Citrus Sinensis ID: 009189

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540

MGEYRSSDDDYDYDYDYYDDDDEVDFVDDDENAAELEAAVEPEIPPNSCPSSKVITKESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAKAGLTIVETDDVSSSQVSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLVRARDSDLADKFDRFMLESYIEDNKRVKWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGSDHTWTSIAGHSCGRYKEDREKETESAKRSLERYIHYYSRYEAHRDSSKLESKMKETMEDNIKILEECSTASSKDFVWLFNGVDRLFRSRRVLAYSYPFAYYMFDGDLFADEMTKGEREMKQNLFEDQQQQFEANIEKLSSFLDEKFHLYNEDEIKDLKLRVIALSATTDNLCRNLYECIETDLLGSLKHSVHEIAPYNTNGIEKASLPSYQDT

cccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccEEcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEccccccEEccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc

ccccccccccccccccccccccccccccccccccHcccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHccccccccccccccccccccEccEEEcccccHccccccccccHHHHHHHHHHHHEHcccccEEEEcccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccEEcccccccccEEEEccccccEEEEccccEEEEcccccccccccHHHHHHHHHHcccccccHHHHHHcccccccccccEEccccccEEEEEcccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc

mgeyrssdddydydydyyddddevdfvdddeNAAELEAavepeippnscpsskvitKESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAKAGLTIvetddvsssqvsssyccnicfddvsleeittmdcghyfcnscwtEHFIVKINEGQSRRITCMEhkcnaicdeskirclvrardsdladKFDRFMLESYIednkrvkwcpsvphcgnaIRIEVDELREVEcacglqfcfrcsyeahspcscymwdlwskkcqdeseTVNYIAVHTkhcpkcqklveknggcnlvscicgqpfcwlcgaatgsdhtwtsiaghscgrykedrEKETESAKRSLERYIHYYSRYEAHRDSSKLESKMKETMEDNIKILEECSTASSKDFVWLFNGVDRLFRSRRVLAysypfayymfdgdlfaDEMTKGEREMKQNLFEDQQQQFEANIEKLSSFLDEKFHlynedeikDLKLRVIALSATTDNLCRNLYECIETDLLgslkhsvheiapyntngiekaslpsyqdt

mgeyrssdddydYDYDYYDDDDEVDFVDDDENAAELeaavepeippnscpsskVITKESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAKAGLTIVETDdvsssqvsssyCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNaicdeskircLVRARDSDLADKFDRFMLEsyiednkrvkwcpsvPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGSDHTWTSiaghscgrykedreketesakrslERYIHYysryeahrdsskLESKMKETMEDNIKILEecstasskdFVWLFNGVDRLFRSRRVLAYSYPFAYYMFDGDLFADEMTKGEREMKQNLFEDQQQQFEANIEKLSSFLDEKFHLYNEDEIKDLKLRVIALSATTDNLCRNLYECIETDLLGSLKHSVHEIapyntngiekaslpsyqdt

MGEYRSSdddydydydyyddddevdfvdddenaaeleaavepeippNSCPSSKVITKESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAKAGLTIVETDDvsssqvsssYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLVRARDSDLADKFDRFMLESYIEDNKRVKWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGSDHTWTSIAGHSCGRYKEDREKETESAKRSLERYIHYYSRYEAHRDSSKLESKMKETMEDNIKILEECSTASSKDFVWLFNGVDRLFRSRRVLAYSYPFAYYMFDGDLFADEMTKGEREMKQNLFEDQQQQFEANIEKLSSFLDEKFHLYNEDEIKDLKLRVIALSATTDNLCRNLYECIETDLLGSLKHSVHEIAPYNTNGIEKASLPSYQDT

**********YDYDYDYYDDDDEVDF*******************************ESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAKAGLTIVETDDVSSSQVSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLVRARDSDLADKFDRFMLESYIEDNKRVKWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGSDHTWTSIAGHSCGR*****************RYIHYYSRY********************IKILEECSTASSKDFVWLFNGVDRLFRSRRVLAYSYPFAYYMFDGDLFAD***********************NIEKLSSFLDEKFHLYNEDEIKDLKLRVIALSATTDNLCRNLYECIETDLLGSLKHSVHEIAPYNT**************

******S***********DDDDEVDFVDDDENAAELE*********NSCPSSKVITKESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAK*******************YCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLVRARDSDLADKFDRFMLESYIEDNKRVKWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKK*QDESETVNYIAVHTKHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGSDHTWTSIAGHSCGRYK************SLERYIHYYSRYEAHRDSSKLESKMKETME***********ASSKDFVWLFNGVDRLFRSRRVLAYSYPFAYYMFDGDLFADEMTKGEREMKQNLFEDQQQQFEANIEKLSSFLDEKFHLYNEDEIKDLKLRVIALSATTDNLCRNLYECIETDLLGSLK*************************

********DDYDYDYDYYDDDDEVDFVDDDENAAELEAAVEPEIPPNSCPSSKVITKESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAKAGLTIVET*********SSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLVRARDSDLADKFDRFMLESYIEDNKRVKWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGSDHTWTSIAGHSC***************RSLERYIHYYSRYEAHRDSSKLESKMKETMEDNIKILEECSTASSKDFVWLFNGVDRLFRSRRVLAYSYPFAYYMFDGDLFADEMTKGEREMKQNLFEDQQQQFEANIEKLSSFLDEKFHLYNEDEIKDLKLRVIALSATTDNLCRNLYECIETDLLGSLKHSVHEIAPYNTNGIEKASLPSYQDT

**********************************************NSCPSSKVITKESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAKAGLTIVETD******VSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLVRARDSDLADKFDRFMLESYIEDNKRVKWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGSDHTWTSIAGHSCGRYKEDREKETESAKRSLERYIHYYSRYEAHRDSSKLESKMKETMEDNIKILEECSTASSKDFVWLFNGVDRLFRSRRVLAYSYPFAYYMFDGDLFADEMTKGEREMKQNLFEDQQQQFEANIEKLSSFLDEKFHLYNEDEIKDLKLRVIALSATTDNLCRNLYECIETDLLGSLKHSVHE********************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		540	2.2.26 [Sep-21-2011]
Q84RR2		593	Probable E3 ubiquitin-pro	yes	no	0.944	0.860	0.629	0.0
Q949V6		597	Probable E3 ubiquitin-pro	no	no	0.957	0.865	0.604	0.0
Q9LVX0		537	Probable E3 ubiquitin-pro	no	no	0.920	0.925	0.538	1e-162
Q9LVW9		529	Putative E3 ubiquitin-pro	no	no	0.898	0.916	0.531	1e-158
Q94981		503	Protein ariadne-1 OS=Dros	yes	no	0.755	0.811	0.334	9e-62
Q9SKC4		514	Probable E3 ubiquitin-pro	no	no	0.870	0.914	0.308	6e-60
Q9Y4X5		557	E3 ubiquitin-protein liga	yes	no	0.761	0.737	0.305	6e-59
Q9Z1K5		555	E3 ubiquitin-protein liga	yes	no	0.761	0.740	0.305	6e-59
A2VEA3		555	E3 ubiquitin-protein liga	yes	no	0.761	0.740	0.305	6e-59
B1H1E4		529	E3 ubiquitin-protein liga	yes	no	0.761	0.776	0.302	1e-58

