Citrus Sinensis ID: 009192

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
MPSATSSFEQNPIEKISNNHSPSPRNLTRRCGMNIMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAGKAQILACDVQEDAKEDENVRSAVVDESVSVPSPTQKELTNIASVVNASINGHRSTATEVNV
ccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccHHHHHHcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEcccccccEEEcccccccEEEcc
mpsatssfeqnpiekisnnhspsprnltrrcgmniMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLnglcgamdpicgqaygaKNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLksylssqgitlpIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECygkegkwkeggwweqGVSDWLRLLKlcgpcclttcleWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTrvsnelganrprlAYRSAYVSLGVALVSGCVGALTmvgargvwgplfshdkgIIRGVKKALLLMAVIEALNfpltvcggivrgtarpWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAGKAQILACDVqedakedenvrsavvdesvsvpsptqkeLTNIASVVNASinghrstatevnv
mpsatssfeqnpiekisnnhspsprnLTRRCGMNIMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECYgkegkwkeggWWEQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTstrvsnelganrpRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAGKAQILACDVQEDAKEDENVrsavvdesvsvpsptqkeltnIASVVnasinghrstatevnv
MPSATSSFEQNPIEKISNNHSPSPRNLTRRCGMNIMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFlgrlgelhlaggalaFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRllhktllmailllllATVPITFFWLNVDKILIHFGQQEDISAVSKRYlfyllpsllvtsllsplksylssQGITLPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDllvvillalyllvTECYgkegkwkeggwweQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVlafkaalglaglligffigMVACLALLLTFIARINWDDEAGKAQILACDVQEDAKEDENVRSAVVDESVSVPSPTQKELTNIASVVNASINGHRSTATEVNV
******************************CGMNIMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGL********GQAYGAKNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAGKAQILACDV****************************************************
********************************MNIMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAGKA***********************************************************
**********NPIEKISNNHSPSPRNLTRRCGMNIMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAGKAQILACDVQEDAKEDENVRSAVVDESVSVPSPTQKELTNIASVVNASINGHR********
********************************MNIMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAGKAQILACDVQ*****************VSVPSPTQKELTNIASVVNASINGHRSTAT****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MPSATSSFEQNPIEKISNNHSPSPRNLTRRCGMNIMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAGKAQILACDVQEDAKEDENVRSAVVDESVSVPSPTQKELTNIASVVNASINGHRSTATEVNV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query540 2.2.26 [Sep-21-2011]
Q9SIA5476 MATE efflux family protei no no 0.801 0.909 0.333 1e-57
Q8RWF5483 MATE efflux family protei no no 0.811 0.906 0.324 3e-56
Q9SIA3476 MATE efflux family protei no no 0.809 0.918 0.322 2e-54
Q9SIA4476 MATE efflux family protei no no 0.807 0.915 0.342 1e-53
Q9SIA1477 MATE efflux family protei no no 0.811 0.918 0.310 1e-53
Q8GXM8476 MATE efflux family protei no no 0.8 0.907 0.321 5e-53
Q8K0H1567 Multidrug and toxin extru yes no 0.855 0.814 0.315 3e-50
Q5I0E9566 Multidrug and toxin extru yes no 0.853 0.814 0.310 2e-49
Q9LUH3469 MATE efflux family protei no no 0.798 0.918 0.308 2e-47
Q5RFD2570 Multidrug and toxin extru yes no 0.814 0.771 0.314 9e-47
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function desciption
 Score =  224 bits (572), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 226/447 (50%), Gaps = 14/447 (3%)

Query: 42  ELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLC 101
           ELK   RLA P+  + +  +    I+    G  GEL L+G ALA +F NVTGFS++ GL 
Sbjct: 27  ELKRVSRLAAPMATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMCGLV 86

Query: 102 GAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPITF----FWLNVDKILIHFGQQED 157
           GA++ +CGQAYGAK +  +      AI     + +PI F     WL ++KILI  GQ  +
Sbjct: 87  GALETLCGQAYGAKQYEKIGTYAYSAI----ASNIPICFLISILWLYIEKILISLGQDPE 142

