGA 122

Query: 162 SPLHWAA--YKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           +         +G+AD    L   + S G  +      L   +     E   +    G   
Sbjct: 123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE---LSFREGESV 179

Query: 220 ELTAKDKAGLTPTQLAYDKGHRQV 243
            +  +D    T    A   G    
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGY 203

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  124 bits (313), Expect = 8e-33
 Identities = 30/184 (16%), Positives = 52/184 (28%), Gaps = 18/184 (9%)

Query: 77  QYIIDHGGDVNATDN---NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA 133
           + ++   G          N    L  AA+ G + V    V+        +  G  A+H A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 134 AQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQ 189
                    N+ +  +     A+ ++ D+ G +PLH AA          L+   A+    
Sbjct: 62  ICGA-----NYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116

Query: 190 D-KDGCTPLHWAAL--RGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALY 246
              DG T          G  +  T L            +   +      Y         +
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQSMG--LMNSGAVYAL-WDYSAEFGDELSF 173

Query: 247 LSNA 250
               
Sbjct: 174 REGE 177

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 176 IRLLLFRDASQGRQDKDGCTP---LHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPT 232
           +R +L +  S  +  +    P   L  AAL G +E     V      + +  ++ G+T  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN--DPSQPNEEGITAL 58

Query: 233 QLAYDKGHRQVALYL 247
             A    +  +  +L
Sbjct: 59  HNAICGANYSIVDFL 73

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  144 bits (365), Expect = 6e-41
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 11/163 (6%)

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
                L  AA     +    ++ +  +VNA +  G+TAL      G+  +A  L+  GA 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN 62

Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKGFAD 174
            +  D  G+  +H AA+ G          +      AD +  DNEG  PLH AA +G   
Sbjct: 63  PDLKDRTGFAVIHDAARAG-----FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117

Query: 175 TIRLLLFRDASQ-GRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
            +  L+   AS  G ++  G T    A L G  E  +++   G
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 79.0 bits (196), Expect = 2e-17
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHG-GDVNATDNNGQTALHWAAVRGSIAV 108
            A V+  D  G   L  AA      + ++++ H   +V   ++ G TA   A + G   V
Sbjct: 93  QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152

Query: 109 ADVLVQNGA 117
             ++  NGA
Sbjct: 153 VSLMQANGA 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  144 bits (365), Expect = 8e-41
 Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 16/173 (9%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAAVRGSIAV 108
           GA     +      L  AA     +  + +      +    +    T LH+AA    ++V
Sbjct: 1   GAMG---NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY----HADYDASDNEGRSP 163
            + L+Q+GA V A D  G   +H A  Y       H  VA+      A  + +D    +P
Sbjct: 58  VEYLLQHGADVHAKDKGGLVPLHNACSY------GHYEVAELLVKHGAVVNVADLWKFTP 111

Query: 164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
           LH AA KG  +  +LLL   A   ++++DG TPL      G+ +   +L    
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDA 163

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  142 bits (361), Expect = 2e-40
 Identities = 39/165 (23%), Positives = 56/165 (33%), Gaps = 18/165 (10%)

Query: 48  EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA 107
           E  A  S         L  AA     +  + +++ G + NA ++ G+  +      GS  
Sbjct: 2   EPAAGSSMEPSAD--WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSAR 58

Query: 108 VADVLVQNGARVEAADVHGY-RAVHVAAQYGQTSFLNHIVAKY----HADYDASDNEGRS 162
           VA++L+ +GA    AD     R VH AA+ G                 A  D  D  GR 
Sbjct: 59  VAELLLLHGAEPNCADPATLTRPVHDAAREGFLD-----TLVVLHRAGARLDVRDAWGRL 113

Query: 163 PLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE 207
           P+  A   G  D  R L             G       A  G  +
Sbjct: 114 PVDLAEELGHRDVARYLRAAAG-----GTRGSNHARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.1 bits (139), Expect = 5e-10
 Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 5/61 (8%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA +   D  G   +  A      D+A+Y+    G        G       A  G   + 
Sbjct: 101 GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDIP 155

Query: 110 D 110
           D
Sbjct: 156 D 156

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  105 bits (265), Expect = 4e-26
 Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 32/181 (17%)

Query: 93  GQTALHWAAVRGSI-AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY- 149
            ++ L  AA    + A++ +L   G  V      G  A+H+AA Y      +++  A   
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY------DNLEAAMVL 56

Query: 150 --------HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA-------------SQGR 188
                        +   EG++ LH A      + +R LL R A                 
Sbjct: 57  MEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN 116

Query: 189 QDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLS 248
               G  PL +AA  G+ E   +L+  G   ++ A+D  G T   +   + ++  A  + 
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGA--DIRAQDSLGNTVLHILILQPNKTFACQMY 174

Query: 249 N 249
           N
Sbjct: 175 N 175

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  133 bits (338), Expect = 2e-37
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 83  GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
              ++    +    L  AA RG +     L++ GA   A +  G R + V          
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM------- 54

Query: 143 NHI-VAKY----HADYDASDNEGR-SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTP 196
               VA+      A+ + +D      P+H AA +GF DT+ +L    A     D  G  P
Sbjct: 55  GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114

Query: 197 LHWAALRGNVEACTVLVHAG 216
           +  A  +G+ +    L  A 
Sbjct: 115 VDLAEEQGHRDIARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 81.7 bits (203), Expect = 9e-19
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 50  GASVSRPDGNGY-FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAV 108
           GA  +  D       +  AA   F D    +   G  ++  D  G+  +  A  +G   +
Sbjct: 67  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126

Query: 109 ADVLVQNGA 117
           A  L     
Sbjct: 127 ARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGD 85
           GA +   D  G   +  A      DIA+Y+    GD
Sbjct: 101 GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  129 bits (328), Expect = 4e-36
 Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 34/158 (21%)

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
           NG   L  AA N   ++ + +++ G DVNA D NG+T LH AA  G + V  +L++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRL 178
           V A                                   D  GR+PLH AA  G  + ++L
Sbjct: 61  VNAK----------------------------------DKNGRTPLHLAARNGHLEVVKL 86

Query: 179 LLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
           LL   A    +DK+G TPLH AA  G++E   +L+ AG
Sbjct: 87  LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  106 bits (268), Expect = 1e-27
 Identities = 54/156 (34%), Positives = 70/156 (44%), Gaps = 36/156 (23%)

Query: 92  NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHA 151
           NG+T LH AA  G + V  +L++ GA V A D                            
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD---------------------------- 32

Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV 211
                   GR+PLH AA  G  + ++LLL   A    +DK+G TPLH AA  G++E   +
Sbjct: 33  ------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86

Query: 212 LVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           L+ AG      AKDK G TP  LA   GH +V   L
Sbjct: 87  LLEAGADVN--AKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  102 bits (257), Expect = 3e-26
 Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 34/131 (25%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA V+  D NG   L  AA N   ++ + +++ G DVNA D NG+T LH AA  G + V 
Sbjct: 25  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 84

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY 169
            +L++ GA V A                                   D  GR+PLH AA 
Sbjct: 85  KLLLEAGADVNAK----------------------------------DKNGRTPLHLAAR 110

Query: 170 KGFADTIRLLL 180
            G  + ++LLL
Sbjct: 111 NGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 82.8 bits (206), Expect = 3e-19
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA V+  D NG   L  AA N   ++ + +++ G DVNA D NG+T LH AA  G + V 
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117

Query: 110 DVLVQNGA 117
            +L++ GA
Sbjct: 118 KLLLEAGA 125

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  133 bits (338), Expect = 4e-36
 Identities = 37/196 (18%), Positives = 59/196 (30%), Gaps = 24/196 (12%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG 116
                     AA          ++    DV+A D NG+TAL + A  GS     +L + G
Sbjct: 42  VSEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100

Query: 117 ARVEAADVH-GYRAVHVAAQYGQTSFLNHIVAKY---H-ADYDASDNEGRSPLHWAAYKG 171
           A ++  D+  G  A+H+AA Y +       V +      AD +  D  G + L  A    
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYVRPE-----VVEALVELGADIEVEDERGLTALELAREIL 155

Query: 172 FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTP 231
                   +      G +       +    +    E   ++           K   G   
Sbjct: 156 KTTPKGNPMQFGRRIGLEKV---INVLEGQVFEYAEVDEIV----------EKRGKGKDV 202

Query: 232 TQLAYDKGHRQVALYL 247
             L   K         
Sbjct: 203 EYLVRWKDGGDCEWVK 218

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  125 bits (316), Expect = 5e-33
 Identities = 40/198 (20%), Positives = 67/198 (33%), Gaps = 30/198 (15%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD-N 91
           A+   D + L + +E     V   D NG  AL + A        + + + G D++  D  
Sbjct: 52  AARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 109

Query: 92  NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT---SFL------ 142
            G TALH AA      V + LV+ GA +E  D  G  A+ +A +  +T            
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 169

Query: 143 --------NHIVAKYH----ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD 190
                         +      +      +G+   +   +K   D   +          +D
Sbjct: 170 IGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKG----VHVAED 225

Query: 191 --KDGCTPLHWAALRGNV 206
             KD    L +A     +
Sbjct: 226 VAKDYEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 52.2 bits (126), Expect = 9e-08
 Identities = 12/87 (13%), Positives = 19/87 (21%), Gaps = 11/87 (12%)

Query: 21  NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYII 80
                 V +V     +   E            +    G G          +  D      
Sbjct: 169 RIGLEKVINVLEGQVFEYAE---------VDEIVEKRGKGKDVEYLVRWKDGGDCEWVKG 219

Query: 81  DHGGDVNATDNNGQTALHWAAVRGSIA 107
            H  +  A D   +  L +A     I 
Sbjct: 220 VHVAEDVAKDY--EDGLEYAVAESVIG 244

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  127 bits (323), Expect = 1e-34
 Identities = 35/204 (17%), Positives = 55/204 (26%), Gaps = 41/204 (20%)

Query: 13  EAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNF 72
           + I +    +      +       G             A V             AA    
Sbjct: 4   KIIGSRTAGEGA---MEYLIEWKDGHSPSWVPSSYI-AADV---VSEYETPWWTAARKAD 56

Query: 73  ADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHV 132
                 ++    DV+A D NG+TAL + A  GS     +L + GA ++  D         
Sbjct: 57  EQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD--------- 106

Query: 133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
                                      G + LH AA     + +  L+   A    +D+ 
Sbjct: 107 ------------------------MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 142

Query: 193 GCTPLHWAALRGNVEACTVLVHAG 216
           G T L  A            +  G
Sbjct: 143 GLTALELAREILKTTPKGNPMQFG 166

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  126 bits (320), Expect = 3e-34
 Identities = 41/202 (20%), Positives = 59/202 (29%), Gaps = 41/202 (20%)

Query: 47  EEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSI 106
           E +    SR  G G         +  +           DV    +  +T    AA +   
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADE 57

Query: 107 AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHW 166
                L+                                      D DA D  GR+ L +
Sbjct: 58  QALSQLL-----------ED------------------------RDVDAVDENGRTALLF 82

Query: 167 AAYKGFADTIRLLLFRDASQGRQD-KDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKD 225
            A  G    +RLL    A    +D + G T LH AA     E    LV  G   ++  +D
Sbjct: 83  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGA--DIEVED 140

Query: 226 KAGLTPTQLAYDKGHRQVALYL 247
           + GLT  +LA +          
Sbjct: 141 ERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  107 bits (271), Expect = 2e-27
 Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 21/149 (14%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD-N 91
           A+   D + L + +E     V   D NG  AL + A        + + + G D++  D  
Sbjct: 51  AARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108

Query: 92  NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHA 151
            G TALH AA      V + LV+ GA +E  D  G  A+ +A +  +T+           
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT-----PKGN-- 161

Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLL 180
                      P+ +    G    I +L 
Sbjct: 162 -----------PMQFGRRIGLEKVINVLE 179

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  125 bits (317), Expect = 2e-34
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 12/139 (8%)

Query: 83  GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
           G D   T++ G+T LH A+++G I   + L+QNG+     D  G+  +H A  +G     
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG----- 54

Query: 143 NHI-VAKY----HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
            H+ V +      A  + +  +  SPLH AA  G  D ++LLL   AS+   +  G  P+
Sbjct: 55  -HLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113

Query: 198 HWAALRGNVEACTVLVHAG 216
            +           +     
Sbjct: 114 DYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  104 bits (261), Expect = 1e-26
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 9/127 (7%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           AS  GD   +   ++  G+  +  D  G+  L  A  +    + + ++ H   VN T   
Sbjct: 17  ASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ 75

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY--- 149
             + LH AA  G + +  +L+  GA   A ++ G R V         S     +      
Sbjct: 76  NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS-----LLLLPEK 130

Query: 150 HADYDAS 156
           +    AS
Sbjct: 131 NESSSAS 137

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  128 bits (324), Expect = 4e-34
 Identities = 51/260 (19%), Positives = 74/260 (28%), Gaps = 63/260 (24%)

Query: 28  TDVFSASAYGDFEKLRKFVE-------EDGASVSRPDGNGYFALQWAALN---NFADIAQ 77
             +FS  + G  E+L   +E           S       G   L  A LN          
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 78  YIIDHGGD-----------VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHG 126
            ++    D                  G +ALH A  + S+    +LV+NGA V       
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 127 YRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL---FRD 183
           +   H                            G  PL  AA     D +  LL    + 
Sbjct: 124 FFQKHQG---------------------TCFYFGELPLSLAACTKQWDVVTYLLENPHQP 162

Query: 184 ASQGRQDKDGCTPLH----------------WAALRGNVEACTVLVHAGTKQELTAKDKA 227
           AS    D  G T LH                     G ++    L      Q     +  
Sbjct: 163 ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV--QLEEISNHQ 220

Query: 228 GLTPTQLAYDKGHRQVALYL 247
           GLTP +LA  +G  ++  ++
Sbjct: 221 GLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  120 bits (302), Expect = 4e-31
 Identities = 34/183 (18%), Positives = 54/183 (29%), Gaps = 34/183 (18%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN-------------GQTA 96
            A  +     G+ AL  A         + ++++G DV+                  G+  
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 97  LHWAAVRGSIAVADVLVQNG---ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADY 153
           L  AA      V   L++N    A +EA D  G   +H                      
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD--------------- 184

Query: 154 DASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV 213
              ++   S L    Y G       L      +   +  G TPL  AA  G +E    ++
Sbjct: 185 ---NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241

Query: 214 HAG 216
              
Sbjct: 242 QRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 13/77 (16%), Positives = 24/77 (31%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
              +   +     AL     +    +   +         +++ G T L  AA  G I + 
Sbjct: 178 ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237

Query: 110 DVLVQNGARVEAADVHG 126
             ++Q      AA  H 
Sbjct: 238 RHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 1/73 (1%)

Query: 21  NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYII 80
            DN    + +      G  +   +            +  G   L+ AA     +I ++I+
Sbjct: 183 ADNSPENSALVIHMYDGLLQMGARLCPT-VQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241

Query: 81  DHGGDVNATDNNG 93
                  A  ++ 
Sbjct: 242 QREFSGAAAHHHH 254

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  129 bits (325), Expect = 4e-34
 Identities = 53/276 (19%), Positives = 81/276 (29%), Gaps = 62/276 (22%)

Query: 10  SSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVE------EDGASVSRPDG-NGYF 62
           S +         D       +F A A  + ++L   +       +        D   G  
Sbjct: 1   SVSAGEKPPRLYDR----RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKT 56

Query: 63  ALQWAALN---NFADIAQYIIDHGGDVNAT-----------DNNGQTALHWAAVRGSIAV 108
            L  A LN      D    ++D     ++               GQTALH A  R ++ +
Sbjct: 57  CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 109 ADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAA 168
             +LV+NGA V+AA    +                                G  PL  AA
Sbjct: 117 VTLLVENGADVQAAANGDFFKKT--------------------KGRPGFYFGELPLSLAA 156

Query: 169 YKGFADTIRLLL---FRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQEL---- 221
                  ++ LL   ++ A    +D  G T LH      +              E+    
Sbjct: 157 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG 216

Query: 222 ----------TAKDKAGLTPTQLAYDKGHRQVALYL 247
                        ++ GLTP  LA   G   V  Y+
Sbjct: 217 AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 20/105 (19%), Positives = 27/105 (25%), Gaps = 23/105 (21%)

Query: 49  DGASVSRPDGNGYFALQWAAL----------------NNFADIAQYIIDHGGDVNATDNN 92
             A +S  D  G   L                     N    +   +         T+  
Sbjct: 173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK 232

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137
           G T L  AA  G I V   ++Q          H     H AA + 
Sbjct: 233 GLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHH 270

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  122 bits (309), Expect = 3e-33
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
           +    L  AA     D  + ++ +G DVNA D  G T L+ A   G + + +VL++NGA 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY---H-ADYDASDNEGRSPLHWAAYKGFA 173
           V A D  G+  +H+AA         H+ +A+    H AD +A D  G++    +   G  
Sbjct: 73  VNAVDAIGFTPLHLAAFI------GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126

Query: 174 DTIRLLL 180
           D   +L 
Sbjct: 127 DLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 99.0 bits (248), Expect = 8e-25
 Identities = 41/167 (24%), Positives = 61/167 (36%), Gaps = 37/167 (22%)

Query: 82  HGGDVNATD-NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS 140
            G   +    ++    L  AA  G      +L+ NGA V A D                 
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKD----------------- 44

Query: 141 FLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWA 200
                              G +PL+ A   G  + + +LL   A     D  G TPLH A
Sbjct: 45  -----------------EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA 87

Query: 201 ALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           A  G++E   VL+  G   ++ A+DK G T   ++   G+  +A  L
Sbjct: 88  AFIGHLEIAEVLLKHGA--DVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  120 bits (305), Expect = 7e-33
 Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 35/153 (22%)

Query: 56  PDGN-GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQ 114
           P G+       WA  N   D  +  +  G DVN T   G+  LH+AA  G + + + L+ 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 115 NGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFAD 174
            GA + A                                   D    +PL  A Y+G   
Sbjct: 62  KGADINAP----------------------------------DKHHITPLLSAVYEGHVS 87

Query: 175 TIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE 207
            ++LLL + A +  +  DG T       +    
Sbjct: 88  CVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  107 bits (270), Expect = 5e-28
 Identities = 31/156 (19%), Positives = 46/156 (29%), Gaps = 36/156 (23%)

Query: 88  ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
              +       WA   G +      V  G  V                            
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTL------------------------ 37

Query: 148 KYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE 207
                       GR PLH+AA  G  + +  LL + A     DK   TPL  A   G+V 
Sbjct: 38  ----------EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS 87

Query: 208 ACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
              +L+  G  +    K   GLT  +   ++  + +
Sbjct: 88  CVKLLLSKGADKT--VKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  105 bits (266), Expect = 2e-27
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A   GD ++++ +V + G  V+R    G   L +AA     +I ++++  G D+NA D +
Sbjct: 14  ALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG 137
             T L  A   G ++   +L+  GA        G  A        
Sbjct: 73  HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.7 bits (198), Expect = 3e-18
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 155 ASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVH 214
              +       WA   G  D ++  + +     R  + G  PLH+AA  G +E    L+ 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 215 AGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
            G      A DK  +TP   A  +GH      L
Sbjct: 62  KGADIN--APDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 68.6 bits (169), Expect = 3e-14
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+  G  E L   + + GA ++ PD +    L  A         + ++  G D      +
Sbjct: 47  AADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD 105

Query: 93  GQTALHWAAVRGSIAV 108
           G TA      +   A+
Sbjct: 106 GLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 187 GRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALY 246
           G           WA   G+++     V  G   ++    + G  P   A D G  ++  +
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGE--DVNRTLEGGRKPLHYAADCGQLEILEF 58

Query: 247 L 247
           L
Sbjct: 59  L 59

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  122 bits (307), Expect = 2e-32
 Identities = 23/180 (12%), Positives = 51/180 (28%), Gaps = 16/180 (8%)

Query: 28  TDVFSASAYGDFEKLRKFVEEDGASVSRPDGN---GYFALQWAALNNFADIAQYIIDHGG 84
             V +A+  G +E   +  E+ G             Y  L+         I+ ++I+ G 
Sbjct: 8   RTVSAAAMLGTYEDFLELFEK-GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 85  DVNATDNNGQTALHWAAVRG------SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ 138
           D+ +    G T        G      +  +  + ++ GA + A        V        
Sbjct: 67  DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126

Query: 139 TSFLNH------IVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD 192
                       I ++        D  G + L +         ++++         ++  
Sbjct: 127 VDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  117 bits (296), Expect = 6e-31
 Identities = 27/183 (14%), Positives = 53/183 (28%), Gaps = 17/183 (9%)

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNAT---DNNGQTALHWAAVRGSIAVADVLVQN 115
           + Y  +  AA+    +    + + G +   +    N     L          ++  L+  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 116 GARVEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY---H-ADYDASDNEGRSPLHWAAYK 170
           GA +++    G        Q G         + K      AD  A     +  +    + 
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 171 GFADTIRLLLFRD---ASQG----RQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTA 223
            F D   ++       +  G     +DK G T L +        A  ++     K     
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK--YNL 182

Query: 224 KDK 226
           K+ 
Sbjct: 183 KEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 19/159 (11%), Positives = 34/159 (21%), Gaps = 39/159 (24%)

Query: 92  NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHA 151
           +    +  AA+ G+      L + G                                   
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYED-------------------------------K 33

Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGN------ 205
           +     N     L     +        L+ + A    + K+G T        G       
Sbjct: 34  ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGT 93

Query: 206 VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA 244
            E C + +  G   ++TA  K                  
Sbjct: 94  TELCKIFLEKGA--DITALYKPYKIVVFKNIFNYFVDEN 130

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 11/100 (11%), Positives = 27/100 (27%), Gaps = 5/100 (5%)

Query: 155 ASDNEGRSPLHWAAYKGFADTIRLLLFRDA---SQGRQDKDGCTPLHWAALRGNVEACTV 211
           ++       +  AA  G  +    L  +         +       L         +    
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 212 LVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
           L++ G   ++ ++ K G T     +  G   +       +
Sbjct: 61  LINKGA--DIKSRTKEGTTLFFPLFQGGGNDITGTTELCK 98

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  112 bits (284), Expect = 5e-30
 Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 34/142 (23%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG 116
             +G   L  AA N  A+  + ++  G DVNA   +G T LH AA  G   +  +L+  G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 117 ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI 176
           A V A                                     +G +P H A   G  + +
Sbjct: 66  ADVNAR----------------------------------SKDGNTPEHLAKKNGHHEIV 91

Query: 177 RLLLFRDASQGRQDKDGCTPLH 198
           +LL  + A    +        H
Sbjct: 92  KLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 99.4 bits (249), Expect = 3e-25
 Identities = 37/149 (24%), Positives = 49/149 (32%), Gaps = 38/149 (25%)

Query: 83  GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFL 142
           G        +G T LH AA  G       L+  GA V A                     
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS------------------- 39

Query: 143 NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL 202
                           +G +PLH AA  G A+ ++LLL + A    + KDG TP H A  
Sbjct: 40  ---------------KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84

Query: 203 RGNVEACTVLVHAGTKQELTAKDKAGLTP 231
            G+ E   +L   G      A+       
Sbjct: 85  NGHHEIVKLLDAKGADVN--ARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 81.3 bits (202), Expect = 8e-19
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 154 DASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV 213
                +G +PLH AA  G A+ ++ LL + A    + KDG TPLH AA  G+ E   +L+
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 214 HAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
             G   ++ A+ K G TP  LA   GH ++   L
Sbjct: 63  AKGA--DVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  117 bits (294), Expect = 2e-29
 Identities = 34/266 (12%), Positives = 90/266 (33%), Gaps = 20/266 (7%)

Query: 1   MASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNG 60
             SS ++++ +  + P  N N+ +  +        + + +++   +  D ++ +   G+ 
Sbjct: 38  FLSSPLKIMKALPS-PVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSS 96

Query: 61  YFALQWAALNNFAD-IAQYIIDHGGDVNA-TDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
               Q  + ++    +     +   ++N   D +G T LHW     ++ +   LV++G+ 
Sbjct: 97  NQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN 156

Query: 119 VEAADVHGYRAVHVAAQYG---QTSFLNHIVAKYHADYDASDNEGRSPLHWAA----YKG 171
               D  G   +  A +      +     ++   +      D+  R+ LH         G
Sbjct: 157 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 216

Query: 172 FADTIR--------LLLFRDASQGRQDKDGCTPLHWAALRGNVEAC--TVLVHAGTKQEL 221
            +   +         ++ +     +   +              ++    + +       L
Sbjct: 217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276

Query: 222 TAKDKAGLTPTQLAYDKGHRQVALYL 247
            A+D  G T   +A   G+  +   L
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  110 bits (275), Expect = 8e-27
 Identities = 27/188 (14%), Positives = 59/188 (31%), Gaps = 20/188 (10%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNN----FADIAQYIIDHGGDVNA 88
            ++  + E ++  V+  G++    D  G   L  A  +            +      +  
Sbjct: 138 LTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196

Query: 89  TDNNGQTALHWAAVRGSI------------AVADVLVQNGARVEAADVHGYRAVHVAAQY 136
            D+  +T LH   +   +             +   +V+   R   +  +   +       
Sbjct: 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256

Query: 137 GQTSFLNHIV---AKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
            +   +   +          +A D+ G + L+ AA  G    +  LL   A     +K G
Sbjct: 257 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316

Query: 194 CTPLHWAA 201
             P+ + A
Sbjct: 317 LRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 87.8 bits (217), Expect = 4e-19
 Identities = 28/208 (13%), Positives = 57/208 (27%), Gaps = 9/208 (4%)

Query: 48  EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA 107
           +D    + P       L    L++   I + +     + N      +  L          
Sbjct: 18  DDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQE 77

Query: 108 VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA-SDNEGRSPLHW 166
           +   L  + +   +      +     +       +N        + +   D  G +PLHW
Sbjct: 78  MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW 137

Query: 167 AAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGN---VEACTVLVHAGTKQELTA 223
                  + ++ L+   +++   D  G + L  A    N         L+       L  
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL-YPCLIL 196

Query: 224 KDKAGLTP----TQLAYDKGHRQVALYL 247
           +D    T        +   G    A Y 
Sbjct: 197 EDSMNRTILHHIIITSGMTGCSAAAKYY 224

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.1 bits (184), Expect = 5e-15
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 32  SASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGG----DVN 87
           SA+A    + L  ++ +      +   N   +          D     +D        +N
Sbjct: 218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277

Query: 88  ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQ 135
           A D+NG T L+ AA  G+I++ D L+  GA    A+  G R V   A 
Sbjct: 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.5 bits (167), Expect = 8e-13
 Identities = 13/96 (13%), Positives = 33/96 (34%)

Query: 6   IEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQ 65
           +  +   +  P ++  + + +  +  +        +           ++  D NG   L 
Sbjct: 229 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 288

Query: 66  WAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA 101
            AA      I   ++D+G D    + +G   + + A
Sbjct: 289 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  114 bits (287), Expect = 7e-29
 Identities = 51/274 (18%), Positives = 73/274 (26%), Gaps = 64/274 (23%)

Query: 28  TDVFSASAYGDFEKLRKFVE---EDGASV----SRPDGNGYFALQWAALNNFA---DIAQ 77
             +F   + G  + L   +         +     R    G   L  A LN  A   D   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 78  YIIDHGGD-----------VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHG 126
            ++D                      GQTALH A  R      ++LV+ GA V A     
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 127 YRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL---FRD 183
           +                        D       G  PL  AA       +  L     + 
Sbjct: 127 FFQPK--------------------DEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166

Query: 184 ASQGRQDKDGCTPLHWAALRGNVEACTV---------LVHAG-----TKQELTAKDKAGL 229
           A   RQD  G T LH      +               L+                +  GL
Sbjct: 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL 226

Query: 230 TPTQLAYDKGHRQVALYL------SNAQHMHRNH 257
           +P  +A   G   +  ++        A H H +H
Sbjct: 227 SPLMMAAKTGKIGIFQHIIRREIADAAAHHHHHH 260

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  108 bits (272), Expect = 5e-26
 Identities = 43/272 (15%), Positives = 78/272 (28%), Gaps = 36/272 (13%)

Query: 11  STEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPD--GNGYFALQWAA 68
           +++ I    Q +N  A      A+  G    L +  E    +          Y A + AA
Sbjct: 116 TSDEIVKVIQAENYQAF---RLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRLAA 171

Query: 69  LNNFADIAQYIIDHGGDVNATD--NNGQTALHWAAVR-GSIAVADVLVQNGARVEAADVH 125
            N    +   + +                A  WAAV  G   V + L+     +  A++H
Sbjct: 172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH 231

Query: 126 GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN------------EGRSPLHWAAYKGFA 173
            +              +N +   + A   ++ +            +G   L     +   
Sbjct: 232 EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE 291

Query: 174 DTIRLLLF--------RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKD 225
             +  + F          A       D    L  A   GN  AC +L+   +   LT  +
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKAN 351

Query: 226 KAGLTPTQLAYDKGHRQVALYLSNAQHMHRNH 257
                   +    G   +       +H H +H
Sbjct: 352 -----NYYINETGGRLDLRAVA--LEHHHHHH 376

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 96.6 bits (240), Expect = 7e-22
 Identities = 36/264 (13%), Positives = 68/264 (25%), Gaps = 33/264 (12%)

Query: 1   MASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNG 60
           M  S  E +     +P     +    +  ++ A    + ++L     + G    + +   
Sbjct: 42  MTLSYKEAIH--IFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGI---KSEVIC 96

Query: 61  YFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVE 120
           + A      +   D    ++     V         A   AA  G + V + L +      
Sbjct: 97  FVAAITGCSSAL-DTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI 155

Query: 121 AADVH--GYRAVHVAAQYGQTSFLNHI-VAKY----HADYDASD--NEGRSPLHWAAY-K 170
            A +    Y A  +AA+ G      H+ V             +    E      WAA  +
Sbjct: 156 MAMIQAENYHAFRLAAENG------HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 209

Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKD----- 225
           G  + I  LL         +                     L       +L+  D     
Sbjct: 210 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 269

Query: 226 ------KAGLTPTQLAYDKGHRQV 243
                   G    +    +    +
Sbjct: 270 VTKSECLQGFYMLRNLIRRNDEVL 293

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 20/125 (16%), Positives = 31/125 (24%), Gaps = 4/125 (3%)

Query: 123 DVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR 182
            V     ++ A        L     K     +                   DT+ LLL  
Sbjct: 62  QVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFV---AAITGCSSAL-DTLCLLLTS 117

Query: 183 DASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQ 242
           D        +       AA  G++     L      + +           +LA + GH  
Sbjct: 118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 177

Query: 243 VALYL 247
           V   L
Sbjct: 178 VLNRL 182

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 97.0 bits (243), Expect = 9e-25
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 7/92 (7%)

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
           NG   L  AA N   ++ + +++ G DVNA D NG+T LH AA  G + V  +L++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHI-VAKY 149
           V A D +G   +H+AA+ G      H+ V K 
Sbjct: 61  VNAKDKNGRTPLHLAARNG------HLEVVKL 86

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 89.3 bits (223), Expect = 6e-22
 Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 34/125 (27%)

Query: 92  NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHA 151
           NG+T LH AA  G + V  +L++ GA V A D                            
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD---------------------------- 32

Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV 211
                   GR+PLH AA  G  + ++LLL   A    +DK+G TPLH AA  G++E   +
Sbjct: 33  ------KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86

Query: 212 LVHAG 216
           L+ AG
Sbjct: 87  LLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 82.4 bits (205), Expect = 2e-19
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+  G  E ++  +E  GA V+  D NG   L  AA N   ++ + +++ G DVNA D N
Sbjct: 9   AARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 67

Query: 93  GQTALHWAAVRGSIAVADVLVQNGA 117
           G+T LH AA  G + V  +L++ GA
Sbjct: 68  GRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.6 bits (195), Expect = 4e-18
 Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
           GR+PLH AA  G  + ++LLL   A    +DK+G TPLH AA  G++E   +L+ AG   
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-- 59

Query: 220 ELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           ++ AKDK G TP  LA   GH +V   L
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 95.3 bits (238), Expect = 7e-24
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
            S++         V   G+ +     +    L  AA     D  + ++ +G DV A D N
Sbjct: 1   GSSHHHHHHSSGLVPR-GSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI 145
           G T LH AA  G + V  +L++ GA V A D  G  A  ++   G       +
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 79.9 bits (198), Expect = 2e-18
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 133 AAQYGQTSFLNHIVAKYHADYDAS-DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDK 191
            + +      +H  +       +   ++    L  AA  G  D +R+L+   A    +DK
Sbjct: 1   GSSHH-----HHHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55

Query: 192 DGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
           +G TPLH AA  G++E   +L+ AG   ++ A+DK G T   ++ D G+  +A  L
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGA--DVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 71.0 bits (173), Expect = 2e-13
 Identities = 41/171 (23%), Positives = 59/171 (34%), Gaps = 36/171 (21%)

Query: 60  GYFALQWAALNNFADIAQYIIDHGGDVNATDNN--GQTALHWAAVRGSIAVADVLVQNGA 117
           G    + +            + HG DVN  +      T L  A    S+   + L+QNGA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 118 RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIR 177
            V                                  + +D+ GR PLH A   G      
Sbjct: 260 NV----------------------------------NQADSAGRGPLHHATILGHTGLAC 285

Query: 178 LLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAG 228
           L L R A  G +D +G  PL  A    N +  T+L  A  ++   A+ +AG
Sbjct: 286 LFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 65.6 bits (159), Expect = 1e-11
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 2/138 (1%)

Query: 4   SEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGN--GY 61
                   ++  P      +      +F AS +             GA V+  +G     
Sbjct: 177 RPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNA 236

Query: 62  FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA 121
             L  A   N     ++++ +G +VN  D+ G+  LH A + G   +A + ++ GA + A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA 296

Query: 122 ADVHGYRAVHVAAQYGQT 139
            D  G   + +A +    
Sbjct: 297 RDSEGRDPLTIAMETANA 314

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 67.7 bits (165), Expect = 9e-13
 Identities = 13/73 (17%), Positives = 32/73 (43%)

Query: 67  AALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHG 126
           +       I  +++ + G+++     G TALH+  +  +     +L++  A +E A+  G
Sbjct: 179 SVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG 238

Query: 127 YRAVHVAAQYGQT 139
              + +A +    
Sbjct: 239 ETPLDIAKRLKHE 251

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 65.4 bits (159), Expect = 6e-12
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 129 AVHVAAQYGQTSFLNHI--VAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQ 186
           A+H+A +    + L+ +  + +   + D    +G + LH+      A+ ++LLL   AS 
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231

Query: 187 GRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
              ++ G TPL  A    +     +L  A + +
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSGR 264

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 61.9 bits (150), Expect = 8e-11
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 156 SDNEGRSPLHWA---AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
                 + LH A     +     +  L+    +  +Q   G T LH+  L  N E   +L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 213 VHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
           +      E    +++G TP  +A    H      L+ A 
Sbjct: 225 LRGKASIE--IANESGETPLDIAKRLKHEHCEELLTQAL 261