>sp\|Q84RR2\|ARI2_ARATH Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1	Back alignment and function desciption

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/523 (62%), Positives = 399/523 (76%), Gaps = 13/523 (2%)

Query: 14  DYDYYDDDDEVDFVDDDENAAELEAAVEPEIPPNSCPSS-KVITKESLLAAQMEDLIRVM 72
           DY Y  D + ++ +D+DE+ +         IP +S  ++ KVITKESLLAAQ EDL RVM
Sbjct: 11  DYYYSSDQESLNGIDNDESVS---------IPVSSRSNTVKVITKESLLAAQREDLRRVM 61

Query: 73  DLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAKAGLTIVETDDVSSSQVSSSYC 132
           +LLS+KE HARTLLIHYRWDVEK+ AVLVE GK+ LF+ AG+T++E     SS   SS  
Sbjct: 62  ELLSVKEHHARTLLIHYRWDVEKLFAVLVEKGKDSLFSGAGVTLLENQSCDSSVSGSSSM 121

Query: 133 CN--ICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESK 190
            +  IC +DV   ++T MDCGH FCN+CWT HF VKINEGQS+RI CM HKCNAICDE  
Sbjct: 122 MSCDICVEDVPGYQLTRMDCGHSFCNNCWTGHFTVKINEGQSKRIICMAHKCNAICDEDV 181

Query: 191 IRCLVRARDSDLADKFDRFMLESYIEDNKRVKWCPSVPHCGNAIRIEVDELREVECACGL 250
           +R LV     DLA+KFDRF+LESYIEDNK VKWCPS PHCGNAIR+E DEL EVEC+CGL
Sbjct: 182 VRALVSKSQPDLAEKFDRFLLESYIEDNKMVKWCPSTPHCGNAIRVEDDELCEVECSCGL 241

Query: 251 QFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKNGGCNLVS 310
           QFCF CS +AHSPCSC MW+LW KKC DESETVN+I VHTK CPKC K VEKNGGCNLV+
Sbjct: 242 QFCFSCSSQAHSPCSCVMWELWRKKCFDESETVNWITVHTKPCPKCHKPVEKNGGCNLVT 301

Query: 311 CICGQPFCWLCGAATGSDHTWTSIAGHSCGRYKEDREKETESAKRSLERYIHYYSRYEAH 370
           C+C Q FCWLCG ATG DHTW  I+GHSCGR++ED+EK+ E AKR L+RY+HY++RY+AH
Sbjct: 302 CLCRQSFCWLCGEATGRDHTWARISGHSCGRFQEDKEKQMERAKRDLKRYMHYHNRYKAH 361

Query: 371 RDSSKLESKMKETMEDNIKILEECSTASSKDFVWLFNGVDRLFRSRRVLAYSYPFAYYMF 430
            DSSKLE+K+   +   + I E+      KDF W  NG+ RLFRSRRVL+YSYPFA+YMF
Sbjct: 362 IDSSKLEAKLSNNISKKVSISEK-RELQLKDFSWATNGLHRLFRSRRVLSYSYPFAFYMF 420

Query: 431 DGDLFADEMTKGEREMKQNLFEDQQQQFEANIEKLSSFLDEKFHLYNEDEIKDLKLRVIA 490
             +LF DEM+  ERE+KQNLFEDQQQQ EAN+EKLS FL+E F  + +D++  ++++VI 
Sbjct: 421 GDELFKDEMSSEEREIKQNLFEDQQQQLEANVEKLSKFLEEPFDQFADDKVMQIRIQVIN 480

Query: 491 LSATTDNLCRNLYECIETDLLGSLKHSVHEIAPYNTNGIEKAS 533
           LS   D LC N+YECIE DLLGSL+  +H I PY +NGIE+AS
Sbjct: 481 LSVAVDTLCENMYECIENDLLGSLQLGIHNITPYRSNGIERAS 523

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q949V6\|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana GN=ARI1 PE=2 SV=1	Back alignment and function description

>sp\|Q9LVX0\|ARI3_ARATH Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana GN=ARI3 PE=2 SV=1	Back alignment and function description

>sp\|Q9LVW9\|ARI4_ARATH Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana GN=ARI4 PE=5 SV=2	Back alignment and function description

>sp\|Q94981\|ARI1_DROME Protein ariadne-1 OS=Drosophila melanogaster GN=ari-1 PE=1 SV=2	Back alignment and function description

>sp\|Q9SKC4\|ARI10_ARATH Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana GN=ARI10 PE=2 SV=1	Back alignment and function description

>sp\|Q9Y4X5\|ARI1_HUMAN E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1 SV=2	Back alignment and function description

>sp\|Q9Z1K5\|ARI1_MOUSE E3 ubiquitin-protein ligase ARIH1 OS=Mus musculus GN=Arih1 PE=2 SV=3	Back alignment and function description

>sp\|A2VEA3\|ARI1_BOVIN E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus GN=ARIH1 PE=2 SV=1	Back alignment and function description

>sp\|B1H1E4\|ARI1_XENTR E3 ubiquitin-protein ligase arih1 OS=Xenopus tropicalis GN=arih1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		540
302142421		555	unnamed protein product [Vitis vinifera]	0.9	0.875	0.705	0.0
225458418		564	PREDICTED: probable E3 ubiquitin-protein	0.9	0.861	0.705	0.0
449455196		589	PREDICTED: probable E3 ubiquitin-protein	0.955	0.876	0.653	0.0
225428572		589	PREDICTED: probable E3 ubiquitin-protein	0.961	0.881	0.641	0.0
224103473		591	predicted protein [Populus trichocarpa]	0.961	0.878	0.646	0.0
356545317		580	PREDICTED: probable E3 ubiquitin-protein	0.959	0.893	0.622	0.0
255538524		525	Protein ariadne-1, putative [Ricinus com	0.905	0.931	0.655	0.0
255556141		592	Protein ariadne-1, putative [Ricinus com	0.964	0.880	0.644	0.0
356538827		580	PREDICTED: probable E3 ubiquitin-protein	0.959	0.893	0.613	0.0
18086414		593	At2g16090/F7H1.11 [Arabidopsis thaliana]	0.944	0.860	0.629	0.0

>gi\|302142421\|emb\|CBI19624.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/489 (70%), Positives = 408/489 (83%), Gaps = 3/489 (0%)