Query: 158 ISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPV--NILLVK 215
           IS ++  Y F+L+P+L   +++ PL  +L +QG+ +P++FT+  +L FHV V   ++ + 
Sbjct: 143 ISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVFLF 202

Query: 216 ARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGP 275
             G  G AMA  +S     ++L+ Y+  +    K      G      VS   +  +   P
Sbjct: 203 GLGCNGPAMATSVSFWFYAVILSCYVRFSSSCEK----TRGFVSRDFVSSIKQFFQYGIP 258

Query: 276 CCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNE 335
                CLEWW +EIL+L SG L N K    V+ I L  + L Y +   +A   STRVSN 
Sbjct: 259 SAAMICLEWWLFEILILCSGLLPNPKLETSVLSICLTIETLHYVISAGVAAAVSTRVSNN 318

Query: 336 LGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMA 395
           LGA  P++A  S    L + +V     ++ +   R + G  FS+ K ++  V     L+ 
Sbjct: 319 LGAGNPQVARVSVLAGLCLWIVESAFFSILLFTCRNIIGYAFSNSKEVLDYVADLTPLLC 378

Query: 396 VIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFF 455
           +   L+    V  G+ RG+    +    N   +YL+  PV + LAF   L   GL  G  
Sbjct: 379 LSFILDGFTAVLNGVARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFSRELNGKGLWCGVV 438

Query: 456 IGMVACLALLLTFIARINWDDEAGKAQ 482
           +G      +L    A INW ++A KA+
Sbjct: 439 VGSTVQATILAIVTASINWKEQAEKAR 465
Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description
>sp|Q5I0E9|S47A1_RAT Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
255537135506 multidrug resistance pump, putative [Ric 0.931 0.994 0.696 0.0
224074731462 predicted protein [Populus trichocarpa] 0.829 0.969 0.732 0.0
224124916456 predicted protein [Populus trichocarpa] 0.842 0.997 0.730 0.0
356495629511 PREDICTED: MATE efflux family protein DT 0.907 0.958 0.658 1e-179
356565325468 PREDICTED: MATE efflux family protein DT 0.846 0.976 0.691 1e-177
359474065484 PREDICTED: MATE efflux family protein DT 0.855 0.954 0.695 1e-175
357481861511 Multidrug and toxin extrusion protein [M 0.896 0.947 0.650 1e-174
147842979484 hypothetical protein VITISV_016012 [Viti 0.85 0.948 0.693 1e-174
15235794491 mate efflux domain-containing protein [A 0.885 0.973 0.627 1e-170
356513711525 PREDICTED: MATE efflux family protein DT 0.940 0.967 0.617 1e-167
>gi|255537135|ref|XP_002509634.1| multidrug resistance pump, putative [Ricinus communis] gi|223549533|gb|EEF51021.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/507 (69%), Positives = 415/507 (81%), Gaps = 4/507 (0%)

Query: 1   MPSATSSFEQNPIEKISNNHSPSPRNLT-RRCGMNIMHTTLSELKEQQRLALPLVVMNLT 59
           M +    FE+N + K S   S  P  LT ++   N+    LSE++ Q+ +ALPL+ MNLT
Sbjct: 1   MFTIIPKFEENTVGKTS--QSSPPHTLTAQKWPANLTQIVLSEMRTQRGMALPLLAMNLT 58

Query: 60  WFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRL 119
           WFAK  ITTAFLGRLGEL LAGG L FTFANVTGFSVLNGLCGAM+PICGQAYGAKNFRL
Sbjct: 59  WFAKTAITTAFLGRLGELRLAGGTLGFTFANVTGFSVLNGLCGAMEPICGQAYGAKNFRL 118

Query: 120 LHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLL 179
           LHKTLLM   +LLL T+P++F WLNVDKILIHFGQQEDIS V++ YLFYLLP L V SLL
Sbjct: 119 LHKTLLMTTFVLLLITLPVSFLWLNVDKILIHFGQQEDISLVARTYLFYLLPDLAVISLL 178