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.5 bits (128), Expect = 5e-08
 Identities = 13/70 (18%), Positives = 31/70 (44%)

Query: 45  FVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRG 104
           F+ ++  ++ +  G G  AL +  L + A+  + ++     +   + +G+T L  A    
Sbjct: 190 FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK 249

Query: 105 SIAVADVLVQ 114
                ++L Q
Sbjct: 250 HEHCEELLTQ 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 48  EDGASVSRPDGN--GYFALQWAALNNFAD---IAQYIIDHGGDVNATDNNGQTALHWAAV 102
           + G  +  PD        L  A          +  +II +GG ++A   +G TALH+AA+
Sbjct: 157 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 216

Query: 103 RGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS 140
                   +L++  A V   +  G  A+ +A +     
Sbjct: 217 YNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 254

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 156 SDNEGRSPLHWA---AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
           +       LH A   A +     +  ++        +  DG T LH+AAL    +   +L
Sbjct: 167 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 226

Query: 213 VHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
           +           ++AG T   +A  K H++    L  AQ
Sbjct: 227 LKGRALVG--TVNEAGETALDIARKKHHKECEELLEQAQ 263

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.8 bits (160), Expect = 6e-12
 Identities = 30/148 (20%), Positives = 46/148 (31%), Gaps = 43/148 (29%)

Query: 77  QYIIDHGGDVNATDNN------GQTALHWAAVRG---SIAVADVLVQNGARVEAADVHGY 127
                +G D              +  LH A       S+ + D ++QNG           
Sbjct: 168 LEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG---------- 217

Query: 128 RAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQG 187
                                     DA   +G + LH+AA     D ++LLL   A  G
Sbjct: 218 ------------------------HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253

Query: 188 RQDKDGCTPLHWAALRGNVEACTVLVHA 215
             ++ G T L  A  + + E   +L  A
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 64.6 bits (157), Expect = 1e-11
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 75  IAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA 134
           +  +II +GG ++A   +G TALH+AA+        +L++  A V   +  G  A+ +A 
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267

Query: 135 QYGQTS 140
           +     
Sbjct: 268 KKHHKE 273

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 156 SDNEGRSPLHWAAYKGFADTI---RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
           +       LH A       ++     ++        +  DG T LH+AAL    +   +L
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 213 VHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
           +           ++AG T   +A  K H++    L  AQ
Sbjct: 246 LKGRALVG--TVNEAGETALDIARKKHHKECEELLEQAQ 282

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 19/96 (19%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           G  +     +G  AL +AAL N  D  + ++     V   +  G+TAL  A  +      
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHI 145
           ++L Q                   AQ G  +F  H+
Sbjct: 276 ELLEQ-------------------AQAGTFAFPLHV 292

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 89/579 (15%), Positives = 156/579 (26%), Gaps = 192/579 (33%)

Query: 13  EAIPNENQNDNQAAVTDVFSAS---AYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAAL 69
             I  E +    + +T ++       Y D +   K+      +VSR     Y  L+ A L
Sbjct: 96  SPIKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAKY------NVSRLQP--YLKLRQALL 145

Query: 70  NNFADIAQYIIDHG--GDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD--VH 125
                 A+ ++  G  G       +G+T +            DV   +       D  + 
Sbjct: 146 E--LRPAKNVLIDGVLG-------SGKTWV----------ALDVC-LSYKVQCKMDFKIF 185

Query: 126 ----GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA--------AYKGFA 173
                               L  I   + +  D S N  +  +H            K + 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYE 244

Query: 174 DTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQ 233
           +   LL+  +     Q+        W A   +   C +L+        T + K       
Sbjct: 245 NC--LLVLLNV----QNAK-----AWNAFNLS---CKILL--------TTRFK------- 275

Query: 234 LAYDKGHRQVALYLSNAQHMHR--NHWGDKICGRKTSDIGYAPILFSIIILCII--LFIN 289
                   QV  +LS A   H   +H    +   +         L    + C    L   
Sbjct: 276 --------QVTDFLSAATTTHISLDHHSMTLTPDEVKS------LLLKYLDCRPQDL--- 318

Query: 290 SVVAAPRLTKVTAVLGLWSWTVVSLAVGSLIMFYRCSS---KDPGYIKRSQDIDNHTDSE 346
                PR    T          +S+ +   I     +    K     K +  I++  +  
Sbjct: 319 -----PREVLTTNPR------RLSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 347 DPL--------LTIDLNNSPIWTGN----WSQLCPTCKIIRPVRSKHCPACKCCVEQFDH 394
           +P         L++   ++ I T      W  +  +                  V    +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-----------------VMVVVN 409

Query: 395 HCPWISNCVGKRNKRD-FFIFLCLGTLTSYLASGIAIHRI-------------WTAPHLP 440
                S  V K+ K     I      L   L +  A+HR                     
Sbjct: 410 KLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 441 ADGTWIHYVLVHPGLV-------------LFLVLDTI---ILIAGT----------TLTS 474
            D  +  ++  H  L              +FL    +   I    T          TL  
Sbjct: 469 LDQYFYSHIGHH--LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 475 IQAYQ--IARNITTNE-LANSVRYDYLRGPDGR-FRNPY 509
           ++ Y+  I  N    E L N++  D+L   +     + Y
Sbjct: 527 LKFYKPYICDNDPKYERLVNAIL-DFLPKIEENLICSKY 564

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	541
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.5e-40  Score=317.28  Aligned_cols=231  Identities=29%  Similarity=0.383  Sum_probs=186.6

Q ss_pred             CCCCCCcchhhHHHHHHcC-------------CHHHHHHHHHhcCCCC-ccCCCCCchHHHHHHHcCcHHHHHHHHhCCC
Q 009183           19 NQNDNQAAVTDVFSASAYG-------------DFEKLRKFVEEDGASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGG   84 (541)
Q Consensus        19 ~~~~~~~~~~~L~~A~~~g-------------~~~~v~~ll~~~~~~~-~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~   84 (541)
                      .+..+..|.||||.|+..|             +.+.++.|++. +.++ +..|.+|.||||+|+..|+.+++++|+++|+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            3456788999999999987             89999999987 5555 4568999999999999999999999999999


Q ss_pred             CCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCC-CCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcH
Q 009183           85 DVNATDNNGQTALHWAAVRGSIAVADVLVQNGA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSP  163 (541)
Q Consensus        85 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  163 (541)
                      +++.++..|.||||+|+..|+.+++++|+++|+ +++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~  160 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSA  160 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBCTTSCBH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence            999999999999999999999999999999997 8999999999999999999999999999986 99999999999999


Q ss_pred             HHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHH
Q 009183          164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV  243 (541)
Q Consensus       164 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i  243 (541)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|+||+++|+++|+.++
T Consensus       161 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga--~~~~~d~~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA--NRDITDHMDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC--CccccccCCCCHHHHHHHcCCHHH
Confidence            999999999999999999999999999999999999999999999999999998  678899999999999999999999


Q ss_pred             HHHHHHhhhh
Q 009183          244 ALYLSNAQHM  253 (541)
Q Consensus       244 ~~~L~~~~~~  253 (541)
                      +++|......
T Consensus       239 ~~~l~~~~~~  248 (253)
T 1yyh_A          239 VRLLDLEHHH  248 (253)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHhhh
Confidence            9999876543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6e-40  Score=308.59  Aligned_cols=226  Identities=27%  Similarity=0.377  Sum_probs=217.9

Q ss_pred             CcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh
Q 009183           24 QAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR  103 (541)
Q Consensus        24 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~  103 (541)
                      ..+.++|+.|++.|+.+.++++++..+..++.+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence            45678999999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 009183          104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD  183 (541)
Q Consensus       104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  183 (541)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  162 (231)
T 3aji_A           84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK  162 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999986 9999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          184 ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       184 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      ++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.||+++|++.++.+++++|.++++
T Consensus       163 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA--SIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            9999999999999999999999999999999998  778899999999999999999999999998765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-39  Score=314.04  Aligned_cols=249  Identities=23%  Similarity=0.258  Sum_probs=231.9

Q ss_pred             CCceEEeeccccCCCCCCCC-CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHh
Q 009183            3 SSEIEVVSSTEAIPNENQND-NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIID   81 (541)
Q Consensus         3 ~~~~~~~~~l~~~~~~~~~~-~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~   81 (541)
                      .+++++++.+.+...+.... +..+.+|||.|++.|+.++++.|++. +.+++.+|.+|.||||+|+..|+.+++++|++
T Consensus        15 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   93 (285)
T 1wdy_A           15 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLS   93 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            45667777777665555544 77889999999999999999999876 89999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCcc----------ccCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 009183           82 HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAA----------DVHGYRAVHVAAQYGQTSFLNHIVAKYHA  151 (541)
Q Consensus        82 ~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~----------d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~  151 (541)
                      +|++++..+..|.||||+|+..|+.+++++|+++|++++.+          +..|.||||.|+..|+.+++++|++..+.
T Consensus        94 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  173 (285)
T 1wdy_A           94 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA  173 (285)
T ss_dssp             TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC
T ss_pred             cCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999887          78899999999999999999999998899


Q ss_pred             CcccCCCCCCcHHHHHHHhCc----HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCC
Q 009183          152 DYDASDNEGRSPLHWAAYKGF----ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVH-AGTKQELTAKDK  226 (541)
Q Consensus       152 ~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~d~  226 (541)
                      +++..|..|.||||+|+..++    .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|+  +++.+|.
T Consensus       174 ~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~--~~~~~~~  251 (285)
T 1wdy_A          174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI--EINDTDS  251 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC--CTTCCCT
T ss_pred             CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC--CccccCC
Confidence            999999999999999999999    899999999999999999999999999999999999999999 777  7888999


Q ss_pred             CCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183          227 AGLTPTQLAYDKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       227 ~g~t~l~~A~~~~~~~i~~~L~~~~~~~  254 (541)
                      .|.|||++|++.|+.+++++|++++...
T Consensus       252 ~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~  279 (285)
T 1wdy_A          252 DGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            9999999999999999999999988754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.4e-40  Score=310.82  Aligned_cols=229  Identities=24%  Similarity=0.307  Sum_probs=212.7

Q ss_pred             CCCCCcchhhHHHHHHcCCHHHHHHHHH---hcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchH
Q 009183           20 QNDNQAAVTDVFSASAYGDFEKLRKFVE---EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA   96 (541)
Q Consensus        20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tp   96 (541)
                      ...|..|.||||.|++.|+.+.++.+++   +.+.+++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            3467889999999999999999999997   4789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCC----CCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCC-CCCCcHHHHHHHhC
Q 009183           97 LHWAAVRGSIAVADVLVQNGA----RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD-NEGRSPLHWAAYKG  171 (541)
Q Consensus        97 L~~A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~L~~A~~~~  171 (541)
                      ||+|+..|+.+++++|++.++    +++.+|..|.||||.|+..|+.+++++|++. +.+++..+ ..|.||||+|+..|
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcC
Confidence            999999999999999999987    8899999999999999999999999999987 89999888 88999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183          172 FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ  251 (541)
Q Consensus       172 ~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~  251 (541)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.||+++|++.|+.++++.|.+.+
T Consensus       162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA--DSSLKNCHNDTPLMVARSRRVIDILRGKATRP  239 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCC--CCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence            9999999999999999999999999999999999999999999998  77889999999999999999999999987754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=9.7e-39  Score=301.54  Aligned_cols=228  Identities=28%  Similarity=0.406  Sum_probs=215.9

Q ss_pred             CCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHH
Q 009183           18 ENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTAL   97 (541)
Q Consensus        18 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL   97 (541)
                      +.+..+..|.|||+.|+..|+.++++.|++. |.+++..+.+|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL   81 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence            3456778899999999999999999999876 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhCC-CCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHH
Q 009183           98 HWAAVRGSIAVADVLVQNG-ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI  176 (541)
Q Consensus        98 ~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v  176 (541)
                      |+|+..|+.+++++|++.| .+++.+|..|.||||.|+..|+.+++++|++. |.+++.+|..|.||||+|+..|+.+++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~  160 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIA  160 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence            9999999999999999999 89999999999999999999999999999986 999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHH
Q 009183          177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSN  249 (541)
Q Consensus       177 ~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~  249 (541)
                      ++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|+||+++|+++++.+.+..+.+
T Consensus       161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--d~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS--DVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC--CTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCC--CCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998  778899999999999999999866655544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.5e-38  Score=307.32  Aligned_cols=227  Identities=23%  Similarity=0.286  Sum_probs=213.4

Q ss_pred             CCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchH
Q 009183           17 NENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA   96 (541)
Q Consensus        17 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tp   96 (541)
                      .....++..|.||||.|+..|+.+.++.|++. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus        50 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~  128 (285)
T 3d9h_A           50 NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP  128 (285)
T ss_dssp             CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT-TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCH
T ss_pred             CcccCCCccCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            34556788899999999999999999999986 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHH
Q 009183           97 LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI  176 (541)
Q Consensus        97 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v  176 (541)
                      ||+|+..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v  206 (285)
T 3d9h_A          129 LFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACV  206 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            999999999999999999999998654 599999999999999999999986 999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183          177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ  251 (541)
Q Consensus       177 ~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~  251 (541)
                      ++|++.|++++. |..|.||||+|+..|+.+++++|+++|+  +++.+|..|+||+++|+  ++.+++++|+++.
T Consensus       207 ~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--d~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~  276 (285)
T 3d9h_A          207 KKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGA--DTQAKNAEGKRPVELVP--PESPLAQLFLERE  276 (285)
T ss_dssp             HHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred             HHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence            999999999995 8889999999999999999999999998  78889999999999999  4578999998873

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.4e-38  Score=315.59  Aligned_cols=244  Identities=27%  Similarity=0.323  Sum_probs=221.1

Q ss_pred             CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 009183           22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA  101 (541)
Q Consensus        22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~  101 (541)
                      .+..+.++|+.|++.|+.+.+++++.+.+.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus        20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   99 (351)
T 3utm_A           20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence            35567899999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCC------------------------
Q 009183          102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD------------------------  157 (541)
Q Consensus       102 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d------------------------  157 (541)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |.+++..+                        
T Consensus       100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~  178 (351)
T 3utm_A          100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYEFK  178 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999986 77766543                        


Q ss_pred             ------------------------------CCCCcHHHHHHHh---CcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcC
Q 009183          158 ------------------------------NEGRSPLHWAAYK---GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRG  204 (541)
Q Consensus       158 ------------------------------~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g  204 (541)
                                                    ..|.||||+|+..   +..+++++|++.|++++.+|..|.||||+|+..|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  258 (351)
T 3utm_A          179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA  258 (351)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcC
Confidence                                          5677999999998   5689999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHH
Q 009183          205 NVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFS  278 (541)
Q Consensus       205 ~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~  278 (541)
                      +.+++++|+++|+  +++.+|..|.|||++|++.|+.+++++|++++....          .....|.+|+.++
T Consensus       259 ~~~~v~~Ll~~ga--~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----------~~~~~g~tal~~a  320 (351)
T 3utm_A          259 HNDVMEVLHKHGA--KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS----------IISLQGFTAAQMG  320 (351)
T ss_dssp             CHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHS
T ss_pred             CHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC----------CcCCCCCChhhhh
Confidence            9999999999998  788899999999999999999999999999877543          1234467776665

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=311.12  Aligned_cols=223  Identities=25%  Similarity=0.310  Sum_probs=179.0

Q ss_pred             CCCCCcchhhHHHHHHcCCHHHHHHHHHhcCC-------CCccCCCCCchHHHHHHHcCcH-HHHHHHHhCCCCCCCCCC
Q 009183           20 QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGA-------SVSRPDGNGYFALQWAALNNFA-DIAQYIIDHGGDVNATDN   91 (541)
Q Consensus        20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-------~~~~~d~~g~t~Lh~A~~~~~~-~iv~~Ll~~g~~~~~~~~   91 (541)
                      ...|..+.++|+.||+.|+.++|+.||+....       .++..|..|.||||.|+..++. .+++.|++.|+++|.+|.
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~   84 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ   84 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC
Confidence            34566788999999999999999999976332       2567788899999999988765 588999999999999999


Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhC
Q 009183           92 NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKG  171 (541)
Q Consensus        92 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~  171 (541)
                      +|.||||+|+..|+.+++++|++.|++++.++..|.||+|.|+..++.++++.|++. |++++.+|..|.||||+|+..|
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGG  163 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999999999986 9999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHH
Q 009183          172 FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL  247 (541)
Q Consensus       172 ~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L  247 (541)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|+|||++|+++++  ++++|
T Consensus       164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Ga--d~~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA--SVQVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC--CSCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence            9999999999999999999999999999999999999999999998  788899999999999988765  44444

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.9e-38  Score=323.54  Aligned_cols=227  Identities=27%  Similarity=0.415  Sum_probs=112.7

Q ss_pred             CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 009183           22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA  101 (541)
Q Consensus        22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~  101 (541)
                      .+..+.+||+.|+..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus       142 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  220 (437)
T 1n11_A          142 MTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA  220 (437)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence            333444444444444444444444432 4444444444444444444444444444444444444444444445555555


Q ss_pred             HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh
Q 009183          102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF  181 (541)
Q Consensus       102 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  181 (541)
                      ..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++
T Consensus       221 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  299 (437)
T 1n11_A          221 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIK  299 (437)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            55555555555555555444444555555555555555555555443 44445555555555555555555555555555


Q ss_pred             cCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          182 RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       182 ~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      +|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.|||++|++.|+.+++++|++++.
T Consensus       300 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--d~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga  368 (437)
T 1n11_A          300 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA--DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA  368 (437)
T ss_dssp             HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC--CCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcC
Confidence            555555555555555555555555555555555554  344445555555555555555555555554443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-38  Score=321.41  Aligned_cols=228  Identities=24%  Similarity=0.325  Sum_probs=213.9

Q ss_pred             CCcchhhHHHHHHcCCHHHHHHHHH-------hcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCch
Q 009183           23 NQAAVTDVFSASAYGDFEKLRKFVE-------EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQT   95 (541)
Q Consensus        23 ~~~~~~~L~~A~~~g~~~~v~~ll~-------~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t   95 (541)
                      +..|.||||.|+..|+.+.++.|+.       +.|+++|.+|.+|.||||+|+..|+.++|++|+++|++++..+..|.|
T Consensus       122 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t  201 (373)
T 2fo1_E          122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS  201 (373)
T ss_dssp             CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             CcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCC
Confidence            3789999999999999998888774       679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhCC---CCCCccccCCChHHHHHHHcC---CHHHHHHHHHhcCCCccc--------CCCCCC
Q 009183           96 ALHWAAVRGSIAVADVLVQNG---ARVEAADVHGYRAVHVAAQYG---QTSFLNHIVAKYHADYDA--------SDNEGR  161 (541)
Q Consensus        96 pL~~A~~~g~~~~v~~Ll~~g---~~~~~~d~~g~t~l~~A~~~g---~~~~v~~Ll~~~~~~~~~--------~d~~g~  161 (541)
                      |||+|+..|+.+++++|++++   ++++.+|..|.||||+|+..+   +.+++++|++. +.+++.        .|..|.
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~  280 (373)
T 2fo1_E          202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGR  280 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSCCCC
T ss_pred             HHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccccCC
Confidence            999999999999999999998   899999999999999999988   78999999987 888775        677899


Q ss_pred             cHHHHHHHhCcHHHHHHHHhcC-CCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCc
Q 009183          162 SPLHWAAYKGFADTIRLLLFRD-ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGH  240 (541)
Q Consensus       162 t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~  240 (541)
                      ||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.|||++|+++|+
T Consensus       281 t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga--d~~~~d~~g~t~l~~A~~~g~  358 (373)
T 2fo1_E          281 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA--SVEAVDATDHTARQLAQANNH  358 (373)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CSSCCCSSSCCHHHHHHHTTC
T ss_pred             CHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CccCCCCCCCCHHHHHHHcCC
Confidence            9999999999999999999876 9999999999999999999999999999999998  788899999999999999999


Q ss_pred             hHHHHHHHHhhhh
Q 009183          241 RQVALYLSNAQHM  253 (541)
Q Consensus       241 ~~i~~~L~~~~~~  253 (541)
                      .+++++|+++++.
T Consensus       359 ~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          359 HNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHHHHTTC--
T ss_pred             HHHHHHHHhcCcc
Confidence            9999999987653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4e-37  Score=298.29  Aligned_cols=243  Identities=25%  Similarity=0.354  Sum_probs=223.2

Q ss_pred             CcchhhHHHHHHcCCHHHHHHHHHhcCCCCccC-CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 009183           24 QAAVTDVFSASAYGDFEKLRKFVEEDGASVSRP-DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAV  102 (541)
Q Consensus        24 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~  102 (541)
                      ..|.++|+.|++.|+.+.++.|++. +.+++.. +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus         3 ~~g~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   81 (285)
T 1wdy_A            3 VEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            3578999999999999999999986 7888877 7889999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccC----------CCCCCcHHHHHHHhCc
Q 009183          103 RGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS----------DNEGRSPLHWAAYKGF  172 (541)
Q Consensus       103 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~----------d~~g~t~L~~A~~~~~  172 (541)
                      .|+.+++++|+++|++++.+|..|.||||.|+..|+.+++++|++. +.+++..          +..|.||||+|+..|+
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T 1wdy_A           82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh-CCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999987 8888877          7889999999999999


Q ss_pred             HHHHHHHHhc-CCCCCcccCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHH
Q 009183          173 ADTIRLLLFR-DASQGRQDKDGCTPLHWAALRGN----VEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL  247 (541)
Q Consensus       173 ~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L  247 (541)
                      .+++++|++. |++++.+|..|.||||+|+..++    .+++++|+++|+  +++.+|..|.|||++|++.|+.+++++|
T Consensus       161 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~L  238 (285)
T 1wdy_A          161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA--DVNVRGERGKTPLILAVEKKHLGLVQRL  238 (285)
T ss_dssp             HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC--CSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCC--CCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999987 99999999999999999999999    999999999998  7788999999999999999999999999


Q ss_pred             HH-hhhhcccccccccccccccCCCCchhHHHHH
Q 009183          248 SN-AQHMHRNHWGDKICGRKTSDIGYAPILFSII  280 (541)
Q Consensus       248 ~~-~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i  280 (541)
                      ++ .+....          .....|.+|+.++..
T Consensus       239 l~~~g~~~~----------~~~~~g~t~l~~A~~  262 (285)
T 1wdy_A          239 LEQEHIEIN----------DTDSDGKTALLLAVE  262 (285)
T ss_dssp             HHSSSCCTT----------CCCTTSCCHHHHHHH
T ss_pred             HhccCCCcc----------ccCCCCCcHHHHHHH
Confidence            98 443221          233457888887764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.1e-38  Score=317.19  Aligned_cols=230  Identities=21%  Similarity=0.285  Sum_probs=215.1

Q ss_pred             CCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHH
Q 009183           19 NQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALH   98 (541)
Q Consensus        19 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~   98 (541)
                      ....+..|.|+||.|+..|+.++++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.  .+|.||||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~   89 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH   89 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence            344677899999999999999999999976 899999999999999999999999999999999996554  47899999


Q ss_pred             HHHHhCCHHHHHHHHhC----CCCCCc-----------------cccCCChHHHHHHHcC--CHHHHHHHHHhcCCCccc
Q 009183           99 WAAVRGSIAVADVLVQN----GARVEA-----------------ADVHGYRAVHVAAQYG--QTSFLNHIVAKYHADYDA  155 (541)
Q Consensus        99 ~A~~~g~~~~v~~Ll~~----g~~~~~-----------------~d~~g~t~l~~A~~~g--~~~~v~~Ll~~~~~~~~~  155 (541)
                      +|+..|+.+++++|++.    |++++.                 +|..|.||||+|+..|  +.+++++|++. |++++.
T Consensus        90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~  168 (364)
T 3ljn_A           90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTA  168 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTC
T ss_pred             HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcc
Confidence            99999999999999999    888877                 8999999999999999  99999999987 999999


Q ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHhcCCC-----CCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCC
Q 009183          156 SDNEGRSPLHWAAYKGFADTIRLLLFRDAS-----QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLT  230 (541)
Q Consensus       156 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t  230 (541)
                      +|..|.||||+|+..|+.+++++|+++|++     ++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.|
T Consensus       169 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--d~~~~d~~g~t  246 (364)
T 3ljn_A          169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI--DVNMEDNEHTV  246 (364)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC--CTTCCCTTSCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCCCCCCCCCC
Confidence            999999999999999999999999999999     99999999999999999999999999999998  77889999999


Q ss_pred             HHHHHHhcCchHHHHHHHHhhhhc
Q 009183          231 PTQLAYDKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       231 ~l~~A~~~~~~~i~~~L~~~~~~~  254 (541)
                      ||++|++.|+.+++++|++++...
T Consensus       247 pL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          247 PLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             HHHHHHHhChHHHHHHHHHcCCch
Confidence            999999999999999999987543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.7e-38  Score=304.16  Aligned_cols=217  Identities=24%  Similarity=0.232  Sum_probs=185.4

Q ss_pred             CCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCC---CccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchH
Q 009183           20 QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGAS---VSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA   96 (541)
Q Consensus        20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~---~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tp   96 (541)
                      ...+..|.||||.|++.|+.++++.|++. +.+   ++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            34678899999999999999999999976 444   88999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCCC-----------------------------------------------CCccccCCChH
Q 009183           97 LHWAAVRGSIAVADVLVQNGAR-----------------------------------------------VEAADVHGYRA  129 (541)
Q Consensus        97 L~~A~~~g~~~~v~~Ll~~g~~-----------------------------------------------~~~~d~~g~t~  129 (541)
                      ||+|+..|+.+++++|+++|++                                               ++.+|..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            9999999999999999998865                                               66778889999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHH
Q 009183          130 VHVAAQYGQTSFLNHIVAKYHADYDASDNE-GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEA  208 (541)
Q Consensus       130 l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~  208 (541)
                      ||+|+..|+.+++++|++. |.+++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus       162 L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~  240 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL  240 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence            9999999999999999976 8889888854 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCcccCCCCCCHHHHHHhcCc
Q 009183          209 CTVLVHAGTKQELTAKDKAGLTPTQLAYDKGH  240 (541)
Q Consensus       209 v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~  240 (541)
                      +++|+++|+  +++.+|..|.||+++|.....
T Consensus       241 v~~Ll~~ga--~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          241 ARLLRAHGA--PEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHHTTC--CCCCCC---------------
T ss_pred             HHHHHHcCC--CcCcCCCcccccccccCCccc
Confidence            999999998  678899999999999887543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-37  Score=319.51  Aligned_cols=229  Identities=28%  Similarity=0.368  Sum_probs=154.0

Q ss_pred             CCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 009183           20 QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHW   99 (541)
Q Consensus        20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~   99 (541)
                      +..+..|.||||.|+..|+.++++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.++.+|.||||+
T Consensus         8 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   86 (437)
T 1n11_A            8 GGGGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC   86 (437)
T ss_dssp             -------CCHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Confidence            34556666777777777777777766654 66667667777777777777777777777777777777777777777777


Q ss_pred             HHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHH
Q 009183          100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL  179 (541)
Q Consensus       100 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  179 (541)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++ +.+.+..+..|.||||+|+..|+.+++++|
T Consensus        87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  165 (437)
T 1n11_A           87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELL  165 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            7777777777777777777777777777777777777777777776665 566666666667777777777777777777


Q ss_pred             HhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          180 LFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       180 l~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      +++|++++..+..|.||||+|+..|+.+++++|+++|+  +++..+..|.|||++|+..|+.+++++|++.+.
T Consensus       166 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  236 (437)
T 1n11_A          166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG--SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG  236 (437)
T ss_dssp             HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC--CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            77777766666667777777777777777777776665  445556666666666666666666666666544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1e-37  Score=292.55  Aligned_cols=218  Identities=23%  Similarity=0.338  Sum_probs=202.8

Q ss_pred             chhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCC--CCCCC-CCCCCchHHHHHHH
Q 009183           26 AVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHG--GDVNA-TDNNGQTALHWAAV  102 (541)
Q Consensus        26 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g--~~~~~-~~~~g~tpL~~A~~  102 (541)
                      |.||||.|++.|+.+.++.+++..+...+.+|.+|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            5799999999999999999999866666778999999999999999999999999999  55555 77899999999999


Q ss_pred             hCCHHHHHHHHhCC--CCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH
Q 009183          103 RGSIAVADVLVQNG--ARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL  180 (541)
Q Consensus       103 ~g~~~~v~~Ll~~g--~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  180 (541)
                      .|+.+++++|+++|  ++++.+|..|.||||.|+..|+.+++++|++. |.+++.+|..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999  89999999999999999999999999999987 9999999999999999999999999999999


Q ss_pred             hcC-CCCCcccCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHH
Q 009183          181 FRD-ASQGRQDKDGCTPLHWAALRGNVEACTVLV-HAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSN  249 (541)
Q Consensus       181 ~~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~  249 (541)
                      +.| ++++.+|..|.||||+|+..|+.+++++|+ ++|+  +++.+|..|+||+++|.+.   +++++|.+
T Consensus       161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga--~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA--EYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC--CSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--CCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            999 999999999999999999999999999999 8898  7888999999999999765   56666654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4e-37  Score=290.58  Aligned_cols=229  Identities=34%  Similarity=0.554  Sum_probs=215.0

Q ss_pred             CCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCC-CCchHHHH
Q 009183           21 NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDN-NGQTALHW   99 (541)
Q Consensus        21 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~-~g~tpL~~   99 (541)
                      ..+..+.++|+.|++.|+.+.++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            4577889999999999999999999976 899999999999999999999999999999999999887654 49999999


Q ss_pred             HHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc-HHHHHH
Q 009183          100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF-ADTIRL  178 (541)
Q Consensus       100 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~-~~~v~~  178 (541)
                      |+..|+.+++++|++.|++++.+|..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..+. .+++++
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~  161 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRL  161 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHHHHHH
Confidence            9999999999999999999999999999999999999999999999987 99999999999999999997776 799999


Q ss_pred             HHhcCCCCCcccC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhh
Q 009183          179 LLFRDASQGRQDK-DGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHM  253 (541)
Q Consensus       179 Ll~~g~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~  253 (541)
                      |++.|++++..+. .|.||||+|+..|+.+++++|+++|+  +++.+|..|.||+++|++.|+.+++++|++.+..
T Consensus       162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA--NVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC--CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            9999999999997 89999999999999999999999998  7788999999999999999999999999988764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.2e-37  Score=300.67  Aligned_cols=229  Identities=17%  Similarity=0.188  Sum_probs=187.1

Q ss_pred             CCCCcchhhHHHHHHcCCHHHHHHHHHhc----------CCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCC
Q 009183           21 NDNQAAVTDVFSASAYGDFEKLRKFVEED----------GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD   90 (541)
Q Consensus        21 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~----------~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~   90 (541)
                      .....+.+++|.|+..|+.+.+..++...          ...++.+|.+|.||||+|+..|+.+++++|+++|++++.++
T Consensus        10 ~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~   89 (285)
T 3d9h_A           10 HSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT   89 (285)
T ss_dssp             --------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC
T ss_pred             ccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            34557899999999999998888876543          23467789999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHh
Q 009183           91 NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK  170 (541)
Q Consensus        91 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  170 (541)
                      .+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +.+++..+ .|.||||+|+..
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~-~g~t~L~~A~~~  167 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQPES-DLASPIHEAARR  167 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCSC-TTSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC-CCCCCCCC-CCCCHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999986 88877544 599999999999


Q ss_pred             CcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHh
Q 009183          171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNA  250 (541)
Q Consensus       171 ~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~  250 (541)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+  +++ .|..|.|||++|++.|+.+++++|++.
T Consensus       168 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~  244 (285)
T 3d9h_A          168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA--DVN-QGKGQDSPLHAVVRTASEELACLLMDF  244 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTC--CTT-CCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCC--CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999998  444 488999999999999999999999998


Q ss_pred             hhhc
Q 009183          251 QHMH  254 (541)
Q Consensus       251 ~~~~  254 (541)
                      +...
T Consensus       245 gad~  248 (285)
T 3d9h_A          245 GADT  248 (285)
T ss_dssp             TCCT
T ss_pred             CCCC
Confidence            7644

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=8.3e-38  Score=305.93  Aligned_cols=223  Identities=28%  Similarity=0.434  Sum_probs=205.3

Q ss_pred             CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 009183           22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA  101 (541)
Q Consensus        22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~  101 (541)
                      .+..+.++|+.|+..|+.+.++.|++. |.+++.+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            455688999999999999999999976 8999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCccc--------------------------
Q 009183          102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA--------------------------  155 (541)
Q Consensus       102 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~--------------------------  155 (541)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.++...+.+++.                          
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence            999999999999999999999999999999999999999999888766665443                          


Q ss_pred             CCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHH
Q 009183          156 SDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA  235 (541)
Q Consensus       156 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A  235 (541)
                      .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.||+++|
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga--d~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC--DMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCTTTSC
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999998  7788999999999999


Q ss_pred             HhcCchHHHHHH
Q 009183          236 YDKGHRQVALYL  247 (541)
Q Consensus       236 ~~~~~~~i~~~L  247 (541)
                      .+.....+.+++
T Consensus       273 ~~~~~~~l~~l~  284 (299)
T 1s70_B          273 DEDILGYLEELQ  284 (299)
T ss_dssp             CSGGGHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            875444444443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.7e-37  Score=306.03  Aligned_cols=229  Identities=26%  Similarity=0.292  Sum_probs=207.4

Q ss_pred             CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCC-CCchHHHHHHHcCcHHHHHHHHhCCCCCC--------------
Q 009183           23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDG-NGYFALQWAALNNFADIAQYIIDHGGDVN--------------   87 (541)
Q Consensus        23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~--------------   87 (541)
                      +..+.++|+.|+++|++++|+.||+. |+++|.++. .|.||||+|+..|+.++|++|+++|++++              
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            34578999999999999999999976 999998876 49999999999999999999999988654              


Q ss_pred             -------------------CCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCcc----------ccCCChHHHHHHHcCC
Q 009183           88 -------------------ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAA----------DVHGYRAVHVAAQYGQ  138 (541)
Q Consensus        88 -------------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~----------d~~g~t~l~~A~~~g~  138 (541)
                                         ..+..|.||||+|+..|+.+++++|+++|++++.+          +..|.||||+|++.|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~  180 (337)
T 4g8k_A          101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  180 (337)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred             hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC
Confidence                               45667899999999999999999999999988754          4468999999999999


Q ss_pred             HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc----HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHH
Q 009183          139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF----ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVH  214 (541)
Q Consensus       139 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  214 (541)
                      .+++++|+++.|++++.+|..|.|++|.++..+.    ..++++|+++|++++.+|..|.||||+|+..|+.++++.|++
T Consensus       181 ~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~  260 (337)
T 4g8k_A          181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  260 (337)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            9999999988899999999999999999876554    468899999999999999999999999999999999999998