Query: 48  SCPSSKVITKESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKER 107
           S  SSKVITKESLL AQ EDL RVMDLL L E HAR+LLIH RWDVE+VLAVLVE GKE+
Sbjct: 39  SATSSKVITKESLLTAQKEDLHRVMDLLPLGEHHARSLLIHCRWDVERVLAVLVEKGKEQ 98

Query: 108 LFAKAGLTIVETDDVSSSQVSSSYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKI 167
           L+A AG+T+VE DD+S S+ SS   CNIC DDVS  E+T MDCGHYFCN+CWT +FIVKI
Sbjct: 99  LYADAGVTVVEHDDLSLSKFSSPLTCNICVDDVSTNEMTIMDCGHYFCNNCWTGYFIVKI 158

Query: 168 NEGQSRRITCMEHKCNAICDESKIRCLVRARDSDLADKFDRFMLESYIEDNKRVKWCPSV 227
           N+GQSRRI CM +KCNAICDE+KIR LV ARD +LA++FDRF+LESYIEDN+RVKWCPSV
Sbjct: 159 NDGQSRRIRCMAYKCNAICDEAKIRKLVSARDPNLAERFDRFLLESYIEDNRRVKWCPSV 218

Query: 228 PHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIA 287
           PHCGNAIR+EVDE  EVECACGLQFCF CS EAHSPCSC MW+LW KK QD SETVN+I 
Sbjct: 219 PHCGNAIRVEVDEFCEVECACGLQFCFNCSSEAHSPCSCRMWELWGKKSQDGSETVNWIT 278

Query: 288 VHTKHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGSDHTWTSIAGHSCGRYKEDRE 347
           VHTK CPKCQK VEKNGGCNLVSCICGQ FCWLCG ATG DHTWT+I GHSCGRYKE+  
Sbjct: 279 VHTKACPKCQKPVEKNGGCNLVSCICGQSFCWLCGGATGRDHTWTNITGHSCGRYKEEDV 338

Query: 348 KETESAKRSLERYIHYYSRYEAHRDSSKLESKMKETMEDNIKILEECSTASSKDFVWLFN 407
            + E AKR L RY+HY+ RY+AH DS KLE K+KET+++NI  LEE  +A  KDF WL +
Sbjct: 339 NKLEHAKRELSRYVHYHDRYKAHTDSFKLEIKLKETIQENISKLEERDSA-FKDFSWLTS 397

Query: 408 GVDRLFRSRRVLAYSYPFAYYMFDGDLFADEMTKGEREMKQNLFEDQQQQFEANIEKLSS 467
           G++RLFRSRRVL+YSYPFA++MF GDLF +EMT+ E+E+KQ+LFE+QQQQ EANIEKLS 
Sbjct: 398 GLNRLFRSRRVLSYSYPFAFFMF-GDLFNNEMTEAEKEIKQHLFEEQQQQLEANIEKLSL 456

Query: 468 FLDEKFHLYNEDEIKDLKLRVIALSATTDNLCRNLYECIETDLLGSLKHSVHEIAPYNTN 527
           F++E FH Y ED++ + +++++ +SA TDNLC+ +YECIE DLLG L+ ++H IAPY + 
Sbjct: 457 FIEEPFHQYTEDKVAETRMKIMNMSAITDNLCKKMYECIENDLLGPLQQAIHIIAPYKSK 516

Query: 528 GIEKAS-LP 535
           G+EKAS LP
Sbjct: 517 GVEKASELP 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225458418\|ref\|XP_002283665.1\| PREDICTED: probable E3 ubiquitin-protein ligase ARI2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449455196\|ref\|XP_004145339.1\| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Cucumis sativus] gi\|449471519\|ref\|XP_004153333.1\| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Cucumis sativus] gi\|449502370\|ref\|XP_004161621.1\| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225428572\|ref\|XP_002284665.1\| PREDICTED: probable E3 ubiquitin-protein ligase ARI1 isoform 1 [Vitis vinifera] gi\|297741410\|emb\|CBI32541.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224103473\|ref\|XP_002313070.1\| predicted protein [Populus trichocarpa] gi\|222849478\|gb\|EEE87025.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356545317\|ref\|XP_003541090.1\| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like [Glycine max]	Back alignment and taxonomy information

>gi\|255538524\|ref\|XP_002510327.1\| Protein ariadne-1, putative [Ricinus communis] gi\|223551028\|gb\|EEF52514.1\| Protein ariadne-1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255556141\|ref\|XP_002519105.1\| Protein ariadne-1, putative [Ricinus communis] gi\|223541768\|gb\|EEF43316.1\| Protein ariadne-1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356538827\|ref\|XP_003537902.1\| PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|18086414\|gb\|AAL57664.1\| At2g16090/F7H1.11 [Arabidopsis thaliana] gi\|20855959\|gb\|AAM26640.1\| At2g16090/F7H1.11 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		540
TAIR\|locus:2052920		593	ARI2 "ARIADNE 2" [Arabidopsis	0.888	0.809	0.656	4.2e-182
TAIR\|locus:2116184		597	ARI1 "ARIADNE 1" [Arabidopsis	0.892	0.807	0.623	2.8e-176
TAIR\|locus:2089104		537	ARI3 "ARIADNE 3" [Arabidopsis	0.883	0.888	0.546	6e-151
FB\|FBgn0017418		503	ari-1 "ariadne" [Drosophila me	0.761	0.817	0.325	7.6e-64
POMBASE\|SPAC328.02		504	SPAC328.02 "ubiquitin-protein	0.727	0.779	0.317	2.3e-62
DICTYBASE\|DDB_G0286961		520	rbrA "IBR zinc finger-containi	0.781	0.811	0.321	1.6e-61
FB\|FBgn0036082		511	CG12362 [Drosophila melanogast	0.762	0.806	0.314	2.1e-61
ASPGD\|ASPL0000014787		511	AN3689 [Emericella nidulans (t	0.794	0.839	0.329	5.5e-61
UNIPROTKB\|A2VEA3		555	ARIH1 "E3 ubiquitin-protein li	0.762	0.742	0.310	5.5e-61
UNIPROTKB\|Q9Y4X5		557	ARIH1 "E3 ubiquitin-protein li	0.762	0.739	0.310	5.5e-61

TAIR\|locus:2052920 ARI2 "ARIADNE 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1767 (627.1 bits), Expect = 4.2e-182, P = 4.2e-182
 Identities = 317/483 (65%), Positives = 377/483 (78%)

Query:    53 KVITKESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAKA 112
             KVITKESLLAAQ EDL RVM+LLS+KE HARTLLIHYRWDVEK+ AVLVE GK+ LF+ A
Sbjct:    42 KVITKESLLAAQREDLRRVMELLSVKEHHARTLLIHYRWDVEKLFAVLVEKGKDSLFSGA 101

Query:   113 GLTIVETD--DXXXXXXXXXYCCNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEG 170
             G+T++E    D           C+IC +DV   ++T MDCGH FCN+CWT HF VKINEG
Sbjct:   102 GVTLLENQSCDSSVSGSSSMMSCDICVEDVPGYQLTRMDCGHSFCNNCWTGHFTVKINEG 161