Query: 180 SPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDLLVVILLAL 239
            PLK+YLSSQGITLPIMF+S L+LA H+P+NI LVKA+G+EG++M+IWI+DL+VV+ LAL
Sbjct: 179 CPLKAYLSSQGITLPIMFSSGLALALHLPINIFLVKAKGLEGVSMSIWITDLIVVVFLAL 238

Query: 240 YLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLAN 299
           Y+LVTE   K GKWK+GGW +QGV DWLRLLKL  PCCL+TCLEWWC+EILVLL+GRLAN
Sbjct: 239 YVLVTENR-KGGKWKDGGWLDQGVYDWLRLLKLSAPCCLSTCLEWWCWEILVLLTGRLAN 297

Query: 300 AKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSG 359
           AKQAVGVI IVLNFD LL+SVML+LATC S RVSNELGAN+   AYRSAYVSL V+LVSG
Sbjct: 298 AKQAVGVIAIVLNFDYLLFSVMLTLATCASIRVSNELGANQAGPAYRSAYVSLAVSLVSG 357

Query: 360 CVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWL 419
             G L MVG RG+W PLF+HDKGIIRG KK +LLMA+IE +NFPL VCGG+VRGTARPWL
Sbjct: 358 FFGGLAMVGGRGIWAPLFTHDKGIIRGAKKMMLLMALIEVINFPLAVCGGVVRGTARPWL 417

Query: 420 AMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAG 479
           AM++N+GGFYLLALPV V+LAFKA LGL GLL+GF +G+ ACLALL+ FI RI+WD EA 
Sbjct: 418 AMYSNLGGFYLLALPVAVLLAFKARLGLGGLLLGFLVGLSACLALLVVFIMRIDWDVEAD 477

Query: 480 KAQILACDVQEDAKEDENVRSAVVDES 506
           KAQ LA DVQE+ + +    +   D++
Sbjct: 478 KAQKLASDVQENIQRENQRPNRTPDDA 504

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224074731|ref|XP_002304444.1| predicted protein [Populus trichocarpa] gi|222841876|gb|EEE79423.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124916|ref|XP_002329845.1| predicted protein [Populus trichocarpa] gi|222871082|gb|EEF08213.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356495629|ref|XP_003516677.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information
>gi|356565325|ref|XP_003550892.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information
>gi|359474065|ref|XP_002274870.2| PREDICTED: MATE efflux family protein DTX1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357481861|ref|XP_003611216.1| Multidrug and toxin extrusion protein [Medicago truncatula] gi|355512551|gb|AES94174.1| Multidrug and toxin extrusion protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|147842979|emb|CAN82072.1| hypothetical protein VITISV_016012 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15235794|ref|NP_194010.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|2827556|emb|CAA16564.1| predicted protein [Arabidopsis thaliana] gi|7269126|emb|CAB79234.1| predicted protein [Arabidopsis thaliana] gi|27754339|gb|AAO22621.1| putative integral membrane protein [Arabidopsis thaliana] gi|332659258|gb|AEE84658.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356513711|ref|XP_003525554.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
TAIR|locus:2132619491 AT4G22790 "AT4G22790" [Arabido 0.885 0.973 0.487 8.5e-120
TAIR|locus:2119941532 ADS1 "AT4G29140" [Arabidopsis 0.890 0.904 0.311 1.8e-62
TAIR|locus:2016615532 ZF14 "AT1G58340" [Arabidopsis 0.816 0.828 0.308 1.7e-57
TAIR|locus:2127193502 AT4G23030 "AT4G23030" [Arabido 0.835 0.898 0.295 6.1e-55
TAIR|locus:2183169508 AT5G19700 "AT5G19700" [Arabido 0.822 0.874 0.310 1.3e-54
TAIR|locus:2013006510 AT1G71870 "AT1G71870" [Arabido 0.861 0.911 0.276 6.3e-53
TAIR|locus:2064138486 AT2G38510 "AT2G38510" [Arabido 0.853 0.948 0.271 1.5e-51
TAIR|locus:2173098505 AT5G52050 [Arabidopsis thalian 0.870 0.930 0.266 8.3e-51
TAIR|locus:2155179502 AT5G49130 "AT5G49130" [Arabido 0.829 0.892 0.270 6.7e-49
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.807 0.904 0.269 6.6e-42
TAIR|locus:2132619 AT4G22790 "AT4G22790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
 Identities = 234/480 (48%), Positives = 298/480 (62%)