Q ss_pred             c-CCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183          215 A-GTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       215 ~-g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~  254 (541)
                      . |+  +++.+|.+|+||||+|++.|+.+++++|++++...
T Consensus       261 ~~~~--~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          261 QEHI--EINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  299 (337)
T ss_dssp             STTC--CTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred             hcCC--cccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            6 55  78899999999999999999999999999987644

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5e-37  Score=307.11  Aligned_cols=242  Identities=24%  Similarity=0.331  Sum_probs=216.9

Q ss_pred             CceEEeecccc-CCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC
Q 009183            4 SEIEVVSSTEA-IPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH   82 (541)
Q Consensus         4 ~~~~~~~~l~~-~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~   82 (541)
                      ++.+.++.+.. .+.+....+..|.||||.|+..|+.++++.|++. |.+++.+|.+|.||||+|+..|+.+++++|+++
T Consensus        35 g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  113 (351)
T 3utm_A           35 GNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKH  113 (351)
T ss_dssp             TCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHC
Confidence            34444444443 4556667788899999999999999999999976 899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccc---------------------------------------
Q 009183           83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD---------------------------------------  123 (541)
Q Consensus        83 g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d---------------------------------------  123 (541)
                      |++++..+..|.||||+|+..|+.+++++|+++|++++..+                                       
T Consensus       114 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (351)
T 3utm_A          114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAK  193 (351)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHH
Confidence            99999999999999999999999999999999999987654                                       


Q ss_pred             ---------------cCCChHHHHHHHc---CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 009183          124 ---------------VHGYRAVHVAAQY---GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS  185 (541)
Q Consensus       124 ---------------~~g~t~l~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  185 (541)
                                     ..|.||||.|+..   +..+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       194 ~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  272 (351)
T 3utm_A          194 VKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK  272 (351)
T ss_dssp             HHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence                           4567999999998   447899999876 999999999999999999999999999999999999


Q ss_pred             CCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhh
Q 009183          186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHM  253 (541)
Q Consensus       186 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~  253 (541)
                      ++.+|..|+||||+|+..|+.+++++|+++|+  +++.+|..|.||+++|    +.+++++|.+....
T Consensus       273 ~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga--d~~~~~~~g~tal~~a----~~~~~~~l~~~~~~  334 (351)
T 3utm_A          273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGS--DPSIISLQGFTAAQMG----NEAVQQILSESTPM  334 (351)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC--CCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence            99999999999999999999999999999998  7788999999999998    66788888876543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.1e-37  Score=286.34  Aligned_cols=212  Identities=29%  Similarity=0.389  Sum_probs=135.6

Q ss_pred             CCHHHHHHHHHhcCCCCccC-CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC
Q 009183           37 GDFEKLRKFVEEDGASVSRP-DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN  115 (541)
Q Consensus        37 g~~~~v~~ll~~~~~~~~~~-d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  115 (541)
                      |+.++++.|++. +.+++.. |.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++
T Consensus         2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            444555555543 4444433 56666666666666666666666666666666666666666666666666666666666


Q ss_pred             CC-CCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCC
Q 009183          116 GA-RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGC  194 (541)
Q Consensus       116 g~-~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  194 (541)
                      ++ +++.++..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  159 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE  159 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCc
Confidence            65 5666666666666666666666666666654 666666666666666666666666666666666666666666666


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          195 TPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       195 tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      ||||+|+..|+.+++++|+++|+  +++.+|..|.||+++|++.++.+++++|++.+.
T Consensus       160 t~L~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          160 TPLFLAAREGSYETAKVLLDHFA--NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC--CCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            66666666666666666666665  455566666666666666666666666666554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=4.6e-36  Score=298.87  Aligned_cols=244  Identities=20%  Similarity=0.213  Sum_probs=214.3

Q ss_pred             CCceEEeeccccCCCCCCCCC-CcchhhHHHHHHcCCHHHHHHHHHhcCC------------------------------
Q 009183            3 SSEIEVVSSTEAIPNENQNDN-QAAVTDVFSASAYGDFEKLRKFVEEDGA------------------------------   51 (541)
Q Consensus         3 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~L~~A~~~g~~~~v~~ll~~~~~------------------------------   51 (541)
                      .+++++++.|.+.+.+.+..+ ..|.||||.|++.|+.++++.|++. |+                              
T Consensus        35 ~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (337)
T 4g8k_A           35 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFILAAIAGSVKLLKLFLS  113 (337)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhhccCCCchhHHHHhcccchhhHHhhh
Confidence            567888888888777666554 4589999999999999999999875 43                              


Q ss_pred             ---CCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCC----------CCCCchHHHHHHHhCCHHHHHHHHh-CCC
Q 009183           52 ---SVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT----------DNNGQTALHWAAVRGSIAVADVLVQ-NGA  117 (541)
Q Consensus        52 ---~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~----------~~~g~tpL~~A~~~g~~~~v~~Ll~-~g~  117 (541)
                         +++..|..|.||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+++++|++ .|+
T Consensus       114 ~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ga  193 (337)
T 4g8k_A          114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA  193 (337)
T ss_dssp             TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCC
T ss_pred             ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCC
Confidence               45677888999999999999999999999999988754          3458999999999999999999996 699


Q ss_pred             CCCccccCCChHHHHHHHcCC----HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhc-CCCCCcccCC
Q 009183          118 RVEAADVHGYRAVHVAAQYGQ----TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR-DASQGRQDKD  192 (541)
Q Consensus       118 ~~~~~d~~g~t~l~~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~  192 (541)
                      +++.+|..|.|+++.++..++    ..++++|++. |++++.+|..|.||||+|+..|+.++++.|++. |++++.+|.+
T Consensus       194 d~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~  272 (337)
T 4g8k_A          194 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD  272 (337)
T ss_dssp             CTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT
T ss_pred             CcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC
Confidence            999999999999999887554    2467777765 999999999999999999999999999999975 8999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcc
Q 009183          193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHR  255 (541)
Q Consensus       193 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~  255 (541)
                      |+||||+|+..|+.++|++|+++|+  +++     +.+||++|+++|+.+++++|+++++..+
T Consensus       273 G~TpL~~A~~~g~~~iv~~Ll~~GA--d~n-----~~~~L~~A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          273 GKTALLLAVELKLKKIAELLCKRGA--STD-----CGDLVMTARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHTTSC--SST-----TCCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCC--CCC-----CCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence            9999999999999999999999998  443     4569999999999999999999987654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.3e-35  Score=275.63  Aligned_cols=213  Identities=23%  Similarity=0.219  Sum_probs=200.1

Q ss_pred             CceEEeeccccCCCCCCCC-CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC
Q 009183            4 SEIEVVSSTEAIPNENQND-NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH   82 (541)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~-~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~   82 (541)
                      ++.++++.+.+...+.... +..+.||||.|++.|+.+.++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            5678888888776666554 78899999999999999999999976 899999999999999999999999999999999


Q ss_pred             CC-CCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC
Q 009183           83 GG-DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGR  161 (541)
Q Consensus        83 g~-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  161 (541)
                      ++ +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~  159 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREE  159 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCc
Confidence            87 8899999999999999999999999999999999999999999999999999999999999987 999999999999


Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183          162 SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK  218 (541)
Q Consensus       162 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  218 (541)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+.
T Consensus       160 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999999999999984

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.3e-36  Score=287.23  Aligned_cols=218  Identities=24%  Similarity=0.294  Sum_probs=167.3

Q ss_pred             CCccCCCCCchHHHHHHHcC-------------cHHHHHHHHhCCCCCCCC-CCCCchHHHHHHHhCCHHHHHHHHhCCC
Q 009183           52 SVSRPDGNGYFALQWAALNN-------------FADIAQYIIDHGGDVNAT-DNNGQTALHWAAVRGSIAVADVLVQNGA  117 (541)
Q Consensus        52 ~~~~~d~~g~t~Lh~A~~~~-------------~~~iv~~Ll~~g~~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~g~  117 (541)
                      ++|.+|.+|.||||+|+..|             +.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++|+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   81 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA   81 (253)
T ss_dssp             --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            68899999999999999977             899999999999998654 7899999999999999999999999999


Q ss_pred             CCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHH
Q 009183          118 RVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL  197 (541)
Q Consensus       118 ~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL  197 (541)
                      +++.+|..|.||||+|+..|+.+++++|++....+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L  161 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL  161 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            99999999999999999999999999999885568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHH
Q 009183          198 HWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILF  277 (541)
Q Consensus       198 h~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~  277 (541)
                      |+|+..|+.+++++|+++|+  +++.+|..|.|||++|++.|+.+++++|++.+....          .....|.+|+.+
T Consensus       162 ~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----------~~d~~g~tpl~~  229 (253)
T 1yyh_A          162 HWAAAVNNVDAAVVLLKNGA--NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD----------ITDHMDRLPRDI  229 (253)
T ss_dssp             HHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTCCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc----------ccccCCCCHHHH
Confidence            99999999999999999998  778899999999999999999999999999876543          234457888888


Q ss_pred             HHHH
Q 009183          278 SIII  281 (541)
Q Consensus       278 ~~i~  281 (541)
                      +...
T Consensus       230 A~~~  233 (253)
T 1yyh_A          230 AQER  233 (253)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            7643

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.3e-36  Score=290.26  Aligned_cols=200  Identities=25%  Similarity=0.331  Sum_probs=188.1

Q ss_pred             CccCCCCCchHHHHHHHcCcHHHHHHHHhCCCC---CCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChH
Q 009183           53 VSRPDGNGYFALQWAALNNFADIAQYIIDHGGD---VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRA  129 (541)
Q Consensus        53 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~  129 (541)
                      ++.+|.+|.||||+|+..|+.+++++|+++|++   ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            467899999999999999999999999999998   78899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCC-----------------------------------------------CcccCCCCCCc
Q 009183          130 VHVAAQYGQTSFLNHIVAKYHA-----------------------------------------------DYDASDNEGRS  162 (541)
Q Consensus       130 l~~A~~~g~~~~v~~Ll~~~~~-----------------------------------------------~~~~~d~~g~t  162 (541)
                      ||+|+..|+.+++++|++. +.                                               +++.+|..|.|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSS-CCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            9999999999999999975 32                                               36778899999


Q ss_pred             HHHHHHHhCcHHHHHHHHhcCCCCCcccCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCch
Q 009183          163 PLHWAAYKGFADTIRLLLFRDASQGRQDKD-GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHR  241 (541)
Q Consensus       163 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~  241 (541)
                      |||+|+..|+.+++++|+++|++++.++.. |.||||+|+..|+.+++++|+++|+  +++.+|..|.|||++|++.|+.
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga--d~~~~d~~g~tpL~~A~~~~~~  238 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA--DPTARMYGGRTPLGSALLRPNP  238 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHTSSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC--CCcccccCCCCHHHHHHHcCCc
Confidence            999999999999999999999999999865 9999999999999999999999998  7888999999999999999999


Q ss_pred             HHHHHHHHhhhhcc
Q 009183          242 QVALYLSNAQHMHR  255 (541)
Q Consensus       242 ~i~~~L~~~~~~~~  255 (541)
                      +++++|++++....
T Consensus       239 ~~v~~Ll~~ga~~~  252 (282)
T 1oy3_D          239 ILARLLRAHGAPEP  252 (282)
T ss_dssp             HHHHHHHHTTCCCC
T ss_pred             HHHHHHHHcCCCcC
Confidence            99999999887654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.8e-35  Score=277.81  Aligned_cols=217  Identities=22%  Similarity=0.363  Sum_probs=202.1

Q ss_pred             CCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHH
Q 009183           51 ASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAV  130 (541)
Q Consensus        51 ~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l  130 (541)
                      .+++.+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL   81 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHH
Q 009183          131 HVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT  210 (541)
Q Consensus       131 ~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~  210 (541)
                      |+|+..|+.+++++|++..+.+++..|..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  161 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE  161 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence            99999999999999998855899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHH
Q 009183          211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSI  279 (541)
Q Consensus       211 ~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~  279 (541)
                      +|+++|+  +++.+|..|.|||++|++.|+.+++++|++++....          .....|.+|+.++.
T Consensus       162 ~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----------~~d~~g~t~l~~A~  218 (237)
T 3b7b_A          162 ILLAAKC--DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT----------LKNKEGETPLQCAS  218 (237)
T ss_dssp             HHHTTTC--CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT----------CCCTTSCCHHHHSC
T ss_pred             HHHHcCC--CCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC----------ccCCCCCCHHHHHH
Confidence            9999998  778899999999999999999999999998876543          12345677776654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.7e-36  Score=294.39  Aligned_cols=223  Identities=17%  Similarity=0.137  Sum_probs=200.5

Q ss_pred             CCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHH
Q 009183           18 ENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTAL   97 (541)
Q Consensus        18 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL   97 (541)
                      ..+..+..|.||||.|+..|+.+.++.|++. |.+++.+  +|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L   99 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL   99 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH
Confidence            3566788899999999999999999999876 8888877  489999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhCCCCCCccccCC-ChHHHHHHHcCCHHHHHHHHHhcCCCcccCCC-CCCcHHHHHHHhCcHHH
Q 009183           98 HWAAVRGSIAVADVLVQNGARVEAADVHG-YRAVHVAAQYGQTSFLNHIVAKYHADYDASDN-EGRSPLHWAAYKGFADT  175 (541)
Q Consensus        98 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g-~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~L~~A~~~~~~~~  175 (541)
                      |+|+..|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|++. +.+.  .+. .|.||||+|+..|+.++
T Consensus       100 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~~--~~~~~g~t~L~~A~~~g~~~~  176 (285)
T 3kea_A          100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPST--FDLAILLSCIHITIKNGHVDM  176 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCTT--CCCSTHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCcc--ccccCCccHHHHHHHcChHHH
Confidence            99999999999999999999999999999 7999999999999999999976 5544  333 78999999999999999


Q ss_pred             HHHHHhcCCCCCcccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183          176 IRLLLFRDASQGRQDKDGCTP-LHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       176 v~~Ll~~g~~~~~~d~~g~tp-Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~  254 (541)
                      +++|+++|++++.+|..|.|| ||+|+..|+.+++++|+++|+  +++.+|.       .|+..|+.+++++|++++...
T Consensus       177 v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga--d~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~  247 (285)
T 3kea_A          177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI--NIYSANL-------ENVLLDDAEIAKMIIEKHVEY  247 (285)
T ss_dssp             HHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB--CSTTTTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC--CCCCCCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence            999999999999999999998 999999999999999999998  5666663       567789999999999988765


Q ss_pred             c
Q 009183          255 R  255 (541)
Q Consensus       255 ~  255 (541)
                      .
T Consensus       248 ~  248 (285)
T 3kea_A          248 K  248 (285)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.8e-36  Score=304.45  Aligned_cols=244  Identities=22%  Similarity=0.246  Sum_probs=213.4

Q ss_pred             CCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCC-CCCchHHHHHHHcCcHHHHHHHH--------hCCCCCCCCCC
Q 009183           21 NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPD-GNGYFALQWAALNNFADIAQYII--------DHGGDVNATDN   91 (541)
Q Consensus        21 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~iv~~Ll--------~~g~~~~~~~~   91 (541)
                      ..+..+.++||.|+..+. ++++.++   ..+++.+| ..|.||||+|+..|+.+++++|+        ++|++++.+|.
T Consensus        89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~---~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~  164 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGSY-AITEPIT---RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC  164 (373)
T ss_dssp             -----CCCHHHHHHHSSS-CCCSCCS---TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred             CCCCCCccHHHHHhcCCc-hHHHHhc---cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence            456778999999999664 6666654   35788888 79999999999999998887776        89999999999


Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcC--CCcccCCCCCCcHHHHHHH
Q 009183           92 NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH--ADYDASDNEGRSPLHWAAY  169 (541)
Q Consensus        92 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~--~~~~~~d~~g~t~L~~A~~  169 (541)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++...  .+++..|..|.||||+|+.
T Consensus       165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~  244 (373)
T 2fo1_E          165 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH  244 (373)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999997521  6889999999999999999


Q ss_pred             hC---cHHHHHHHHhcCCCCCc--------ccCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcccCCCCCCHHHHHHh
Q 009183          170 KG---FADTIRLLLFRDASQGR--------QDKDGCTPLHWAALRGNVEACTVLVHAG-TKQELTAKDKAGLTPTQLAYD  237 (541)
Q Consensus       170 ~~---~~~~v~~Ll~~g~~~~~--------~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-~~~~~~~~d~~g~t~l~~A~~  237 (541)
                      .+   +.+++++|+++|++++.        .|..|.||||+|+..|+.+++++|++++ +  +++.+|..|.|||++|++
T Consensus       245 ~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~n~~d~~g~TpL~~A~~  322 (373)
T 2fo1_E          245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS--NKDKQDEDGKTPIMLAAQ  322 (373)
T ss_dssp             SCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC--CTTCCCTTCCCHHHHHHH
T ss_pred             hCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC--CccCcCCCCCCHHHHHHH
Confidence            98   89999999999999986        5678999999999999999999999886 5  788899999999999999


Q ss_pred             cCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHHH
Q 009183          238 KGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSII  280 (541)
Q Consensus       238 ~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i  280 (541)
                      .|+.+++++|++++....          .....|.+|+.++..
T Consensus       323 ~g~~~iv~~Ll~~gad~~----------~~d~~g~t~l~~A~~  355 (373)
T 2fo1_E          323 EGRIEVVMYLIQQGASVE----------AVDATDHTARQLAQA  355 (373)
T ss_dssp             HTCHHHHHHHHHTTCCSS----------CCCSSSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcc----------CCCCCCCCHHHHHHH
Confidence            999999999999876543          123457788877764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.6e-34  Score=273.17  Aligned_cols=200  Identities=25%  Similarity=0.331  Sum_probs=185.7

Q ss_pred             CccCCCCCchHHHHHHHcCcHHHHHHHHh----CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCh
Q 009183           53 VSRPDGNGYFALQWAALNNFADIAQYIID----HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYR  128 (541)
Q Consensus        53 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~----~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t  128 (541)
                      ++.+|.+|.||||+|+..|+.+++++|++    .|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t   81 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   81 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence            35678999999999999999999999997    79999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcC---CCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCccc-CCCCcHHHHHHHcC
Q 009183          129 AVHVAAQYGQTSFLNHIVAKYH---ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD-KDGCTPLHWAALRG  204 (541)
Q Consensus       129 ~l~~A~~~g~~~~v~~Ll~~~~---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~tpLh~A~~~g  204 (541)
                      |||+|+..|+.+++++|++...   .+++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence            9999999999999999998732   2888899999999999999999999999999999999999 78999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183          205 NVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       205 ~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~  254 (541)
                      +.+++++|+++|+  +++.+|..|.|||++|++.|+.+++++|++.+...
T Consensus       162 ~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  209 (241)
T 1k1a_A          162 SLSMVQLLLQHGA--NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS  209 (241)
T ss_dssp             CHHHHHHHHHTTC--CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            9999999999998  77889999999999999999999999999987654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.4e-34  Score=265.71  Aligned_cols=193  Identities=22%  Similarity=0.301  Sum_probs=146.1

Q ss_pred             CcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh
Q 009183           24 QAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR  103 (541)
Q Consensus        24 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~  103 (541)
                      ..+.++|+.|+..|+.+.++.++++.+.+++.+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            34567777777777777777777776667777777777777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHH-hCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc-----HHHHH
Q 009183          104 GSIAVADVLV-QNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF-----ADTIR  177 (541)
Q Consensus       104 g~~~~v~~Ll-~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~-----~~~v~  177 (541)
                      |+.+++++|+ +.+++++.+|..|.||||.|+..|+.+++++|++..+.+++.+|..|.||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            7777777777 45567777777777777777777777777777776437777777777777777777776     77777


Q ss_pred             HHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183          178 LLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       178 ~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  216 (541)
                      +|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            777777777777777777777777777777777777665

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.5e-35  Score=287.80  Aligned_cols=215  Identities=17%  Similarity=0.128  Sum_probs=200.1

Q ss_pred             HHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHH
Q 009183           33 ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVL  112 (541)
Q Consensus        33 A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  112 (541)
                      +++..+.+.++++|.+.  +++.+|.+|.||||+|+..|+.+++++|+++|++++..  +|.||||+|+..|+.+++++|
T Consensus         6 ~i~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             TGGGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHH
Confidence            46678888999999874  68999999999999999999999999999999999988  489999999999999999999


Q ss_pred             HhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCC-CcHHHHHHHhCcHHHHHHHHhcCCCCCcccC
Q 009183          113 VQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEG-RSPLHWAAYKGFADTIRLLLFRDASQGRQDK  191 (541)
Q Consensus       113 l~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~  191 (541)
                      +++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..| .||||+|+..|+.+++++|+++|++.... .
T Consensus        82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~  159 (285)
T 3kea_A           82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-A  159 (285)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-S
T ss_pred             HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-c
Confidence            999999999999999999999999999999999987 99999999999 89999999999999999999999877433 2


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCH-HHHHHhcCchHHHHHHHHhhhhcc
Q 009183          192 DGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTP-TQLAYDKGHRQVALYLSNAQHMHR  255 (541)
Q Consensus       192 ~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~-l~~A~~~~~~~i~~~L~~~~~~~~  255 (541)
                      .|.||||+|+..|+.+++++|+++|+  +++.+|..|.|| |++|++.|+.+++++|++++....
T Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~ga--d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~  222 (285)
T 3kea_A          160 ILLSCIHITIKNGHVDMMILLLDYMT--STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY  222 (285)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHH--HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST
T ss_pred             CCccHHHHHHHcChHHHHHHHHHcCC--CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            79999999999999999999999998  788899999998 999999999999999999876543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.8e-36  Score=285.86  Aligned_cols=218  Identities=21%  Similarity=0.208  Sum_probs=189.1

Q ss_pred             CCCCCcchhhHHHHHHcCCHHHHHHHHHhcC---CCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchH
Q 009183           20 QNDNQAAVTDVFSASAYGDFEKLRKFVEEDG---ASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTA   96 (541)
Q Consensus        20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~---~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tp   96 (541)
                      +..+..|.||||.|+..|+.+.++.|++...   .+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   81 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            3467788999999999999999988887533   4789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCCC------CCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCC-CCCcHHHHHHH
Q 009183           97 LHWAAVRGSIAVADVLVQNGAR------VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN-EGRSPLHWAAY  169 (541)
Q Consensus        97 L~~A~~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~L~~A~~  169 (541)
                      ||+|+..|+.+++++|++.|++      ++.++..|.||||+|+..|+.+++++|++. |++++.++. .|.||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999999876      466788899999999999999999999976 899999987 89999999999


Q ss_pred             hCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhc
Q 009183          170 KGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK  238 (541)
Q Consensus       170 ~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~  238 (541)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++......+.+|.||.+.+.+.
T Consensus       161 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             TTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             cCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            999999999999999999999999999999999999999999999999766667888898887765543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=5.4e-36  Score=301.69  Aligned_cols=245  Identities=19%  Similarity=0.215  Sum_probs=219.7

Q ss_pred             CceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC-
Q 009183            4 SEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH-   82 (541)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-   82 (541)
                      +++++++.+.+...+.+..+..|.||||.|+..|+.++++.|++. +.+++  +.+|.||||+|+..|+.+++++|+++ 
T Consensus        31 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~  107 (364)
T 3ljn_A           31 GQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEVHS--LWHGQKPIHLAVMANKTDLVVALVEGA  107 (364)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCC--CBTTBCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCcc--ccCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            567778888888888888899999999999999999999999987 55444  35899999999999999999999998 


Q ss_pred             ---CCCCCC-----------------CCCCCchHHHHHHHhC--CHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHH
Q 009183           83 ---GGDVNA-----------------TDNNGQTALHWAAVRG--SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS  140 (541)
Q Consensus        83 ---g~~~~~-----------------~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~  140 (541)
                         |++++.                 .+..|.||||+|+..|  +.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~  187 (364)
T 3ljn_A          108 KERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE  187 (364)
T ss_dssp             HHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence               887766                 7788999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC-----cccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 009183          141 FLNHIVAKYHAD-----YDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA  215 (541)
Q Consensus       141 ~v~~Ll~~~~~~-----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  215 (541)
                      ++++|++. +.+     ++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       188 ~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  266 (364)
T 3ljn_A          188 ALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK  266 (364)
T ss_dssp             HHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHhc-ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence            99999986 666     999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC----------CcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          216 GTKQE----------LTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       216 g~~~~----------~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      |++.+          ....+..+.||++.|+..|+.+.+..|++.+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~  313 (364)
T 3ljn_A          267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL  313 (364)
T ss_dssp             SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred             CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence            86421          12256788999999999997777766665543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.1e-34  Score=272.90  Aligned_cols=193  Identities=20%  Similarity=0.243  Sum_probs=145.3

Q ss_pred             CCceEEeeccccC-CCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCC-----ccCCCCCchHHHHHHHcCcHHHH
Q 009183            3 SSEIEVVSSTEAI-PNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASV-----SRPDGNGYFALQWAALNNFADIA   76 (541)
Q Consensus         3 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-----~~~d~~g~t~Lh~A~~~~~~~iv   76 (541)
                      .++.++++.+.+. +.+....+..|.||||.|+..|+.++++.|++. +.++     +.+|.+|.||||+|+..|+.+++
T Consensus        13 ~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v   91 (232)
T 2rfa_A           13 ENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELYEGQTALHIAVINQNVNLV   91 (232)
T ss_dssp             TTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CchhccccccccCCCCcCHHHHHHHcCCHHHH
Confidence            3566777777776 777777889999999999999999999999986 5554     67788999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccC
Q 009183           77 QYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS  156 (541)
Q Consensus        77 ~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~  156 (541)
                      ++|+++|++++..+.....                    ....+..|..|.||||+|+..|+.+++++|++. |++++.+
T Consensus        92 ~~Ll~~g~~~~~~~~~~~~--------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~  150 (232)
T 2rfa_A           92 RALLARGASVSARATGSVF--------------------HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQ  150 (232)
T ss_dssp             HHHHHTTCCTTCCCCSGGG--------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred             HHHHhCCCCCCcccCCcce--------------------eecccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC
Confidence            9999999999987653110                    112334455566666666666666666666654 6666666


Q ss_pred             CCCCCcHHHHHHHhCcHHHH----HHHHhcCCCC------CcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183          157 DNEGRSPLHWAAYKGFADTI----RLLLFRDASQ------GRQDKDGCTPLHWAALRGNVEACTVLVHAGT  217 (541)
Q Consensus       157 d~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~------~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  217 (541)
                      |..|.||||+|+..|+.+++    ++|+++|++.      +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       151 d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~  221 (232)
T 2rfa_A          151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK  221 (232)
T ss_dssp             CTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            66666666666666666555    7777777776      4777788888888888888888888888875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=5.4e-34  Score=261.77  Aligned_cols=192  Identities=24%  Similarity=0.260  Sum_probs=184.0

Q ss_pred             CCCchHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHc
Q 009183           58 GNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY  136 (541)
Q Consensus        58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~  136 (541)
                      ..+.||||.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            468899999999999999999998876 9999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcC-CCCCcccCCCCcHHHHHHHcCC-----HHHHH
Q 009183          137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD-ASQGRQDKDGCTPLHWAALRGN-----VEACT  210 (541)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpLh~A~~~g~-----~~~v~  210 (541)
                      |+.+++++|++..+.+++..|..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            99999999998878999999999999999999999999999999999 9999999999999999999998     99999


Q ss_pred             HHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183          211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ  251 (541)
Q Consensus       211 ~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~  251 (541)
                      +|+++|+  +++.+|..|.||+++|++.|+.+++++|++++
T Consensus       163 ~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          163 LLMENGA--DQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHCCC--CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999998  77889999999999999999999999998753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.6e-34  Score=270.01  Aligned_cols=212  Identities=24%  Similarity=0.300  Sum_probs=196.7

Q ss_pred             CceEEeeccccC-CCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC
Q 009183            4 SEIEVVSSTEAI-PNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH   82 (541)
Q Consensus         4 ~~~~~~~~l~~~-~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~   82 (541)
                      +++++++.+.+. +......+..+.||||.|+..|+.++++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++
T Consensus        17 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   95 (231)
T 3aji_A           17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK   95 (231)
T ss_dssp             TCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHc
Confidence            344555544433 334556688899999999999999999999876 899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCc
Q 009183           83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRS  162 (541)
Q Consensus        83 g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  162 (541)
                      |++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+.+++++|++. +.+++.+|..|.|
T Consensus        96 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t  174 (231)
T 3aji_A           96 GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNT  174 (231)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999986 9999999999999


Q ss_pred             HHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183          163 PLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT  217 (541)
Q Consensus       163 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  217 (541)
                      |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus       175 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            9999999999999999999999999999999999999999999999999999876

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-35  Score=281.82  Aligned_cols=214  Identities=21%  Similarity=0.279  Sum_probs=163.8

Q ss_pred             CCceEEeeccccCCCC--------CCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHH
Q 009183            3 SSEIEVVSSTEAIPNE--------NQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFAD   74 (541)
Q Consensus         3 ~~~~~~~~~l~~~~~~--------~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~   74 (541)
                      .++.++++.|.+....        ....+..+.+||+.|+..++.+.+..++.+.|+++|.+|.+|.||||+|+..|+.+
T Consensus        21 ~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~  100 (269)
T 4b93_B           21 DGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRAD  100 (269)
T ss_dssp             TTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTT
T ss_pred             cCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            3566667766654432        33456678899999999988775555555669999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcc
Q 009183           75 IAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYD  154 (541)
Q Consensus        75 iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~  154 (541)
                      ++++|+++|++++..+.+|.||+|+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++
T Consensus       101 ~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-gadvn  179 (269)
T 4b93_B          101 LIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH-GASIN  179 (269)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT-TCCTT
T ss_pred             HHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999986 99999


Q ss_pred             cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCC-HHHHHHHHHcCC
Q 009183          155 ASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGN-VEACTVLVHAGT  217 (541)
Q Consensus       155 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~-~~~v~~Ll~~g~  217 (541)
                      .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+++ .++++.|...++
T Consensus       180 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~  243 (269)
T 4b93_B          180 ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA  243 (269)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence            999999999999999999999999999999999999999999999998775 344444444443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=5.5e-35  Score=275.68  Aligned_cols=199  Identities=22%  Similarity=0.311  Sum_probs=181.5

Q ss_pred             ccCCCCCchHHHHHHHcCcHHHHHHHHhCCC----CCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChH
Q 009183           54 SRPDGNGYFALQWAALNNFADIAQYIIDHGG----DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRA  129 (541)
Q Consensus        54 ~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~----~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~  129 (541)
                      +.+|.+|.||||+|+..|+.++++.|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   81 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            4578899999999999999999999998765    789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCC------cccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccC-CCCcHHHHHHH
Q 009183          130 VHVAAQYGQTSFLNHIVAKYHAD------YDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDK-DGCTPLHWAAL  202 (541)
Q Consensus       130 l~~A~~~g~~~~v~~Ll~~~~~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~tpLh~A~~  202 (541)
                      ||+|+..|+.+++++|++. +.+      ++..|..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQS-CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHS-TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhc-ccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999986 433      577888999999999999999999999999999999998 89999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcc
Q 009183          203 RGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHR  255 (541)
Q Consensus       203 ~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~  255 (541)
                      .|+.+++++|+++|+  +++.+|..|.||+++|+..|+.+++++|++++....
T Consensus       161 ~~~~~~v~~Ll~~ga--~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGA--DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             TTCHHHHHHHHTTTC--CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             cCCHHHHHHHHHcCC--CCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            999999999999998  778899999999999999999999999999887654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.6e-33  Score=262.57  Aligned_cols=192  Identities=23%  Similarity=0.336  Sum_probs=178.7

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhCCCCCCC-CCCCCchHHHHHHHhCCHHHHHHHHhCC--CCCCc-cccCCChHHHHHHH
Q 009183           60 GYFALQWAALNNFADIAQYIIDHGGDVNA-TDNNGQTALHWAAVRGSIAVADVLVQNG--ARVEA-ADVHGYRAVHVAAQ  135 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g--~~~~~-~d~~g~t~l~~A~~  135 (541)
                      |.||||+|+..|+.++++.|++.++++.. .+..|.||||+|+..|+.+++++|+++|  .+++. +|..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            78999999999999999999999987655 7889999999999999999999999999  55555 78899999999999


Q ss_pred             cCCHHHHHHHHHhcC--CCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009183          136 YGQTSFLNHIVAKYH--ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV  213 (541)
Q Consensus       136 ~g~~~~v~~Ll~~~~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  213 (541)
                      .|+.+++++|++. +  .+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           82 VGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HCCHHHHHHHHSS-SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhC-CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999986 5  889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcC-CCCCCcccCCCCCCHHHHHHhcCchHHHHHHH-Hhhhhc
Q 009183          214 HAG-TKQELTAKDKAGLTPTQLAYDKGHRQVALYLS-NAQHMH  254 (541)
Q Consensus       214 ~~g-~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~-~~~~~~  254 (541)
                      ++| +  +++.+|..|.|||++|++.|+.+++++|+ +.+...
T Consensus       161 ~~g~~--~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~  201 (228)
T 2dzn_A          161 GLGKS--AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY  201 (228)
T ss_dssp             TTTCC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS
T ss_pred             hcCcc--cccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC
Confidence            999 5  78889999999999999999999999999 666543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.1e-34  Score=278.06  Aligned_cols=201  Identities=24%  Similarity=0.297  Sum_probs=140.8

Q ss_pred             CCCCCCCCcchhhHHHHHHcCCHHHHHHHHH---hcCCCCc----cCCCCCchHHHHHHHc---CcHHHHHHHHhCCCCC
Q 009183           17 NENQNDNQAAVTDVFSASAYGDFEKLRKFVE---EDGASVS----RPDGNGYFALQWAALN---NFADIAQYIIDHGGDV   86 (541)
Q Consensus        17 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~---~~~~~~~----~~d~~g~t~Lh~A~~~---~~~~iv~~Ll~~g~~~   86 (541)
                      ...+..+..+.++||.|++.|+.+.++.|++   +.+.+++    ..|..|.||||+|+..   |+.+++++|+++|+++
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~   83 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT   83 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence            3445577888999999999999999888887   3566665    4578899999999986   8999999999987652


Q ss_pred             -------CC----CCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCcccc--------------CCChHHHHHHHcCCHHH
Q 009183           87 -------NA----TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV--------------HGYRAVHVAAQYGQTSF  141 (541)
Q Consensus        87 -------~~----~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~--------------~g~t~l~~A~~~g~~~~  141 (541)
                             +.    .+..|.||||+|+..|+.+++++|+++|++++.++.              .|.||||+|+..|+.++
T Consensus        84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A           84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence                   22    456789999999999999999999999999988887              46666666666666666