Query:   171 QSRRITCMEHKCNAICDESKIRCLVRARDSDLADKFDRFMLESYIEDNKRVKWCPSVPHC 230
             QS+RI CM HKCNAICDE  +R LV     DLA+KFDRF+LESYIEDNK VKWCPS PHC
Sbjct:   162 QSKRIICMAHKCNAICDEDVVRALVSKSQPDLAEKFDRFLLESYIEDNKMVKWCPSTPHC 221

Query:   231 GNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHT 290
             GNAIR+E DEL EVEC+CGLQFCF CS +AHSPCSC MW+LW KKC DESETVN+I VHT
Sbjct:   222 GNAIRVEDDELCEVECSCGLQFCFSCSSQAHSPCSCVMWELWRKKCFDESETVNWITVHT 281

Query:   291 KHCPKCQKLVEKNGGCNLVSCICGQPFCWLCGAATGSDHTWTSIAGHSCGRYKEDREKET 350
             K CPKC K VEKNGGCNLV+C+C Q FCWLCG ATG DHTW  I+GHSCGR++ED+EK+ 
Sbjct:   282 KPCPKCHKPVEKNGGCNLVTCLCRQSFCWLCGEATGRDHTWARISGHSCGRFQEDKEKQM 341

Query:   351 ESAKRSLERYIHYYSRYEAHRDSSKLESKMKETMEDNIKILEECSTASSKDFVWLFNGVD 410
             E AKR L+RY+HY++RY+AH DSSKLE+K+   +   + I E+      KDF W  NG+ 
Sbjct:   342 ERAKRDLKRYMHYHNRYKAHIDSSKLEAKLSNNISKKVSISEK-RELQLKDFSWATNGLH 400

Query:   411 RLFRSRRVLAYSYPFAYYMFDGDLFADEMTKGEREMKQNLFEDQQQQFEANIEKLSSFLD 470
             RLFRSRRVL+YSYPFA+YMF  +LF DEM+  ERE+KQNLFEDQQQQ EAN+EKLS FL+
Sbjct:   401 RLFRSRRVLSYSYPFAFYMFGDELFKDEMSSEEREIKQNLFEDQQQQLEANVEKLSKFLE 460

Query:   471 EKFHLYNEDEIKDLKLRVIALSATTDNLCRNLYECIETDLLGSLKHSVHEIAPYNTNGIE 530
             E F  + +D++  ++++VI LS   D LC N+YECIE DLLGSL+  +H I PY +NGIE
Sbjct:   461 EPFDQFADDKVMQIRIQVINLSVAVDTLCENMYECIENDLLGSLQLGIHNITPYRSNGIE 520

Query:   531 KAS 533
             +AS
Sbjct:   521 RAS 523

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR\|locus:2116184 ARI1 "ARIADNE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2089104 ARI3 "ARIADNE 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0017418 ari-1 "ariadne" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

POMBASE\|SPAC328.02 SPAC328.02 "ubiquitin-protein ligase involved in sporulation" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0286961 rbrA "IBR zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0036082 CG12362 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000014787 AN3689 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|A2VEA3 ARIH1 "E3 ubiquitin-protein ligase ARIH1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y4X5 ARIH1 "E3 ubiquitin-protein ligase ARIH1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84RR2	ARI2_ARATH	6, ., 3, ., 2, ., -	0.6290	0.9444	0.8600	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		540
smart00647		64	smart00647, IBR, In Between Ring fingers	7e-15
pfam01485		63	pfam01485, IBR, IBR domain	6e-12
pfam13923		45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	7e-04

>gnl\|CDD\|214763 smart00647, IBR, In Between Ring fingers	Back alignment and domain information

 Score = 69.0 bits (169), Expect = 7e-15
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 204 DKFDRFMLESYIEDNKRVKWCPSVPHCGNAIRIEVDEL-REVEC-ACGLQFCFRCSYEAH 261
           +K++R +LESY+E N  +KWCP+ P C  AI +  +E    V C  CG  FCFRC    H
Sbjct: 1   EKYERLLLESYVESNPDLKWCPA-PDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59

Query: 262 SPCSC 266
           SP SC
Sbjct: 60  SPVSC 64

the domains occurs between pairs og RING fingers. Length = 64

>gnl\|CDD\|216524 pfam01485, IBR, IBR domain	Back alignment and domain information