Query:    13 IEKISNNHSPSPRNLTRRCGMNIMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFXX 72
             + + S + S  P      C   +M + + ELK Q R+ LPLVVMNL WF K+T T+ F  
Sbjct:     1 MSETSKSESLDPEVSEGLCSKTLMQSIVHELKLQMRIGLPLVVMNLLWFGKMTTTSVFLG 60

Query:    73 XXXXXXXXXXXXXFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFRXXXXXXXXXXXXXX 132
                          F+FANVTGFSVL G+  AM+PICGQA+GAKNF+              
Sbjct:    61 RQGELNLAGGSLGFSFANVTGFSVLYGISAAMEPICGQAFGAKNFKLLHKTLFMAVLLLL 120

Query:   133 XATVPITFFWLNVDKILIHFGQQEDISAVSKRYXXXXXXXXXXXXXXXXXXXXXXXQGIT 192
               +VPI+F WLNV KIL  FGQ+EDIS ++K+Y                       QG+T
Sbjct:   121 LISVPISFLWLNVHKILTGFGQREDISFIAKKYLLYLLPELPILSFLCPLKAYLSSQGVT 180

Query:   193 LPIMFTSALSLAFHVPVNILLVKARGIEGIAMAIWISDXXXXXXXXXXXXXTECYXXXXX 252
             LPIMFT+A + + H+P+NI+L KARGIEG+AMA+WI+D              E       
Sbjct:   181 LPIMFTTAAATSLHIPINIVLSKARGIEGVAMAVWITDFIVVILLTGYVIVVE-RMKENK 239

Query:   253 XXXXXXXXQGVSDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLN 312
                     Q   DWL L+KL GPCCLT CLEWWCYEILVLL+GRL N  QAV +++IV N
Sbjct:   240 WKQGGWLNQSAQDWLTLIKLSGPCCLTVCLEWWCYEILVLLTGRLPNPVQAVSILIIVFN 299

Query:   313 FDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGV 372
             FD LLY+VMLSL TC +TRVSNELGAN P+ AYR+AY +L V ++SGC+GAL M+  RG 
Sbjct:   300 FDYLLYAVMLSLGTCVATRVSNELGANNPKGAYRAAYTTLIVGIISGCIGALVMIAFRGF 359

Query:   373 WGPLFSH-DKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLL 431
             WG L++H D+ I+ GVKK +L+MAVIE +NFPL VCG IVRGTA+P L M+AN+ GFYLL
Sbjct:   360 WGSLYTHHDQLILNGVKKMMLIMAVIEVVNFPLMVCGEIVRGTAKPSLGMYANLSGFYLL 419