Q ss_pred             HHHHHHh--cCCCcccCCCCCCcHHHHHHHhCc---------HHHHHHHHhcCCCCC-------cccCCCCcHHHHHHHc
Q 009183          142 LNHIVAK--YHADYDASDNEGRSPLHWAAYKGF---------ADTIRLLLFRDASQG-------RQDKDGCTPLHWAALR  203 (541)
Q Consensus       142 v~~Ll~~--~~~~~~~~d~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~-------~~d~~g~tpLh~A~~~  203 (541)
                      +++|++.  .|++++.+|..|.||||+|+..|+         .+++++|+++|++++       .+|..|.||||+|+..
T Consensus       164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence            6666652  356666666666666666666555         556666666666554       2555666666666666


Q ss_pred             CCHHHHHHHHHcCC
Q 009183          204 GNVEACTVLVHAGT  217 (541)
Q Consensus       204 g~~~~v~~Ll~~g~  217 (541)
                      |+.+++++|+++|+
T Consensus       244 g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          244 GKIGVLAYILQREI  257 (273)
T ss_dssp             TCHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHCCC
Confidence            66666666666665

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.1e-33  Score=248.38  Aligned_cols=156  Identities=38%  Similarity=0.552  Sum_probs=119.1

Q ss_pred             hHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHH
Q 009183           62 FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSF  141 (541)
Q Consensus        62 t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~  141 (541)
                      ++|+.||..|+.++|+.|+++|+++|.+|.+|.||||+|+..++.++++.|+++|++++.+|..|.||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            35777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183          142 LNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK  218 (541)
Q Consensus       142 v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  218 (541)
                      +++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|++
T Consensus        86 v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           86 VKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            7777765 777777777777777777777777888888888888887777788888888888888888888888773

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.5e-34  Score=274.69  Aligned_cols=206  Identities=24%  Similarity=0.260  Sum_probs=159.2

Q ss_pred             chhhHHHHHHcCCHHHHHHHHH---hcCCCCcc----CCCCCchHHHHHHHc---CcHHHHHHHHhCCCCCCCC------
Q 009183           26 AVTDVFSASAYGDFEKLRKFVE---EDGASVSR----PDGNGYFALQWAALN---NFADIAQYIIDHGGDVNAT------   89 (541)
Q Consensus        26 ~~~~L~~A~~~g~~~~v~~ll~---~~~~~~~~----~d~~g~t~Lh~A~~~---~~~~iv~~Ll~~g~~~~~~------   89 (541)
                      |.++||.|++.|+.+.++.+++   +.+.+++.    +|.+|.||||+|+..   |+.+++++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            6788888988888875543333   45888887    788888888888888   8888888888888776533      


Q ss_pred             -----CCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHH
Q 009183           90 -----DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPL  164 (541)
Q Consensus        90 -----~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L  164 (541)
                           +..|.||||+|+..|+.+++++|+++|++++.+|..+..                     ..+.+..|..|.|||
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~---------------------~~~~~~~~~~g~tpL  140 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF---------------------QKHQGTCFYFGELPL  140 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG---------------------SCCSSSCCCSCSSHH
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccc---------------------cccccccccCCCCHH
Confidence                 356888888888888888888888888888887766431                     123344445578888


Q ss_pred             HHHHHhCcHHHHHHHHh---cCCCCCcccCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCCCC-------cccC
Q 009183          165 HWAAYKGFADTIRLLLF---RDASQGRQDKDGCTPLHWAAL--RGNVE-------ACTVLVHAGTKQEL-------TAKD  225 (541)
Q Consensus       165 ~~A~~~~~~~~v~~Ll~---~g~~~~~~d~~g~tpLh~A~~--~g~~~-------~v~~Ll~~g~~~~~-------~~~d  225 (541)
                      |+|+..|+.+++++|++   +|++++.+|.+|+||||+|+.  .++.+       ++++|+++|+  ++       +.+|
T Consensus       141 ~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga--~~~~~~~~~~~~d  218 (256)
T 2etb_A          141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA--RLCPTVQLEEISN  218 (256)
T ss_dssp             HHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH--HHSTTCCGGGCCC
T ss_pred             HHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCC--CcccccccccccC
Confidence            88888888888888888   788888888888888888887  67777       8888888887  44       6778


Q ss_pred             CCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183          226 KAGLTPTQLAYDKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       226 ~~g~t~l~~A~~~~~~~i~~~L~~~~~~~  254 (541)
                      ..|.|||++|++.|+.+++++|++++...
T Consensus       219 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          219 HQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            88888888888888888888888877654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1e-33  Score=270.53  Aligned_cols=170  Identities=20%  Similarity=0.132  Sum_probs=138.3

Q ss_pred             CchHHHHHHHcCcHH----HHHHHHhCCCCCCC----CCCCCchHHHHHHHh---CCHHHHHHHHhCCCCCCccccCCCh
Q 009183           60 GYFALQWAALNNFAD----IAQYIIDHGGDVNA----TDNNGQTALHWAAVR---GSIAVADVLVQNGARVEAADVHGYR  128 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~----iv~~Ll~~g~~~~~----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t  128 (541)
                      |.||||.|+..|+.+    ++++|+++|++++.    .+..|.||||+|+..   |+.+++++|+++|++++..+.    
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~----   77 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP----   77 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC----
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh----
Confidence            778888888888886    56677778888887    788888888888888   888888888888877654330    


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCC-------------CCc
Q 009183          129 AVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKD-------------GCT  195 (541)
Q Consensus       129 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-------------g~t  195 (541)
                                      ++   .......|..|.||||+|+..|+.+++++|+++|++++.+|..             |.|
T Consensus        78 ----------------~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~t  138 (256)
T 2etb_A           78 ----------------LV---NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL  138 (256)
T ss_dssp             ----------------GG---GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSS
T ss_pred             ----------------hc---ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCC
Confidence                            01   1223344566778888888888888888888888888777765             999


Q ss_pred             HHHHHHHcCCHHHHHHHHH---cCCCCCCcccCCCCCCHHHHHHh--cCchH-------HHHHHHHhhhhc
Q 009183          196 PLHWAALRGNVEACTVLVH---AGTKQELTAKDKAGLTPTQLAYD--KGHRQ-------VALYLSNAQHMH  254 (541)
Q Consensus       196 pLh~A~~~g~~~~v~~Ll~---~g~~~~~~~~d~~g~t~l~~A~~--~~~~~-------i~~~L~~~~~~~  254 (541)
                      |||+|+..|+.+++++|++   +|+  +++.+|..|.||||+|+.  .++.+       ++++|++.+...
T Consensus       139 pL~~A~~~~~~~~v~~Ll~~~~~ga--~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          139 PLSLAACTKQWDVVTYLLENPHQPA--SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCC--CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCC--CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            9999999999999999999   887  788899999999999999  78888       999999988766

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-33  Score=274.89  Aligned_cols=220  Identities=23%  Similarity=0.331  Sum_probs=196.0

Q ss_pred             HHHHcCCHHHHHHHHHhcCCC--------CccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh
Q 009183           32 SASAYGDFEKLRKFVEEDGAS--------VSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR  103 (541)
Q Consensus        32 ~A~~~g~~~~v~~ll~~~~~~--------~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~  103 (541)
                      .+++.+..+.++.++.+....        ....+.+|.||||.||..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   83 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID   83 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence            577888889999998764321        112234678999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh-c
Q 009183          104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF-R  182 (541)
Q Consensus       104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~  182 (541)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |.+++..|..|.||||+|+..++.++++.++. .
T Consensus        84 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~  162 (299)
T 1s70_B           84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ  162 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999987 99999999999999999999999999887764 3


Q ss_pred             CCCCC--------------------------cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHH
Q 009183          183 DASQG--------------------------RQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY  236 (541)
Q Consensus       183 g~~~~--------------------------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~  236 (541)
                      +.+++                          ..+..|.||||+|+..|+.+++++|+++|+  +++.+|..|.|||++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~--d~~~~d~~g~tpL~~A~  240 (299)
T 1s70_B          163 GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY--DVNIKDYDGWTPLHAAA  240 (299)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC--CTTCCCTTCCCHHHHHH
T ss_pred             CCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC--CCCCcCCCCCcHHHHHH
Confidence            44432                          356779999999999999999999999998  77889999999999999


Q ss_pred             hcCchHHHHHHHHhhhhc
Q 009183          237 DKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       237 ~~~~~~i~~~L~~~~~~~  254 (541)
                      +.|+.+++++|++++...
T Consensus       241 ~~~~~~~v~~Ll~~gad~  258 (299)
T 1s70_B          241 HWGKEEACRILVENLCDM  258 (299)
T ss_dssp             HTTCHHHHHHHHHTTCCT
T ss_pred             hcCCHHHHHHHHHcCCCC
Confidence            999999999999987654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.5e-32  Score=244.03  Aligned_cols=160  Identities=32%  Similarity=0.539  Sum_probs=149.6

Q ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHH
Q 009183           28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA  107 (541)
Q Consensus        28 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~  107 (541)
                      +.|+.||+.|+.+.|+.||+. |+++|.+|.+|.||||+|+..++.+++++|+++|++++.++.+|.||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            579999999999999999976 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q 009183          108 VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQG  187 (541)
Q Consensus       108 ~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  187 (541)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           85 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            99999999999999999999999999999999999999986 99999999999999999999999999999999999987


Q ss_pred             cc
Q 009183          188 RQ  189 (541)
Q Consensus       188 ~~  189 (541)
                      ..
T Consensus       164 ~~  165 (169)
T 4gpm_A          164 HH  165 (169)
T ss_dssp             --
T ss_pred             CC
Confidence            53

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=258.52  Aligned_cols=214  Identities=21%  Similarity=0.266  Sum_probs=195.1

Q ss_pred             CCceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCc-cCCCCCchHHHHHHHcCcHHHHHHHHh
Q 009183            3 SSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVS-RPDGNGYFALQWAALNNFADIAQYIID   81 (541)
Q Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~d~~g~t~Lh~A~~~~~~~iv~~Ll~   81 (541)
                      .+..++++.+.+...+....+..+.++|+.|+..|+.++++.|++. +.+++ ..+..|.||||+|+..|+.+++++|++
T Consensus        19 ~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~   97 (240)
T 3eu9_A           19 YGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK   97 (240)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHH
Confidence            3566778888887777778888999999999999999999999987 55555 445569999999999999999999999


Q ss_pred             CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC-HHHHHHHHHhcCCCcccCCC-C
Q 009183           82 HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ-TSFLNHIVAKYHADYDASDN-E  159 (541)
Q Consensus        82 ~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~-~~~v~~Ll~~~~~~~~~~d~-~  159 (541)
                      +|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..++ .+++++|++. +.+++..+. .
T Consensus        98 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~-~~~~~~~~~~~  176 (240)
T 3eu9_A           98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYH  176 (240)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT-TCCTTCCCTTT
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhc-CCCcchhhccC
Confidence            999999999999999999999999999999999999999999999999999997776 6778777765 999999987 8


Q ss_pred             CCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183          160 GRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK  218 (541)
Q Consensus       160 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  218 (541)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++++.
T Consensus       177 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          177 KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999873

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=4.3e-33  Score=268.79  Aligned_cols=203  Identities=21%  Similarity=0.243  Sum_probs=176.8

Q ss_pred             CCCCccCCCCCchHHHHHHHcCcHHHHHHHHh----CCCCCC----CCCCCCchHHHHHHHh---CCHHHHHHHHhCCCC
Q 009183           50 GASVSRPDGNGYFALQWAALNNFADIAQYIID----HGGDVN----ATDNNGQTALHWAAVR---GSIAVADVLVQNGAR  118 (541)
Q Consensus        50 ~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~----~g~~~~----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~  118 (541)
                      ++..+..|..|.||||.|+..|+.++|+.|++    .+++++    ..+..|.||||+|+..   |+.+++++|+++|++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            45567788999999999999999999888886    566665    4578899999999987   999999999999865


Q ss_pred             C-------Cc----cccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCC--------------CCCcHHHHHHHhCcH
Q 009183          119 V-------EA----ADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDN--------------EGRSPLHWAAYKGFA  173 (541)
Q Consensus       119 ~-------~~----~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~L~~A~~~~~~  173 (541)
                      +       +.    +|..|.||||+|+..|+.+++++|++. |++++.++.              .|.||||+|+..|+.
T Consensus        83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  161 (273)
T 2pnn_A           83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL  161 (273)
T ss_dssp             TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred             ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence            3       22    567899999999999999999999987 999999987              799999999999999


Q ss_pred             HHHHHHHh---cCCCCCcccCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCC-----cccCCCCCCHHHHHH
Q 009183          174 DTIRLLLF---RDASQGRQDKDGCTPLHWAALRGN---------VEACTVLVHAGTKQEL-----TAKDKAGLTPTQLAY  236 (541)
Q Consensus       174 ~~v~~Ll~---~g~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~g~~~~~-----~~~d~~g~t~l~~A~  236 (541)
                      +++++|++   +|++++.+|..|+||||+|+..|+         .+++++|+++|++.+.     +.+|..|.|||++|+
T Consensus       162 ~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~  241 (273)
T 2pnn_A          162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA  241 (273)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHH
Confidence            99999999   999999999999999999999988         8999999999984332     358999999999999


Q ss_pred             hcCchHHHHHHHHhhhh
Q 009183          237 DKGHRQVALYLSNAQHM  253 (541)
Q Consensus       237 ~~~~~~i~~~L~~~~~~  253 (541)
                      +.|+.+++++|++++..
T Consensus       242 ~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          242 SSGKIGVLAYILQREIH  258 (273)
T ss_dssp             HTTCHHHHHHHHHHHTC
T ss_pred             HhChHHHHHHHHHCCCC
Confidence            99999999999999874

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=8.2e-33  Score=264.75  Aligned_cols=211  Identities=21%  Similarity=0.195  Sum_probs=147.4

Q ss_pred             CcchhhHHHHHHcCCHHHHHHHHH---hcCCCCccCC----CCCchHHHHHH---HcCcHHHHHHHHhCCCC--------
Q 009183           24 QAAVTDVFSASAYGDFEKLRKFVE---EDGASVSRPD----GNGYFALQWAA---LNNFADIAQYIIDHGGD--------   85 (541)
Q Consensus        24 ~~~~~~L~~A~~~g~~~~v~~ll~---~~~~~~~~~d----~~g~t~Lh~A~---~~~~~~iv~~Ll~~g~~--------   85 (541)
                      ..+.++|+.|++.|+.+.++.+++   +.+.+++..+    .+|.||||+|+   ..|+.+++++|+++|++        
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            456788999999999987766666   4577777655    67889999888   66888999999887744        


Q ss_pred             ---CCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCc
Q 009183           86 ---VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRS  162 (541)
Q Consensus        86 ---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  162 (541)
                         .+..+..|.||||+|+..|+.+++++|+++|++++.++..+..                    ...+.+..+..|.|
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~--------------------~~~~~~~~~~~g~t  142 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF--------------------QPKDEGGYFYFGEL  142 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC--------------------SSSCCCCSCCSCSS
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc--------------------CcccccccccCCCC
Confidence               3334447888888888888888888888888888877742100                    01122333356677


Q ss_pred             HHHHHHHhCcHHHHHHHHh---cCCCCCcccCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCC-----cccC
Q 009183          163 PLHWAAYKGFADTIRLLLF---RDASQGRQDKDGCTPLHWAALRGN---------VEACTVLVHAGTKQEL-----TAKD  225 (541)
Q Consensus       163 ~L~~A~~~~~~~~v~~Ll~---~g~~~~~~d~~g~tpLh~A~~~g~---------~~~v~~Ll~~g~~~~~-----~~~d  225 (541)
                      |||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..++         .+++++|+++|++.+.     +.+|
T Consensus       143 pL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d  222 (260)
T 3jxi_A          143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN  222 (260)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhccc
Confidence            7777777777777777777   677777777777777777776665         5677777777663222     5567


Q ss_pred             CCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183          226 KAGLTPTQLAYDKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       226 ~~g~t~l~~A~~~~~~~i~~~L~~~~~~~  254 (541)
                      ..|.|||++|++.|+.+++++|++++...
T Consensus       223 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          223 NDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            77777777777777777777777766544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2e-33  Score=278.31  Aligned_cols=231  Identities=14%  Similarity=0.113  Sum_probs=133.9

Q ss_pred             EEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCcc-----------------CCCCCchHHHHHHH
Q 009183            7 EVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSR-----------------PDGNGYFALQWAAL   69 (541)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-----------------~d~~g~t~Lh~A~~   69 (541)
                      |+++.+.+.+.+....+..+.++++     |+.++++.|+++ |.+++.                 +.....+.+|+|+.
T Consensus        33 dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~-g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~  106 (327)
T 1sw6_A           33 DLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQR-LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFD  106 (327)
T ss_dssp             TCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHH-HHC-------------------------------CHH
T ss_pred             chHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHh-ccCCccccchHhhhcccccccccccCCccchhHHHHH
Confidence            4456666777777777777777755     777777777765 433332                 11111223466666


Q ss_pred             cCcHHHHHHHHhCCCCCCC-CCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC---HHHHHHH
Q 009183           70 NNFADIAQYIIDHGGDVNA-TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ---TSFLNHI  145 (541)
Q Consensus        70 ~~~~~iv~~Ll~~g~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~---~~~v~~L  145 (541)
                      .+..++++.|++.|++++. ++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+   .++++.|
T Consensus       107 ~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~l  186 (327)
T 1sw6_A          107 SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL  186 (327)
T ss_dssp             HHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred             hhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHH
Confidence            6666677777777777776 66667777777777777777777777777777777777777777777666   4555555


Q ss_pred             HHhcCCCcccCCCCCCcHHHHHHH----hCcHHHHHHHHhc--------------------CCCCCcccCCCCcHHHHHH
Q 009183          146 VAKYHADYDASDNEGRSPLHWAAY----KGFADTIRLLLFR--------------------DASQGRQDKDGCTPLHWAA  201 (541)
Q Consensus       146 l~~~~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~d~~g~tpLh~A~  201 (541)
                      ++....+++.+|..|.||||+|+.    .|+.+++++|++.                    |++++.+|..|.||||.|+
T Consensus       187 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~  266 (327)
T 1sw6_A          187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL  266 (327)
T ss_dssp             HHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHC
T ss_pred             HHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHH
Confidence            555445566667777777777776    6666777766654                    5666666666666666665


Q ss_pred             HcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhh
Q 009183          202 LRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHM  253 (541)
Q Consensus       202 ~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~  253 (541)
                      .      +++|+++    +++.+|..|.||||+|++.|+.+++++|++++..
T Consensus       267 ~------~~~Ll~~----~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad  308 (327)
T 1sw6_A          267 D------LKWIIAN----MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD  308 (327)
T ss_dssp             S------HHHHHHH----TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred             H------HHHHHHh----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3      5555555    2445566666666666666666666666655543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.1e-31  Score=256.90  Aligned_cols=172  Identities=16%  Similarity=0.128  Sum_probs=135.0

Q ss_pred             CCCchHHHHHHHcCcHHH----HHHHHhCCCCCCCCC----CCCchHHHHHH---HhCCHHHHHHHHhCCCCCCccccCC
Q 009183           58 GNGYFALQWAALNNFADI----AQYIIDHGGDVNATD----NNGQTALHWAA---VRGSIAVADVLVQNGARVEAADVHG  126 (541)
Q Consensus        58 ~~g~t~Lh~A~~~~~~~i----v~~Ll~~g~~~~~~~----~~g~tpL~~A~---~~g~~~~v~~Ll~~g~~~~~~d~~g  126 (541)
                      ..|.|+||.|+..|+.+.    +++|++.|++++..+    ..|.||||+|+   +.|+.+++++|++.|+++....   
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~---   79 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR---   79 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH---
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH---
Confidence            456677777777777774    344444777776554    55777777777   5677777777777765432110   


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCccc--------------CC
Q 009183          127 YRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD--------------KD  192 (541)
Q Consensus       127 ~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d--------------~~  192 (541)
                                       .++   ....+..|..|.||||+|+..|+.+++++|+++|++++.+|              ..
T Consensus        80 -----------------~~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  139 (260)
T 3jxi_A           80 -----------------EFI---NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF  139 (260)
T ss_dssp             -----------------HHH---TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCS
T ss_pred             -----------------hhh---cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccC
Confidence                             011   35566777789999999999999999999999999999988              68


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHH---cCCCCCCcccCCCCCCHHHHHHhcCc---------hHHHHHHHHhhhhc
Q 009183          193 GCTPLHWAALRGNVEACTVLVH---AGTKQELTAKDKAGLTPTQLAYDKGH---------RQVALYLSNAQHMH  254 (541)
Q Consensus       193 g~tpLh~A~~~g~~~~v~~Ll~---~g~~~~~~~~d~~g~t~l~~A~~~~~---------~~i~~~L~~~~~~~  254 (541)
                      |.||||+|+..|+.+++++|++   +|+  +++.+|..|.||||+|++.++         .+++++|++.+...
T Consensus       140 g~tpL~~A~~~g~~~~v~~Ll~~~~~ga--~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          140 GELPLSLAACTNQPHIVHYLTENGHKQA--DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSCCC--CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccCC--CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999   787  788899999999999998887         69999999988765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=9.9e-31  Score=238.26  Aligned_cols=164  Identities=20%  Similarity=0.289  Sum_probs=141.5

Q ss_pred             CCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHH
Q 009183           52 SVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVH  131 (541)
Q Consensus        52 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~  131 (541)
                      .+|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            45677888999999999999999999999888888888888899999999999999999999988888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHH
Q 009183          132 VAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV  211 (541)
Q Consensus       132 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~  211 (541)
                      +|+..|+.+++++|++. +++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            88888888888888876 88888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcC
Q 009183          212 LVHAG  216 (541)
Q Consensus       212 Ll~~g  216 (541)
                      |+++|
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            88764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=5.3e-31  Score=254.34  Aligned_cols=190  Identities=23%  Similarity=0.309  Sum_probs=165.5

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhCCCC--CCCCCCCCchHHHHHHHhCCHHHHHHHHhCCC-CCCccccCCChHHHHHH--
Q 009183           60 GYFALQWAALNNFADIAQYIIDHGGD--VNATDNNGQTALHWAAVRGSIAVADVLVQNGA-RVEAADVHGYRAVHVAA--  134 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~l~~A~--  134 (541)
                      +.+++|.|+..++.+.++.+++.+.+  +|.+|.+|.||||+|+..|+.+++++|++.|+ +++.+|..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            44678889999999999888877665  78888889999999999999999999999997 88889999999999998  


Q ss_pred             ---HcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHH
Q 009183          135 ---QYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV  211 (541)
Q Consensus       135 ---~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~  211 (541)
                         ..++.++++.|++. +.+.+..|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence               56778888888876 77788888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-cCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          212 LVH-AGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       212 Ll~-~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      |++ .|+  +++.+|..|.|||++|++.|+.+++++|+++..
T Consensus       235 Ll~~~ga--d~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          235 LLAVPSC--DISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHTSTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHhcCCC--CCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            998 787  677888999999999999999999999887653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=6.2e-31  Score=253.86  Aligned_cols=189  Identities=22%  Similarity=0.280  Sum_probs=177.0

Q ss_pred             hhhHHHHHHcCCHHHHHHHHHhc-CCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCchHHHHHH---
Q 009183           27 VTDVFSASAYGDFEKLRKFVEED-GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAA---  101 (541)
Q Consensus        27 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~~~g~tpL~~A~---  101 (541)
                      .++++.|+..|+.+.++.+++.. ...+|.+|.+|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            45667888889999998887652 12488999999999999999999999999999998 99999999999999999   


Q ss_pred             --HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHH
Q 009183          102 --VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL  179 (541)
Q Consensus       102 --~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  179 (541)
                        ..++.++++.|++.|.+++..|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~~L  235 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAGLL  235 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence              67899999999999999999999999999999999999999999987 999999999999999999999999999999


Q ss_pred             Hh-cCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183          180 LF-RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       180 l~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  216 (541)
                      ++ .|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus       236 l~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          236 LAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            99 89999999999999999999999999999999876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.4e-30  Score=231.22  Aligned_cols=168  Identities=20%  Similarity=0.375  Sum_probs=83.6

Q ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHH
Q 009183           28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA  107 (541)
Q Consensus        28 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~  107 (541)
                      ++|+.|++.|+.+.++.+++..+..++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD   83 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHH
Confidence            44555555555555555554433334455555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q 009183          108 VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQG  187 (541)
Q Consensus       108 ~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  187 (541)
                      ++++|+++|+++                                  +.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus        84 ~v~~Ll~~g~~~----------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  129 (172)
T 3v30_A           84 IVGLLLERDVDI----------------------------------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT  129 (172)
T ss_dssp             HHHHHHTTTCCT----------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCCC----------------------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            555555554444                                  4444455555555555555555555555555555


Q ss_pred             cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCH
Q 009183          188 RQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTP  231 (541)
Q Consensus       188 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~  231 (541)
                      .+|..|.||||+|+..|+.+++++|+++|+  ++..++..|.||
T Consensus       130 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~--~~~~~~~~~~~p  171 (172)
T 3v30_A          130 TEADSGYTPMDLAVALGYRKVQQVIENHIL--KLFQSNLVPADP  171 (172)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHHH--HHSCC-------
T ss_pred             ccCCCCCCHHHHHHHhCcHHHHHHHHHHHH--HHhcccCCCCCC
Confidence            555555555555555555555555555554  333444444443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.8e-30  Score=230.79  Aligned_cols=159  Identities=21%  Similarity=0.287  Sum_probs=138.0

Q ss_pred             CCceEEeeccccCCCC-CCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHh
Q 009183            3 SSEIEVVSSTEAIPNE-NQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIID   81 (541)
Q Consensus         3 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~   81 (541)
                      .++.++++.+.+.... ....+..|.||||.|+..|+.++++.|++. +.+++.+|..|.||||+|+..|+.+++++|++
T Consensus        12 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   90 (172)
T 3v30_A           12 QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYTDIVGLLLE   90 (172)
T ss_dssp             TTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCCCHHHHHHHHH
Confidence            3556666666666554 566788999999999999999999999976 89999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC
Q 009183           82 HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGR  161 (541)
Q Consensus        82 ~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~  161 (541)
                      +|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +.++..++..|.
T Consensus        91 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~-~~~~~~~~~~~~  169 (172)
T 3v30_A           91 RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVPA  169 (172)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHHHSCC-----
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH-HHHHhcccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999976 677777777776


Q ss_pred             cH
Q 009183          162 SP  163 (541)
Q Consensus       162 t~  163 (541)
                      ||
T Consensus       170 ~p  171 (172)
T 3v30_A          170 DP  171 (172)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.1e-29  Score=226.33  Aligned_cols=158  Identities=33%  Similarity=0.448  Sum_probs=113.4

Q ss_pred             CCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcC
Q 009183           58 GNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG  137 (541)
Q Consensus        58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g  137 (541)
                      ..+.++||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            44566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183          138 QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       138 ~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  216 (541)
                      +.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus        92 ~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           92 HLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            77777777655 6667777777777777777777777777777777777777777777777777777777777777654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=7.8e-30  Score=226.74  Aligned_cols=158  Identities=23%  Similarity=0.282  Sum_probs=112.0

Q ss_pred             CCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC
Q 009183           59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ  138 (541)
Q Consensus        59 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~  138 (541)
                      .|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            46677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183          139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT  217 (541)
Q Consensus       139 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  217 (541)
                      .+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++++
T Consensus        82 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A           82 TDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             HHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            7777666655 66666666667777777777777777777777777777667667777777777777777777766654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=7.5e-30  Score=225.56  Aligned_cols=157  Identities=29%  Similarity=0.366  Sum_probs=122.1

Q ss_pred             CCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC
Q 009183           59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ  138 (541)
Q Consensus        59 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~  138 (541)
                      ...||||.|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45577888888888888888887777777777777788887777 77888888888777777777777777777777777


Q ss_pred             HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC-CCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183          139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS-QGRQDKDGCTPLHWAALRGNVEACTVLVHAGT  217 (541)
Q Consensus       139 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  217 (541)
                      .+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        83 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           83 LDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             HHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            7777777765 777777777788888888888888888888887776 47777778888888888888888888888776

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.1e-29  Score=231.24  Aligned_cols=164  Identities=26%  Similarity=0.379  Sum_probs=157.7

Q ss_pred             CCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHH
Q 009183           86 VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLH  165 (541)
Q Consensus        86 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~  165 (541)
                      ++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~  106 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLM  106 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHH
Confidence            467888999999999999999999999999999999999999999999999999999999987 8999999999999999


Q ss_pred             HHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHH
Q 009183          166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL  245 (541)
Q Consensus       166 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~  245 (541)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.||+++|+..|+.++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA--DISARDLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence            9999999999999999999999999999999999999999999999999998  77889999999999999999999999


Q ss_pred             HHHHhhh
Q 009183          246 YLSNAQH  252 (541)
Q Consensus       246 ~L~~~~~  252 (541)
                      +|++.++
T Consensus       185 ~Ll~~~~  191 (192)
T 2rfm_A          185 IFTEVRR  191 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHhccC
Confidence            9998764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.3e-32  Score=257.67  Aligned_cols=199  Identities=22%  Similarity=0.226  Sum_probs=168.8

Q ss_pred             HHHHHhcCCCCc---cCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCC
Q 009183           43 RKFVEEDGASVS---RPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARV  119 (541)
Q Consensus        43 ~~ll~~~~~~~~---~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  119 (541)
                      +.++++ +.+++   ..+.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus         2 ~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            2 RSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             eehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            455554 44443   44567788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCC-CCCCcHHHHH--HHhCcHHHHHHHHhcCCCCCcccCCCCcH
Q 009183          120 EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD-NEGRSPLHWA--AYKGFADTIRLLLFRDASQGRQDKDGCTP  196 (541)
Q Consensus       120 ~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~L~~A--~~~~~~~~v~~Ll~~g~~~~~~d~~g~tp  196 (541)
                      +.+|..|.||||+|+..|+.+++++|++. |++++.++ ..|.||||+|  +..|+.+++++|+++|++++.+|..|.||
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  159 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA  159 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence            99999999999999999999999999976 89999886 5999999999  99999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHH
Q 009183          197 LHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALY  246 (541)
Q Consensus       197 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~  246 (541)
                      ++.++..+.   .+.|++.|++.+++.+|..|.|||++|+++|+.++++.
T Consensus       160 l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          160 LWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             SSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             HHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            986655543   35778889866688899999999999999999887754

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=6.9e-29  Score=220.61  Aligned_cols=161  Identities=22%  Similarity=0.314  Sum_probs=154.5

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhC
Q 009183           92 NGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKG  171 (541)
Q Consensus        92 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~  171 (541)
                      +|.||||.|+..|+.++++.|++.|++++.+|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcC
Confidence            578999999999999999999999999999999999999999999999999999987 9999999999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183          172 FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ  251 (541)
Q Consensus       172 ~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~  251 (541)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.||+++|++.|+.+++++|.++.
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA--DPTIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998  77889999999999999999999999999987


Q ss_pred             hhcc
Q 009183          252 HMHR  255 (541)
Q Consensus       252 ~~~~  255 (541)
                      ....
T Consensus       159 ~~~~  162 (167)
T 3v31_A          159 LKLL  162 (167)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            6543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3.8e-29  Score=225.02  Aligned_cols=167  Identities=21%  Similarity=0.302  Sum_probs=118.1

Q ss_pred             cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhC
Q 009183           25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRG  104 (541)
Q Consensus        25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g  104 (541)
                      .+.++|+.|++.|+.+.++.+++..+.+++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            35567777777777777777777767777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCC
Q 009183          105 SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA  184 (541)
Q Consensus       105 ~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~  184 (541)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.|||++|+..++.+++++|+++|+
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            77777777777777777777777777777777777766666654 66666666666666666666666666666666666


Q ss_pred             CCCcccCC
Q 009183          185 SQGRQDKD  192 (541)
Q Consensus       185 ~~~~~d~~  192 (541)
                      +++..+..
T Consensus       163 ~~~~~~~~  170 (179)
T 3f6q_A          163 NLNRIPYK  170 (179)
T ss_dssp             CCSCBCCC
T ss_pred             CcccCCcc
Confidence            66655443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.2e-28  Score=219.54  Aligned_cols=162  Identities=28%  Similarity=0.484  Sum_probs=151.7

Q ss_pred             CCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 009183           20 QNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHW   99 (541)
Q Consensus        20 ~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~   99 (541)
                      ......+.++|+.|++.|+.+.++.|++. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   86 (169)
T 2y1l_E            8 HHHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL   86 (169)
T ss_dssp             -----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence            34556678999999999999999999976 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHH
Q 009183          100 AAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLL  179 (541)
Q Consensus       100 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  179 (541)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++ +++++.+|..|.||||+|+..|+.+++++|
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L  165 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEIL  165 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999987 999999999999999999999999999999


Q ss_pred             HhcC
Q 009183          180 LFRD  183 (541)
Q Consensus       180 l~~g  183 (541)
                      ++.|
T Consensus       166 ~~~G  169 (169)
T 2y1l_E          166 QKLN  169 (169)
T ss_dssp             HTC-
T ss_pred             HHcC
Confidence            9875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=6.9e-29  Score=219.35  Aligned_cols=159  Identities=25%  Similarity=0.349  Sum_probs=149.2

Q ss_pred             CcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh
Q 009183           24 QAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR  103 (541)
Q Consensus        24 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~  103 (541)
                      +...++|+.|+..|+.+.++.|++ .+.+++.+|..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHh-CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            346799999999999999999996 489999999999999999999 999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCCCcHHHHHHHhCcHHHHHHHHhc
Q 009183          104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD-YDASDNEGRSPLHWAAYKGFADTIRLLLFR  182 (541)
Q Consensus       104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  182 (541)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +.+ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999988 555 699999999999999999999999999999


Q ss_pred             CCC
Q 009183          183 DAS  185 (541)
Q Consensus       183 g~~  185 (541)
                      |++
T Consensus       160 GAd  162 (162)
T 1ihb_A          160 GAG  162 (162)
T ss_dssp             C--
T ss_pred             CCC
Confidence            985

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.3e-28  Score=215.40  Aligned_cols=150  Identities=25%  Similarity=0.311  Sum_probs=84.7

Q ss_pred             chHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHH
Q 009183           61 YFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS  140 (541)
Q Consensus        61 ~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~  140 (541)
                      .|+||.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            355566666666666666665555544 3445556666666556666666665555555555555555555555555555


Q ss_pred             HHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHH
Q 009183          141 FLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL  212 (541)
Q Consensus       141 ~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  212 (541)
                      ++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus        82 ~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           82 IVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            55555543 555555555555555555555555555555555555555555555555555555555555544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=6.6e-30  Score=252.93  Aligned_cols=202  Identities=16%  Similarity=0.150  Sum_probs=166.4

Q ss_pred             hhhHHHHHHcCCHHHHHHHHHhcCCCCcc-CCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCC
Q 009183           27 VTDVFSASAYGDFEKLRKFVEEDGASVSR-PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGS  105 (541)
Q Consensus        27 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~  105 (541)
                      ...++.|+..+..++++ ++.+.+.++|. +|.+|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+
T Consensus        98 ~~~~~~a~~~~~~~~~~-~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A           98 QQQQHVSFDSLLQEVND-AFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             ------CHHHHHHHHHH-HCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             cchhHHHHHhhHHHHHH-HHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcc
Confidence            34456666666555555 45566999999 89999999999999999999999999999999999999999999999998


Q ss_pred             ---HHHHHHHHhCC-CCCCccccCCChHHHHHHH----cCCHHHHHHHHHhc-------------------CCCcccCCC
Q 009183          106 ---IAVADVLVQNG-ARVEAADVHGYRAVHVAAQ----YGQTSFLNHIVAKY-------------------HADYDASDN  158 (541)
Q Consensus       106 ---~~~v~~Ll~~g-~~~~~~d~~g~t~l~~A~~----~g~~~~v~~Ll~~~-------------------~~~~~~~d~  158 (541)
                         .++++.|++.+ ++++.+|..|.||||+|+.    .|+.+++++|++..                   +++++.+|.
T Consensus       177 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~  256 (327)
T 1sw6_A          177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG  256 (327)
T ss_dssp             HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred             cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc
Confidence               78888888887 7899999999999999999    89999999998753                   889999999


Q ss_pred             CCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhc
Q 009183          159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK  238 (541)
Q Consensus       159 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~  238 (541)
                      .|.||||.|+.      +++|+++  +++.+|..|+||||+|+..|+.+++++|+++|+  +++.+|..|+|||++|+++
T Consensus       257 ~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga--d~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          257 ERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGA--DPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             ---CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC--CTTCCCTTSCCGGGGTCC-
T ss_pred             cCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCcccCCCCCCHHHHHHhc
Confidence            99999999985      8889988  689999999999999999999999999999998  7888999999999999876


Q ss_pred             C
Q 009183          239 G  239 (541)
Q Consensus       239 ~  239 (541)
                      |
T Consensus       327 g  327 (327)
T 1sw6_A          327 E  327 (327)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=8.7e-29  Score=222.69  Aligned_cols=166  Identities=23%  Similarity=0.291  Sum_probs=147.0

Q ss_pred             CCCchHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHc
Q 009183           58 GNGYFALQWAALNNFADIAQYIIDH-GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY  136 (541)
Q Consensus        58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~  136 (541)
                      .++.++||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            4678899999999999999999987 667888999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183          137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  216 (541)
                      |+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|
T Consensus        83 ~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           83 GHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            999999999976 8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCC
Q 009183          217 TKQELTAKDK  226 (541)
Q Consensus       217 ~~~~~~~~d~  226 (541)
                      +  +++..+.
T Consensus       162 ~--~~~~~~~  169 (179)
T 3f6q_A          162 Q--NLNRIPY  169 (179)
T ss_dssp             C--CCSCBCC
T ss_pred             c--CcccCCc
Confidence            8  4444443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1e-28  Score=219.11  Aligned_cols=157  Identities=27%  Similarity=0.322  Sum_probs=79.0

Q ss_pred             CCchHHHHHHHcCcHHHHHHHHh-CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcC
Q 009183           59 NGYFALQWAALNNFADIAQYIID-HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG  137 (541)
Q Consensus        59 ~g~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g  137 (541)
                      +|.|+||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   86 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence            34444444444444444444443 22233333444444444444444444444444444444444444444444444444


Q ss_pred             CHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183          138 QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT  217 (541)
Q Consensus       138 ~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  217 (541)
                      +.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|+
T Consensus        87 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           87 HYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             cHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            44444444443 44455555555555555555555566666666666666666666666666544 55566666665553

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=8.3e-29  Score=219.62  Aligned_cols=161  Identities=29%  Similarity=0.427  Sum_probs=132.5

Q ss_pred             CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 009183           22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA  101 (541)
Q Consensus        22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~  101 (541)
                      .+..+.++|+.|++.|+.+.++.+++..+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            35667888888888888888888888777788888888888888888888888888888888888888888888888888


Q ss_pred             HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh
Q 009183          102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF  181 (541)
Q Consensus       102 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  181 (541)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+. ++.+++++|++
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence            88888888888888888888888888888888888888888888876 88888888888888888666 77888888887


Q ss_pred             cCC
Q 009183          182 RDA  184 (541)
Q Consensus       182 ~g~  184 (541)
                      +|+
T Consensus       162 ~gA  164 (165)
T 3twr_A          162 DAA  164 (165)
T ss_dssp             C--
T ss_pred             ccc
Confidence            765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.1e-31  Score=251.53  Aligned_cols=195  Identities=23%  Similarity=0.231  Sum_probs=176.3

Q ss_pred             cCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCC
Q 009183           14 AIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNG   93 (541)
Q Consensus        14 ~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g   93 (541)
                      ..+......+..+.++|+.|+..|+.+.++.|++. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus         9 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g   87 (229)
T 2vge_A            9 GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG   87 (229)
T ss_dssp             -CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            34444556677889999999999999999999976 88999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhCCHHHHHHHHhCCCCCCccc-cCCChHHHHH--HHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHh
Q 009183           94 QTALHWAAVRGSIAVADVLVQNGARVEAAD-VHGYRAVHVA--AQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK  170 (541)
Q Consensus        94 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~l~~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  170 (541)
                      .||||+|+..|+.+++++|+++|++++.++ ..|.||||+|  +..|+.+++++|++. |++++.+|..|.|+++.++..
T Consensus        88 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~l~~~~~~  166 (229)
T 2vge_A           88 WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYSAE  166 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH-HHHTTTSGGGEEEESSCBCCS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc-CCCcccccCCchHHHHHHhhc
Confidence            999999999999999999999999999987 6999999999  999999999999987 889999999999999976555


Q ss_pred             CcHHHHHHHHhcCCC--CCcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009183          171 GFADTIRLLLFRDAS--QGRQDKDGCTPLHWAALRGNVEACTVLV  213 (541)
Q Consensus       171 ~~~~~v~~Ll~~g~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  213 (541)
                      +.   .++|++.|++  ++.+|.+|+||||+|+..|+.++|+.++
T Consensus       167 ~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          167 FG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             ST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             cc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            43   3677888988  6788999999999999999999997654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=5.4e-28  Score=211.53  Aligned_cols=151  Identities=30%  Similarity=0.393  Sum_probs=145.0

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc
Q 009183           93 GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF  172 (541)
Q Consensus        93 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~  172 (541)
                      ..||||.|+..|+.+++++|++.|++++ +|..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCh
Confidence            4689999999999999999999999886 688999999999999999999999976 99999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHH
Q 009183          173 ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL  247 (541)
Q Consensus       173 ~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L  247 (541)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.||+++|++.|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA--DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999999999999999999999999999999998  7788999999999999999999999987

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=4.4e-28  Score=212.79  Aligned_cols=151  Identities=28%  Similarity=0.399  Sum_probs=80.2

Q ss_pred             hhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCH
Q 009183           27 VTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSI  106 (541)
Q Consensus        27 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~  106 (541)
                      .++|+.|++.|+.+.++.+++..+.+++..|..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            4555555555555555555555344555555555555555 555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH
Q 009183          107 AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL  180 (541)
Q Consensus       107 ~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  180 (541)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|++.  .+++.+|..|.||||+|+..|+.+++++|+
T Consensus        82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A           82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQ  153 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            555555555555555555555555555555555555544433  444444444444444444444444444444

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=6.1e-28  Score=211.85  Aligned_cols=153  Identities=28%  Similarity=0.324  Sum_probs=120.7

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC
Q 009183           60 GYFALQWAALNNFADIAQYIIDH-GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ  138 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~  138 (541)
                      |.|+||.|+..|+.++++.|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            45788888888888888888877 33777777788888888 77788888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 009183          139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA  215 (541)
Q Consensus       139 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  215 (541)
                      .+++++|++. |.+++.+|..|.||||+|+..|+.+++++|++. ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            8888877765 777777777788888888888888888888777 77777777788888888888888888777753

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=3.3e-29  Score=236.50  Aligned_cols=182  Identities=18%  Similarity=0.178  Sum_probs=134.1

Q ss_pred             CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHc
Q 009183           57 DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY  136 (541)
Q Consensus        57 d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~  136 (541)
                      +..|.||||.|+..++.+.++.|+++|++++.. ..|.||||.|+..|+.++++.|++.|++++.+|..|.||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            457999999999999999999999999999865 6789999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCC-cHHHHH--HHcCCHHHHHHHH
Q 009183          137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGC-TPLHWA--ALRGNVEACTVLV  213 (541)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~-tpLh~A--~~~g~~~~v~~Ll  213 (541)
                      |+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..|+.+++++|+
T Consensus        81 g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll  159 (239)
T 1ycs_B           81 GHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  159 (239)
T ss_dssp             TCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             CCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence            999999999987 999999999999999999999999999999999999999998876 999999  7889999999999


Q ss_pred             HcCCCCCCc-------ccCCCCCCHHHHHHhcCc
Q 009183          214 HAGTKQELT-------AKDKAGLTPTQLAYDKGH  240 (541)
Q Consensus       214 ~~g~~~~~~-------~~d~~g~t~l~~A~~~~~  240 (541)
                      ++|++.+..       ..|..+.++.+++.+.|.
T Consensus       160 ~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          160 GVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            998743321       226778899998888775

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.7e-28  Score=230.20  Aligned_cols=209  Identities=20%  Similarity=0.191  Sum_probs=149.3

Q ss_pred             CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 009183           23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAV  102 (541)
Q Consensus        23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~  102 (541)
                      +..|.|||+.|++.|+.+.++.+++. |.+++. +..|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhcc-CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            45689999999999999999999875 888875 4789999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC-cHHHHH--HHhCcHHHHHHH
Q 009183          103 RGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGR-SPLHWA--AYKGFADTIRLL  179 (541)
Q Consensus       103 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~L~~A--~~~~~~~~v~~L  179 (541)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |++++.++..|. ||||+|  +..|+.+++++|
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence            9999999999999999999999999999999999999999999987 999999998887 999999  888999999999


Q ss_pred             HhcCCCCCcc---------cCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----CCcccCCCCCCHHHHHH
Q 009183          180 LFRDASQGRQ---------DKDGCTPLHWAALRGNVEACTVLVHAGTKQ----ELTAKDKAGLTPTQLAY  236 (541)
Q Consensus       180 l~~g~~~~~~---------d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~----~~~~~d~~g~t~l~~A~  236 (541)
                      +++|++++..         |..+.+++++|...|.  +++.|.+.+...    .....++.|.+|..+..
T Consensus       159 l~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~  226 (239)
T 1ycs_B          159 YGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG  226 (239)
T ss_dssp             HHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred             HHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence            9999988765         5568899998888776  344444433210    01234555666665543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=4.9e-29  Score=249.40  Aligned_cols=219  Identities=14%  Similarity=0.060  Sum_probs=166.1

Q ss_pred             CCcchhhHHHHHHcCCHHHHHHHHHhcCC--CCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCC---CCCCCCCchHH
Q 009183           23 NQAAVTDVFSASAYGDFEKLRKFVEEDGA--SVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV---NATDNNGQTAL   97 (541)
Q Consensus        23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~---~~~~~~g~tpL   97 (541)
                      +.++.||||.|++.|+.++++.|++....  ..+..+..|.||||+||.+|+.++|++|+++|+++   +..+.+ .|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            34567999999999999999999876331  22344557889999999999999999999999762   222233 8999


Q ss_pred             HHHHHhCCHHHHHHHHhCCCCCCc--cccCCChHHHHHH-HcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHH
Q 009183           98 HWAAVRGSIAVADVLVQNGARVEA--ADVHGYRAVHVAA-QYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFAD  174 (541)
Q Consensus        98 ~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~l~~A~-~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~  174 (541)
                      |+|+..|+.+++++|+++|++++.  +|..|.||||+|+ ..|+.+++++|++. |.       .|.||||+|+..|+.+
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~-ga-------~~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PV-------MLAYAEIHEFEYGEKY  239 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HH-------HHHHHHHCTTTTTTTT
T ss_pred             HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC-CC-------ccchHHHHHHHCCCHH
Confidence            999999999999999999999887  8888999999999 99999999999974 32       2789999999999999


Q ss_pred             HHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHH---------------------------HHHHHHHcCCCC---CCccc
Q 009183          175 TIRLLLFRDASQGRQDKDGCTPLHWAALRGNVE---------------------------ACTVLVHAGTKQ---ELTAK  224 (541)
Q Consensus       175 ~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~---------------------------~v~~Ll~~g~~~---~~~~~  224 (541)
                      ++++|+++|++++..|.    +++.|+..|+.+                           .+++|++.+.-.   +....
T Consensus       240 vv~lL~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~  315 (376)
T 2aja_A          240 VNPFIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI  315 (376)
T ss_dssp             HHHHHHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSS
T ss_pred             HHHHHHhcCcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCC
Confidence            99999999887765542    444455444433                           444444422100   01122


Q ss_pred             CCCCCCHHHHHHhcCchHHHHHHHHhhhhc
Q 009183          225 DKAGLTPTQLAYDKGHRQVALYLSNAQHMH  254 (541)
Q Consensus       225 d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~  254 (541)
                      ...+.||+++|++.|+.+++++|++.+...
T Consensus       316 ~n~~~~~L~~A~~~g~~e~v~lLl~~~~v~  345 (376)
T 2aja_A          316 PGDANELLRLALRLGNQGACALLLSIPSVL  345 (376)
T ss_dssp             TTCCCHHHHHHHHHTCTTHHHHHTTSHHHH
T ss_pred             CCCccHHHHHHHHcCcHHHHHHHHcChHHH
Confidence            345678999999999999999999876543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=3.1e-26  Score=196.03  Aligned_cols=131  Identities=24%  Similarity=0.307  Sum_probs=64.5

Q ss_pred             CCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCC-CCcH
Q 009183           85 DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNE-GRSP  163 (541)
Q Consensus        85 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~t~  163 (541)
                      +++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|++. +.+++.+|.. |.||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTRP   81 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBCH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCCH
Confidence            334444444444444444444444444444444444444444444444444 444444444433 4444444444 4555


Q ss_pred             HHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183          164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT  217 (541)
Q Consensus       164 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  217 (541)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            555555555555555555555555555555555555555555555555555554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=4.6e-26  Score=194.96  Aligned_cols=134  Identities=27%  Similarity=0.312  Sum_probs=122.0

Q ss_pred             CCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccC-CCh
Q 009183           50 GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH-GYR  128 (541)
Q Consensus        50 ~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~-g~t  128 (541)
                      +.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.+|.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            56788889999999999999999999999999999999999999999999999 9999999999999999999988 899


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 009183          129 AVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS  185 (541)
Q Consensus       129 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  185 (541)
                      |||+|+..|+.+++++|++. +++++.+|..|.||||+|+..++.+++++|+++|+|
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999876 889999999999999999999999999999988875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=2.9e-26  Score=201.25  Aligned_cols=144  Identities=23%  Similarity=0.215  Sum_probs=94.3

Q ss_pred             ccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCh-HHHH
Q 009183           54 SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYR-AVHV  132 (541)
Q Consensus        54 ~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~l~~  132 (541)
                      +..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.+|..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            344567777888888888888888888777777777777778877775 77777777777777777777777777 7777


Q ss_pred             HHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHH
Q 009183          133 AAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHW  199 (541)
Q Consensus       133 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~  199 (541)
                      |+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||.+-
T Consensus        85 A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG  150 (156)
T ss_dssp             HHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence            7777777777777765 77777777777777777777777777777777777777777777776653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=7.1e-27  Score=210.89  Aligned_cols=159  Identities=16%  Similarity=0.148  Sum_probs=122.3

Q ss_pred             chhhHHHHHHcCCHHHHHHHHHhcCCCCccCC-CCCchHHHHHHHcCcH----HHHHHHHhCCCCCCCCCCCCchHHHHH
Q 009183           26 AVTDVFSASAYGDFEKLRKFVEEDGASVSRPD-GNGYFALQWAALNNFA----DIAQYIIDHGGDVNATDNNGQTALHWA  100 (541)
Q Consensus        26 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~----~iv~~Ll~~g~~~~~~~~~g~tpL~~A  100 (541)
                      +.++|+.|++.|+.+.++.++...   ++.++ ..|.||||+|+.+|+.    +++++|+++|++++.++..|.||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            457899999999999999988763   34444 6799999999999875    589999999999999999999999999


Q ss_pred             HHhCC------HHHHHHHHhCCCCCCccccCCC-hHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcH
Q 009183          101 AVRGS------IAVADVLVQNGARVEAADVHGY-RAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFA  173 (541)
Q Consensus       101 ~~~g~------~~~v~~Ll~~g~~~~~~d~~g~-t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~  173 (541)
                      +..|+      .+++++|+++|++++.+|..|. ||||+|+..+..+                             .+..
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~-----------------------------~~~~  133 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE-----------------------------NEMI  133 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCH-----------------------------HHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCCh-----------------------------hhHH
Confidence            99886      5778888888888888888888 8888887744321                             1223


Q ss_pred             HHHHHHHh-cCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183          174 DTIRLLLF-RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       174 ~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  216 (541)
                      +++++|++ +|++++.+|..|.||||+|+..|+.+++++|.+..
T Consensus       134 ~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          134 PLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             HHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            56666666 66666666666777777776666666666666554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=7.5e-26  Score=198.56  Aligned_cols=145  Identities=23%  Similarity=0.279  Sum_probs=120.8

Q ss_pred             CCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCc-HHH
Q 009183           87 NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRS-PLH  165 (541)
Q Consensus        87 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~L~  165 (541)
                      +..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ .|+.+++++|++. |.+++.+|..|.| |||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVH   83 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHHH
Confidence            455678999999999999999999999999999999999999999985 8999999999986 9999999999999 999


Q ss_pred             HHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHH
Q 009183          166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA  235 (541)
Q Consensus       166 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A  235 (541)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+  +++.+|..|.||.+-+
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga--~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG--GTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------------
T ss_pred             HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC--CCCccCcCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999998  7788999999987744

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=3.6e-26  Score=206.25  Aligned_cols=154  Identities=16%  Similarity=0.078  Sum_probs=112.0

Q ss_pred             chHHHHHHHhCCHHHHHHHHhCCCCCCccc-cCCChHHHHHHHcCCH----HHHHHHHHhcCCCcccCCCCCCcHHHHHH
Q 009183           94 QTALHWAAVRGSIAVADVLVQNGARVEAAD-VHGYRAVHVAAQYGQT----SFLNHIVAKYHADYDASDNEGRSPLHWAA  168 (541)
Q Consensus        94 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~l~~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~  168 (541)
                      .++|+.|++.|+.+.++.+++.+.  +.++ ..|.||||+|+..|+.    +++++|+++ |++++.+|..|.||||+|+
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHH
Confidence            345555555555555555555442  2233 4455555555555543    255555544 5556666666666666665


Q ss_pred             HhCc------HHHHHHHHhcCCCCCcccCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCCCcccCCCCCCHHHHH
Q 009183          169 YKGF------ADTIRLLLFRDASQGRQDKDGC-TPLHWAALRG-----NVEACTVLVH-AGTKQELTAKDKAGLTPTQLA  235 (541)
Q Consensus       169 ~~~~------~~~v~~Ll~~g~~~~~~d~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~g~~~~~~~~d~~g~t~l~~A  235 (541)
                      ..++      .+++++|+++|++++.+|..|. ||||+|+..+     +.+++++|++ +|+  +++.+|..|+|||++|
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga--d~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL--QLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC--CTTCCCTTSCCHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC--CCcccCCCCCCHHHHH
Confidence            5554      5789999999999999999999 9999999844     4579999999 998  7889999999999999


Q ss_pred             HhcCchHHHHHHHHhhh
Q 009183          236 YDKGHRQVALYLSNAQH  252 (541)
Q Consensus       236 ~~~~~~~i~~~L~~~~~  252 (541)
                      ++.|+.+++++|.+...
T Consensus       162 ~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          162 KRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             HTTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            99999999999988754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=5.5e-24  Score=181.97  Aligned_cols=123  Identities=29%  Similarity=0.340  Sum_probs=68.3

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc
Q 009183           93 GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF  172 (541)
Q Consensus        93 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~  172 (541)
                      +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. +++++.+|..|.||||+|+..|+
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~   92 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGH   92 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCC
Confidence            44555555555555555555555555555555555555555555555555555543 45555555555555555555555


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183          173 ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       173 ~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  216 (541)
                      .+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|
T Consensus        93 ~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           93 LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            66666666666666666666666666666666666666665543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=4e-24  Score=182.84  Aligned_cols=125  Identities=29%  Similarity=0.387  Sum_probs=74.0

Q ss_pred             CCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcC
Q 009183           58 GNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYG  137 (541)
Q Consensus        58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g  137 (541)
                      ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            34555666666666666666666666665555555666666666666666666666666666555556666666666666


Q ss_pred             CHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 009183          138 QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD  183 (541)
Q Consensus       138 ~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  183 (541)
                      +.+++++|++. +++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        92 ~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            66666655554 5555555666666666666666666666665543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=8.4e-27  Score=233.18  Aligned_cols=194  Identities=14%  Similarity=0.082  Sum_probs=129.0

Q ss_pred             hhHHHHHH-cCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCC---CCCCCCCchHHHHHHHh
Q 009183           28 TDVFSASA-YGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV---NATDNNGQTALHWAAVR  103 (541)
Q Consensus        28 ~~L~~A~~-~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~---~~~~~~g~tpL~~A~~~  103 (541)
                      +.++.|+. .++.+.++.+++.        +.++.||||+|+..|+.++|++|+++|+..   +..+..|.||||+|+..
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~--------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~  138 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKK--------GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN  138 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHH--------TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHc--------CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence            34444444 3555555555543        234458888888888888888888777632   22334567788888888


Q ss_pred             CCHHHHHHHHhCCCCC---CccccCCChHHHHHHHcCCHHHHHHHHHhcCCCccc--CCCCCCcHHHHHH-HhCcHHHHH
Q 009183          104 GSIAVADVLVQNGARV---EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA--SDNEGRSPLHWAA-YKGFADTIR  177 (541)
Q Consensus       104 g~~~~v~~Ll~~g~~~---~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~--~d~~g~t~L~~A~-~~~~~~~v~  177 (541)
                      |+.+++++|+++|+++   +..+.. .||||+|+..|+.+++++|++. |.+++.  .|..|.||||+|+ ..|+.++++
T Consensus       139 G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          139 GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            8888888888888652   222223 7788888888888888887765 666665  6777778888888 888888888


Q ss_pred             HHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHH
Q 009183          178 LLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVA  244 (541)
Q Consensus       178 ~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~  244 (541)
                      +|++.|+       .|.||||+|+..|+.+++++|+++|+  +++.+|    ++++.|+.+|+.+++
T Consensus       217 ~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga--~~~~~~----~~l~~A~~~g~~~vv  270 (376)
T 2aja_A          217 FLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVN--RLKEMH----DAFKLSNPDGVFDLV  270 (376)
T ss_dssp             HHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHH--HHHHHH----TTTTTTSSSSCCCCS
T ss_pred             HHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCc--cccccc----HHHHHHHHCCChhhh
Confidence            8877653       26778888888888888888887776  333333    356666666766643

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=7.1e-24  Score=178.31  Aligned_cols=124  Identities=40%  Similarity=0.637  Sum_probs=60.4

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCc
Q 009183           93 GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGF  172 (541)
Q Consensus        93 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~  172 (541)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCh
Confidence            33444444444444444444444444444444444444444444444444444433 44444444445555555555555


Q ss_pred             HHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183          173 ADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT  217 (541)
Q Consensus       173 ~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  217 (541)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            555555555555555555555555555555555555555555554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.1e-23  Score=177.23  Aligned_cols=126  Identities=38%  Similarity=0.607  Sum_probs=113.0

Q ss_pred             CCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCC
Q 009183           59 NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQ  138 (541)
Q Consensus        59 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~  138 (541)
                      +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            58899999999999999999999999988888889999999999999999999999999998888899999999999999


Q ss_pred             HHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 009183          139 TSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS  185 (541)
Q Consensus       139 ~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  185 (541)
                      .+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        81 ~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999988876 888888888999999999999999999999988875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=9.6e-24  Score=190.33  Aligned_cols=140  Identities=26%  Similarity=0.320  Sum_probs=99.6

Q ss_pred             CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCchHHHHHH
Q 009183           23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD-NNGQTALHWAA  101 (541)
Q Consensus        23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~-~~g~tpL~~A~  101 (541)
                      +..+.||||.|++.|+.+.++.+++  +.+++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3466777777777777777777776  66777777777777777777777777777777777777776 66777777777


Q ss_pred             HhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh
Q 009183          102 VRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF  181 (541)
Q Consensus       102 ~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  181 (541)
                      ..|+.+++++|+++|++++.+|..|.||||+|++.++.                  ..+.++|++|+..|..+++++|.+
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            77777777777777777777777777777777653221                  234567777777777777776654


Q ss_pred             c
Q 009183          182 R  182 (541)
Q Consensus       182 ~  182 (541)
                      +
T Consensus       181 ~  181 (183)
T 3deo_A          181 Q  181 (183)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=4.9e-24  Score=182.51  Aligned_cols=125  Identities=22%  Similarity=0.323  Sum_probs=72.5

Q ss_pred             cCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHH
Q 009183           55 RPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA  134 (541)
Q Consensus        55 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~  134 (541)
                      .+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666666666555555555555555


Q ss_pred             HcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH
Q 009183          135 QYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL  180 (541)
Q Consensus       135 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  180 (541)
                      ..|+.+++++|++. |++++.+|..|.||||+|+..+..+++++|.
T Consensus        85 ~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           85 KNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             HTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             HcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence            55555555555543 5555555555555555555555444444443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=4.8e-24  Score=182.58  Aligned_cols=125  Identities=26%  Similarity=0.387  Sum_probs=62.9

Q ss_pred             CCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHH
Q 009183           88 ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA  167 (541)
Q Consensus        88 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A  167 (541)
                      .++..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDA   83 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHHH
Confidence            3444555555555555555555555555555555555555555555555555555554443 444444444445555555


Q ss_pred             HHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHH
Q 009183          168 AYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLV  213 (541)
Q Consensus       168 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  213 (541)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|.
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~  129 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE  129 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence            5555555555555445554444444555555544444444444433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=1.3e-23  Score=189.47  Aligned_cols=140  Identities=25%  Similarity=0.265  Sum_probs=122.5

Q ss_pred             CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccc-cCCChHHHHHHH
Q 009183           57 DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD-VHGYRAVHVAAQ  135 (541)
Q Consensus        57 d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~l~~A~~  135 (541)
                      +.+|.||||+|+..|+.++++.|++ |++++.++..|.||||+|+..|+.+++++|+++|++++.+| ..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4578899999999999999999999 99999999999999999999999999999999999999888 889999999999


Q ss_pred             cCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 009183          136 YGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA  215 (541)
Q Consensus       136 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  215 (541)
                      .|+.+++++|++. |++++.+|..|.||||+|+..++.                 ..+.+||++|+..|+.+++++|.++
T Consensus       120 ~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          120 YVRPEVVEALVEL-GADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            9999999988876 888888999999999998875432                 3467888888888888888888754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=3.7e-23  Score=195.48  Aligned_cols=109  Identities=29%  Similarity=0.350  Sum_probs=60.2

Q ss_pred             cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCC-CCCchHHHHHHHh
Q 009183           25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD-NNGQTALHWAAVR  103 (541)
Q Consensus        25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~-~~g~tpL~~A~~~  103 (541)
                      .|.||||.|++.|+.+.++.|++  +.++|.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            44555555555555555555554  45555555555555555555555555555555555555554 4455555555555


Q ss_pred             CCHHHHHHHHhCCCCCCccccCCChHHHHHHH
Q 009183          104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQ  135 (541)
Q Consensus       104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~  135 (541)
                      |+.+++++|+++|++++.+|..|.||||+|+.
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            55555555555555555555555555555543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=4.3e-23  Score=195.04  Aligned_cols=140  Identities=25%  Similarity=0.263  Sum_probs=117.9

Q ss_pred             CCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccc-cCCChHHHHHHHc
Q 009183           58 GNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD-VHGYRAVHVAAQY  136 (541)
Q Consensus        58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~l~~A~~~  136 (541)
                      .+|.||||+|+..|+.++++.|++ |++++.++..|.||||+|+..|+.+++++|+++|++++.+| ..|.||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            468899999999999999999998 88899888889999999999999999999999999998888 7788888888888


Q ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183          137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  216 (541)
                      |+.+++++|++. |++++.+|..|.||||+|+..++                 ...+.||||+|+..|+.+++++|++++
T Consensus       122 g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          122 VRPEVVEALVEL-GADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            888888888876 88888888888888888875321                 245678888888888888888888764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=4.9e-22  Score=193.50  Aligned_cols=142  Identities=21%  Similarity=0.230  Sum_probs=125.5

Q ss_pred             CCCchHHHHHHHhCCHHHHHHHHhCCCCCCc------cccCCChHHHHHHHc---CCHHHHHHHHHhcCCCcccCCCCCC
Q 009183           91 NNGQTALHWAAVRGSIAVADVLVQNGARVEA------ADVHGYRAVHVAAQY---GQTSFLNHIVAKYHADYDASDNEGR  161 (541)
Q Consensus        91 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~------~d~~g~t~l~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~  161 (541)
                      ....++|+.|+..|+.+.++.|++.|++++.      +|..|.||||+|+..   |+.+++++|++. |++++.+|..|.
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~  227 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGN  227 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCC
Confidence            3456889999999999999999999999988      689999999999997   899999999987 999999999999


Q ss_pred             cHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCch
Q 009183          162 SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHR  241 (541)
Q Consensus       162 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~  241 (541)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++        .|.|||++|++.|+.
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHHhcCCc
Confidence            999999999999999999999999999999999999999999999999999999862        588999999998874

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=197.86  Aligned_cols=140  Identities=24%  Similarity=0.206  Sum_probs=125.3

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhCCCCCCC------CCCCCchHHHHHHHh---CCHHHHHHHHhCCCCCCccccCCChHH
Q 009183           60 GYFALQWAALNNFADIAQYIIDHGGDVNA------TDNNGQTALHWAAVR---GSIAVADVLVQNGARVEAADVHGYRAV  130 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~------~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~d~~g~t~l  130 (541)
                      +.++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++.+|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            45789999999999999999999999998      688999999999997   899999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCH
Q 009183          131 HVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNV  206 (541)
Q Consensus       131 ~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~  206 (541)
                      |+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++      .|.||||+|+..|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            999999999999999986 999999999999999999999999999999998876      578999999988864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=5.4e-23  Score=191.52  Aligned_cols=129  Identities=23%  Similarity=0.228  Sum_probs=60.5

Q ss_pred             CCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhC-CCCCCccccCCChHHHHHHHc
Q 009183           58 GNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQN-GARVEAADVHGYRAVHVAAQY  136 (541)
Q Consensus        58 ~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~l~~A~~~  136 (541)
                      .+|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence            3445555555555555555555555555555555555555555555555555555554 555555554444444444444


Q ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC
Q 009183          137 GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQG  187 (541)
Q Consensus       137 g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  187 (541)
                      |+.+++++|++. |++++.+|..|.||||+|+..+..++++.|++.|+..+
T Consensus       151 ~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          151 GYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             TCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             CCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            444444444443 44444444444444444444444444444444444433

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=2.5e-22  Score=168.38  Aligned_cols=107  Identities=26%  Similarity=0.363  Sum_probs=42.1

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCH
Q 009183           60 GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT  139 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~  139 (541)
                      |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~   86 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   86 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Confidence            33444444444444444444444444444443444444444444444444444444444333333333333333333333


Q ss_pred             HHHHHHHHhcCCCcccCCCCCCcHHHHH
Q 009183          140 SFLNHIVAKYHADYDASDNEGRSPLHWA  167 (541)
Q Consensus       140 ~~v~~Ll~~~~~~~~~~d~~g~t~L~~A  167 (541)
                      +++++|++. +++++.+|..|.||||+|
T Consensus        87 ~~v~~Ll~~-ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           87 SCVKLLLSK-GADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHHHHHHT-TCCTTCCCTTSCCHHHHC
T ss_pred             HHHHHHHHc-CCCCCCcCCCCCCHHHHh
Confidence            333333332 333333333333333333

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=2.8e-22  Score=168.11  Aligned_cols=113  Identities=23%  Similarity=0.367  Sum_probs=105.8

Q ss_pred             CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 009183           23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAV  102 (541)
Q Consensus        23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~  102 (541)
                      +..+.++|+.|+..|+.+.++.+++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            45678999999999999999999975 88999999999999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCCccccCCChHHHHHHHc
Q 009183          103 RGSIAVADVLVQNGARVEAADVHGYRAVHVAAQY  136 (541)
Q Consensus       103 ~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~  136 (541)
                      .|+.+++++|+++|++++.+|..|.||+|+|...
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            9999999999999999999999999999999543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=9.1e-23  Score=189.97  Aligned_cols=129  Identities=21%  Similarity=0.261  Sum_probs=110.4

Q ss_pred             CCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHH
Q 009183           90 DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY  169 (541)
Q Consensus        90 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~  169 (541)
                      +..|.||||+|+..|+.++++.|++.|++++.+|..|.||||+|+..|+.+++++|++..+++++.+|..|.||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999876688999999999999999999


Q ss_pred             hCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183          170 KGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK  218 (541)
Q Consensus       170 ~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  218 (541)
                      .|+.+++++|+++|++++.+|.+|.||||+|+..|+.++++.|++.|+.
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            9999999999999999999999999999999999999999999988873

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1.5e-20  Score=180.80  Aligned_cols=191  Identities=18%  Similarity=0.177  Sum_probs=133.1

Q ss_pred             CCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCC-CchHHHHHHHhCCHHHHHHHHhC-CCCCCccccCCChHHHHH
Q 009183           56 PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN-GQTALHWAAVRGSIAVADVLVQN-GARVEAADVHGYRAVHVA  133 (541)
Q Consensus        56 ~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~l~~A  133 (541)
                      .|..+.+.++.+...|+..+.+++...-......... +....+    ....-..+++... .......+....++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            4667888888888888877776654332221110111 111111    1111111222221 112222233445788888


Q ss_pred             HHcCCHHHHHHHHHhcCCC------cccCCCCCCcHHHHHHHh---CcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcC
Q 009183          134 AQYGQTSFLNHIVAKYHAD------YDASDNEGRSPLHWAAYK---GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRG  204 (541)
Q Consensus       134 ~~~g~~~~v~~Ll~~~~~~------~~~~d~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g  204 (541)
                      ++.|+.+.+..+++. |.+      ++..|..|.||||+|+..   |+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus       138 ~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g  216 (278)
T 1dcq_A          138 VKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD  216 (278)
T ss_dssp             HHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTT
T ss_pred             hhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcC
Confidence            888888888888766 666      444578888999999988   7889999999999999988888999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhh
Q 009183          205 NVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHM  253 (541)
Q Consensus       205 ~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~  253 (541)
                      +.+++++|+++|+  +++.+|..|.|||++|++.|+.+++++|+++++.
T Consensus       217 ~~~~v~~Ll~~ga--d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          217 NAECLKLLLRGKA--SIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             CHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCC--CCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999887  6778888999999999999999999998887764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1.3e-20  Score=187.62  Aligned_cols=149  Identities=22%  Similarity=0.234  Sum_probs=106.4

Q ss_pred             CCCCCchHHHHHHHh-CCHHHHHHHHhCCCCCCccc--cCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHH
Q 009183           89 TDNNGQTALHWAAVR-GSIAVADVLVQNGARVEAAD--VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLH  165 (541)
Q Consensus        89 ~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~d--~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~  165 (541)
                      .+..+.|+||.|+.. |+.++++.|+++|++++.++  ..|.||||+|+..|+.+++++|++. |++++.+|..|.||||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLH  273 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHH
Confidence            344567888888888 88888888888888888877  7788888888888888888888876 8888888888888888


Q ss_pred             HHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcccCCCCCCHHHHHHhc
Q 009183          166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ-ELTAKDKAGLTPTQLAYDK  238 (541)
Q Consensus       166 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~-~~~~~d~~g~t~l~~A~~~  238 (541)
                      +|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++++... +....+..+.|+++++...
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888776421 2334556778888887654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=5.6e-20  Score=176.86  Aligned_cols=190  Identities=17%  Similarity=0.156  Sum_probs=143.8

Q ss_pred             CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCc--cCCCCCchHHHHHHHcCcHHHHHHHHhCCC-CCCCCCCCCchHHH
Q 009183           22 DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVS--RPDGNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALH   98 (541)
Q Consensus        22 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~--~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~~~g~tpL~   98 (541)
                      -|..+.+.++.+...||.... .+++..-....  .++.. ....+    ....-..+++..... ..+.......++|+
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n-~i~e~~l~~~~~~kP~~~-s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~  135 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFN-EIMECCLPSEDPVKPNPG-SDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLC  135 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHH-HHHTTTCCSSSCCSCCTT-CCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHH-HHHHhhCChhhcCCCCCC-CCHHH----HHHHHHHHHHHhhcccccccccchhhhhhh
Confidence            344566788888888886554 44443221111  11111 11111    111112223332221 11222223568999


Q ss_pred             HHHHhCCHHHHHHHHhCCCCC------CccccCCChHHHHHHHc---CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHH
Q 009183           99 WAAVRGSIAVADVLVQNGARV------EAADVHGYRAVHVAAQY---GQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY  169 (541)
Q Consensus        99 ~A~~~g~~~~v~~Ll~~g~~~------~~~d~~g~t~l~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~  169 (541)
                      .|+..|+.+.++.+++.|+++      +..|..|.||||+|+..   |+.+++++|++. |++++.+|..|.||||+|+.
T Consensus       136 ~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~  214 (278)
T 1dcq_A          136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCL  214 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHH
T ss_pred             hHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHH
Confidence            999999999999999999985      44588999999999999   899999999987 99999999999999999999


Q ss_pred             hCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183          170 KGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK  218 (541)
Q Consensus       170 ~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  218 (541)
                      .|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|+.
T Consensus       215 ~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          215 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999873

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=1.9e-20  Score=186.46  Aligned_cols=126  Identities=21%  Similarity=0.299  Sum_probs=88.8

Q ss_pred             ccCCChHHHHHHHc-CCHHHHHHHHHhcCCCcccCC--CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHH
Q 009183          123 DVHGYRAVHVAAQY-GQTSFLNHIVAKYHADYDASD--NEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHW  199 (541)
Q Consensus       123 d~~g~t~l~~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~  199 (541)
                      +..+.|+||.|+.. |+.++++.|++. |++++..+  ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH  274 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            34455677777777 777777777754 67777666  667777777777777777777777777777777777777777


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183          200 AALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ  251 (541)
Q Consensus       200 A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~  251 (541)
                      |+..|+.+++++|+++|+  +++.+|..|.|||++|++.|+.+++++|+..+
T Consensus       275 A~~~g~~~~v~~LL~~Ga--d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGA--DLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHCcC--CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            777777777777777776  55666777777777777777777777776654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=7.5e-20  Score=144.97  Aligned_cols=89  Identities=35%  Similarity=0.579  Sum_probs=55.3

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCH
Q 009183           60 GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT  139 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~  139 (541)
                      |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            55666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHh
Q 009183          140 SFLNHIVAK  148 (541)
Q Consensus       140 ~~v~~Ll~~  148 (541)
                      +++++|++.
T Consensus        82 ~~~~~Ll~~   90 (93)
T 1n0q_A           82 EVVKLLLEA   90 (93)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            666665543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=2.4e-19  Score=142.05  Aligned_cols=93  Identities=35%  Similarity=0.549  Sum_probs=88.1

Q ss_pred             cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhC
Q 009183           25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRG  104 (541)
Q Consensus        25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g  104 (541)
                      +|.||||.|+..|+.+.++.|++. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            378999999999999999999875 8999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCC
Q 009183          105 SIAVADVLVQNGAR  118 (541)
Q Consensus       105 ~~~~v~~Ll~~g~~  118 (541)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999975

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=7.6e-20  Score=151.16  Aligned_cols=107  Identities=30%  Similarity=0.411  Sum_probs=53.5

Q ss_pred             CCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHH
Q 009183           56 PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQ  135 (541)
Q Consensus        56 ~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~  135 (541)
                      +|.+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555544445555555554


Q ss_pred             cCCHHHHHHHHHhcCCCcccCCCCCCcH
Q 009183          136 YGQTSFLNHIVAKYHADYDASDNEGRSP  163 (541)
Q Consensus       136 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  163 (541)
                      .|+.+++++|+++ |++++.++..|.+|
T Consensus        85 ~~~~~~~~~Ll~~-ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           85 NGHHEIVKLLDAK-GADVNARSWGSSHH  111 (115)
T ss_dssp             TTCHHHHHHHHTT-SSSHHHHSCCCC--
T ss_pred             CCCHHHHHHHHHc-CCCCCcCCcccccc
Confidence            4444444444433 44444444444443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=2.2e-19  Score=148.38  Aligned_cols=106  Identities=31%  Similarity=0.484  Sum_probs=54.8

Q ss_pred             ccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHH
Q 009183          123 DVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAAL  202 (541)
Q Consensus       123 d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~  202 (541)
                      |..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+.
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            44444555555555555555444443 44445555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHcCCCCCCcccCCCCCCH
Q 009183          203 RGNVEACTVLVHAGTKQELTAKDKAGLTP  231 (541)
Q Consensus       203 ~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~  231 (541)
                      .|+.+++++|+++|+  +++.++..|.+|
T Consensus        85 ~~~~~~~~~Ll~~ga--~~n~~~~~~~~~  111 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGA--DVNARSWGSSHH  111 (115)
T ss_dssp             TTCHHHHHHHHTTSS--SHHHHSCCCC--
T ss_pred             CCCHHHHHHHHHcCC--CCCcCCcccccc
Confidence            555555555555554  444455555544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=1.4e-17  Score=136.34  Aligned_cols=93  Identities=30%  Similarity=0.372  Sum_probs=65.3

Q ss_pred             CccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHH
Q 009183           53 VSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHV  132 (541)
Q Consensus        53 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~  132 (541)
                      ....|.+|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            34456677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHcCCHHHHHHH
Q 009183          133 AAQYGQTSFLNHI  145 (541)
Q Consensus       133 A~~~g~~~~v~~L  145 (541)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            7777777776654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=1.7e-16  Score=129.69  Aligned_cols=97  Identities=25%  Similarity=0.392  Sum_probs=85.2

Q ss_pred             CCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCc
Q 009183           15 IPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQ   94 (541)
Q Consensus        15 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~   94 (541)
                      .+....+.+.++.++||.|+..|+.+.++.|++. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        13 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~   91 (110)
T 2zgd_A           13 LVPRGSHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK   91 (110)
T ss_dssp             ---------CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCcccccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Confidence            3445556788899999999999999999999975 899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhCCHHHHHHH
Q 009183           95 TALHWAAVRGSIAVADVL  112 (541)
Q Consensus        95 tpL~~A~~~g~~~~v~~L  112 (541)
                      ||||+|+..|+.+++++|
T Consensus        92 tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           92 TAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CHHHHHHHHTCHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHh
Confidence            999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	541
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-33
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-26
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-18
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-16
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.004
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-12
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-10
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	9e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	8e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	8e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (326), Expect = 1e-33
 Identities = 61/226 (26%), Positives = 95/226 (42%), Gaps = 4/226 (1%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           AS  G    ++  ++  GAS +  +      L  AA     ++A+Y++ +   VNA   +
Sbjct: 7   ASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 65

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
            QT LH AA  G   +  +L++N A    A   G+  +H+AA+ G        + +  A 
Sbjct: 66  DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVET-VLALLEKEAS 124

Query: 153 YDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
                 +G +PLH AA  G      LLL RDA      K+G TPLH A    N++   +L
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 213 VHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHW 258
           +  G      +    G TP  +A  +   +VA  L           
Sbjct: 185 LPRGG--SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 228

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 3e-27
 Identities = 60/215 (27%), Positives = 93/215 (43%), Gaps = 4/215 (1%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A+ YG        +E   A  +    NG   L  A  +N  DI + ++  GG  ++   N
Sbjct: 139 AAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 197

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
           G T LH AA +  + VA  L+Q G    A  V G   +H+AAQ G    +  ++    A+
Sbjct: 198 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL-SKQAN 256

Query: 153 YDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
            +  +  G +PLH  A +G      +L+          + G TPLH A+  GN+    V 
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI--KLVK 314

Query: 213 VHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
                + ++ AK K G +P   A  +GH  +   L
Sbjct: 315 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 349

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 3e-27
 Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 7/242 (2%)

Query: 6   IEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQ 65
            E++   +A PN    +    +     A  + + + + K +   G S   P  NGY  L 
Sbjct: 148 AELLLERDAHPNAAGKNGLTPL---HVAVHHNNLD-IVKLLLPRGGSPHSPAWNGYTPLH 203

Query: 66  WAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
            AA  N  ++A+ ++ +GG  NA    G T LH AA  G   +  +L+   A     +  
Sbjct: 204 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 263

Query: 126 GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
           G   +H+ AQ G    +  ++ K+    DA+   G +PLH A++ G    ++ LL   A 
Sbjct: 264 GLTPLHLVAQEGHVP-VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 322

Query: 186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL 245
              + K G +PLH AA +G+ +  T+L+  G           G TP  +A   G+  V  
Sbjct: 323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA--SPNEVSSDGTTPLAIAKRLGYISVTD 380

Query: 246 YL 247
            L
Sbjct: 381 VL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 1e-25
 Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 2/177 (1%)

Query: 55  RPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQ 114
                G   L  AA    A++   ++    + N  + +G T LH  A  G + VADVL++
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

Query: 115 NGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFAD 174
           +G  V+A    GY  +HVA+ YG    +  ++     D +A    G SPLH AA +G  D
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-DVNAKTKLGYSPLHQAAQQGHTD 344

Query: 175 TIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL-VHAGTKQELTAKDKAGLT 230
            + LLL   AS      DG TPL  A   G +    VL V       +   DK  ++
Sbjct: 345 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 1e-20
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 36/186 (19%)

Query: 95  TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYD 154
           T LH A+  G + +   L+Q GA    ++V     +H+AA+ G T    +++ +  A  +
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL-QNKAKVN 60

Query: 155 ASDNEGRSPLHWAAYKGFADTIRLLL---------------------------------F 181
           A   + ++PLH AA  G  + ++LLL                                  
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 182 RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHR 241
           ++ASQ    K G TPLH AA  G V    +L+         A  K GLTP  +A    + 
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA--HPNAAGKNGLTPLHVAVHHNNL 178

Query: 242 QVALYL 247
            +   L
Sbjct: 179 DIVKLL 184

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 9e-16
 Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 1/132 (0%)

Query: 129 AVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGR 188
            +HVA+  G    + +++ +  A  + S+ +  +PLH AA  G  +  + LL   A    
Sbjct: 3   PLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 189 QDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLS 248
           + KD  TPLH AA  G+     +L+       L                     +AL   
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 249 NAQHMHRNHWGD 260
            A        G 
Sbjct: 122 EASQACMTKKGF 133

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 3e-15
 Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 163 PLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELT 222
           PLH A++ G    ++ LL R AS    +    TPLH AA  G+ E    L+      ++ 
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA--KVN 60

Query: 223 AKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKIC 263
           AK K   TP   A   GH  +   L                
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT 101

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 2e-12
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 5/160 (3%)

Query: 6   IEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQ 65
            E+V+   +        N++ +T +   +  G    +   + + G  V      GY  L 
Sbjct: 244 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP-VADVLIKHGVMVDATTRMGYTPLH 302

Query: 66  WAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
            A+      + ++++ H  DVNA    G + LH AA +G   +  +L++NGA        
Sbjct: 303 VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD 362

Query: 126 GYRAVHVAAQYGQTS---FLNHIVAKYHADYDASDNEGRS 162
           G   + +A + G  S    L  +  +  +    SD    S
Sbjct: 363 GTTPLAIAKRLGYISVTDVLKVVTDET-SFVLVSDKHRMS 401

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-26
 Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 4/218 (1%)

Query: 30  VFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
           V + +  G  E+L++ +  D +  +R D +   AL WA      +I ++++  G  VN  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY 149
           D+ G + LH AA  G   +   L+  GA+V A + +G   +H AA   +      ++ + 
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EG 125

Query: 150 HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEAC 209
            A+ DA D+   + +H AA KG    I +LL+  AS   QD +G TPLH A     VE  
Sbjct: 126 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA 185

Query: 210 TVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
            +LV  G    +  ++K   TP Q+A   G   +   +
Sbjct: 186 KLLVSQGA--SIYIENKEEKTPLQVA-KGGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 4e-18
 Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA V+  + NG   L +AA  N  +IA  +++ G + +A D+   TA+H AA +G++ + 
Sbjct: 93  GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 152

Query: 110 DVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAY 169
            +L+   A     D  G   +H+A    +      +V    A     + E ++PL  A  
Sbjct: 153 HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV-SQGASIYIENKEEKTPLQVAK- 210

Query: 170 KGFADTIRLLL 180
            G    ++ ++
Sbjct: 211 GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 2e-14
 Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 36/191 (18%)

Query: 64  LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD 123
              A      ++ + I+        TD + +TALHWA   G                   
Sbjct: 8   CNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHT----------------- 50

Query: 124 VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD 183
                             +   + +     +  D+ G SPLH AA  G  + ++ LL + 
Sbjct: 51  -----------------EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 93

Query: 184 ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           A     +++GCTPLH+AA +   E   +L+  G      AKD    T    A  KG+ ++
Sbjct: 94  AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA--NPDAKDHYEATAMHRAAAKGNLKM 151

Query: 244 ALYLSNAQHMH 254
              L   +   
Sbjct: 152 IHILLYYKAST 162

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 2e-21
 Identities = 51/197 (25%), Positives = 75/197 (38%), Gaps = 15/197 (7%)

Query: 35  AYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVN------- 87
           A     KL K     GA V+  D  G+ A   AA+       +++   G +VN       
Sbjct: 80  AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139

Query: 88  ---ATDNNGQTALHWAAVRGSIAVADVLV-QNGARVEAADVHGYRAVHVAAQYGQTSFLN 143
                   G TAL  AA +G + V  +L+ + GA V A D  G  A+  A      S + 
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199

Query: 144 HIVA---KYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD-ASQGRQDKDGCTPLHW 199
            I      + AD +     G++PL  A  K     ++ LL ++       D DG T L  
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

Query: 200 AALRGNVEACTVLVHAG 216
           A      +   +L   G
Sbjct: 260 AVELKLKKIAELLCKRG 276

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 4e-20
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 53  VSRPDGNGYFALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAAVRGSI----A 107
             R    G  AL  AA     ++ + ++D  G DVNA DN G+ AL  A +        A
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 108 VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWA 167
           +  +L+ +GA V      G   + +A +      +  ++ + H + + +D++G++ L  A
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

Query: 168 AYKGFADTIRLLLFRDASQGRQD 190
                     LL  R AS    D
Sbjct: 261 VELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 3e-19
 Identities = 56/265 (21%), Positives = 96/265 (36%), Gaps = 50/265 (18%)

Query: 31  FSASAYGDFEKLRKFVEEDGASV-SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT 89
             A    D + +++ +E  GA+V  + +  G+  L  A   +  DI + ++ HG D    
Sbjct: 10  IKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 90  DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK- 148
             NG T    AA+ GS+ +  + +  GA V   D +G+ A   AA YG+   L  +  + 
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 149 --------YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD----------------- 183
                      D +     G + L  AA KG  + +++LL                    
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188

Query: 184 ---------------------ASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELT 222
                                A    + + G TPL  A  + ++     L+      E+ 
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE-HIEIN 247

Query: 223 AKDKAGLTPTQLAYDKGHRQVALYL 247
             D  G T   LA +   +++A  L
Sbjct: 248 DTDSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 5e-17
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)

Query: 9   VSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAA 68
           +    A  N   N  + A+     +S   D E +   + + GA V+     G   L  A 
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227

Query: 69  LNNFADIAQYIIDHGG-DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADV 124
                 + Q +++    ++N TD++G+TAL  A       +A++L + GA  +  D+
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 1/72 (1%)

Query: 192 DGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
           +    L  A    +V+    L+  G       +++ G TP   A       +   L    
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 252 HMHRNHWGDKIC 263
                   +   
Sbjct: 63  ADPVLRKKNGAT 74

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 89.6 bits (221), Expect = 4e-20
 Identities = 28/221 (12%), Positives = 50/221 (22%), Gaps = 21/221 (9%)

Query: 48  EDGASVSRPDGNGYFALQWAALNNFADIAQYI---IDHGGDVNATDNNGQTALHWAAVRG 104
           +  +   +           AA+   +     +   +     V         A   AA  G
Sbjct: 78  QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 137

Query: 105 SIAVADVLVQNGARVEAADV--HGYRAVHVAAQYGQTSFLNHIVAK--YHADYDASDNEG 160
            + V + L +       A +    Y A  +AA+ G    LN +       A         
Sbjct: 138 HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 197

Query: 161 RSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALR-------GNVEACTVLV 213
            +    A  +G  + I  LL         +                       E      
Sbjct: 198 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFK 257

Query: 214 HAGTKQELTAKDKA-------GLTPTQLAYDKGHRQVALYL 247
            +          K+        L       D+       +L
Sbjct: 258 LSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL 298

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 85.7 bits (211), Expect = 8e-19
 Identities = 29/233 (12%), Positives = 62/233 (26%), Gaps = 25/233 (10%)

Query: 42  LRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD----------- 90
            + F+  +  S+          +      N   + Q +  +    N              
Sbjct: 28  FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKG 87

Query: 91  NNGQTALHWAAVRGSIAVADV---LVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVA 147
              +     AA+ G  +  D    L+ +   V+      Y+A  +AA+ G    LN +  
Sbjct: 88  IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC- 146

Query: 148 KYHADYDASD--NEGRSPLHWAAYKGFADTIRLLLFRDA---SQGRQDKDGCTPLHWAAL 202
           +       +    E       AA  G    +  L        +   Q ++       A  
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 206

Query: 203 RGNVEACTVLVHAGTKQELTAKDKA-----GLTPTQLAYDKGHRQVALYLSNA 250
           RG+      L+            +       + P    +    +++      +
Sbjct: 207 RGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLS 259

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 83.8 bits (206), Expect = 4e-18
 Identities = 37/249 (14%), Positives = 69/249 (27%), Gaps = 28/249 (11%)

Query: 6   IEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSR-PDGNGYFAL 64
           + ++ +++ I    Q +N  A      A+  G    L +  E     +        Y A 
Sbjct: 109 LCLLLTSDEIVKVIQAENYQAF---RLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 165

Query: 65  QWAALNNFADIAQYIIDHGGDVN---ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA 121
           + AA N    +   + +             N       A  RG   V + L+     +  
Sbjct: 166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY 225

Query: 122 ADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF 181
           A++H         +YG        V  + A +     E       +   G  D +     
Sbjct: 226 AEIH-------EFEYG-----EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV----- 268

Query: 182 RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELT---AKDKAGLTPTQLAYDK 238
              S+  Q       L        ++    L+     + L              +LA   
Sbjct: 269 -TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 327

Query: 239 GHRQVALYL 247
           G++     L
Sbjct: 328 GNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 69.5 bits (169), Expect = 2e-13
 Identities = 26/224 (11%), Positives = 47/224 (20%), Gaps = 28/224 (12%)

Query: 64  LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD 123
           + W    N      +I  +   +          +     +    V  +L    A      
Sbjct: 19  IPWILWENL--FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNA 76

Query: 124 VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFAD---TIRLLL 180
              +   H                           +       AA  G +    T+ LLL
Sbjct: 77  KQLWSDAHKK-----------------------GIKSEVICFVAAITGCSSALDTLCLLL 113

Query: 181 FRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGH 240
             D        +       AA  G++     L      + +           +LA + GH
Sbjct: 114 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 173

Query: 241 RQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSIIILCI 284
             V   L                              ++I   +
Sbjct: 174 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 217

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.4 bits (215), Expect = 1e-19
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 22/280 (7%)

Query: 1   MASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNG 60
             SS ++++ +  + P  N N+ +  +        + + +++   +  D ++ +   G+ 
Sbjct: 14  FLSSPLKIMKALPS-PVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSS 72

Query: 61  YFALQWAALNNF-ADIAQYIIDHGGDVNA-TDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
               Q  + ++   ++     +   ++N   D +G T LHW     ++ +   LV++G+ 
Sbjct: 73  NQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN 132

Query: 119 VEAADVHGYRAVHVAAQYGQTSFLNHI---VAKYHADYDASDNEGRSPLHWAAYKG---- 171
               D  G   +  A +             +   +      D+  R+ LH          
Sbjct: 133 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG 192

Query: 172 ---------FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL-VHAGTKQEL 221
                          ++  ++        +  +  +             L +       L
Sbjct: 193 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 252

Query: 222 TAKDKAGLTPTQLAYDKGHRQVALYL--SNAQHMHRNHWG 259
            A+D  G T   +A   G+  +   L    A     N  G
Sbjct: 253 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 292

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.1 bits (209), Expect = 7e-19
 Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 20/188 (10%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFA----DIAQYIIDHGGDVNA 88
            ++  + E ++  V+  G++    D  G   L  A  +            +      +  
Sbjct: 114 LTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 172

Query: 89  TDNNGQTALHWAAVRGS-------------IAVADVLVQNGARVEAADVHGYRAVHVAAQ 135
            D+  +T LH   +                I +  ++ +    +++         +    
Sbjct: 173 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 232

Query: 136 YGQTSFLNHIVAKY--HADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDG 193
             + S L ++  K+      +A D+ G + L+ AA  G    +  LL   A     +K G
Sbjct: 233 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 292

Query: 194 CTPLHWAA 201
             P+ + A
Sbjct: 293 LRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.2 bits (165), Expect = 3e-13
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 25  AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH-- 82
           + +T   +A+ Y     +   V++    +                     I + +     
Sbjct: 188 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 247

Query: 83  -GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAA 134
               +NA D+NG T L+ AA  G+I++ D L+  GA    A+  G R V   A
Sbjct: 248 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 13/101 (12%), Positives = 33/101 (32%)

Query: 1   MASSEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNG 60
                +  +   +  P ++  + + +  +  +        +           ++  D NG
Sbjct: 200 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG 259

Query: 61  YFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA 101
              L  AA      I   ++D+G D    + +G   + + A
Sbjct: 260 DTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 83.6 bits (205), Expect = 2e-18
 Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 29/231 (12%)

Query: 31  FSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD 90
            +A + GD E++ + +E  GA ++  + +G  AL  A +++  D+ ++++++G ++N  D
Sbjct: 45  LAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103

Query: 91  NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH 150
           N G   LH AA  G + +A+ L+  GA V A +  G   + +A +      L + V +  
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163

Query: 151 ADY--------------------------DASDNEGRSPLHWAAYKGFADTIRLLLFRDA 184
            D                                 G + LH AA KG+ + ++LL+    
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223

Query: 185 SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLA 235
               +D DG TPLH AA  G  EAC +LV      ++ A +K G T   +A
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLC--DMEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.7 bits (161), Expect = 1e-12
 Identities = 29/117 (24%), Positives = 46/117 (39%)

Query: 19  NQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQY 78
             N     +               R+++     +  R   +G  AL  AA   + ++ + 
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217

Query: 79  IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQ 135
           +I    DVN  D +G T LH AA  G      +LV+N   +EA +  G  A  VA +
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.1 bits (157), Expect = 3e-12
 Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 7/158 (4%)

Query: 44  KFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR 103
           +++   GA V   +  G   L  A      ++ Q  ++  G         +  +     R
Sbjct: 123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR 182

Query: 104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSP 163
                   L             G  A+HVAA  G T  L  ++ +   D +  D +G +P
Sbjct: 183 ------QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKDYDGWTP 235

Query: 164 LHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAA 201
           LH AA+ G  +  R+L+         +K G T    A 
Sbjct: 236 LHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 22/107 (20%), Positives = 31/107 (28%)

Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
             +  +    A   G  + +  LL R A     + DG T LH A +  NV+    LV  G
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 217 TKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKIC 263
                   +         +         L    A     N  GD   
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 75.9 bits (185), Expect = 6e-16
 Identities = 47/274 (17%), Positives = 88/274 (32%), Gaps = 58/274 (21%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH--------GG 84
            +       + + +  +  ++  P  +    L W A N+ A+ ++ +I H        G 
Sbjct: 7   HTEAAGSYAITEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA 65

Query: 85  DVNATDNNGQTALHWAAVR---------------------------------GSIAVADV 111
           DVNA D +  T L  A +                                      +   
Sbjct: 66  DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVY 125

Query: 112 LVQNGARVEAADVHGYR---AVHVAAQYG----------QTSFLNHIVAKYHADYDASDN 158
           ++ +       +        A+ + A                    +     A  D+   
Sbjct: 126 MLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY 185

Query: 159 EGRSPLHWAAYKGFADTIRLL-LFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT 217
           +GR+ LH+AA       ++ L   + +++ +QD+DG TP+  AA  G +E    L+  G 
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 245

Query: 218 KQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
              + A D    T  QLA    H  +       +
Sbjct: 246 --SVEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 66.3 bits (160), Expect = 1e-12
 Identities = 19/99 (19%), Positives = 37/99 (37%)

Query: 16  PNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADI 75
                ++     T +  A+   +   ++  V E G++  + D +G   +  AA     ++
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 76  AQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQ 114
             Y+I  G  V A D    TA   A       + D+  +
Sbjct: 237 VMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 162 SPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQEL 221
           SP+        +  I   + R++      +   T LHW A   + E    L+    K+ +
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 222 TA------KDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNH 257
            A       D    TP  LA     R++  YL  A      +
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 103

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 10/115 (8%)

Query: 157 DNEGRSPLHWAAYKGFADTIRLLLFRD--------ASQGRQDKDGCTPLHWAALRGNVEA 208
               R+ LHW A    A+    L+  +        A     D D  TPL  A L      
Sbjct: 30  PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 89

Query: 209 CTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKIC 263
              L+ AG    +  K +                + +Y+ N+  +  +       
Sbjct: 90  VAYLMKAGADPTIYNKSERSALHQA--AANRDFGMMVYMLNSTKLKGDIEELDRN 142

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 74.4 bits (181), Expect = 7e-16
 Identities = 50/209 (23%), Positives = 76/209 (36%), Gaps = 36/209 (17%)

Query: 73  ADIAQYIIDHGGDVNAT-DNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVH 131
           A +   ++  G ++NAT D  G+T+LH AA       A  L+  GA   + D  G   +H
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 61

Query: 132 VAAQYGQTSFLN---------------------------------HIVAKYHADYDASDN 158
            A                                             +    AD +A+DN
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADN 121

Query: 159 EGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK 218
            G++ LHWAA     + + +LL   A++  QD    TPL  AA  G+ EA   L+     
Sbjct: 122 SGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA- 180

Query: 219 QELTAKDKAGLTPTQLAYDKGHRQVALYL 247
                 D     P  +A ++ H  +   L
Sbjct: 181 -NREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 26/101 (25%), Positives = 43/101 (42%)

Query: 39  FEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALH 98
            E + + +    A ++  D +G  AL WAA  N  +    ++ H  + +A D+  +T L 
Sbjct: 102 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 161

Query: 99  WAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT 139
            AA  GS   +  L+ N A  E  D        VA++    
Sbjct: 162 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHH 202

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 1/92 (1%)

Query: 173 ADTIRLLLFRDAS-QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTP 231
           A  I  LL + A      DK G T LH AA     +A   L+ AG               
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 61

Query: 232 TQLAYDKGHRQVALYLSNAQHMHRNHWGDKIC 263
             +A D       L  + A +++         
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTP 93

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 3e-14
 Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 12/202 (5%)

Query: 59  NGYFALQWAALNNFADIAQYII----DHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQ 114
           +G   L  A ++    +   +I         +N  +N  QT LH A +     +A+ L+ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 115 NGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA-----SDNEGRSPLHWAAY 169
            G   E  D  G   +H+A + G  + +  +       +       ++  G + LH A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 170 KGFADTIRLLLFRDAS-QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAG 228
            G+   + LL+   A    ++  +G T LH A    N +  ++L+  G           G
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV--NRVTYQG 178

Query: 229 LTPTQLAYDKGHRQVALYLSNA 250
            +P QL + +   ++   L   
Sbjct: 179 YSPYQLTWGRPSTRIQQQLGQL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 2/74 (2%)

Query: 192 DGCTPLHWAALRGNVEACTVLVHAGTKQ--ELTAKDKAGLTPTQLAYDKGHRQVALYLSN 249
           DG + LH A +         ++         L  ++    TP  LA      ++A  L  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 250 AQHMHRNHWGDKIC 263
           A             
Sbjct: 61  AGCDPELRDFRGNT 74

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.3 bits (168), Expect = 8e-14
 Identities = 41/241 (17%), Positives = 74/241 (30%), Gaps = 52/241 (21%)

Query: 57  DGNGYFALQWAALNNFADIAQYIIDHGGD---VNATDNNGQTALHWAAVRGSIAVADVLV 113
             +G  AL  A ++       +++        ++  ++ GQTALH AA+ G  +  + L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 114 QNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK-------------YHADYDASDNEG 160
             GA V  A+  G+ A+H+A +    +    ++                 +     D   
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 161 RSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGC-------------------------- 194
                 +      +              ++ DG                           
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 195 --------TPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALY 246
                   TPLH A          +L+ AG   + TA+   G TP   A  + +  +A  
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGA--DPTARMYGGRTPLGSALLRPNPILARL 243

Query: 247 L 247
           L
Sbjct: 244 L 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.8 bits (164), Expect = 3e-13
 Identities = 30/169 (17%), Positives = 48/169 (28%), Gaps = 14/169 (8%)

Query: 65  QWAALNNFADIAQYIIDHGGDVNATDNNG--------------QTALHWAAVRGSIAVAD 110
             A        A  ++          ++                 A   +          
Sbjct: 83  HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142

Query: 111 VLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYK 170
                  ++EA +  G+  +HVA  +     +  +              GR+PLH A   
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 171 GFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQ 219
             A  + LLL   A    +   G TPL  A LR N     +L   G  +
Sbjct: 203 QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (154), Expect = 5e-12
 Identities = 32/181 (17%), Positives = 55/181 (30%), Gaps = 5/181 (2%)

Query: 87  NATDNNGQTALHWAAVRGSIAVADVLVQNGA---RVEAADVHGYRAVHVAAQYGQTSFLN 143
                +G TALH A +       D L+   A    ++  +  G  A+H+AA  G+ S   
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST-V 61

Query: 144 HIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALR 203
             +    A    ++  G + LH A          +LL    S  R   D           
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 204 GNVEACTVL-VHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKI 262
               A   +      + E   +D+      +     GH  + + + +          D  
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 263 C 263
            
Sbjct: 182 A 182

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 48  EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHG 83
           + GA  +     G   L  A L     +A+ +  HG
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 2e-13
 Identities = 47/226 (20%), Positives = 79/226 (34%), Gaps = 43/226 (19%)

Query: 59  NGYFALQWAALNNFADIAQYIID----HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQ 114
           +G   L  A +         +++     G +++  +N  QT LH A +    +V  +LV 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 115 NGARVEAADVHGYRAVHVAAQYGQTSFL-------------------------------- 142
            GA   A D HG  A H+A ++   + L                                
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 143 -----NHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPL 197
                  ++ +           GRSPL  A        ++LLL   A+   Q   G + L
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 198 HWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQV 243
           H A+ RG +     LV +G   + + K+    TP  +A  +    +
Sbjct: 182 HSASGRGLLPLVRTLVRSGA--DSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 4e-10
 Identities = 36/202 (17%), Positives = 72/202 (35%)

Query: 6   IEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQ 65
           + +        +   N  Q  +      +       L        A         + A +
Sbjct: 23  VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 82

Query: 66  WAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
             +      +         D+ A + +G TALH A          +L++ GA ++A D+ 
Sbjct: 83  HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK 142

Query: 126 GYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS 185
             R+  + A    +  +  ++ ++ A+ +A    G S LH A+ +G    +R L+   A 
Sbjct: 143 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 202

Query: 186 QGRQDKDGCTPLHWAALRGNVE 207
              ++    TPL  A  R  ++
Sbjct: 203 SSLKNCHNDTPLMVARSRRVID 224

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 6e-10
 Identities = 14/74 (18%), Positives = 31/74 (41%)

Query: 35  AYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQ 94
              +   + + + + GA+V+    +G  AL  A+      + + ++  G D +  + +  
Sbjct: 152 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 211

Query: 95  TALHWAAVRGSIAV 108
           T L  A  R  I +
Sbjct: 212 TPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 26/84 (30%), Positives = 40/84 (47%)

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGAR 118
           +G   L  A  NN   + Q ++ HG +VNA   +G +ALH A+ RG + +   LV++GA 
Sbjct: 143 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 202

Query: 119 VEAADVHGYRAVHVAAQYGQTSFL 142
               + H    + VA        L
Sbjct: 203 SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 192 DGCTPLHWAALRGNVEACTVLVHAGTKQ--ELTAKDKAGLTPTQLAYDKGHRQVALYLSN 249
           DG TPLH A ++GN+ A   LV+   +   EL   +    TP  LA       V   L  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 250 AQHMHRNHWGDKIC 263
           A             
Sbjct: 62  AGASPMALDRHGQT 75

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (162), Expect = 3e-13
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 6/191 (3%)

Query: 62  FALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVE 120
           + L  A + N     Q ++      +   D +G+  LHW+    +  +   L+     V 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 121 AADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEG----RSPLHWAAYKGFADTI 176
             D                  L  + + Y        N+      + LH A  K + +  
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY 236
           + L+   AS   +DK    PLH AA  G+++   +L   G    +  +DK G TP   A 
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHAL 180

Query: 237 DKGHRQVALYL 247
            +GH   A+ L
Sbjct: 181 AEGHGDAAVLL 191

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 6/215 (2%)

Query: 33  ASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNN 92
           A    +F K+++ +    + + + D +G   L W+      +I  +++    +VN  D  
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 66

Query: 93  GQTALHWAAVRGSIAVADVL----VQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAK 148
             +      +  S+   +V+     +          +        A   +   ++  + +
Sbjct: 67  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 126

Query: 149 YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQ-GRQDKDGCTPLHWAALRGNVE 207
             A     D   + PLH AA  G    I LL     S    QDK G TPL  A   G+ +
Sbjct: 127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 186

Query: 208 ACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQ 242
           A  +LV      E    D  G     +A ++  ++
Sbjct: 187 AAVLLVEKY-GAEYDLVDNKGAKAEDVALNEQVKK 220

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 1/104 (0%)

Query: 163 PLHWAAYKGFADTIRLLLFRDASQ-GRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQEL 221
           PLH A  +     ++ LL    S   ++D+DG  PLHW+      E  + L+       L
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 222 TAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGR 265
                                  +     + +  +       G 
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 106

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGD-VNATDNNGQTALHWAAVRGSIAV 108
           GASV   D      L  AA      + + +   G   VN  D  G T L  A   G    
Sbjct: 128 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 187

Query: 109 ADVLVQN-GARVEAADVHGYRAVHVAAQYGQTSFL 142
           A +LV+  GA  +  D  G +A  VA       F 
Sbjct: 188 AVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 222

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.1 bits (147), Expect = 9e-12
 Identities = 28/149 (18%), Positives = 44/149 (29%), Gaps = 12/149 (8%)

Query: 63  ALQWAALNNFADIAQYIIDHGGDVNAT------DNNGQTALHWAAV---RGSIAVADVLV 113
           +L  A               G D+             +TALH A     R S+ + D LV
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 114 QNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFA 173
           QN   ++                   +    ++ +  A  + ++  G +PL  A      
Sbjct: 69  QNSGNLDKQTGK-GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 174 DTIRLLLFRDASQGRQDKDGCTPLHWAAL 202
               LL    A  GR +        W  L
Sbjct: 128 HCEELLT--QALSGRFNSHVHVEYEWRLL 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 5e-08
 Identities = 21/114 (18%), Positives = 45/114 (39%)

Query: 12  TEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNN 71
           TE IP  N ++       +   S       +  F+ ++  ++ +  G G  AL +  L +
Sbjct: 33  TEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD 92

Query: 72  FADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVH 125
            A+  + ++     +   + +G+T L  A         ++L Q  +    + VH
Sbjct: 93  NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 5e-08
 Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 8/140 (5%)

Query: 88  ATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA------ADVHGYRAVHVAAQYGQTSF 141
           A       +L  A     I        +G  +               A+H+A +    + 
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 142 LNHI--VAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHW 199
           L+ +  + +   + D    +G + LH+      A+ ++LLL   AS    ++ G TPL  
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 200 AALRGNVEACTVLVHAGTKQ 219
           A    +     +L  A + +
Sbjct: 121 AKRLKHEHCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 154 DASDNEGRSPLHWAAY---KGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACT 210
                   + LH A     +     +  L+    +  +Q   G T LH+  L  N E   
Sbjct: 39  ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 98

Query: 211 VLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ 251
           +L+      E    +++G TP  +A    H      L+ A 
Sbjct: 99  LLLRGKASIE--IANESGETPLDIAKRLKHEHCEELLTQAL 137

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-10
 Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 1/154 (0%)

Query: 63  ALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAA 122
            L  AA     +    ++ +  +VNA +  G+TA       G+  +A  L+  GA  +  
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA-LQVMKLGNPEIARRLLLRGANPDLK 62

Query: 123 DVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR 182
           D  G+  +H AA+ G    L  ++          +         A          L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 183 DASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG 216
            ++ G ++  G T    A L G  E  +++   G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 7e-08
 Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 3/153 (1%)

Query: 95  TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYD 154
             L  AA RG +     L+QN   V A +  G  A+ V         +   +    A+ D
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV--MKLGNPEIARRLLLRGANPD 60

Query: 155 ASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVH 214
             D  G + +H AA  GF DT++ LL   A    +D +G  PLH AA  G++      + 
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF-LV 119

Query: 215 AGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
             T   +  ++  G T   LA   G  +V   +
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-10
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 31  FSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD 90
             A+A GD +++R+ +  +       +  G  ALQ         IA  ++  G   N  D
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQD 65

Query: 91  NNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH 150
            +G + +H AA  G +    VLV++GA V   D  G   +H+A Q G T+ ++ + A   
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--E 123

Query: 151 ADYDASDNEGRSPLHWAAYKGFADTIRLLL 180
           +D    D  G +PL  A  +G  D + +L 
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 4e-09
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 4/152 (2%)

Query: 63  ALQWAALNNFADIAQYIIDHGG-DVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEA 121
            L  AA        + ++       +A +  G+TAL       +    ++L Q  +    
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 122 ADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF 181
                      A      +    +      +    D  G  P+H A  +G    +  L  
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV--PDGTGALPIHLAVQEGHTAVVSFLA- 121

Query: 182 RDASQGRQDKDGCTPLHWAALRGNVEACTVLV 213
            ++   R+D  G TPL  A  RG  +   +L 
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 6e-06
 Identities = 32/162 (19%), Positives = 52/162 (32%), Gaps = 8/162 (4%)

Query: 93  GQTALHWAAVRGSI-AVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHA 151
               L  AA RG +  V  +L +     +A +  G  A+ V         L  +      
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 152 DYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTV 211
           +   +                   + +     A     D  G  P+H A   G+    + 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLV--EHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 212 LVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHM 253
           L       +L  +D  GLTP +LA  +G + +   L    HM
Sbjct: 120 LAAES---DLHRRDARGLTPLELALQRGAQDLVDIL--QGHM 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA V+ PDG G   +  A       +  ++     D++  D  G T L  A  RG+  + 
Sbjct: 91  GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDARGLTPLELALQRGAQDLV 149

Query: 110 DVLVQ 114
           D+L  
Sbjct: 150 DILQG 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (131), Expect = 9e-10
 Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 2/150 (1%)

Query: 63  ALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAA 122
            L  AA     D  + ++ +G      D  G + LH AA  G  +  +V +        A
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEV-LLRAGVSRDA 62

Query: 123 DVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR 182
                R     A     + +  ++ K+ AD +A D    + LHWA      + + LL+  
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122

Query: 183 DASQGRQDKDGCTPLHWAALRGNVEACTVL 212
            A    Q K   T    +   GN +   +L
Sbjct: 123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (110), Expect = 7e-07
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 50  GASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVA 109
           GA V+  D     AL WA  +N  ++ + +I +G DV+      +TA   +   G+  +A
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

Query: 110 DVL 112
           ++L
Sbjct: 150 EIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 4/153 (2%)

Query: 95  TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYD 154
             L  AA  G      +L+ NGA           +    A          ++ +     D
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 155 ASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVH 214
           A     R+PLH AA +G A+ + +LL   A    +D    T LHWA    +     V + 
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWA--TEHNHQEVVELL 119

Query: 215 AGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL 247
                ++  + K   T   ++ D G+  +A  L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 6e-06
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 4/127 (3%)

Query: 95  TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYD 154
             L  +++ G   +   ++         +  G  A+H A   G T      + ++  + +
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI-VKFLVQFGVNVN 61

Query: 155 ASDNEGRSPLHWAAYKGFADTIRLLLFRDA---SQGRQDKDGCTPLHWAALRGNVEACTV 211
           A+D++G +PLH AA        + L+   A   +    D             G  +    
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 212 LVHAGTK 218
           L     K
Sbjct: 122 LYGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 8e-06
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 10/133 (7%)

Query: 64  LQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD 123
           L  ++L    D+ Q II    D +  ++ G TALH A   G   +   LVQ G  V AAD
Sbjct: 5   LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 64

Query: 124 VHGYRAVHVAAQYGQTSFLNHIVAKYHADYDA---SDNEGRSPLHWAAYKGFADTIRLLL 180
             G+  +H AA          +V +  A   A   SD +  +       +G+    + L 
Sbjct: 65  SDGWTPLHCAASCNNVQVCKFLV-ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 181 FRDASQGRQDKDG 193
                 G Q+K G
Sbjct: 124 ------GVQEKMG 130

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 59  NGYFALQWAALNNFADIAQYIIDHGGDVNATDNN-GQTA--LHWAAVRGSIAVADVLVQN 115
           +G+  L  AA  N   + +++++ G  V A   +  QTA         G    +  L   
Sbjct: 66  DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 125

Query: 116 GARV 119
             ++
Sbjct: 126 QEKM 129

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 7e-06
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 93  GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHAD 152
               L  AA RG +     L++ GA   A + +G R + V            ++     +
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 153 YDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL 212
                   R   H AA +GF DT+ +L    A    +D  G  P+  A   G+ +    L
Sbjct: 63  CADPATLTRPV-HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 213 VHA 215
             A
Sbjct: 122 RAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-05
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 63  ALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAA 122
            L  AA     +  + +++ G + NA ++ G+  +    +  +     + + +GA    A
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELL-LLHGAEPNCA 64

Query: 123 DVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL 180
           D          A          ++ +  A  D  D  GR P+  A   G  D  R L 
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (84), Expect = 8e-04
 Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 95  TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYD 154
               WA   G +      V  G  V      G + +H AA  GQ       +    AD +
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI-LEFLLLKGADIN 62

Query: 155 ASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAA 201
           A D    +PL  A Y+G    ++LLL + A +  +  DG T L    
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	541
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83
d2ayja1	56	Ribosomal protein L40e {Sulfolobus solfataricus [T	82.98

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-38  Score=293.67  Aligned_cols=220  Identities=29%  Similarity=0.417  Sum_probs=211.2

Q ss_pred             chhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCC
Q 009183           26 AVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGS  105 (541)
Q Consensus        26 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~  105 (541)
                      +.+.++.+|+.|+++.+++++++.+.+++.+|.+|+||||+||..|+.+++++|++.+.+....+..+.++++.|+..|+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            35789999999999999999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             HHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCC
Q 009183          106 IAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDAS  185 (541)
Q Consensus       106 ~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  185 (541)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. |.+++.+|..|.||||+|+..++.+++++|.+.+.+
T Consensus        83 ~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~  161 (223)
T d1uoha_          83 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS  161 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCccchhhhhcCCcchhhhhccccce
Confidence            9999999999999999999999999999999999999999976 999999999999999999999999999999999999


Q ss_pred             CCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHH
Q 009183          186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSN  249 (541)
Q Consensus       186 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~  249 (541)
                      ++.+|.+|.||||.|+..|+.+++++|+++|+  +++.+|.+|+|||++| +.|+.+++++|++
T Consensus       162 i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Ga--d~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         162 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGA--SIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC--CSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eeeccCCCCceeccccccCcHHHHHHHHHCCC--CCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999999999999999999999998  7888999999999998 5799999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-35  Score=277.18  Aligned_cols=228  Identities=23%  Similarity=0.190  Sum_probs=185.3

Q ss_pred             CCcchhhHHHHHHcCCHHHHHHHHHhcCCC---CccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 009183           23 NQAAVTDVFSASAYGDFEKLRKFVEEDGAS---VSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHW   99 (541)
Q Consensus        23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~---~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~   99 (541)
                      +++|.||||.||++|+.+.++.|++. +++   ++.+|.+|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~   84 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL   84 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhh
Confidence            57889999999999999999999875 444   77889999999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHhCCCCCCcccc----------CCChH---HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHH
Q 009183          100 AAVRGSIAVADVLVQNGARVEAADV----------HGYRA---VHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHW  166 (541)
Q Consensus       100 A~~~g~~~~v~~Ll~~g~~~~~~d~----------~g~t~---l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~  166 (541)
                      |+..|+.++++.|++.+........          .+.+.   +..............+....+.+++.+|..|.||||+
T Consensus        85 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~  164 (255)
T d1oy3d_          85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHV  164 (255)
T ss_dssp             HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHH
T ss_pred             hhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccc
Confidence            9999999999999987654322111          11111   1111111111122222223456778899999999999


Q ss_pred             HHHhCcHHHHHHHHhcCCCCCcc-cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHH
Q 009183          167 AAYKGFADTIRLLLFRDASQGRQ-DKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL  245 (541)
Q Consensus       167 A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~  245 (541)
                      |+..++.+++++|++.+++.+.. +..|.||||+|+..|+.+++++|+++|+  +++.+|..|+|||++|+.+++.++++
T Consensus       165 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~ga--din~~d~~g~t~L~~A~~~~~~~i~~  242 (255)
T d1oy3d_         165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA--DPTARMYGGRTPLGSALLRPNPILAR  242 (255)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             cccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            99999999999999999998865 5679999999999999999999999998  78889999999999999999999999


Q ss_pred             HHHHhhhh
Q 009183          246 YLSNAQHM  253 (541)
Q Consensus       246 ~L~~~~~~  253 (541)
                      +|+++++.
T Consensus       243 ~Ll~~Ga~  250 (255)
T d1oy3d_         243 LLRAHGAP  250 (255)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHcCCC
Confidence            99998874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-34  Score=267.38  Aligned_cols=220  Identities=24%  Similarity=0.330  Sum_probs=202.7

Q ss_pred             hhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCC---CCCCCchHHHHHHHh
Q 009183           27 VTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNA---TDNNGQTALHWAAVR  103 (541)
Q Consensus        27 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~---~~~~g~tpL~~A~~~  103 (541)
                      .+|||.||++|+.+.++.|++..+.+++.+|.+|.||||+|+..|+.+++++|+++|++++.   .+..|.+|+|+|+..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            37999999999999999999998999999999999999999999999999999999999864   566799999999999


Q ss_pred             CCHHHHHHHHhCCCCC--CccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh
Q 009183          104 GSIAVADVLVQNGARV--EAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF  181 (541)
Q Consensus       104 g~~~~v~~Ll~~g~~~--~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  181 (541)
                      +..++++.++..+.+.  ...+..+.++++.++..++.+++++|+.. +...+.+|..|.||||+|+..|+.+++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhh-cccccccCCCCCCccchhhhcccccccccccc
Confidence            9999999999988754  44677899999999999999999999976 88889999999999999999999999999999


Q ss_pred             cC-CCCCcccCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhh
Q 009183          182 RD-ASQGRQDKDGCTPLHWAALRGNVEACTVLVH-AGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQH  252 (541)
Q Consensus       182 ~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~  252 (541)
                      .+ .+++.+|.+|.||||+|+.+|+.+++++|++ .|+  +++.+|.+|+|||++|++   .+++++|++++.
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~ga--d~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~  227 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA--EYDLVDNKGAKAEDVALN---EQVKKFFLNNVV  227 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC--CSCCCCTTSCCTGGGCSC---HHHHHHHHHHCC
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCC--CCCCcCCCCCCHHHHHhh---HHHHHHHHHcCC
Confidence            87 6889999999999999999999999999996 588  788899999999999984   479999998775

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=5.5e-34  Score=275.29  Aligned_cols=221  Identities=29%  Similarity=0.456  Sum_probs=201.9

Q ss_pred             CcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHh
Q 009183           24 QAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVR  103 (541)
Q Consensus        24 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~  103 (541)
                      ..+.++|+.||+.|+.+.|+.||+. |+++|.+|.+|.||||+|+.+|+.++|++|+++|++.+..+..+.+||+.|+..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            3467999999999999999999976 899999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcC--------------------------CCcccCC
Q 009183          104 GSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH--------------------------ADYDASD  157 (541)
Q Consensus       104 g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~--------------------------~~~~~~d  157 (541)
                      ++.++++.|+++|+..+..|..+.+++++|+..+..+.+..++...+                          ......+
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence            99999999999999999999999999999999888888888776432                          2344567


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHh
Q 009183          158 NEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYD  237 (541)
Q Consensus       158 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~  237 (541)
                      ..|.||||.|+..|+.++++.|++.|++++.+|.+|.||||+|+..|+.++|++|+++|+  +++.+|..|+|||++|++
T Consensus       197 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Ga--dv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC--DMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCTTTSCCS
T ss_pred             CCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999998  778899999999999976


Q ss_pred             cCchHHHHHHHHhh
Q 009183          238 KGHRQVALYLSNAQ  251 (541)
Q Consensus       238 ~~~~~i~~~L~~~~  251 (541)
                          +++++|.+..
T Consensus       275 ----~~~~~L~~~~  284 (291)
T d1s70b_         275 ----DILGYLEELQ  284 (291)
T ss_dssp             ----GGGHHHHHHH
T ss_pred             ----HHHHHHHHHh
Confidence                5666665543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-33  Score=281.63  Aligned_cols=264  Identities=22%  Similarity=0.322  Sum_probs=160.7

Q ss_pred             CceEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCC
Q 009183            4 SEIEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHG   83 (541)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g   83 (541)
                      +++++++.+.+.+.+.+..+..|.||||.|+..|+.++++.|++. |++++.+|.+|.||||+|+..|+.+++++|+..+
T Consensus        11 g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~   89 (408)
T d1n11a_          11 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN   89 (408)
T ss_dssp             TCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhh
Confidence            344555555555555555555666666666666666666666654 5666666666666666666655555444433221


Q ss_pred             CC---------------------------------CCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHH
Q 009183           84 GD---------------------------------VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAV  130 (541)
Q Consensus        84 ~~---------------------------------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l  130 (541)
                      .+                                 .+..+..+.++++.|+..++.++++.|+++|++++..+..|.+||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L  169 (408)
T d1n11a_          90 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPL  169 (408)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHH
T ss_pred             hccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHH
Confidence            11                                 011111222222222222233334444444555555555555555


Q ss_pred             HHHHHcCCHHHHHHHHHh--------------------------------------------------------------
Q 009183          131 HVAAQYGQTSFLNHIVAK--------------------------------------------------------------  148 (541)
Q Consensus       131 ~~A~~~g~~~~v~~Ll~~--------------------------------------------------------------  148 (541)
                      |+|+..|+.+++++|+.+                                                              
T Consensus       170 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  249 (408)
T d1n11a_         170 HVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL  249 (408)
T ss_dssp             HHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhh
Confidence            555555555555555433                                                              


Q ss_pred             ---cCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccC
Q 009183          149 ---YHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKD  225 (541)
Q Consensus       149 ---~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d  225 (541)
                         .+...+..|..|.||++.|+..++.+++++|+++|++++..+..+.||||.|+..++.++++.+++.|+  +++.+|
T Consensus       250 ~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~--~in~~d  327 (408)
T d1n11a_         250 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA--DVNAKT  327 (408)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC--CTTCCC
T ss_pred             hhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccc--cccccC
Confidence               122333345566677777777777788888888888877777777788888888888888888888776  677888


Q ss_pred             CCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHHH
Q 009183          226 KAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSII  280 (541)
Q Consensus       226 ~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i  280 (541)
                      .+|+||||+|++.|+.+++++|+++++...          .....|.+|+.++..
T Consensus       328 ~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n----------~~d~~G~t~L~~A~~  372 (408)
T d1n11a_         328 KLGYSPLHQAAQQGHTDIVTLLLKNGASPN----------EVSSDGTTPLAIAKR  372 (408)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSC----------CCCSSSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----------CCCCCCCCHHHHHHH
Confidence            889999999999999999999988876543          124457788777654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-33  Score=260.26  Aligned_cols=208  Identities=27%  Similarity=0.336  Sum_probs=191.4

Q ss_pred             CceEEeecc-ccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhC
Q 009183            4 SEIEVVSST-EAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDH   82 (541)
Q Consensus         4 ~~~~~~~~l-~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~   82 (541)
                      ++++.++.+ .+.+......|..|.||||.||..|+.++++.++.. +......+..+.++++.|+..++.+++++|+++
T Consensus        14 G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~   92 (223)
T d1uoha_          14 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK   92 (223)
T ss_dssp             TCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccc-ccccccccccccccccccccccccchhHHHhcc
Confidence            454555443 455667777899999999999999999999988876 777777788899999999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCc
Q 009183           83 GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRS  162 (541)
Q Consensus        83 g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  162 (541)
                      |++++.++.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..++.+++++|.+. +.+++.+|..|.|
T Consensus        93 ~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~-~~~i~~~d~~g~T  171 (223)
T d1uoha_          93 GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY-KASTNIQDTEGNT  171 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTCCC
T ss_pred             CceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc-cceeeeccCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999988865 9999999999999


Q ss_pred             HHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHH
Q 009183          163 PLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVH  214 (541)
Q Consensus       163 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  214 (541)
                      |||.|+..|+.+++++|+++|++++.+|.+|+||||+| ..|+.++++.|++
T Consensus       172 pL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         172 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             eeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999999999999999999999999999998 5799999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.3e-32  Score=263.42  Aligned_cols=241  Identities=22%  Similarity=0.302  Sum_probs=202.4

Q ss_pred             eEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHH-------hcCCCCccCCCCCchHHHHHHHcCcHHHHHH
Q 009183            6 IEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVE-------EDGASVSRPDGNGYFALQWAALNNFADIAQY   78 (541)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~-------~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~   78 (541)
                      ..+.+.+.+...+ ..+...|.||||.||..|+.++++.|+.       +.|+++|.+|.+|.||||+|+..|+.+++++
T Consensus        14 ~~~~~~l~~~~~n-~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~   92 (277)
T d2fo1e1          14 YAITEPITRESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY   92 (277)
T ss_dssp             SCCCSCCSTTTTT-TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHhcCCC-cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccc
Confidence            3344444444333 3444568999999999999999987753       3589999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCC---CCCCccccCCChHHHHHHHcCCHH---HHHHHHHhc---
Q 009183           79 IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNG---ARVEAADVHGYRAVHVAAQYGQTS---FLNHIVAKY---  149 (541)
Q Consensus        79 Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g---~~~~~~d~~g~t~l~~A~~~g~~~---~v~~Ll~~~---  149 (541)
                      |+++|++++.++.+|.|||++|+..++.++++.+...+   ..++..+..+.++.+.+...+..+   .+..+.+..   
T Consensus        93 Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (277)
T d2fo1e1          93 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV  172 (277)
T ss_dssp             HHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCS
T ss_pred             ccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccc
Confidence            99999999999999999999999999999999998764   456677888999999998877654   333333331   


Q ss_pred             ----CCCcccCCCCCCcHHHHHHHhCcHHHHHHHH-hcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Q 009183          150 ----HADYDASDNEGRSPLHWAAYKGFADTIRLLL-FRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAK  224 (541)
Q Consensus       150 ----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~  224 (541)
                          ....+..+..|.||||+++..++.+++++++ ..+.+.+.+|..|.||||+|+..|+.+++++|+++|+  +++.+
T Consensus       173 ~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~ga--din~~  250 (277)
T d2fo1e1         173 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA--SVEAV  250 (277)
T ss_dssp             SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--CSSCC
T ss_pred             cccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcC--CCCCc
Confidence                1223456778999999999999999988755 6788999999999999999999999999999999998  78889


Q ss_pred             CCCCCCHHHHHHhcCchHHHHHHHH
Q 009183          225 DKAGLTPTQLAYDKGHRQVALYLSN  249 (541)
Q Consensus       225 d~~g~t~l~~A~~~~~~~i~~~L~~  249 (541)
                      |..|+|||++|+++|+.+++++|.+
T Consensus       251 d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         251 DATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999975

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-31  Score=270.38  Aligned_cols=241  Identities=25%  Similarity=0.356  Sum_probs=205.6

Q ss_pred             eEEeeccccCCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCC
Q 009183            6 IEVVSSTEAIPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGD   85 (541)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~   85 (541)
                      .++++.+.+...+....+..+.++|+.|+..|+.+.++.|+.. +.+++..+..|.||+|.++...+.++.+.++..+..
T Consensus       145 ~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~  223 (408)
T d1n11a_         145 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS  223 (408)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcchhhhccchhhhhhhhhhcccc
Confidence            3444455555555555566666777777777777777666654 666777777777777777777777777777776666


Q ss_pred             CCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHH
Q 009183           86 VNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLH  165 (541)
Q Consensus        86 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~  165 (541)
                      ....+..+.||||.|+..++.++++.+.+.+.+.+..+..|.||++.|+..++.+++++|+++ |++++..+..+.||||
T Consensus       224 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~-g~~~~~~~~~~~t~L~  302 (408)
T d1n11a_         224 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLH  302 (408)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHH
T ss_pred             ccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHC-CCccccccccccccch
Confidence            666777788999999999999999999999999999999999999999999999999999986 9999999999999999


Q ss_pred             HHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHH
Q 009183          166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL  245 (541)
Q Consensus       166 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~  245 (541)
                      .|+..++.++++++++.|++++.+|.+|+||||.|++.|+.++|++|+++|+  +++.+|.+|+|||++|+++|+.++++
T Consensus       303 ~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GA--d~n~~d~~G~t~L~~A~~~~~~~iv~  380 (408)
T d1n11a_         303 VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA--SPNEVSSDGTTPLAIAKRLGYISVTD  380 (408)
T ss_dssp             HHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CSCCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             hhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999998  77889999999999999999999999


Q ss_pred             HHHHh
Q 009183          246 YLSNA  250 (541)
Q Consensus       246 ~L~~~  250 (541)
                      +|..-
T Consensus       381 ~L~~~  385 (408)
T d1n11a_         381 VLKVV  385 (408)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88553

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=249.64  Aligned_cols=228  Identities=26%  Similarity=0.300  Sum_probs=195.6

Q ss_pred             cchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCC-CCchHHHHHHHcCcHHHHHHHHhCCCCCCC---------------
Q 009183           25 AAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDG-NGYFALQWAALNNFADIAQYIIDHGGDVNA---------------   88 (541)
Q Consensus        25 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~---------------   88 (541)
                      ++.++|+.|++.|+.++|+.|++. |+++|.++. .|.||||+|+..|+.+++++|++.+.+.+.               
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~-G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            467899999999999999999876 899987764 699999999999999999999998775433               


Q ss_pred             ------------------CCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCcc----------ccCCChHHHHHHHcCCHH
Q 009183           89 ------------------TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAA----------DVHGYRAVHVAAQYGQTS  140 (541)
Q Consensus        89 ------------------~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~----------d~~g~t~l~~A~~~g~~~  140 (541)
                                        .+..+.|+++.|+..|+...++.+++...+++.+          +..|.||||+|+..|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                              2345667777777777777777777766655433          346899999999999999


Q ss_pred             HHHHHHHhcCCCcccCCCCCCcHHHHHHHhC----cHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHc-
Q 009183          141 FLNHIVAKYHADYDASDNEGRSPLHWAAYKG----FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA-  215 (541)
Q Consensus       141 ~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~----~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-  215 (541)
                      ++++|+++.+++++..+..|.++.+.+...+    ..+++++|+++|++++.+|..|.||||.|+..|+.+++++|++. 
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            9999999889999999999998887765433    45799999999999999999999999999999999999999985 


Q ss_pred             CCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcc
Q 009183          216 GTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHR  255 (541)
Q Consensus       216 g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~  255 (541)
                      |+  +++.+|.+|.|||++|+++|+.+++++|+++|+..+
T Consensus       243 g~--din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         243 HI--EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             SC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             CC--CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            65  788999999999999999999999999999988653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.1e-31  Score=241.92  Aligned_cols=220  Identities=23%  Similarity=0.277  Sum_probs=199.8

Q ss_pred             CcchhhHHHHHHcCCHHHHHHHHH---hcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 009183           24 QAAVTDVFSASAYGDFEKLRKFVE---EDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWA  100 (541)
Q Consensus        24 ~~~~~~L~~A~~~g~~~~v~~ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A  100 (541)
                      ++|.||||.||+.|+.+.++.|++   +.|+++|.+|.+|.||||+|+..|+.+++++|+++|++++..+..+.++++.|
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            368999999999999999998875   57899999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhCCCC----CCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHH
Q 009183          101 AVRGSIAVADVLVQNGAR----VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTI  176 (541)
Q Consensus       101 ~~~g~~~~v~~Ll~~g~~----~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v  176 (541)
                      ...++.++++.+......    .+.......++++.+...........|...........+..+.++|+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            999999999988775432    3445667789999999999999988888765555566778899999999999999999


Q ss_pred             HHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHH
Q 009183          177 RLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL  245 (541)
Q Consensus       177 ~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~  245 (541)
                      +.++++|.+.+.+|..|.||||+|+..|+.+++++|+++|+  +++.+|.+|.|||++|+++|+.|+++
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga--d~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA--DSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC--CTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999999999999999999999999999998  67889999999999999999988874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-31  Score=244.93  Aligned_cols=190  Identities=22%  Similarity=0.323  Sum_probs=100.7

Q ss_pred             CchHHHHHHHcCcH----HHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHH
Q 009183           60 GYFALQWAALNNFA----DIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQ  135 (541)
Q Consensus        60 g~t~Lh~A~~~~~~----~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~  135 (541)
                      |.||||+|+..|+.    ++++.+.+.|+++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||++.|+.
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~   81 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE   81 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            45555555555543    23333344455555555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHhcC-----CCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCccc-CCCCcHHHHHHHcCCHHHH
Q 009183          136 YGQTSFLNHIVAKYH-----ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQD-KDGCTPLHWAALRGNVEAC  209 (541)
Q Consensus       136 ~g~~~~v~~Ll~~~~-----~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~tpLh~A~~~g~~~~v  209 (541)
                      .++.++++.|++...     .........|.||||.|+..++.+++++|+..|+.++.++ .+|.||||+|+..|+.+++
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v  161 (221)
T d1iknd_          82 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV  161 (221)
T ss_dssp             HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHH
Confidence            555555555544311     1112223445566666666666666666666666555543 3466666666666666666


Q ss_pred             HHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhh
Q 009183          210 TVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQ  251 (541)
Q Consensus       210 ~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~  251 (541)
                      ++|+++|+  +++.+|.+|+||+++|++.++.+++++|.+..
T Consensus       162 ~~Ll~~ga--d~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         162 SLLLKCGA--DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             HHHHTTTC--CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             HHHHhcCC--cccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            66666665  45556666666666666666666666665543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=241.15  Aligned_cols=193  Identities=23%  Similarity=0.245  Sum_probs=172.3

Q ss_pred             cchhhHHHHHHcCCHHHHHHHH---HhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 009183           25 AAVTDVFSASAYGDFEKLRKFV---EEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAA  101 (541)
Q Consensus        25 ~~~~~L~~A~~~g~~~~v~~ll---~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~  101 (541)
                      +|.||||.|+..|+.+.+.+++   ...+.++|.+|.+|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            4889999999999976655443   3458899999999999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHhCCCCCC------ccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCC-CCCCcHHHHHHHhCcHH
Q 009183          102 VRGSIAVADVLVQNGARVE------AADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD-NEGRSPLHWAAYKGFAD  174 (541)
Q Consensus       102 ~~g~~~~v~~Ll~~g~~~~------~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~L~~A~~~~~~~  174 (541)
                      ..|+.++++.|++.+.+..      .....|.||+|.|+..++.+++.+|+.. +..++..+ ..|.||||.|+..|+.+
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeeccc-CcccccccccCCCCccccccccccHH
Confidence            9999999999999876543      2345689999999999999999999877 66666554 67999999999999999


Q ss_pred             HHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183          175 TIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK  218 (541)
Q Consensus       175 ~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  218 (541)
                      ++++|+++|+|++.+|.+|+||||+|+..++.+++++|++.+.+
T Consensus       160 ~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         160 LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            99999999999999999999999999999999999999988754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.1e-29  Score=232.20  Aligned_cols=205  Identities=29%  Similarity=0.437  Sum_probs=186.2

Q ss_pred             HHHHHHHHHhcCCCCcc-CCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCC
Q 009183           39 FEKLRKFVEEDGASVSR-PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGA  117 (541)
Q Consensus        39 ~~~v~~ll~~~~~~~~~-~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~  117 (541)
                      -|+|+.|++. |.++|. .|.+|.||||+||..|+.+++++|+++|++++.++..+.++++.++..++............
T Consensus         2 ~~~v~~Ll~~-g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQ-GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHC-CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            3788888875 889987 58999999999999999999999999999999999999999999999999888877776553


Q ss_pred             C-CCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcH
Q 009183          118 R-VEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTP  196 (541)
Q Consensus       118 ~-~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tp  196 (541)
                      . ....+..|.++.+.+.........+.|... +.+++.++..|.|||++|+..+..++++.+++.+.+++..|..|.||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~Tp  159 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP  159 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             cccccccccccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccc
Confidence            3 334456788899988888888888877765 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHH
Q 009183          197 LHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL  247 (541)
Q Consensus       197 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L  247 (541)
                      ||+|+..|+.++++.|+++|+  +++.+|..|.|||++|+++|+.+++++|
T Consensus       160 L~~A~~~g~~~~v~~Ll~~ga--d~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         160 LFLAAREGSYEASKALLDNFA--NREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cchhccccHHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999998  6788999999999999999999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=2.3e-28  Score=235.42  Aligned_cols=216  Identities=24%  Similarity=0.342  Sum_probs=187.3

Q ss_pred             HcCCHHHHHHHHHhcCCCCcc---------CCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCC
Q 009183           35 AYGDFEKLRKFVEEDGASVSR---------PDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGS  105 (541)
Q Consensus        35 ~~g~~~~v~~ll~~~~~~~~~---------~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~  105 (541)
                      +....+.++.++.... +.+.         .+.++.|+||.||..|+.++|++|+++|+++|.+|.+|.||||+|+..|+
T Consensus         7 ~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~   85 (291)
T d1s70b_           7 KQKRNEQLKRWIGSET-DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN   85 (291)
T ss_dssp             HHHHHHHHHHHHHTTT-SSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHhCcc-cccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCC
Confidence            3334567777665432 2111         12345699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhc-CC
Q 009183          106 IAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR-DA  184 (541)
Q Consensus       106 ~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-g~  184 (541)
                      .+++++|+++|++....+..+.+||+.|+..++.++++.|++. +...+..|..+.+++++|+..+..+.++.++.. +.
T Consensus        86 ~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~  164 (291)
T d1s70b_          86 VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV  164 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred             ceeeeeecccccccccccccccccccccccccccchhhccccc-CcccccccccCccccccccccccchhcccccccccc
Confidence            9999999999999999999999999999999999999999976 888999999999999999999988888877743 22


Q ss_pred             --------------------------CCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhc
Q 009183          185 --------------------------SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDK  238 (541)
Q Consensus       185 --------------------------~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~  238 (541)
                                                +....+..|.||||.|+..|+.++++.|+++|+  +++.+|..|.||||+|++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~--din~~~~~g~TpL~~A~~~  242 (291)
T d1s70b_         165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY--DVNIKDYDGWTPLHAAAHW  242 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC--CTTCCCTTCCCHHHHHHHT
T ss_pred             ccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccccee--cccccccCCCCHHHHHHHc
Confidence                                      234566779999999999999999999999998  6788999999999999999


Q ss_pred             CchHHHHHHHHhhhhc
Q 009183          239 GHRQVALYLSNAQHMH  254 (541)
Q Consensus       239 ~~~~i~~~L~~~~~~~  254 (541)
                      |+.+++++|++++...
T Consensus       243 g~~~iv~lLl~~Gadv  258 (291)
T d1s70b_         243 GKEEACRILVENLCDM  258 (291)
T ss_dssp             TCHHHHHHHHHTTCCT
T ss_pred             CCHHHHHHHHHCCCCC
Confidence            9999999999988654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.5e-29  Score=234.51  Aligned_cols=213  Identities=22%  Similarity=0.169  Sum_probs=164.5

Q ss_pred             CceEEeeccccC---CCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHH
Q 009183            4 SEIEVVSSTEAI---PNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYII   80 (541)
Q Consensus         4 ~~~~~~~~l~~~---~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll   80 (541)
                      ++.++++.+.+.   +.....++..|.||||.|+..|+.++++.|++. |++++.+|.+|.||||+|+..++.+++++|+
T Consensus        20 ~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll   98 (255)
T d1oy3d_          20 QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVLL   98 (255)
T ss_dssp             TCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHHTTTTCHHHHHHHS
T ss_pred             CCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccc-cccccccccccchhhhhhhccCchHHHHHHH
Confidence            344455555433   334556778899999999999999999999876 9999999999999999999999999999999


Q ss_pred             hCCCCCCCCCC----------CCchHHHHHHH---hC-CHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHH
Q 009183           81 DHGGDVNATDN----------NGQTALHWAAV---RG-SIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIV  146 (541)
Q Consensus        81 ~~g~~~~~~~~----------~g~tpL~~A~~---~g-~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll  146 (541)
                      +.+........          ...+....+..   .. ...........+.+++.+|..|.||||+|++.++.+++++|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll  178 (255)
T d1oy3d_          99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR  178 (255)
T ss_dssp             SSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             hhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchh
Confidence            87654332111          11111111111   11 112222223346777889999999999999999999999999


Q ss_pred             HhcCCCcc-cCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183          147 AKYHADYD-ASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK  218 (541)
Q Consensus       147 ~~~~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  218 (541)
                      +. +.+.+ ..+..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..++.+++++|+++||+
T Consensus       179 ~~-~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         179 DA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             cc-cccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            87 55555 4577899999999999999999999999999999999999999999999999999999999994

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.4e-28  Score=228.27  Aligned_cols=211  Identities=20%  Similarity=0.228  Sum_probs=188.2

Q ss_pred             CceEEeecccc-CCCCCCCCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCc---cCCCCCchHHHHHHHcCcHHHHHHH
Q 009183            4 SEIEVVSSTEA-IPNENQNDNQAAVTDVFSASAYGDFEKLRKFVEEDGASVS---RPDGNGYFALQWAALNNFADIAQYI   79 (541)
Q Consensus         4 ~~~~~~~~l~~-~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~---~~d~~g~t~Lh~A~~~~~~~iv~~L   79 (541)
                      +++++++.+.+ .+......+..|.||||.|+..|+.++++.|++. +++++   ..+..|.+|+|+|+..+..++++.+
T Consensus        11 g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (229)
T d1ixva_          11 NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL   89 (229)
T ss_dssp             TCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTT-CTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhh-hcccccccccccccccccccccccccccccccc
Confidence            45566665544 4567777889999999999999999999998875 77765   4577899999999999999999999


Q ss_pred             HhCCCCCCC--CCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCC
Q 009183           80 IDHGGDVNA--TDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASD  157 (541)
Q Consensus        80 l~~g~~~~~--~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d  157 (541)
                      +..+.+.+.  .+..+.||++.++..++.++++.|++.|.+.+.+|..|.||||+|+..|+.+++++|++..+.+++.+|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d  169 (229)
T d1ixva_          90 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD  169 (229)
T ss_dssp             HSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCC
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccc
Confidence            988876544  566789999999999999999999999999999999999999999999999999999987668899999


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHh-cCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 009183          158 NEGRSPLHWAAYKGFADTIRLLLF-RDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTK  218 (541)
Q Consensus       158 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~  218 (541)
                      .+|.||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+   +.+++++|+++|++
T Consensus       170 ~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         170 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             cccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            999999999999999999999996 59999999999999999998   45899999999983

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=2e-29  Score=240.94  Aligned_cols=242  Identities=20%  Similarity=0.239  Sum_probs=193.7

Q ss_pred             hhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHH--------HhCCCCCCCCCCCCchHHH
Q 009183           27 VTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYI--------IDHGGDVNATDNNGQTALH   98 (541)
Q Consensus        27 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L--------l~~g~~~~~~~~~g~tpL~   98 (541)
                      +|||+.+++.+..+.+.++|.+.+.+... +.+|.||||+||.+|+.++|+.|        ++.|+++|.+|.+|.||||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh   79 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM   79 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeec
Confidence            47888666655555666666655555433 24699999999999999998776        5679999999999999999


Q ss_pred             HHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhc--CCCcccCCCCCCcHHHHHHHhCcH---
Q 009183           99 WAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKY--HADYDASDNEGRSPLHWAAYKGFA---  173 (541)
Q Consensus        99 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~--~~~~~~~d~~g~t~L~~A~~~~~~---  173 (541)
                      +|+..|+.+++++|+++|++++.+|..|.||++.|+..++.+++..+....  ...++..+..+.++.+.+...+..   
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV  159 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccc
Confidence            999999999999999999999999999999999999999999988876531  235667788899999999887753   


Q ss_pred             HHHHHHHhcCC--------CCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHH
Q 009183          174 DTIRLLLFRDA--------SQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVAL  245 (541)
Q Consensus       174 ~~v~~Ll~~g~--------~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~  245 (541)
                      ..+..+.+...        ..+..+..|.||||+|+..++.++++.++.... .+.+.+|..|.|||++|++.|+.++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~-~~~~~~d~~g~tpL~~A~~~g~~~iv~  238 (277)
T d2fo1e1         160 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG-SNKDKQDEDGKTPIMLAAQEGRIEVVM  238 (277)
T ss_dssp             HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC-CCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCcccccccccccccccccccccc-ccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            34444444322        234566779999999999999999998765433 377789999999999999999999999


Q ss_pred             HHHHhhhhcccccccccccccccCCCCchhHHHHH
Q 009183          246 YLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSII  280 (541)
Q Consensus       246 ~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~i  280 (541)
                      +|++.+....          .....|.+|+.+++.
T Consensus       239 ~Ll~~gadin----------~~d~~G~T~L~~A~~  263 (277)
T d2fo1e1         239 YLIQQGASVE----------AVDATDHTARQLAQA  263 (277)
T ss_dssp             HHHHTTCCSS----------CCCSSSCCHHHHHHH
T ss_pred             HHHHCcCCCC----------CcCCCCCCHHHHHHH
Confidence            9999876542          234557888888774

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.1e-28  Score=210.27  Aligned_cols=153  Identities=29%  Similarity=0.382  Sum_probs=127.8

Q ss_pred             hHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHH
Q 009183           62 FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSF  141 (541)
Q Consensus        62 t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~  141 (541)
                      ++||+||..|+.++|+.|+++|++++.+|.+|.||||+|+ .|+.+++++|+++|++++.++..|.++++.++..++.+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7888888888888888888888888888888888888775 678888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCC-CCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183          142 LNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDA-SQGRQDKDGCTPLHWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       142 v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  216 (541)
                      ++.|+.. +.+++..|..|.+|+|+|+..++.+++++|+++++ +.+.+|.+|.||||+|+..|+.+++++|+++|
T Consensus        82 ~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccc-cccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            8887765 77778888888888888888888888888887775 67888888888888888888888888888776

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-26  Score=221.67  Aligned_cols=220  Identities=22%  Similarity=0.262  Sum_probs=185.1

Q ss_pred             CCceEEeeccccCCCCCC-CCCCcchhhHHHHHHcCCHHHHHHHHHhcCCCC----------------------------
Q 009183            3 SSEIEVVSSTEAIPNENQ-NDNQAAVTDVFSASAYGDFEKLRKFVEEDGASV----------------------------   53 (541)
Q Consensus         3 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~----------------------------   53 (541)
                      .+++++++.|.+.+.+.. ..+..|.||||.|+..|+.++++.|++. +...                            
T Consensus        15 ~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (285)
T d1wdya_          15 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFLS   93 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccc-cccccccccccchhhHHHhhcCCccccchhhh
Confidence            467788888887766654 4456799999999999999999988764 3222                            


Q ss_pred             -----ccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCC----------CCCCchHHHHHHHhCCHHHHHHHHhC-CC
Q 009183           54 -----SRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNAT----------DNNGQTALHWAAVRGSIAVADVLVQN-GA  117 (541)
Q Consensus        54 -----~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~----------~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~  117 (541)
                           ...+..|.|+++.|+..++...++.+++...+++..          ...|.||||+|++.|+.+++++|+++ |+
T Consensus        94 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  173 (285)
T d1wdya_          94 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA  173 (285)
T ss_dssp             TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCC
T ss_pred             hcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCC
Confidence                 233456778888888888888888888877665543          34589999999999999999999975 89


Q ss_pred             CCCccccCCChHHHHHHHcC----CHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHh-cCCCCCcccCC
Q 009183          118 RVEAADVHGYRAVHVAAQYG----QTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLF-RDASQGRQDKD  192 (541)
Q Consensus       118 ~~~~~d~~g~t~l~~A~~~g----~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~  192 (541)
                      +++.++..|.++...+...+    ..+++++|+++ |++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|.+
T Consensus       174 ~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~-ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~  252 (285)
T d1wdya_         174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD  252 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTT
T ss_pred             CcccccCCCCcccccccccccchHHHHHHHHHHHC-CCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCC
Confidence            99999999999888776543    34688899986 99999999999999999999999999999997 59999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Q 009183          193 GCTPLHWAALRGNVEACTVLVHAGTKQELTAKDK  226 (541)
Q Consensus       193 g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~  226 (541)
                      |.||||+|+..|+.+++++|+++||  +++++|.
T Consensus       253 G~TpL~~A~~~~~~eiv~~Ll~~GA--d~n~~d~  284 (285)
T d1wdya_         253 GKTALLLAVELKLKKIAELLCKRGA--STDCGDL  284 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSS--CSCCSSC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCC--CCCcccC
Confidence            9999999999999999999999999  6777763

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.7e-27  Score=202.79  Aligned_cols=152  Identities=28%  Similarity=0.395  Sum_probs=111.8

Q ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHH
Q 009183           28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA  107 (541)
Q Consensus        28 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~  107 (541)
                      ..|+.||..|+.+.|+.+|++.+.++|.+|..|.||||+|+. |+.+++++|++++++++..+..|.+|++.|+..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            457888888888888888877777788888888888887754 6777888888888887777777778888888888888


Q ss_pred             HHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhc
Q 009183          108 VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFR  182 (541)
Q Consensus       108 ~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  182 (541)
                      +++.++++|++++.+|..|.||||+|++.|+.+++++|+.  +.+++.+|..|.||||+|+..|+.+++++|+++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            8888777777777777777777777777777777665552  556666666666666666666666666666643

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=201.25  Aligned_cols=154  Identities=23%  Similarity=0.342  Sum_probs=148.2

Q ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHH
Q 009183           28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA  107 (541)
Q Consensus        28 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~  107 (541)
                      ++||.||..|+.+.++.|++. |+++|.+|.+|.||||+|+ .|+.+++++|+++|++++..+..+.+|++.++..++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            789999999999999999985 9999999999999999886 78999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcC
Q 009183          108 VADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRD  183 (541)
Q Consensus       108 ~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  183 (541)
                      +++.|++.+.+++..|..|.+|+|.|++.++.+++++|+++.+.+.+.+|..|.||||+|+..++.+++++|+++|
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999977789999999999999999999999999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=4.2e-29  Score=246.32  Aligned_cols=230  Identities=12%  Similarity=0.049  Sum_probs=173.7

Q ss_pred             CCCCcchhhHHHHHHcCCHHHHHHH--HHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCC--CCCchH
Q 009183           21 NDNQAAVTDVFSASAYGDFEKLRKF--VEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATD--NNGQTA   96 (541)
Q Consensus        21 ~~~~~~~~~L~~A~~~g~~~~v~~l--l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~--~~g~tp   96 (541)
                      .++..+.|+|+.||++|+.+.++.+  |.+.++++|.+|.+|.||||+||.+|+.++|++|+++|++++..+  .+|.||
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            3466789999999999999887654  556799999999999999999999999999999999999998765  358999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCCCCC---ccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccC-------CCCCCcHHHH
Q 009183           97 LHWAAVRGSIAVADVLVQNGARVE---AADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDAS-------DNEGRSPLHW  166 (541)
Q Consensus        97 L~~A~~~g~~~~v~~Ll~~g~~~~---~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-------d~~g~t~L~~  166 (541)
                      ||+|+..|+.+++++|++.|++..   ..+..+.||++.|+++|+.+++++|++. |++++..       ...+.++++.
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PVMLAYAEIHEFEYGEKYVNPFIA  243 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HHHHHHHHHCTTTTTTTTHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC-CCCcchHHHHHHHcCcHhhhHHHH
Confidence            999999999999999999997653   3445677888889999999999999865 4443322       2233456666


Q ss_pred             HHHhCcHHHHHHHHhcCCC--CCcccC-------CCCcHHHHHHHcCCHHHHHHHHHcCCCCC---CcccCCCCCCHHHH
Q 009183          167 AAYKGFADTIRLLLFRDAS--QGRQDK-------DGCTPLHWAALRGNVEACTVLVHAGTKQE---LTAKDKAGLTPTQL  234 (541)
Q Consensus       167 A~~~~~~~~v~~Ll~~g~~--~~~~d~-------~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~---~~~~d~~g~t~l~~  234 (541)
                      +...+..+....+.....+  .+..+.       .+.++|+.|+..|..+++++|++.+....   ....+.+|.||||+
T Consensus       244 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lhl  323 (346)
T d2ajaa1         244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL  323 (346)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHH
T ss_pred             HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHH
Confidence            6655555544433332221  122221       23578999999999999999998876322   23345679999999


Q ss_pred             HHhcCchHHHHHHHHhh
Q 009183          235 AYDKGHRQVALYLSNAQ  251 (541)
Q Consensus       235 A~~~~~~~i~~~L~~~~  251 (541)
                      |+++|+.+++++|++..
T Consensus       324 A~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         324 ALRLGNQGACALLLSIP  340 (346)
T ss_dssp             HHHHTCTTHHHHHTTSH
T ss_pred             HHHcCcHHHHHHHhCCC
Confidence            99999999999998753

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.7e-26  Score=199.25  Aligned_cols=151  Identities=28%  Similarity=0.340  Sum_probs=116.9

Q ss_pred             hHHHHHHHcCcHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHH
Q 009183           62 FALQWAALNNFADIAQYIIDH-GGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTS  140 (541)
Q Consensus        62 t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~  140 (541)
                      +.||.||..|+.++|+.|++. +++++.+|..|.||||+|+ .|+.+++++|++++++++.++..|.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            347788888888888887764 6778788888888888776 47778888888888888777777888888888888888


Q ss_pred             HHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHc
Q 009183          141 FLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHA  215 (541)
Q Consensus       141 ~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  215 (541)
                      +++.+++. +.+++.+|..|.||||+|+..|+.+++++|+ .|++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        83 ~~~~~l~~-~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccc-ccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            77777765 6777777777788888888888888777666 5777777777788888888888888888777764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.2e-26  Score=211.92  Aligned_cols=203  Identities=25%  Similarity=0.281  Sum_probs=180.4

Q ss_pred             EeeccccCCCCCCC-CCCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCC
Q 009183            8 VVSSTEAIPNENQN-DNQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDV   86 (541)
Q Consensus         8 ~~~~l~~~~~~~~~-~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~   86 (541)
                      +++.|.+.+.+.+. .|.+|.||||.||+.|+.++++.|++. +.+++.++..+.++++.++..++.+............
T Consensus         4 ~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (209)
T d1ot8a_           4 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN   82 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCC
T ss_pred             HHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh-ccccccccccccccccccccccccccccccccccccc
Confidence            44445555444443 478899999999999999999988875 9999999999999999999999988887777654433


Q ss_pred             -CCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHH
Q 009183           87 -NATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLH  165 (541)
Q Consensus        87 -~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~  165 (541)
                       ......+.++.+.+.........+.|.+.+++++.++..|.||++.|+..+..+++..++.. +.+++..|..|.||||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          83 LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKDETPLF  161 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHH
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccc-cccccccccccccccc
Confidence             33445688999999999999999999999999999999999999999999999999998876 8889999999999999


Q ss_pred             HHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHH
Q 009183          166 WAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL  212 (541)
Q Consensus       166 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  212 (541)
                      .|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.++|++|
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999999999999999999999999976

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.9e-26  Score=197.55  Aligned_cols=149  Identities=30%  Similarity=0.411  Sum_probs=77.5

Q ss_pred             hHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHH
Q 009183           95 TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFAD  174 (541)
Q Consensus        95 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~  174 (541)
                      ||||.|++.|+.++++.|+++|++++ .|..|.||||+|++.++.+++..++.. .......+..+.++++.++...+.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccc-cccccccccccccccccccccccce
Confidence            45555555555555555555555443 344555555555555555555444433 3333334444445555555555555


Q ss_pred             HHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHH
Q 009183          175 TIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYL  247 (541)
Q Consensus       175 ~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L  247 (541)
                      .++++..++++.+.+|.+|.||||+|+..|+.+++++|+++|+  +++.+|..|.|||++|+++|+.+++++|
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga--d~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA--DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeecccccc--CCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            5555555555555555555555555555555555555555554  4444555555555555555555555544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=9.9e-26  Score=194.93  Aligned_cols=151  Identities=25%  Similarity=0.299  Sum_probs=143.3

Q ss_pred             CchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCH
Q 009183           60 GYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQT  139 (541)
Q Consensus        60 g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~  139 (541)
                      ..||||.||+.|+.++|++|+++|++++ .+..|.||||+|+..++.++++.++.........+..+.++++.++...+.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3499999999999999999999999887 688999999999999999999999999988888888999999999999999


Q ss_pred             HHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHH
Q 009183          140 SFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVL  212 (541)
Q Consensus       140 ~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~L  212 (541)
                      +.++++... +.+.+.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~~-~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeeccccc-CCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999998865 889999999999999999999999999999999999999999999999999999999999876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.5e-25  Score=200.66  Aligned_cols=210  Identities=23%  Similarity=0.291  Sum_probs=181.0

Q ss_pred             CCCchHHHHHHHcCcHHHHHHHHh----CCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHH
Q 009183           58 GNGYFALQWAALNNFADIAQYIID----HGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVA  133 (541)
Q Consensus        58 ~~g~t~Lh~A~~~~~~~iv~~Ll~----~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A  133 (541)
                      ++|.||||+||..|+.++++.|++    .|++++.+|.+|.||||+|+..|+.++++.|+++|++.+..+..|.++++.|
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            379999999999999999998874    8999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHhcC---CCcccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCC-cccCCCCcHHHHHHHcCCHHHH
Q 009183          134 AQYGQTSFLNHIVAKYH---ADYDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQG-RQDKDGCTPLHWAALRGNVEAC  209 (541)
Q Consensus       134 ~~~g~~~~v~~Ll~~~~---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~v  209 (541)
                      ...++.+.++.+.....   ...+..+....++|+.+.........+.|.....+.. ..+..+.+||+.|+..+..+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            99999998887765422   2344556677899999999999999999988776654 4455699999999999999999


Q ss_pred             HHHHHcCCCCCCcccCCCCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCCCCchhHHHH
Q 009183          210 TVLVHAGTKQELTAKDKAGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDIGYAPILFSI  279 (541)
Q Consensus       210 ~~Ll~~g~~~~~~~~d~~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~lg~~~l~~~~  279 (541)
                      +.++++|.  +...+|..|.|||++|+.+|+.+++++|++++....          .....|.+|+.++.
T Consensus       161 ~~~~~~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n----------~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         161 QLLLQHGA--NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS----------LKNCHNDTPLMVAR  218 (228)
T ss_dssp             HHHHHTTC--CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT----------CCCTTSCCTTTTCS
T ss_pred             hhhhhhcc--ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC----------CCCCCCCCHHHHHH
Confidence            99999997  678899999999999999999999999999876543          12345677766553

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.2e-25  Score=217.34  Aligned_cols=183  Identities=21%  Similarity=0.234  Sum_probs=121.4

Q ss_pred             cCCCCccC-CCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCH-------HHHHHHHhCCCCCC
Q 009183           49 DGASVSRP-DGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSI-------AVADVLVQNGARVE  120 (541)
Q Consensus        49 ~~~~~~~~-d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~-------~~v~~Ll~~g~~~~  120 (541)
                      .+.++|.. |.+|.||||+||..|+.++|++|+++|++++.+|..|.||||.|+..++.       ++++++.   .++.
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLI  171 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhh
Confidence            35667755 78888888888888888888888888888888888888888888876642       3444443   3456


Q ss_pred             ccccCCChHHHHHHHcCC----HH--------HHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH---hcCCC
Q 009183          121 AADVHGYRAVHVAAQYGQ----TS--------FLNHIVAKYHADYDASDNEGRSPLHWAAYKGFADTIRLLL---FRDAS  185 (541)
Q Consensus       121 ~~d~~g~t~l~~A~~~g~----~~--------~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll---~~g~~  185 (541)
                      .+|..|.||||+++..+.    ..        ++.++..............+.++++.+........+..+.   ..+..
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence            677888888888876443    22        2233344433444444555556666554444333222111   11233


Q ss_pred             CCcccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCCCCCHHHHHH
Q 009183          186 QGRQDKDGCTPLHWAALRGNVEACTVLVHAGTKQELTAKDKAGLTPTQLAY  236 (541)
Q Consensus       186 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~d~~g~t~l~~A~  236 (541)
                      +|.+|.+|+||||+|++.|+.++|++|+++|+  +++.+|+.|.|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GA--d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGA--DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC--CTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHcC
Confidence            68899999999999999999999999999998  77889999999999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.3e-24  Score=208.13  Aligned_cols=172  Identities=20%  Similarity=0.208  Sum_probs=124.5

Q ss_pred             CCcchhhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCc-------HHHHHHHHhCCCCCCCCCCCCch
Q 009183           23 NQAAVTDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNF-------ADIAQYIIDHGGDVNATDNNGQT   95 (541)
Q Consensus        23 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-------~~iv~~Ll~~g~~~~~~~~~g~t   95 (541)
                      |+.|.||||.||+.|+.++|+.|++. |++++.+|..|.||||.|+..++       .++++++.+   .++.+|..|.|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCC
Confidence            77899999999999999999999965 89999999999999999998765       255555543   45667788999


Q ss_pred             HHHHHHHhCC----HH--------HHHHHHhCCCCC-CccccCCChHHHHHHHcCCHHHHH-----HHHHhcCCCcccCC
Q 009183           96 ALHWAAVRGS----IA--------VADVLVQNGARV-EAADVHGYRAVHVAAQYGQTSFLN-----HIVAKYHADYDASD  157 (541)
Q Consensus        96 pL~~A~~~g~----~~--------~v~~Ll~~g~~~-~~~d~~g~t~l~~A~~~g~~~~v~-----~Ll~~~~~~~~~~d  157 (541)
                      |||.|+..+.    ..        ++..+.+.+... ......+.++++.+........+.     .++.   ..+|.+|
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~in~~D  256 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA---NMLNAQD  256 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH---HTTTCCC
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh---cCccCCC
Confidence            9999886554    22        344555555333 334455556666655444433322     2232   2478899


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHH
Q 009183          158 NEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAA  201 (541)
Q Consensus       158 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~  201 (541)
                      ..|.||||+|++.|+.+++++|+++|++++.+|..|.||||+|+
T Consensus       257 ~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         257 SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999999999999999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.2e-24  Score=175.72  Aligned_cols=57  Identities=25%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCC
Q 009183           63 ALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVE  120 (541)
Q Consensus        63 ~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  120 (541)
                      +||+|+..|+.++|++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++
T Consensus         6 ~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~   62 (125)
T d1bi7b_           6 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN   62 (125)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccc
Confidence            333333333333333333333333333333333333322 233333333333333333

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.1e-24  Score=176.51  Aligned_cols=120  Identities=26%  Similarity=0.316  Sum_probs=101.2

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC-cHHHHHHHhC
Q 009183           93 GQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGR-SPLHWAAYKG  171 (541)
Q Consensus        93 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~L~~A~~~~  171 (541)
                      +.++||+|+..|+.+++++|+++|++++.+|..|.||+|.|+ .|+.+++++|+++ |.+++.+|..+. ||||+|++.|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccc-ccccccccccccccccccccccc
Confidence            457889999999999999999888888888888888888664 6888888888876 888888887766 5888888888


Q ss_pred             cHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHH
Q 009183          172 FADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVH  214 (541)
Q Consensus       172 ~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~  214 (541)
                      +.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+.
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            8888888888888888888888888888888888888888764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.1e-24  Score=176.31  Aligned_cols=105  Identities=30%  Similarity=0.445  Sum_probs=54.4

Q ss_pred             hHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCcHHHHHHHhCcHH
Q 009183           95 TALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYHADYDASDNEGRSPLHWAAYKGFAD  174 (541)
Q Consensus        95 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~~~~~  174 (541)
                      |||++|++.|+.++++.|+++|++++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~-g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHS-SCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccc-cceeeecccccccchhhhhhcCchh
Confidence            455555555555555555555555555555555555555555555544444443 4445555555555555555555555


Q ss_pred             HHHHHHhcCCCCCcccCCCCcHHHHH
Q 009183          175 TIRLLLFRDASQGRQDKDGCTPLHWA  200 (541)
Q Consensus       175 ~v~~Ll~~g~~~~~~d~~g~tpLh~A  200 (541)
                      ++++|+++|++++.+|.+|.||||+|
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHH
Confidence            55555555555555555555555554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=4.2e-25  Score=217.42  Aligned_cols=223  Identities=13%  Similarity=0.039  Sum_probs=162.6

Q ss_pred             CccCCCCCchHHHHHHHcCcHHHHHH---HHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccc--cCCC
Q 009183           53 VSRPDGNGYFALQWAALNNFADIAQY---IIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAAD--VHGY  127 (541)
Q Consensus        53 ~~~~d~~g~t~Lh~A~~~~~~~iv~~---Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d--~~g~  127 (541)
                      ++.+|..|.||||+||.+|+.+++++   |+++|++++.++.+|.||||+||+.|+.+++++|++.|++++..+  ..|.
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY  162 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCC
Confidence            34667889999999999999887776   789999999999999999999999999999999999999998876  4689


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCc---ccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccC-------CCCcHH
Q 009183          128 RAVHVAAQYGQTSFLNHIVAKYHADY---DASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDK-------DGCTPL  197 (541)
Q Consensus       128 t~l~~A~~~g~~~~v~~Ll~~~~~~~---~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-------~g~tpL  197 (541)
                      ||||+|++.|+.+++++|++. +.+.   +..+.++.||+|.|+..|+.+++++|++.|++++..+.       .+.+++
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  241 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPF  241 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHH
T ss_pred             ChhHHHHHHhhHHHHHHHHHc-CCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHH
Confidence            999999999999999999986 4433   33445667888889999999999999999887764432       234666


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcccCC-------CCCCHHHHHHhcCchHHHHHHHHhhhhcccccccccccccccCC
Q 009183          198 HWAALRGNVEACTVLVHAGTKQELTAKDK-------AGLTPTQLAYDKGHRQVALYLSNAQHMHRNHWGDKICGRKTSDI  270 (541)
Q Consensus       198 h~A~~~g~~~~v~~Ll~~g~~~~~~~~d~-------~g~t~l~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~l  270 (541)
                      +.+...+..+....+.....+......+.       .+.++++.|...++.+++++|.+.+......  .   .......
T Consensus       242 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~--~---~~~~~~~  316 (346)
T d2ajaa1         242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA--P---TATIPGD  316 (346)
T ss_dssp             HHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGS--S---CCSSTTC
T ss_pred             HHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhc--c---cccCCCC
Confidence            66665555555444443333222222222       2346888899999999999998765432210  0   0112234


Q ss_pred             CCchhHHHHHH
Q 009183          271 GYAPILFSIII  281 (541)
Q Consensus       271 g~~~l~~~~i~  281 (541)
                      +.+|+.++.-.
T Consensus       317 g~T~LhlA~~~  327 (346)
T d2ajaa1         317 ANELLRLALRL  327 (346)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCcHHHHHHHc
Confidence            67888877653

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.3e-23  Score=172.51  Aligned_cols=105  Identities=28%  Similarity=0.392  Sum_probs=58.2

Q ss_pred             hHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHH
Q 009183           62 FALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSF  141 (541)
Q Consensus        62 t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~  141 (541)
                      |||++|+.+|+.++|++|+++|++++.++.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHhcCCCcccCCCCCCcHHHHH
Q 009183          142 LNHIVAKYHADYDASDNEGRSPLHWA  167 (541)
Q Consensus       142 v~~Ll~~~~~~~~~~d~~g~t~L~~A  167 (541)
                      +++|+++ |++++.+|.+|.||||+|
T Consensus        84 v~~Ll~~-Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          84 VKLLLSK-GADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHTT-CCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhcc-cccceeeCCCCCCHHHHH
Confidence            5555543 555555555555555554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.5e-22  Score=169.11  Aligned_cols=119  Identities=27%  Similarity=0.377  Sum_probs=83.9

Q ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCCccCCCCCchHHHHHHHcCcHHHHHHHHhCCCCCCCCCCCCchHHHHHHHhCCHH
Q 009183           28 TDVFSASAYGDFEKLRKFVEEDGASVSRPDGNGYFALQWAALNNFADIAQYIIDHGGDVNATDNNGQTALHWAAVRGSIA  107 (541)
Q Consensus        28 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~tpL~~A~~~g~~~  107 (541)
                      +.|+.|+..|+.+.++.|++. |+++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            567777777777777766654 6777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhCCCCCCcccc-CCChHHHHH--HHcCCHHHHHHHHH
Q 009183          108 VADVLVQNGARVEAADV-HGYRAVHVA--AQYGQTSFLNHIVA  147 (541)
Q Consensus       108 ~v~~Ll~~g~~~~~~d~-~g~t~l~~A--~~~g~~~~v~~Ll~  147 (541)
                      ++++|+++|++++.++. .+.|+++.+  ++.|+.+++++|++
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            77777777777776553 356665544  45566777777664

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.2e-21  Score=168.15  Aligned_cols=124  Identities=16%  Similarity=0.277  Sum_probs=109.5

Q ss_pred             chhhHHHHHHcCCHHHHHHHHHhcCCCCccC------CCCCchHHHHHHHc---CcHHHHHHHHhCCCCCCCCCCCCchH
Q 009183           26 AVTDVFSASAYGDFEKLRKFVEEDGASVSRP------DGNGYFALQWAALN---NFADIAQYIIDHGGDVNATDNNGQTA   96 (541)
Q Consensus        26 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~------d~~g~t~Lh~A~~~---~~~~iv~~Ll~~g~~~~~~~~~g~tp   96 (541)
                      ....|+.|++++++..+.+++.+ +.+++.+      +..|.||||+|+..   ++.+++++|+++|++++.+|.+|.||
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~Tp   84 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccc
Confidence            44568899999999999998876 5555543      67799999999975   67899999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCCCCCccccCCChHHHHHHHcCCHHHHHHHHHhcC
Q 009183           97 LHWAAVRGSIAVADVLVQNGARVEAADVHGYRAVHVAAQYGQTSFLNHIVAKYH  150 (541)
Q Consensus        97 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~l~~A~~~g~~~~v~~Ll~~~~  150 (541)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|++.|+.++++.|++...
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999987533

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.4e-22  Score=166.30  Aligned_cols=65  Identities=34%  Similarity=0.548  Sum_probs=25.6

Q ss_pred             cccCCCCCCcHHHHHHHhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 009183          153 YDASDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAGT  217 (541)
Q Consensus       153 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g~  217 (541)
                      ++.+|.+|.||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+..|+.+++++|+++|+
T Consensus        27 ~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga   91 (130)
T d1ycsb1          27 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA   91 (130)
T ss_dssp             CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHHHcCC
Confidence            33333333333333333333333333333333334344444444444444444444444444433

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.7e-20  Score=157.99  Aligned_cols=118  Identities=20%  Similarity=0.220  Sum_probs=60.3

Q ss_pred             HHHHHhCCHHHHHHHHhCCCCCCcc------ccCCChHHHHHHHc---CCHHHHHHHHHhcCCCcccCCCCCCcHHHHHH
Q 009183           98 HWAAVRGSIAVADVLVQNGARVEAA------DVHGYRAVHVAAQY---GQTSFLNHIVAKYHADYDASDNEGRSPLHWAA  168 (541)
Q Consensus        98 ~~A~~~g~~~~v~~Ll~~g~~~~~~------d~~g~t~l~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~L~~A~  168 (541)
                      ..|++.+++..+..++..|+|++.+      +..|.||||+|++.   ++.+++++|++. |++++.+|..|.||||+|+
T Consensus        11 ~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          11 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhhhhcccccccc
Confidence            3445566666666666655554432      33444555555442   334444444443 4445555555555555555


Q ss_pred             HhCcHHHHHHHHhcCCCCCcccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 009183          169 YKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNVEACTVLVHAG  216 (541)
Q Consensus       169 ~~~~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  216 (541)
                      ..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|++.+
T Consensus        90 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          90 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            555555555555555555555555555555555555555555555443

>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L40e
domain: Ribosomal protein L40e
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.98  E-value=0.17  Score=31.70  Aligned_cols=23  Identities=26%  Similarity=0.959  Sum_probs=20.7

Q ss_pred             ccccccccccCCCCCcCCccchh
Q 009183          365 SQLCPTCKIIRPVRSKHCPACKC  387 (541)
Q Consensus       365 ~~~C~~C~~~kp~Rs~HC~~C~~  387 (541)
                      ..+|..|...-|+|+..|+.|+.
T Consensus        19 k~ICrkC~AR~p~rAt~CRKCg~   41 (56)
T d2ayja1          19 KKVCRKCGALNPIRATKCRRCHS   41 (56)
T ss_dssp             CEEETTTCCEECTTCSSCTTTCC
T ss_pred             hHHHhhccccCCccccccccCCC
Confidence            37899999999999999998864