>gnl\|CDD\|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		540
KOG1815		444	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
KOG1814		445	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
KOG1812		384	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
KOG0006		446	consensus E3 ubiquitin-protein ligase (Parkin prot	99.89
smart00647		64	IBR In Between Ring fingers. the domains occurs be	99.2
PF01485		64	IBR: IBR domain; InterPro: IPR002867 Zinc finger (	99.08
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.77
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.33
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.32
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.3
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	98.25
PF13445		43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.18
KOG0320		187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.15
smart00647		64	IBR In Between Ring fingers. the domains occurs be	98.08
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.04
PF01485		64	IBR: IBR domain; InterPro: IPR002867 Zinc finger (	98.02
PF14634		44	zf-RING_5: zinc-RING finger domain	97.94
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	97.93
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	97.85
KOG0823		230	consensus Predicted E3 ubiquitin ligase [Posttrans	97.81
PHA02926		242	zinc finger-like protein; Provisional	97.79
KOG0317		293	consensus Predicted E3 ubiquitin ligase, integral	97.79
KOG2164		513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.72
TIGR00599		397	rad18 DNA repair protein rad18. This family is bas	97.68
PHA02929		238	N1R/p28-like protein; Provisional	97.66
KOG2177		386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.61
KOG4367		699	consensus Predicted Zn-finger protein [Function un	97.57
KOG0287		442	consensus Postreplication repair protein RAD18 [Re	97.36
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	97.06
PF04564		73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.06
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	96.95
COG5540		374	RING-finger-containing ubiquitin ligase [Posttrans	96.66
PF11789		57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.65
COG5574		271	PEX10 RING-finger-containing E3 ubiquitin ligase [	96.64
PF14835		65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.48
KOG0804		493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.4
PF12678		73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	96.29
PF14555		43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	96.12
KOG1002		791	consensus Nucleotide excision repair protein RAD16	96.08
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	95.91
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	95.87
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	95.82
KOG2879		298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.6
KOG1814		445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.3
PF11793		70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	95.09
KOG4159		398	consensus Predicted E3 ubiquitin ligase [Posttrans	95.01
COG5243		491	HRD1 HRD ubiquitin ligase complex, ER membrane com	94.83
KOG0824		324	consensus Predicted E3 ubiquitin ligase [Posttrans	94.79
KOG0006		446	consensus E3 ubiquitin-protein ligase (Parkin prot	94.38
KOG1812		384	consensus Predicted E3 ubiquitin ligase [Posttrans	94.23
COG5152		259	Uncharacterized conserved protein, contains RING a	94.14
KOG0311		381	consensus Predicted E3 ubiquitin ligase [Posttrans	94.1
PF14570		48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.1
PF10571		26	UPF0547: Uncharacterised protein family UPF0547; I	93.92
KOG2660		331	consensus Locus-specific chromosome binding protei	93.07
KOG1039		344	consensus Predicted E3 ubiquitin ligase [Posttrans	93.03
KOG0802		543	consensus E3 ubiquitin ligase [Posttranslational m	93.01
PF12861		85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	92.65
KOG1645		463	consensus RING-finger-containing E3 ubiquitin liga	92.15
PRK00420		112	hypothetical protein; Validated	92.13
KOG4185		296	consensus Predicted E3 ubiquitin ligase [Posttrans	92.01
PF05883		134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	91.21
PF13240		23	zinc_ribbon_2: zinc-ribbon domain	90.27
smart00744		49	RINGv The RING-variant domain is a C4HC3 zinc-fing	90.25
KOG0826		357	consensus Predicted E3 ubiquitin ligase involved i	90.0
KOG1428		3738	consensus Inhibitor of type V adenylyl cyclases/Ne	89.91
KOG4265		349	consensus Predicted E3 ubiquitin ligase [Posttrans	89.07
KOG4692		489	consensus Predicted E3 ubiquitin ligase [Posttrans	88.54
KOG0828		636	consensus Predicted E3 ubiquitin ligase [Posttrans	88.11
KOG4739		233	consensus Uncharacterized protein involved in syna	87.77
COG5220		314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	87.74
KOG1785		563	consensus Tyrosine kinase negative regulator CBL [	87.65
KOG1734		328	consensus Predicted RING-containing E3 ubiquitin l	87.29
KOG2817		394	consensus Predicted E3 ubiquitin ligase [Posttrans	87.28
KOG1001		674	consensus Helicase-like transcription factor HLTF/	86.81
smart00661		52	RPOL9 RNA polymerase subunit 9.	85.77
PF13248		26	zf-ribbon_3: zinc-ribbon domain	85.56
KOG4172		62	consensus Predicted E3 ubiquitin ligase [Posttrans	85.01
PF00643		42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	84.87
PHA00626		59	hypothetical protein	84.8
KOG1813		313	consensus Predicted E3 ubiquitin ligase [Posttrans	84.25
KOG0823		230	consensus Predicted E3 ubiquitin ligase [Posttrans	83.83
PF00627		37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	83.61
KOG0297		391	consensus TNF receptor-associated factor [Signal t	83.57
KOG1815		444	consensus Predicted E3 ubiquitin ligase [Posttrans	83.5
KOG0317		293	consensus Predicted E3 ubiquitin ligase, integral	82.9
cd00021		39	BBOX B-Box-type zinc finger; zinc binding domain (	82.46
PF14952		44	zf-tcix: Putative treble-clef, zinc-finger, Zn-bin	81.62
PF04641		260	Rtf2: Rtf2 RING-finger	80.28

>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=2.2e-67  Score=561.63  Aligned_cols=431  Identities=40%  Similarity=0.757  Sum_probs=384.1

Q ss_pred             eeeCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChHHHHHHHHhhCHHHHHHHcCCCcccCCCCCCcCCccccc
Q 009189           53 KVITKESLLAAQMEDLIRVMDLLSLKEQHARTLLIHYRWDVEKVLAVLVEYGKERLFAKAGLTIVETDDVSSSQVSSSYC  132 (540)
Q Consensus        53 ~vlt~~~i~~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~  132 (540)
                      .|+|.+++...+.++|..|+++|+++..+|++||.+|.|+++++++.|++ +++.++...|+....       ......+
T Consensus         1 ~vl~~~~~~~~~~~~i~~~~~~ls~~~~~~~~ll~~~~W~~~kl~~~~~~-~~~~~~~~~g~~~~~-------~~~~~~~   72 (444)
T KOG1815|consen    1 EVLTPDDIAALMREDIIEVSDILSLSHAVARILLAHFCWNVEKLLEEWVE-DEETGCFFVGLLLWP-------KKKGDVQ   72 (444)
T ss_pred             CCCchHhhhHHhHhhHHHHHHhhcCCHHHHHHHHHhcCcchHHHHHHHHh-cCcchhhhccccccC-------CCCcccc
Confidence            37899999999999999999999999999999999999999999999994 667777788876443       1235789


Q ss_pred             cccccccCCCCceeecCCCCcccHHHHHHHHHHhhhcCCcccccccCcccccccchhHHHHhhccCChhHHHHHHHHHHH
Q 009189          133 CNICFDDVSLEEITTMDCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCNAICDESKIRCLVRARDSDLADKFDRFMLE  212 (540)
Q Consensus       133 C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~i~CP~~~C~~~~~~~~i~~ll~~~~~e~~eky~~~~~~  212 (540)
                      |.||++.++. .+..+.|||.||..||..|+..+|..|....|+||.++|.+.+....|..+++.  ++..++|.+++++
T Consensus        73 c~ic~~~~~~-~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~~s~--~~~~~ky~~~i~~  149 (444)
T KOG1815|consen   73 CGICVESYDG-EIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKLVSD--KEDKEKYQRYILR  149 (444)
T ss_pred             CCcccCCCcc-hhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeeecCC--HHHHHHHHHHHHH
Confidence            9999999865 678889999999999999999999888754599999999999999999999982  2589999999999