Query:   432 ALPVCVVXXXXXXXXXXXXXXXXXXXMVACLALLLTFIARINWDDEAGKAQILACDVQED 491
             ALP+                      +  CL++LL FIARI+W+ EAGKAQIL C+ +++
Sbjct:   420 ALPLGATLAFKAKQGLQGFLIGLFVGISLCLSILLIFIARIDWEKEAGKAQILTCNTEDE 479
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2119941 ADS1 "AT4G29140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016615 ZF14 "AT1G58340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127193 AT4G23030 "AT4G23030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183169 AT5G19700 "AT5G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013006 AT1G71870 "AT1G71870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064138 AT2G38510 "AT2G38510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173098 AT5G52050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155179 AT5G49130 "AT5G49130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5I0E9S47A1_RATNo assigned EC number0.31010.85370.8144yesno
Q8K0H1S47A1_MOUSENo assigned EC number0.31570.85550.8148yesno
A7KAU2S47A1_RABITNo assigned EC number0.30220.85920.8169yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-139
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 8e-54
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-49
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 6e-42
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-30
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 1e-30
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 1e-29
pfam01554161 pfam01554, MatE, MatE 3e-27
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 7e-26
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 1e-25
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 2e-22
pfam01554161 pfam01554, MatE, MatE 7e-20
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 1e-16
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-14
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-13
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 5e-13
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 1e-12
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-11
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-09
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 6e-08
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 2e-07
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 3e-06
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 4e-06
COG2244480 COG2244, RfbX, Membrane protein involved in the ex 1e-05
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 3e-05
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 4e-05
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 6e-05
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 1e-04
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-04
cd13123420 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of 1e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 7e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 0.001
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 0.002
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  410 bits (1056), Expect = e-139
 Identities = 179/441 (40%), Positives = 262/441 (59%), Gaps = 7/441 (1%)

Query: 42  ELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLC 101
           E K+  RLA PLV+ +L  ++   ++  F+G LG+L LA  +LA +FANVTGFS+L GL 
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 102 GAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAV 161
            A+D +CGQA+GAKN++L+   L  A+++LLL  VPI+  WLN + IL+  GQ  +I+ +
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 162 SKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILLVKA--RGI 219
           +  YL +L+P L   +L  PLK YL +QGI LP+++ S ++L  ++ +N LLV     G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 220 EGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLLKLCGPCCLT 279
            G A+A  IS  L+V+LL LY+  ++ +    K   GG+  +    W   LKL  P  L 
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGH----KATWGGFSREAFRGWGPFLKLAIPSALM 236

Query: 280 TCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGAN 339
            CLEWW +EILVLL+G L     A+    I L    LLY + L ++   S RV NELGA 
Sbjct: 237 LCLEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAG 295

Query: 340 RPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEA 399
            P+ A  +A V+L ++LV G V A+ ++  R VW  LF+ D+ +I  V   L ++A+ + 
Sbjct: 296 NPKRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQI 355

Query: 400 LNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGLAGLLIGFFIGMV 459
            +    V  G++RG  R  L  + N+  +YL+ LPV ++LAF   LGL GL IG   G++
Sbjct: 356 FDGLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLI 415