Q ss_pred             HhhhcCCccccCCCCCCCCCeEEeccCccceeecCCCceecccccCccCCCCCchhhHHHhHHhhhhhHHHHHHHhccCC
Q 009189          213 SYIEDNKRVKWCPSVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYMWDLWSKKCQDESETVNYIAVHTKH  292 (540)
Q Consensus       213 ~~v~~~~~~~~CP~~p~C~~~i~~~~~~~~~v~C~C~~~fC~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~i~~~~k~  292 (540)
                      +||+.+..++|||+ |+|+.++.........|.|.||+.|||.|+.+||.|.+|..+..|..+..+++++.+||..|+++
T Consensus       150 syve~~~~lkwCP~-~~C~~av~~~~~~~~~v~C~~g~~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~  228 (444)
T KOG1815|consen  150 SYVEDNVPLKWCPA-PGCGLAVKFGSLESVEVDCGCGHEFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKE  228 (444)
T ss_pred             HHHhcCCccccCCC-CCCCceeeccCCCccceeCCCCchhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCcc
Confidence            99999999999996 99999998755556679999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccceeecCCCCeeEec---cCccccccccccccCCCCccccCCccCCCCccchHHH-HHHHHHHHHHHHHHHHHHH
Q 009189          293 CPKCQKLVEKNGGCNLVSCI---CGQPFCWLCGAATGSDHTWTSIAGHSCGRYKEDREKE-TESAKRSLERYIHYYSRYE  368 (540)
Q Consensus       293 CP~C~~~IeK~~GCnhm~C~---C~~~FCw~C~~~~~~~H~~~~~~g~~C~~~~~~~~~~-~~~~~~~l~ry~~y~~r~~  368 (540)
                      ||+|..+|||++|||||+|.   |++.|||+|++.| .+|+...  ++.||+|....... +..++..+.||.|||.||+
T Consensus       229 CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~-~~h~~~~--~~~c~~~~~~~~~~~~~~a~~~l~r~~~~~~~~~  305 (444)
T KOG1815|consen  229 CPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASL-SDHGSST--GYSCNRYVDGKSKSARSKARRSLKRYTHYYNRWM  305 (444)
T ss_pred             CCCcccchhccCCccccccccCCcCCeeceeeeccc-ccccccc--eeeeeeeechhhhhHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999999994   9999999999888 5675443  79999999877655 7888999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHH-HHHHHHhcCCCcchhhhHHHHHHHHHHHHHHhhhhcceeeecccCcchhhhcchhhHHHH
Q 009189          369 AHRDSSKLESKMKETMEDN-IKILEECSTASSKDFVWLFNGVDRLFRSRRVLAYSYPFAYYMFDGDLFADEMTKGEREMK  447 (540)
Q Consensus       369 ~h~~s~k~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~a~~~l~~~r~~L~~sy~~~yy~~~~~~~~~~~~~~~~~~~  447 (540)
                      +|..+++++..+...+++. +..+.......+.+++|+.+++.+|.++|++|+|||+|+||+..+             .+
T Consensus       306 ~~q~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~r~~l~~s~~~~~~~~~~-------------~~  372 (444)
T KOG1815|consen  306 EHQVSLKLEGKLLSKVEEVKKPKLSDSLSLSWIDVQFLRDAGDVLVECRRTLKWTYAYAYYLSEN-------------NK  372 (444)
T ss_pred             hhhhhhhhhhhhHHHHHHHhhhhhhcccCeeeeeeeeechhHHHHHhhhhhhhhhhhhhhhhccc-------------ch
Confidence            9999999998877666543 334433344568899999999999999999999999999998732             44


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009189          448 QNLFEDQQQQFEANIEKLSSFLDEKFHLYNEDEIKDLKLRVIALSATTDNLCRNLYECIETDLL  511 (540)
Q Consensus       448 ~~lfe~~q~~le~~~e~L~~~le~~~~~~~~~~~~~~r~~~~~l~~~~~~~~~~~~~~~e~~l~  511 (540)
                      +++||++|.+++..+|.|+..+++++...+..++.++|+++.+++.++++++.+++..+++||.
T Consensus       373 ~~~fe~~q~~~~~~~e~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  436 (444)
T KOG1815|consen  373 RNLFEDNQTDLESAVEPLSSCLEESLKDISSETLAEFKQKLTDLTSYVRNRFENLLKHLEEGLE  436 (444)
T ss_pred             hhhhHHHHHHHhhhhhhhHHHhccccccCCcccHHHHHhhccccchhhhhHHHHHHHHHHhccc
Confidence            5899999999999999999999998876777889999999999999999999999999999986

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00647 IBR In Between Ring fingers	Back alignment and domain information

>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A	Back alignment and domain information

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00647 IBR In Between Ring fingers	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>TIGR00599 rad18 DNA repair protein rad18	Back alignment and domain information

>PHA02929 N1R/p28-like protein; Provisional	Back alignment and domain information

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]	Back alignment and domain information

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C	Back alignment and domain information

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B	Back alignment and domain information

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]	Back alignment and domain information

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A	Back alignment and domain information

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A	Back alignment and domain information

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]	Back alignment and domain information

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B	Back alignment and domain information

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines	Back alignment and domain information

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]	Back alignment and domain information

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger	Back alignment and domain information

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK00420 hypothetical protein; Validated	Back alignment and domain information

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length	Back alignment and domain information

>PF13240 zinc_ribbon_2: zinc-ribbon domain	Back alignment and domain information

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins	Back alignment and domain information

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]	Back alignment and domain information

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>smart00661 RPOL9 RNA polymerase subunit 9	Back alignment and domain information

>PF13248 zf-ribbon_3: zinc-ribbon domain	Back alignment and domain information

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PHA00626 hypothetical protein	Back alignment and domain information

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []	Back alignment and domain information

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]	Back alignment and domain information

>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction	Back alignment and domain information

>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding	Back alignment and domain information

>PF04641 Rtf2: Rtf2 RING-finger	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		540
1wd2_A		60	Solution Structure Of The C-Terminal Ring From A Ri		1e-04

>pdb|1WD2|A Chain A, Solution Structure Of The C-Terminal Ring From A Ring-Ibr- Ring (Triad) Motif Length = 60

Back alignment and structure

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 285 YIAVHTKHCPKCQKLVEKNGGCNLVSC---ICGQPFCWLC-GAATGSDHTWTSIAGHSCG 340
           +IA +TK CPKC   +EK+GGCN + C    C   FCW+C G        W     ++C 
Sbjct: 1   WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAW-----YNCN 55
Query: 341 RYKE 344
           RY E
Sbjct: 56  RYNE 59

PyMOL of 1wd2

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		540
1wim_A		94	KIAA0161 protein; ring finger domain, UBCM4-intera	2e-20
1wd2_A		60	Ariadne-1 protein homolog; ring, IBR, triad, zinc	4e-15
2ct7_A		86	Ring finger protein 31; IBR, structural genomics,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	8e-05
2jmo_A		80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	8e-04

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94	Back alignment and structure

 Score = 85.3 bits (211), Expect = 2e-20
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 128 SSSYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKCN--A 184
           S S  C +C  +  +E++TT+  C   FC  C  ++  + I EG    I+C +  C    
Sbjct: 3   SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62

Query: 185 ICDESKIRCLVRARDSDLADKFDRFMLESYIEDN 218
              E++I C+V    +++  ++ +   E     +
Sbjct: 63  HLQENEIECMV---AAEIMQRYKKLQFERSGPSS 93

PyMOL of 1wim

>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 60	Back alignment and structure

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 Length = 86	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 89/626 (14%), Positives = 178/626 (28%), Gaps = 183/626 (29%)

Query: 1   MGE--YRSSD------DDYDYDYDYYDDDD---------EVDFV---DDDENAAEL---- 36
            GE  Y+  D      D +  ++D  D  D         E+D +    D  +        
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 37  ---------EAAVEPEIPPNSCPSSKVITKESLLAA-QMEDLIRVMDLLSLKEQHART-- 84
                    +  VE  +  N          + L++  + E     M      EQ  R   
Sbjct: 71  LLSKQEEMVQKFVEEVLRINY---------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 85  ---LLIHY-RWDVEKVLAV------------LVEYGKERLFAKAGLTIVETDDVSSSQVS 128
              +   Y    ++  L +            ++  G       +G T V  D   S +V 
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSGKTWVALDVCLSYKVQ 177

Query: 129 SSYCCNI-------CFDDVSLEEITTMDCGHYFCNSC----WTEHFIVKINEGQS--RRI 175
                 I       C    ++ E+          N       + +  ++I+  Q+  RR+
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 176 TCMEHKCNA------ICDES-----KIRC--LVRARDSDLADKFDRFMLESYIEDNKRVK 222
              +   N       + +        + C  L+  R   + D            D+  + 
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 223 WCP--SVPHCGNAIRIEVDELREVECACGLQFCFRCSYEAHSPCSCYM-----------W 269
             P          +     +L                    +P    +           W
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTT-------------NPRRLSIIAESIRDGLATW 344

Query: 270 DLWSKKCQDESETVNYIAVHTKHCPKCQKLVEKNGGCNLV-----SCICGQPFCWLCGAA 324
           D W     D+  T+   +++     + +K+ ++     L      + I       +    
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-----LSVFPPSAHIPTILLSLI---- 395

Query: 325 TGSDHTWTSIAGHSCGRYKEDREKETESAKRSL------ERYIHYYSRYEAHRDSSKLES 378
                 W  +         +      +  K SL      E  I   S Y       +L+ 
Sbjct: 396 ------WFDVI------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIY------LELKV 437

Query: 379 KMKETMEDNIKILEECSTASSKDFVWLF-NGVDRLFRSRRVLAYSYPFAYYMFDGDLFAD 437
           K++     +  I++  +   + D   L    +D+ F       YS+   +++ + +    
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-------YSH-IGHHLKNIEH--P 487

Query: 438 EMTKGEREMKQNL-FEDQQ-----QQFEANIEKLSSFLDEKF---HLYNEDEIKDLKLRV 488
           E     R +  +  F +Q+       + A+   L++    KF   ++ + D   +  +  
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 489 IALSATTDNLCR---NLYECIETDLL 511
           I      D L +   NL     TDLL
Sbjct: 548 I-----LDFLPKIEENLICSKYTDLL 568

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133	Back alignment and structure

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} Length = 80	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		540
1wd2_A		60	Ariadne-1 protein homolog; ring, IBR, triad, zinc	99.74
1wim_A		94	KIAA0161 protein; ring finger domain, UBCM4-intera	99.67
2ct7_A		86	Ring finger protein 31; IBR, structural genomics,	99.27
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.04
2jmo_A		80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	99.04
3hcs_A		170	TNF receptor-associated factor 6; cross-brace, bet	98.77
2ecv_A		85	Tripartite motif-containing protein 5; metal bindi	98.57
3ztg_A		92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.56
2ecw_A		85	Tripartite motif-containing protein 30; metal bind	98.55
2yu4_A		94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.54
2egp_A		79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.53
3hct_A		118	TNF receptor-associated factor 6; cross-brace, bet	98.53
2ct2_A		88	Tripartite motif protein 32; zinc-finger protein H	98.53
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	98.52
2ysj_A		63	Tripartite motif-containing protein 31; ring-type	98.51
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	98.51
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	98.51
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	98.49
1rmd_A		116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.49
3knv_A		141	TNF receptor-associated factor 2; cross-brace, alt	98.46
2kr4_A		85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.44
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	98.44
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.42
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	98.41
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	98.4
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	98.39
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.39
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	98.38
1jm7_A		112	BRCA1, breast cancer type 1 susceptibility protein	98.36
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.36
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	98.35
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.35
3l11_A		115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.34
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	98.32
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	98.32
2ecj_A		58	Tripartite motif-containing protein 39; TRIM39, ri	98.3
2ea6_A		69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.29
2kiz_A		69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.26
2kre_A		100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.24
1z6u_A		150	NP95-like ring finger protein isoform B; structura	98.24
2ckl_A		108	Polycomb group ring finger protein 4; BMI1, RING1B	98.23
1wgm_A		98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.18
1bor_A		56	Transcription factor PML; proto-oncogene, nuclear	98.14
2c2l_A		281	CHIP, carboxy terminus of HSP70-interacting protei	98.13
3htk_C		267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.12
1jm7_B		117	BARD1, BRCA1-associated ring domain protein 1; rin	98.11
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	98.1
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.09
2ep4_A		74	Ring finger protein 24; zinc binding, ubiquitin, E	98.08
1v87_A		114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.06
2l0b_A		91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.05
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.02
1x4j_A		75	Ring finger protein 38; structural genomics, NPPSF	98.02
2ecn_A		70	Ring finger protein 141; RNF141, ring domain, zinc	98.01
2f42_A		179	STIP1 homology and U-box containing protein 1; cha	98.01
2ect_A		78	Ring finger protein 126; metal binding protein, st	98.0
4ic3_A		74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	97.89
2ecg_A		75	Baculoviral IAP repeat-containing protein 4; BIRC4	97.8
2vje_A		64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.72
2y1n_A		389	E3 ubiquitin-protein ligase; ligase-transferase co	97.6
2ecl_A		81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.6
2yho_A		79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	97.57
2vje_B		63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.52
4ap4_A		133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.51
2d8s_A		80	Cellular modulator of immune recognition; C-MIR, m	97.41
3dpl_R		106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.35
2ea5_A		68	Cell growth regulator with ring finger domain prot	97.34
2ct7_A		86	Ring finger protein 31; IBR, structural genomics,	97.34
3t6p_A		345	Baculoviral IAP repeat-containing protein 2; ring,	96.96
2jmo_A		80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	96.96
4a0k_B		117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	96.71
2bay_A		61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	96.56
3k1l_B		381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.32
2ct0_A		74	Non-SMC element 1 homolog; ring domain, structural	95.42
2jun_A		101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.98
1v92_A		46	NSFL1 cofactor P47; 3-helix bundle, recombination;	94.26
2cs3_A		93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	94.09
3vk6_A		101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	93.93
1vyx_A		60	ORF K3, K3RING; zinc-binding protein, ring domain,	93.74
2jun_A		101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.49
1wd2_A		60	Ariadne-1 protein homolog; ring, IBR, triad, zinc	92.43
2dal_A		62	Protein KIAA0794; FAS associted factor 1, UBA-like	92.24
1wj7_A		104	Hypothetical protein (RSGI RUH-015); UBA domain, u	91.02
2di0_A		71	Activating signal cointegrator 1 complex subunit 2	89.72
2dam_A		67	ETEA protein; KIAA0887, UBA-like domain, structura	88.88
1fre_A		42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	87.78
1z96_A		40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	87.61
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	87.53
2did_A		53	Tripartite motif protein 39; ZF-B-box domian, Zn b	85.96
2yvr_A		50	Transcription intermediary factor 1-beta; ZF-B_BOX	85.2
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	85.13
3e21_A		45	HFAF1, FAS-associated factor 1; UBA, alternative s	85.0
3vk6_A		101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	84.95
2yrg_A		59	Tripartite motif-containing protein 5; B-box domai	84.71
2dzl_A		66	Protein FAM100B; UBA-like domain, structural genom	84.59
2csv_A		72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	83.49
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	82.98
3nw0_A		238	Non-structural maintenance of chromosomes element	82.73
3ddt_A		48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	82.04
1x4j_A		75	Ring finger protein 38; structural genomics, NPPSF	81.68
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	81.67
2dja_A		84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	81.48
2d8u_A		64	Ubiquitin ligase TRIM63; tripartite motif-containi	81.03