Query: 460 ACLALLLTFIARINWDDEAGK 480
               +LL  I R +WD EA K
Sbjct: 416 LQAVILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 540
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.98
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
PRK10459492 colanic acid exporter; Provisional 99.96
COG2244480 RfbX Membrane protein involved in the export of O- 99.94
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.87
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.87
PRK10189 478 MATE family multidrug exporter; Provisional 99.87
PRK00187 464 multidrug efflux protein NorA; Provisional 99.87
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.86
PRK01766 456 multidrug efflux protein; Reviewed 99.85
TIGR01695502 mviN integral membrane protein MviN. This model re 99.81
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.76
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.75
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.74
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.73
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.71
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.71
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.69
PRK15099416 O-antigen translocase; Provisional 99.68
PRK10459492 colanic acid exporter; Provisional 99.66
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.58
COG2244480 RfbX Membrane protein involved in the export of O- 99.57
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.24
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.2
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.09
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.03
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.54
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.26
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.99
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.95
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.87
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.79
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.71
COG4267467 Predicted membrane protein [Function unknown] 97.32
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-55  Score=441.60  Aligned_cols=434  Identities=24%  Similarity=0.305  Sum_probs=410.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCChh
Q 009192           39 TLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKNFR  118 (540)
Q Consensus        39 ~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~~~  118 (540)
                      .++..|+++++++|++++++...+++++|+.++||+|++++|+.+++.++..++ ..+..|++.|..++++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            566899999999999999999999999999999999999999999999999997 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHHH
Q 009192          119 LLHKTLLMAILLLLLATVPIT-FFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMF  197 (540)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  197 (540)
                      ++++..++++.+..+++++.. +.+.+.++++.+++.++|+.+.+.+|+++..++.|+..++.++.+++|+.|+++.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            999999999999999997777 5589999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh---h-cCcchHHHHHHHHHHHHHHHHHHHHHhhccc-cCCCcccCCCCChhhHhhHHHhHHh
Q 009192          198 TSALSLAFHVPVNILLVK---A-RGIEGIAMAIWISDLLVVILLALYLLVTECY-GKEGKWKEGGWWEQGVSDWLRLLKL  272 (540)
Q Consensus       198 ~~~~~~~~~i~~~~~li~---~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  272 (540)
                      .++++.++|+++|++|+.   + +|+.|+++||++++.+..++..+++.++++. ..  ...  +..+++++.+|++++.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~i~~l  246 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSL--FKK--KLLKPDRKLLKEILRL  246 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhh--hhh--hccCCCHHHHHHHHHh
Confidence            999999999999999993   3 9999999999999999999999999776642 11  212  2334568999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 009192          273 CGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYVSL  352 (540)
Q Consensus       273 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~~~  352 (540)
                      |+|..+++......+...+.+++++|  ++++|+|+++.++.++.++++.|++++.++++++++|+||++++++..+.+.
T Consensus       247 G~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~  324 (455)
T COG0534         247 GLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLAL  324 (455)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999  6899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHHhh
Q 009192          353 GVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLA  432 (540)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  432 (540)
                      .+++.+++..+++++++++++.++|++|+|+.+.+..++++.++..++++++.+..+++||.||++.+++.++++.|.+.
T Consensus       325 ~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~  404 (455)
T COG0534         325 KLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFR  404 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Q 009192          433 LPVCVVLAFKAALGLAGLLIGFFIGMVACLALLLTFIARINWDDEAGK  480 (540)
Q Consensus       433 l~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (540)
                      +|+.+++.+.. +|..|+|+++..++.+..++..+++++.+|+++..+
T Consensus       405 lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (455)
T COG0534         405 LPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVA  451 (455)
T ss_pred             HhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            99999999876 799999999999999999999999999999877543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-06
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 2/171 (1%)
Query: 264 SDWLRLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLS 323
            + +RL +L  P       E   + ++ LL   L +    V    + LNF  L++   +S
Sbjct: 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMS 292
Query: 324 LATCTSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGI 383
           +    S RV ++LG    + A  +A V L   L + C+ AL  V  R     L++ ++ +
Sbjct: 293 IGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVV 352
Query: 384 IRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALP 434
           +    + LL  A+ + ++    V  G +RG        H     +++L LP
Sbjct: 353 VALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLP 403

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 9e-80
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  256 bits (656), Expect = 9e-80
 Identities = 94/449 (20%), Positives = 185/449 (41%), Gaps = 13/449 (2%)

Query: 34  NIMHTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTG 93
           N +H    E     +LA P+++ ++       + T   G +  + +A  ++A +   +  
Sbjct: 2   NSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPS 60

Query: 94  FSVLNGLCGAMDPICGQAYGAKNFRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFG 153
                GL  A+ P+  Q  GA     +   +   ++L LL +VPI         I+    
Sbjct: 61  ILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMD 120

Query: 154 QQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIMFTSALSLAFHVPVNILL 213
            +E ++  +  Y+  ++ ++    L   L+S+     +T P M    + L  ++P+N + 
Sbjct: 121 VEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIF 180

Query: 214 VK------ARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWL 267
           V         G  G  +A  I   ++++LL  Y++ ++       +    + +    + +
Sbjct: 181 VYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVF--ETFHKPQPKELI 238

Query: 268 RLLKLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATC 327
           RL +L  P       E   + ++ LL   L +   A     + LNF  L++   +S+   
Sbjct: 239 RLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAH--QVALNFSSLVFMFPMSIGAA 296

Query: 328 TSTRVSNELGANRPRLAYRSAYVSLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGV 387
            S RV ++LG    + A  +A V L   L + C+ AL  V  R     L++ ++ ++   
Sbjct: 297 VSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALA 356

Query: 388 KKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYLLALPVCVVLAFKAALGL 447
            + LL  A+ + ++    V  G +RG        H     +++L LP   +L     L  
Sbjct: 357 MQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTE 416

Query: 448 AGL-LIGFFIGMVACLALL-LTFIARINW 474
             L   GF++G +  L+   L    R+ W
Sbjct: 417 QPLGAKGFWLGFIIGLSAAALMLGQRLYW 445
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query540
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.82
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.3e-47  Score=391.97  Aligned_cols=431  Identities=22%  Similarity=0.337  Sum_probs=396.1

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCC
Q 009192           37 HTTLSELKEQQRLALPLVVMNLTWFAKLTITTAFLGRLGELHLAGGALAFTFANVTGFSVLNGLCGAMDPICGQAYGAKN  116 (540)
Q Consensus        37 ~~~~~~~~~l~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~s~~~g~~~  116 (540)
                      ...++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.+++++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34567899999999999999999999999999999999999999999999998875 77889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCChhHHH
Q 009192          117 FRLLHKTLLMAILLLLLATVPITFFWLNVDKILIHFGQQEDISAVSKRYLFYLLPSLLVTSLLSPLKSYLSSQGITLPIM  196 (540)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  196 (540)
                      +++.++.++.++.+..+++++.++++.+.++++.+++.+++..+.+..|+++..++.++..+.....+++|+.|+++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999998877667788999998999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh------hcCcchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCCCChhhHhhHHHhH
Q 009192          197 FTSALSLAFHVPVNILLVK------ARGIEGIAMAIWISDLLVVILLALYLLVTECYGKEGKWKEGGWWEQGVSDWLRLL  270 (540)
Q Consensus       197 ~~~~~~~~~~i~~~~~li~------~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (540)
                      ..+++..++|++++++++.      ++|+.|+++|+++++++..++..++.+++++.+....++  ++.+++++.+|+++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l  241 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE--TFHKPQPKELIRLF  241 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC--CCCSSTTSSTTTSH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh--cccccCHHHHHHHH
Confidence            9999999999999999993      699999999999999999998888876554332211122  33344578999999


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 009192          271 KLCGPCCLTTCLEWWCYEILVLLSGRLANAKQAVGVIVIVLNFDCLLYSVMLSLATCTSTRVSNELGANRPRLAYRSAYV  350 (540)
Q Consensus       271 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~i~~l~~~~~~~i~~a~~~~vs~~~g~~~~~~~~~~~~~  350 (540)
                      ++++|.+++++...+.+..++.+++.+|  ++++|+|+++.++.++..++..+++++..|.+++++|++|.+++++..++
T Consensus       242 ~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~  319 (460)
T 3mkt_A          242 RLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANV  319 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            9999999999999999999999999996  67999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccccccccccCcHhHHHHHHHHHHHHHHHHHhhhHHHHHhHHhhccCcchhhHHHHHHHHHH
Q 009192          351 SLGVALVSGCVGALTMVGARGVWGPLFSHDKGIIRGVKKALLLMAVIEALNFPLTVCGGIVRGTARPWLAMHANVGGFYL  430 (540)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  430 (540)
                      +..+++.+++++++++.++++++..+|++|++..+.+..++++++++.++.+++.+..+++++.||++.+++.++++.|+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  399 (460)
T 3mkt_A          320 GLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWV  399 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988899999999999999999999999999999999999999999999889


Q ss_pred             hhhhHHHHHHHH----hC-CCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 009192          431 LALPVCVVLAFK----AA-LGLAGLLIGFFIGMVACLALLLTFIARI  472 (540)
Q Consensus       431 ~~l~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~  472 (540)
                      +++|+.+++...    ++ +|+.|+|+++.+++.+..++..+.++|.
T Consensus       400 ~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          400 LGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999877    56 8999999999999999988876666554
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00