>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

Probab=99.74  E-value=2.4e-19  Score=136.02  Aligned_cols=56  Identities=46%  Similarity=1.037  Sum_probs=48.9

Q ss_pred             HHHhccCCCCCCccceeecCCCCeeEec---cCccccccccccccCCCCccccCCccCCCCcc
Q 009189          285 YIAVHTKHCPKCQKLVEKNGGCNLVSCI---CGQPFCWLCGAATGSDHTWTSIAGHSCGRYKE  344 (540)
Q Consensus       285 ~i~~~~k~CP~C~~~IeK~~GCnhm~C~---C~~~FCw~C~~~~~~~H~~~~~~g~~C~~~~~  344 (540)
                      ||.+++|+||+|+.+|||++|||||+|+   |+++|||+|+++|. .|+   ...|+||+|++
T Consensus         1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~-~~~---~~~y~C~~y~~   59 (60)
T 1wd2_A            1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE-PHG---SAWYNCNRYNE   59 (60)
T ss_dssp             CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG-GGG---TSSSSSCSCCC
T ss_pred             CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc-cCC---CccccCCCccc
Confidence            6888999999999999999999999995   99999999999985 342   13489999975

PyMOL of 1wd2

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}	Back alignment and structure

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}	Back alignment and structure

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}	Back alignment and structure

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}	Back alignment and structure

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A	Back alignment and structure

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2	Back alignment and structure

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B	Back alignment and structure

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1	Back alignment and structure

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}	Back alignment and structure

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}	Back alignment and structure

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B	Back alignment and structure

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}	Back alignment and structure

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A	Back alignment and structure

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2	Back alignment and structure

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2	Back alignment and structure

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}	Back alignment and structure

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1	Back alignment and structure

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C	Back alignment and structure

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A	Back alignment and structure

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A	Back alignment and structure

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*	Back alignment and structure

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A	Back alignment and structure

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*	Back alignment and structure

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}	Back alignment and structure

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A	Back alignment and structure

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4	Back alignment and structure

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B	Back alignment and structure

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}	Back alignment and structure

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}	Back alignment and structure

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A	Back alignment and structure

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}	Back alignment and structure

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}	Back alignment and structure

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3	Back alignment and structure

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3	Back alignment and structure

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}	Back alignment and structure

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3	Back alignment and structure

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}	Back alignment and structure

>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1	Back alignment and structure

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4	Back alignment and structure

>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1	Back alignment and structure

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A	Back alignment and structure

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B	Back alignment and structure

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}	Back alignment and structure

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}	Back alignment and structure

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}	Back alignment and structure

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A	Back alignment and structure

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A	Back alignment and structure

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		540
d1wima_		94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	3e-15
d1wd2a_		60	g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Ho	4e-14
d2ct7a1		73	g.44.1.4 (A:8-80) Ring finger protein 31 {Human (H	3e-09
d2ct7a1		73	g.44.1.4 (A:8-80) Ring finger protein 31 {Human (H	3e-09
d1rmda2		86	g.44.1.1 (A:1-86) V(D)J recombination activating p	0.002

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94	Back information, alignment and structure


class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 3e-15
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 128 SSSYCCNICFDDVSLEEITTM-DCGHYFCNSCWTEHFIVKINEGQSRRITCMEHKC--NA 184
           S S  C +C  +  +E++TT+  C   FC  C  ++  + I EG    I+C +  C    
Sbjct: 3   SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62

Query: 185 ICDESKIRCLVRARDSDLADKFDRFMLESYIE 216
              E++I C+V    +++  ++ +   E    
Sbjct: 63  HLQENEIECMV---AAEIMQRYKKLQFERSGP 91

PyMOL of d1wima_

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 60	Back information, alignment and structure

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Length = 73	Back information, alignment and structure

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Length = 73	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		540
d1wd2a_		60	Ariadne-1 protein homolog {Human (Homo sapiens) [T	99.76
d1wima_		94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	99.6
d2ct7a1		73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	99.03
d2ct7a1		73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	99.01
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	98.62
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.55
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.48
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	98.47
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	98.47
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.31
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	98.21
d2baya1		56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.2
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.19
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.14
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.12
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.06
d1wgma_		98	Ubiquitin conjugation factor E4A {Human (Homo sapi	97.65
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.34
d3dplr1		88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.22
d1v92a_		46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	95.45
d2cs3a1		80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	95.42
d2csva1		59	Tripartite motif-containing protein 29 {Human (Hom	93.64
d1wd2a_		60	Ariadne-1 protein homolog {Human (Homo sapiens) [T	92.6
d1frea_		39	Nuclear factor XNF7 {African clawed frog (Xenopus	92.49
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	91.52
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	90.51
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	89.32
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	88.36
d2dida1		40	Tripartite motif-containing protein 39 {Human (Hom	87.74
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	84.14
d2dq5a1		47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	82.79
d1wfha_		64	Zinc finger A20 and AN1 domains containing protein	80.02

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Ariadne-1 protein homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.4e-20  Score=138.61  Aligned_cols=56  Identities=46%  Similarity=1.044  Sum_probs=49.0

Q ss_pred             HHHhccCCCCCCccceeecCCCCeeEec---cCccccccccccccCCCCccccCCccCCCCcc
Q 009189          285 YIAVHTKHCPKCQKLVEKNGGCNLVSCI---CGQPFCWLCGAATGSDHTWTSIAGHSCGRYKE  344 (540)
Q Consensus       285 ~i~~~~k~CP~C~~~IeK~~GCnhm~C~---C~~~FCw~C~~~~~~~H~~~~~~g~~C~~~~~  344 (540)
                      ||..|||+||+|+.+|||++|||||+|+   |+++|||+|+++|.. |+   ..+|+|++|++
T Consensus         1 wi~~ntK~CP~C~~~ieK~~GCnhM~C~~~~C~~~fCw~C~~~~~~-~~---~~~~~C~~~~e   59 (60)
T d1wd2a_           1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP-HG---SAWYNCNRYNE   59 (60)
T ss_dssp             CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG-GG---TSSSSSCSCCC
T ss_pred             CchhcCcCCCCCCCeEEECCCCCCeEeCCCCCCCeEECCCCCcccc-CC---CCCCCCcCCcc
Confidence            7889999999999999999999999995   999999999999854 32   24578999975

PyMOL of d1wd2a_

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure