Citrus Sinensis ID: 009193

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
MVISVREISSSWPLCFNPSTSKIKTSPRLRNSICRASFSVQRQPTNAISTSTSKFNSCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSARGVAAAMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
cEEEEEccccccccccccccccccccccccccHHHccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHHHHHHccccHHHHHHHHHccccHHcHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHcEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEHHHHcHHHHHHHHHHHHccccccccccccccc
cEEEEEccccccccEEccccccccccccccccHHHHcccEccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHccccccccccccccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccEEHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHHcccEEEccccccccEEEcccccccHHHHHHHHHcHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
MVISVREissswplcfnpstskiktsprlrnsicrasfsvqrqptnaiststskfnscegsvfdplginpdvcsHLNSTWESFLSLlsptfestsgtkreksssarGVAAamedssidfgdffkgplpgkFLKLLGYLALSRlgiyiplggvnreafvgnldqnsllstldsfsgggigrlgicslgivpfINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLylrpyvndfstdwVLTSVTLLTLGSAFTTYIGErisdlklgngtsLLIFTSIISylpasfgrtvaeafqdgnyiGLATIIISFILLVLGIVYVqeaerkipinyasrytsrsgglqrsaylpfkvnssgvmpiifstsslalpgtlaRFTGIAALKKAAVAlnpggsfylptnILLIAFFNYYYTflqldpddvsEQLKrqgasiplvrpgksTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQkykniefydidsygs
mvisvreissswplcfnpstskiktsprlRNSICRAsfsvqrqptnaiststskfnSCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTfestsgtkreksssarGVAAAMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASrytsrsgglqRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQgasiplvrpgkSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEiisqkykniefydidsygs
MVISVREISSSWPLCFNPSTSKIKTSPRLRNSICRASFSVQRQPTNAISTSTSKFNSCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSARGVAAAMEDSSIDFGDffkgplpgkflkllgYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFstdwvltsvtlltlGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
***********WPLCF****************************************SCEGSVFDPLGINPDVCSHLNSTWESFLSLL*****************************IDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDL*******GRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPD************IPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDID****
********SS*********************************************NSCEGSVFDPLGINPDVCSHLNSTWESFLS*******************************IDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQK****AGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYT*****LQ**AYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDI*****
MVISVREISSSWPLCFNPSTSKIKTSPRLRNSICRASFSVQRQPTNAISTSTSKFNSCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPT*********************MEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
MVISVREISSSWPLCFNPSTSKIKTSPRLRNSICRASFSV*****************C*GSVFDPLGINPDVCSHLNSTWESFLSLLSPTF****************VA*AMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDI*****
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MVISVREISSSWPLCFNPSTSKIKTSPRLRNSICRASFSVQRQPTNAISTSTSKFNSCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSARGVAAAMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDSYGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query540 2.2.26 [Sep-21-2011]
Q38885551 Preprotein translocase su yes no 0.892 0.874 0.879 0.0
Q6ZG25556 Preprotein translocase su yes no 0.885 0.859 0.854 0.0
Q9XQU4527 Preprotein translocase su N/A no 0.974 0.998 0.769 0.0
P93690545 Preprotein translocase su N/A no 0.931 0.922 0.807 0.0
O63066553 Preprotein translocase su N/A no 0.887 0.866 0.842 0.0
P77964442 Protein translocase subun N/A no 0.720 0.880 0.422 3e-86
P0A4H1439 Protein translocase subun yes no 0.746 0.917 0.422 5e-86
P0A4H0439 Protein translocase subun yes no 0.746 0.917 0.422 5e-86
P51297411 Protein translocase subun N/A no 0.707 0.929 0.414 1e-85
Q1XDJ1411 Protein translocase subun N/A no 0.751 0.987 0.405 2e-85
>sp|Q38885|SCY1_ARATH Preprotein translocase subunit SCY1, chloroplastic OS=Arabidopsis thaliana GN=SCY1 PE=1 SV=2 Back     alignment and function desciption
 Score =  868 bits (2243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/482 (87%), Positives = 455/482 (94%)

Query: 57  SCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSARGVAAAMEDSS 116
           S E SVFDPLGINPD  S L+S WESF+SLLSP+FES+SG +R+K SS RGVAAA+EDSS
Sbjct: 68  SSEASVFDPLGINPDETSGLSSIWESFVSLLSPSFESSSGNRRDKPSSGRGVAAAIEDSS 127

Query: 117 IDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGG 176
           IDFGDFFKGPLPGKFLKLLG+LALSRLGIYIPLGGVNREAFVGNLDQNS+LSTLD+FSGG
Sbjct: 128 IDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNREAFVGNLDQNSILSTLDTFSGG 187

Query: 177 GIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAI 236
           GIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQK+EGEAGRKK+LQYTRYASVGFAI
Sbjct: 188 GIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKILQYTRYASVGFAI 247

Query: 237 VQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSI 296
           VQAIGQV YLRPYVNDFST+WV++SVTLLTLGS  TTYIGERISDLKLGNGTSLLIFTSI
Sbjct: 248 VQAIGQVFYLRPYVNDFSTEWVVSSVTLLTLGSVLTTYIGERISDLKLGNGTSLLIFTSI 307

Query: 297 ISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRS 356
           ISYLPASFGRT AEA Q+GNY GL TI++SF+LLVLGIVYVQEAERKIP+NYASRYTS++
Sbjct: 308 ISYLPASFGRTTAEALQEGNYTGLGTIVVSFLLLVLGIVYVQEAERKIPLNYASRYTSKA 367

Query: 357 GGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPT 416
           GGLQ+SAYLPFKVNS+GVMPIIFSTSSLALP TLARFTGI+ALK  A AL PGGSFYLPT
Sbjct: 368 GGLQKSAYLPFKVNSAGVMPIIFSTSSLALPATLARFTGISALKNVAFALTPGGSFYLPT 427

Query: 417 NILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVF 476
           NILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTA F+KTVL RISVLGS F
Sbjct: 428 NILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTALFIKTVLGRISVLGSAF 487

Query: 477 LAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDID 536
           LA+LAAGPAV+EQ THLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFY++D
Sbjct: 488 LAVLAAGPAVVEQITHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYELD 547

Query: 537 SY 538
            Y
Sbjct: 548 KY 549
Involved in protein export. Probably interacts with other proteins to allow the translocation of proteins across the chloroplast thylakoid membranes. Required for normal greening during embryogenesis. Central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6ZG25|SECY_ORYSJ Preprotein translocase subunit SECY, chloroplastic OS=Oryza sativa subsp. japonica GN=SECY PE=2 SV=1 Back     alignment and function description
>sp|Q9XQU4|SECY_PEA Preprotein translocase subunit SECY, chloroplastic OS=Pisum sativum GN=SECY PE=2 SV=1 Back     alignment and function description
>sp|P93690|SECY_SPIOL Preprotein translocase subunit SECY, chloroplastic OS=Spinacia oleracea GN=SECY PE=2 SV=1 Back     alignment and function description
>sp|O63066|SECY_MAIZE Preprotein translocase subunit SECY, chloroplastic OS=Zea mays GN=SECY PE=2 SV=1 Back     alignment and function description
>sp|P77964|SECY_SYNY3 Protein translocase subunit SecY OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P0A4H1|SECY_SYNP6 Protein translocase subunit SecY OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P0A4H0|SECY_SYNE7 Protein translocase subunit SecY OS=Synechococcus elongatus (strain PCC 7942) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P51297|SECY_PORPU Protein translocase subunit SecY OS=Porphyra purpurea GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q1XDJ1|SECY_PORYE Protein translocase subunit SecY OS=Porphyra yezoensis GN=secY PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
255584934557 protein translocase secy subunit, putati 0.992 0.962 0.844 0.0
449524114546 PREDICTED: preprotein translocase subuni 0.996 0.985 0.836 0.0
356517020540 PREDICTED: preprotein translocase subuni 0.985 0.985 0.807 0.0
224142301478 SecY protein [Populus trichocarpa] gi|22 0.879 0.993 0.910 0.0
449464360571 PREDICTED: preprotein translocase subuni 0.987 0.933 0.823 0.0
15224214551 Preprotein translocase subunit secY [Ara 0.892 0.874 0.879 0.0
297836616549 hypothetical protein ARALYDRAFT_480774 [ 0.937 0.921 0.841 0.0
359484929546 PREDICTED: preprotein translocase subuni 0.996 0.985 0.835 0.0
1049293551 SecY homolog; targetted to the thylakoid 0.892 0.874 0.879 0.0
297736055577 unnamed protein product [Vitis vinifera] 0.996 0.932 0.790 0.0
>gi|255584934|ref|XP_002533181.1| protein translocase secy subunit, putative [Ricinus communis] gi|223527015|gb|EEF29204.1| protein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/554 (84%), Positives = 503/554 (90%), Gaps = 18/554 (3%)

Query: 1   MVISVREISSSWP---LCFN-------PSTSKIKTSP---RLRNSICRASFSVQRQPTNA 47
           M+I+VRE +++ P   +C N       P   KI + P   RL+   CRASFS+Q +PT++
Sbjct: 1   MLITVREAAAASPFSPICLNLSSLSANPIKYKIPSRPSSYRLKTCACRASFSLQNRPTSS 60

Query: 48  ISTSTS----KFNSCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSS 103
            +T+T+      NSCEGSVFDPLGIN D  S +N+ WES L+LLSP FES S TKR+K S
Sbjct: 61  TTTTTTTKPWNTNSCEGSVFDPLGINTDEYSGVNAAWESILALLSPIFESASSTKRDKPS 120

Query: 104 SARGVAAAMEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQ 163
            ARGVAAA+EDSSIDFGDFFKGPLPGKFLKLLG+LALSRLGIYIPLGGVNR+AFVGNLDQ
Sbjct: 121 -ARGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNRDAFVGNLDQ 179

Query: 164 NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKV 223
           NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQKREGEAGRKK+
Sbjct: 180 NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKI 239

Query: 224 LQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLK 283
           LQYTRYASVGFAIVQAIGQVLYLRPYVNDFST WVL+SVTLLTLGS FTTY+GER SDLK
Sbjct: 240 LQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTQWVLSSVTLLTLGSVFTTYLGERTSDLK 299

Query: 284 LGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERK 343
           LGNGTSLLIFTSIISYLPASFGRTVA+AFQDGNY+GLATIIISF LLVLGIVYVQEAERK
Sbjct: 300 LGNGTSLLIFTSIISYLPASFGRTVAQAFQDGNYVGLATIIISFFLLVLGIVYVQEAERK 359

Query: 344 IPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAA 403
           IP+NYASRYTSR+GGLQ+SAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI+ALKKAA
Sbjct: 360 IPLNYASRYTSRTGGLQKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGISALKKAA 419

Query: 404 VALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLK 463
           VALNPGG+FYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIP VRPGKSTAAFLK
Sbjct: 420 VALNPGGAFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPQVRPGKSTAAFLK 479

Query: 464 TVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEII 523
           TVLSRISVLGS FLAILAAGPAV+EQ THLTAFRGFAGTSVLILVGCATDTARKVQAEII
Sbjct: 480 TVLSRISVLGSGFLAILAAGPAVVEQITHLTAFRGFAGTSVLILVGCATDTARKVQAEII 539

Query: 524 SQKYKNIEFYDIDS 537
           SQKYKNIEFYDID+
Sbjct: 540 SQKYKNIEFYDIDN 553

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449524114|ref|XP_004169068.1| PREDICTED: preprotein translocase subunit SCY1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356517020|ref|XP_003527188.1| PREDICTED: preprotein translocase subunit secY, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224142301|ref|XP_002324497.1| SecY protein [Populus trichocarpa] gi|222865931|gb|EEF03062.1| SecY protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449464360|ref|XP_004149897.1| PREDICTED: preprotein translocase subunit SCY1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15224214|ref|NP_179461.1| Preprotein translocase subunit secY [Arabidopsis thaliana] gi|12643748|sp|Q38885.2|SCY1_ARATH RecName: Full=Preprotein translocase subunit SCY1, chloroplastic; AltName: Full=CpSecY; Flags: Precursor gi|15983352|gb|AAL11544.1|AF424550_1 At2g18710/MSF3.9 [Arabidopsis thaliana] gi|4185137|gb|AAD08940.1| putative preprotein translocase SECY protein [Arabidopsis thaliana] gi|16604410|gb|AAL24211.1| At2g18710/MSF3.9 [Arabidopsis thaliana] gi|17473607|gb|AAL38269.1| putative preprotein translocase SECY protein [Arabidopsis thaliana] gi|27363258|gb|AAO11548.1| At2g18710/MSF3.9 [Arabidopsis thaliana] gi|330251702|gb|AEC06796.1| Preprotein translocase subunit secY [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297836616|ref|XP_002886190.1| hypothetical protein ARALYDRAFT_480774 [Arabidopsis lyrata subsp. lyrata] gi|297332030|gb|EFH62449.1| hypothetical protein ARALYDRAFT_480774 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359484929|ref|XP_002262945.2| PREDICTED: preprotein translocase subunit secY, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|1049293|gb|AAB60305.1| SecY homolog; targetted to the thylakoid membrane; the protein has a chloroplast targetting signal, but the processing site is not known [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297736055|emb|CBI24093.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
TAIR|locus:2054038551 SCY1 "AT2G18710" [Arabidopsis 0.994 0.974 0.757 1.2e-209
TIGR_CMR|CBU_0258442 CBU_0258 "preprotein transloca 0.712 0.871 0.345 6.2e-62
TIGR_CMR|GSU_2837435 GSU_2837 "preprotein transloca 0.712 0.885 0.348 1.3e-61
TIGR_CMR|SPO_0506455 SPO_0506 "preprotein transloca 0.714 0.848 0.361 5e-60
TIGR_CMR|BA_0130433 BA_0130 "preprotein translocas 0.720 0.898 0.330 2.2e-59
UNIPROTKB|P78283444 secY "Protein translocase subu 0.737 0.896 0.322 2.7e-59
TIGR_CMR|VC_2576444 VC_2576 "preprotein translocas 0.737 0.896 0.322 2.7e-59
TIGR_CMR|CHY_2289419 CHY_2289 "preprotein transloca 0.712 0.918 0.337 4e-58
NCBI_NP|NP_354903.2446 prlA "preprotein translocase s 0.714 0.865 0.351 1.7e-57
TIGR_CMR|CPS_0621445 CPS_0621 "preprotein transloca 0.737 0.894 0.318 2.8e-57
TAIR|locus:2054038 SCY1 "AT2G18710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2027 (718.6 bits), Expect = 1.2e-209, P = 1.2e-209
 Identities = 416/549 (75%), Positives = 455/549 (82%)

Query:     2 VISVREISSSWPLCFN-PSTSKI--KTSPRLRNS-ICRASFSVQRQPTNAISTSTSKFN- 56
             +I+V E+SS      N  S S++  K+S RLR+S + + SF      T   +     +N 
Sbjct:     1 MITVSEVSSYSSSSSNFASLSRLNHKSSSRLRSSSLYKGSFFSVSTKTRRNTCKAKSWNL 60

Query:    57 -------SCEGSVFDPLGINPDVCSHLNSTWESFLSLLSPTFESTSGTKREKSSSARGVA 109
                    S E SVFDPLGINPD  S L+S WESF+SLLSP+FES+SG +R+K SS RGVA
Sbjct:    61 GLVINSRSSEASVFDPLGINPDETSGLSSIWESFVSLLSPSFESSSGNRRDKPSSGRGVA 120

Query:   110 AAMEDSSIDFGDXXXXXXXXXXXXXXXYLALSRLGIYIPLGGVNREAFVGNLDQNSLLST 169
             AA+EDSSIDFGD               +LALSRLGIYIPLGGVNREAFVGNLDQNS+LST
Sbjct:   121 AAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGIYIPLGGVNREAFVGNLDQNSILST 180

Query:   170 LDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRY 229
             LD+FSGGGIGRLGICSLGIVPFINAQIVFQLLAQ+ PKLQDLQK+EGEAGRKK+LQYTRY
Sbjct:   181 LDTFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKKEGEAGRKKILQYTRY 240

Query:   230 ASVGFAIVQAIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTS 289
             ASVGFAIVQAIGQV YLRPYVNDF              GS  TTYIGERISDLKLGNGTS
Sbjct:   241 ASVGFAIVQAIGQVFYLRPYVNDFSTEWVVSSVTLLTLGSVLTTYIGERISDLKLGNGTS 300

Query:   290 LLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYA 349
             LLIFTSIISYLPASFGRT AEA Q+GNY GL TI++SF+LLVLGIVYVQEAERKIP+NYA
Sbjct:   301 LLIFTSIISYLPASFGRTTAEALQEGNYTGLGTIVVSFLLLVLGIVYVQEAERKIPLNYA 360

Query:   350 SRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPG 409
             SRYTS++GGLQ+SAYLPFKVNS+GVMPIIFSTSSLALP TLARFTGI+ALK  A AL PG
Sbjct:   361 SRYTSKAGGLQKSAYLPFKVNSAGVMPIIFSTSSLALPATLARFTGISALKNVAFALTPG 420

Query:   410 GSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRI 469
             GSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTA F+KTVL RI
Sbjct:   421 GSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTALFIKTVLGRI 480

Query:   470 SVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKN 529
             SVLGS FLA+LAAGPAV+EQ THLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKN
Sbjct:   481 SVLGSAFLAVLAAGPAVVEQITHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKN 540

Query:   530 IEFYDIDSY 538
             IEFY++D Y
Sbjct:   541 IEFYELDKY 549
GO:0009306 "protein secretion" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0010027 "thylakoid membrane organization" evidence=ISS
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
TIGR_CMR|CBU_0258 CBU_0258 "preprotein translocase, SecY subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2837 GSU_2837 "preprotein translocase, SecY subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0506 SPO_0506 "preprotein translocase, SecY subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0130 BA_0130 "preprotein translocase, SecY subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P78283 secY "Protein translocase subunit SecY" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2576 VC_2576 "preprotein translocase, SecY subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2289 CHY_2289 "preprotein translocase, SecY subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
NCBI_NP|NP_354903.2 prlA "preprotein translocase subunit SecY" [Agrobacterium fabrum str. C58 (taxid:176299)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0621 CPS_0621 "preprotein translocase, SecY subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38885SCY1_ARATHNo assigned EC number0.87960.89250.8747yesno
O63066SECY_MAIZENo assigned EC number0.84260.88700.8661N/Ano
P93690SECY_SPIOLNo assigned EC number0.80700.93140.9229N/Ano
Q9XQU4SECY_PEANo assigned EC number0.76990.97400.9981N/Ano
Q6ZG25SECY_ORYSJNo assigned EC number0.85440.88510.8597yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
PRK09204426 PRK09204, secY, preprotein translocase subunit Sec 1e-138
CHL00161417 CHL00161, secY, preprotein translocase subunit Sec 1e-117
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 1e-104
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 1e-103
pfam00344340 pfam00344, SecY, SecY translocase 2e-96
PRK12907434 PRK12907, secY, preprotein translocase subunit Sec 7e-69
TIGR02920395 TIGR02920, acc_sec_Y2, accessory Sec system transl 1e-29
PRK12417404 PRK12417, secY, preprotein translocase subunit Sec 8e-27
PRK08568462 PRK08568, PRK08568, preprotein translocase subunit 1e-08
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information 
 Score =  407 bits (1049), Expect = e-138
 Identities = 160/422 (37%), Positives = 261/422 (61%), Gaps = 15/422 (3%)

Query: 119 FGDFFKGP-LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNS--LLSTLDSFSG 175
             + FK   L  + L  LG L + R+G YIP+ G++  A     DQ S  +L   + FSG
Sbjct: 5   LKNAFKIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSG 64

Query: 176 GGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFA 235
           G + R  I +LGI+P+I A I+ QLL  + PKL++L+K EGEAGR+K+ QYTRY +V  A
Sbjct: 65  GALSRFSIFALGIMPYITASIIMQLLTVVIPKLEELKK-EGEAGRRKINQYTRYLTVVLA 123

Query: 236 IVQAIGQVLYLRPY-------VNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGT 288
            VQ+IG    L                 + LT V  LT G+ F  ++GE+I++  +GNG 
Sbjct: 124 FVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITERGIGNGI 183

Query: 289 SLLIFTSIISYLPASFGRTVAEAFQDG-NYIGLATIIISFILLVLGIVYVQEAERKIPIN 347
           SL+IF  I++ LP++ G+T   A     + +    +I+ F+ ++  +V+V++A+R+IP+ 
Sbjct: 184 SLIIFAGIVAGLPSAIGQTFELARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQ 243

Query: 348 YASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAA-LKKAAVAL 406
           YA R   R     +S+YLP KVN +GV+P+IF++S L  P T+A+F G  + L+  A  L
Sbjct: 244 YAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGSGSWLQWIANYL 303

Query: 407 NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 466
           +PG   Y+    LLI FF ++YT +Q +P++++E LK+ G  IP +RPG+ TA +L  VL
Sbjct: 304 SPGSPLYILLYALLIIFFTFFYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVL 363

Query: 467 SRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 526
           +R++++G+++LA +A  P +++    +     F GTS+LI+VG A DT ++++++++S++
Sbjct: 364 TRLTLVGAIYLAFIALLPEILQNALGV--PFYFGGTSLLIVVGVALDTMKQIESQLMSRQ 421

Query: 527 YK 528
           Y+
Sbjct: 422 YE 423

Length = 426
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2 Back     alignment and domain information
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 540
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
KOG1373476 consensus Transport protein Sec61, alpha subunit [ 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 94.45
>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=8.9e-100  Score=811.79  Aligned_cols=413  Identities=33%  Similarity=0.593  Sum_probs=353.1

Q ss_pred             hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHH
Q 009193          119 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIV  197 (540)
Q Consensus       119 ~~~~~k-~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII  197 (540)
                      +.++++ +++|+|++||++++++||+|++||+||+|.+++.. .++++++++++.|+||+++++|+|+|||+|||||||+
T Consensus         5 ~~~~~~~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~-~~~~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII   83 (434)
T PRK12907          5 ISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKV-QDQANVLGMLNVFGGGALQHFSIFAVGITPYITASII   83 (434)
T ss_pred             HHhhhccHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhh-hhhhhHHHHHHHHhccccccChHHHHccHHHHHHHHH
Confidence            344554 79999999999999999999999999999987652 2234589999999999999999999999999999999


Q ss_pred             HHHHhh-hchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccccchhHHHHHHHHHHHHHHH
Q 009193          198 FQLLAQ-INPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPY-----VNDFSTDWVLTSVTLLTLGSAF  271 (540)
Q Consensus       198 ~QLL~~-~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~-----~~~~~~~~~~~ivl~LvaGs~~  271 (540)
                      ||||+. .+|++++++| |||+||||+|+||||+|+++|++||+++++.+...     ..+.+...+++++++|++|+++
T Consensus        84 ~QLL~~~~~p~l~~l~k-ege~gr~k~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~  162 (434)
T PRK12907         84 VQLLQMDVIPKFSEWAK-QGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAF  162 (434)
T ss_pred             HHHHHhccCccHHHHhh-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHHH
Confidence            999954 7999999997 89999999999999999999999999988765421     1112223356667899999999


Q ss_pred             HHHHhHhhhcccCcCcchHHHHHHHhhhhhHHHHHHHHHHh-hcCc-----hhHHHHHHHHHHHHHHHhheeeccEEeee
Q 009193          272 TTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAF-QDGN-----YIGLATIIISFILLVLGIVYVQEAERKIP  345 (540)
Q Consensus       272 l~WL~E~It~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~-~~~~-----~~~~l~~l~~~liiv~~iV~l~~aerrIP  345 (540)
                      ++||||+|||||+|||+|++|++||++++|+.+.+.+.... ..+.     ....++++++++++++++||+|++|||||
T Consensus       163 l~WL~e~It~~GIGnGiSliI~~gIv~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~v~~~~rrIP  242 (434)
T PRK12907        163 LLWLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRKIP  242 (434)
T ss_pred             HHHHHHHHhcCCcCcccHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhHHHHHHHHHHHHHHHHHHhheeeeeEEEE
Confidence            99999999999999999999999999999988876443111 1121     11122333445566788999999999999


Q ss_pred             eeeccccccccCCCC-CCcccceeecccCChhHHHHHHhHhhHHHHHHhhChh-HHHHHHHhcCCCCcchHHHHHHHHHH
Q 009193          346 INYASRYTSRSGGLQ-RSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIA-ALKKAAVALNPGGSFYLPTNILLIAF  423 (540)
Q Consensus       346 I~y~~r~~g~~~~~~-~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~~-~l~~~~~~~~~~g~~y~~iy~~lii~  423 (540)
                      +||++|..|++.+.+ +++|+|+|+|++||||+|||++++++|++++++++++ +..+...++++++++|..+|++++++
T Consensus       243 i~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~  322 (434)
T PRK12907        243 IQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGMTLYVGLIVA  322 (434)
T ss_pred             EEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence            999999888765554 6789999999999999999999999999999987432 23334455677778899999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccch
Q 009193          424 FNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTS  503 (540)
Q Consensus       424 Fs~fys~i~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTs  503 (540)
                      |+|||+++++||||+||||||+|+||||+||||+|++||+|+++|+|++||+|++++|++|++++.+.+++....+||||
T Consensus       323 Fs~fyt~i~~nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~~~~~~~~~~~~~gGTs  402 (434)
T PRK12907        323 FTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQIGGTS  402 (434)
T ss_pred             HHHHHHHHccCHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCcccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999998777765333489999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCc-ccc
Q 009193          504 VLILVGCATDTARKVQAEIISQKYKNI-EFY  533 (540)
Q Consensus       504 lLI~Vgv~ldt~~qI~a~l~~~~Y~~~-~~~  533 (540)
                      +||+|||++||+||+|+++.++||+++ +.+
T Consensus       403 lLI~VgV~ldt~~qi~s~l~~~~Y~~~~~~~  433 (434)
T PRK12907        403 LLIIVGVALETMKTLESQLVKRHYKGFIKKA  433 (434)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999998 543

>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
3dl8_G429 Structure Of The Complex Of Aquifex Aeolicus Secyeg 3e-66
3din_C431 Crystal Structure Of The Protein-Translocation Comp 6e-59
2zjs_Y434 Crystal Structure Of Secye Translocon From Thermus 1e-50
3j01_A435 Structure Of The Ribosome-Secye Complex In The Memb 9e-50
2akh_Y400 Normal Mode-Based Flexible Fitted Coordinates Of A 3e-43
3bo0_A442 Ribosome-Secy Complex Length = 442 4e-10
>pdb|3DL8|G Chain G, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 429 Back     alignment and structure 
Iteration: 1

 Score =  249 bits (636), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 148/405 (36%), Positives = 234/405 (57%), Gaps = 17/405 (4%)
Query: 138 LALSRLGIYIPLGGVNREAFVGNLD--QNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ 195
             + RLG +IP+ G+N EA    L   + S+ +  D FSGG +GRL + +LG++P+I+A 
Sbjct: 25  FVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISAS 84
Query: 196 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR-------- 247
           I+ QLL    P LQ L K EG+ GR K+ +YT+Y ++  A VQ++G   ++R        
Sbjct: 85  IMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGI 144
Query: 248 PYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRT 307
           P V +               G+ F  +I +RI++  +GNG SL+IF  I++  P +  + 
Sbjct: 145 PVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQ- 203
Query: 308 VAEAFQDGNYIGLATIIISFILLV---LGIVYVQEAERKIPINYASRYTSRSGGLQRSAY 364
             E  + G+ IG  T+++   L++   +GIVYVQEAER+IPI Y  R   R     R  Y
Sbjct: 204 FYEKVKTGD-IGPLTLLLIIALIIAIIVGIVYVQEAERRIPIQYPGRQVGRQLYAGRKTY 262
Query: 365 LPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFF 424
           LP K+N +GV+PIIF+ + L +P TL  F     +K  A    PG  FY    +  I FF
Sbjct: 263 LPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMFQPGAIFYNFLYVTFIVFF 322
Query: 425 NYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGP 484
            Y+YT + ++P +++E L + GA IP VRPG+ T  +L+ +++R+   G++FL+++A  P
Sbjct: 323 TYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIP 382
Query: 485 AVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKN 529
            +I    ++  +  F GT+ LI+VG A DT R+++  +I +KYK+
Sbjct: 383 ILISVWFNIPFY--FGGTTALIVVGVALDTFRQIETYLIQKKYKS 425
>pdb|3DIN|C Chain C, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 431 Back     alignment and structure
>pdb|2ZJS|Y Chain Y, Crystal Structure Of Secye Translocon From Thermus Thermophilus With A Fab Fragment Length = 434 Back     alignment and structure
>pdb|3J01|A Chain A, Structure Of The Ribosome-Secye Complex In The Membrane Environment Length = 435 Back     alignment and structure
>pdb|2AKH|Y Chain Y, Normal Mode-Based Flexible Fitted Coordinates Of A Non- Translocating Secyeg Protein-Conducting Channel Into The Cryo-Em Map Of A Secyeg-Nascent Chain-70s Ribosome Complex From E. Coli Length = 400 Back     alignment and structure
>pdb|3BO0|A Chain A, Ribosome-Secy Complex Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 1e-136
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 1e-131
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 1e-130
3din_C431 Preprotein translocase subunit SECY; protein trans 1e-128
1rh5_A436 Preprotein translocase SECY subunit; protein trans 2e-86
3mp7_A482 Preprotein translocase subunit SECY; protein trans 6e-82
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 1e-52
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 4e-44
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 429 Back     alignment and structure
 Score =  400 bits (1031), Expect = e-136
 Identities = 154/422 (36%), Positives = 240/422 (56%), Gaps = 14/422 (3%)

Query: 119 FGDFFKGP-LPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNS--LLSTLDSFSG 175
               F+   L  KF+  L    + RLG +IP+ G+N EA    L      + +  D FSG
Sbjct: 5   LKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSG 64

Query: 176 GGIGRLGICSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFA 235
           G +GRL + +LG++P+I+A I+ QLL    P LQ L K EG+ GR K+ +YT+Y ++  A
Sbjct: 65  GNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVA 124

Query: 236 IVQAIGQVLYLR--------PYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNG 287
            VQ++G   ++R        P V +    ++L +V  L  G+ F  +I +RI++  +GNG
Sbjct: 125 TVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNG 184

Query: 288 TSLLIFTSIISYLPASFGRTVAEAFQ-DGNYIGLATIIISFILLVLGIVYVQEAERKIPI 346
            SL+IF  I++  P +  +   +    D   + L  II   I +++GIVYVQEAER+IPI
Sbjct: 185 ASLIIFAGIVANFPNAVIQFYEKVKTGDIGPLTLLLIIALIIAIIVGIVYVQEAERRIPI 244

Query: 347 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVAL 406
            Y  R   R     R  YLP K+N +GV+PIIF+ + L +P TL  F     +K  A   
Sbjct: 245 QYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVIADMF 304

Query: 407 NPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVL 466
            PG  FY    +  I FF Y+YT + ++P +++E L + GA IP VRPG+ T  +L+ ++
Sbjct: 305 QPGAIFYNFLYVTFIVFFTYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERII 364

Query: 467 SRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQK 526
           +R+   G++FL+++A  P +I    ++  +  F GT+ LI+VG A DT R+++  +I +K
Sbjct: 365 NRLIFFGALFLSVIALIPILISVWFNIPFY--FGGTTALIVVGVALDTFRQIETYLIQKK 422

Query: 527 YK 528
           YK
Sbjct: 423 YK 424
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Length = 434 Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Length = 435 Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 431 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query540
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
Probab=100.00  E-value=3.8e-103  Score=836.17  Aligned_cols=410  Identities=32%  Similarity=0.539  Sum_probs=352.9

Q ss_pred             hhhhhc-CchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccc--cchHHHHHhhcCCCCcccceeecCchHHHHHH
Q 009193          119 FGDFFK-GPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQ--NSLLSTLDSFSGGGIGRLGICSLGIVPFINAQ  195 (540)
Q Consensus       119 ~~~~~k-~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~--~~~l~~l~~~sGG~~~~~SLfsLGI~PyItAS  195 (540)
                      +.++|| +++|+|++||++++++||+|+|||+||+|.+++++.+++  +++++++|+|+||+++|+|+|+|||+||||||
T Consensus         5 ~~~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItAS   84 (434)
T 2zjs_Y            5 FWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAA   84 (434)
T ss_dssp             HHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHH
T ss_pred             HHhHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHHHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHH
Confidence            446676 699999999999999999999999999999887653222  46889999999999999999999999999999


Q ss_pred             HHHHHHhhhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-----cccc--cchhHHHHHHHHHHH
Q 009193          196 IVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLR-P-----YVND--FSTDWVLTSVTLLTL  267 (540)
Q Consensus       196 II~QLL~~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~-~-----~~~~--~~~~~~~~ivl~Lva  267 (540)
                      ||||||+.++|.++|++| |||+||||+|++|||+|+++|++||++++..+. .     ...+  .+..++++++++|++
T Consensus        85 II~QLL~~vip~l~~l~k-eGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~a  163 (434)
T 2zjs_Y           85 IIMQILVTVVPALEKLSK-EGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA  163 (434)
T ss_dssp             HHHHHHHHHSHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHH
Confidence            999999999999999985 999999999999999999999999999998763 2     1123  344456788899999


Q ss_pred             HHHHHHHHhHhhhcccCcCcchHHHHHHHhhhhhHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHhheeeccEEeeee
Q 009193          268 GSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDG-NYIGLATIIISFILLVLGIVYVQEAERKIPI  346 (540)
Q Consensus       268 Gs~~l~WL~E~It~~GIGnGiSLiI~~gIis~lP~~i~~~~~~~~~~~-~~~~~l~~l~~~liiv~~iV~l~~aerrIPI  346 (540)
                      |++++|||||+|||||+|||+|++|++||++++|..+.+.++....+. ++..+++.+++++++++++||+|++||||||
T Consensus       164 Gt~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~vi~~vV~~~~~~rrIPv  243 (434)
T 2zjs_Y          164 GIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPV  243 (434)
T ss_dssp             HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred             HHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHheeeEEEEee
Confidence            999999999999999999999999999999999999888765332211 4444455566677888899999999999999


Q ss_pred             eeccccccccCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhC-hhHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 009193          347 NYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG-IAALKKAAVALNPGGSFYLPTNILLIAFFN  425 (540)
Q Consensus       347 ~y~~r~~g~~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~-~~~l~~~~~~~~~~g~~y~~iy~~lii~Fs  425 (540)
                      ||++|.+||+.+.++++|+|+|+|++||||+|||++++++|+++++++. +.|.+....++++++++|.++|++++++|+
T Consensus       244 qyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~~~~y~~~y~~lii~Fs  323 (434)
T 2zjs_Y          244 QYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPTRPSGLFIEVLLVILFT  323 (434)
T ss_dssp             EECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            9999988888888899999999999999999999999999999999764 345555566678888999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHcCCccccccCCchhHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhcccccccccccchhH
Q 009193          426 YYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVL  505 (540)
Q Consensus       426 ~fys~i~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~yL~kvl~rit~iGaifL~lia~lP~ll~~~~~~~~~~~~gGTslL  505 (540)
                      |||+++++||||+||||||||+||||+|||++|++||+|+++|+|++||+|++++|++|+++..+.+.+.+ ++||||+|
T Consensus       324 ~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~~~~~~~-~~gGTslL  402 (434)
T 2zjs_Y          324 YVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSI-AFSGIGLL  402 (434)
T ss_dssp             HHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCG-GGSSHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCcccc-cccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998544354222 47999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHccCCCc
Q 009193          506 ILVGCATDTARKVQAEIISQKYKNI  530 (540)
Q Consensus       506 I~Vgv~ldt~~qI~a~l~~~~Y~~~  530 (540)
                      |+|||++||+||+|+++.++||+++
T Consensus       403 I~VgV~ldt~~qi~s~~~~~~Y~~~  427 (434)
T 2zjs_Y          403 IVVGVALDTLRQVESQLMLRSYEGF  427 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999998
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 540
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 3e-59
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  200 bits (509), Expect = 3e-59
 Identities = 67/431 (15%), Positives = 133/431 (30%), Gaps = 62/431 (14%)

Query: 124 KGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGI 183
           +     K       L L  +   I +     +         ++     + +        +
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI-------PAIFEFWQTITASR--IGTL 69

Query: 184 CSLGIVPFINAQIVFQLLAQINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQV 243
            +LGI P + A I+ QLL      +  +        R       +  S+    V+A+  V
Sbjct: 70  ITLGIGPIVTAGIIMQLLVG--SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFV 126

Query: 244 LYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPAS 303
                 +      +++  +  +  GS    Y+ E +S   +G+G  L I   +   +   
Sbjct: 127 GAGAFGILTPLLAFLV--IIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVG 184

Query: 304 -------FGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRS 356
                    + +    Q    I     II  I++ L +VY +    +IP+ +        
Sbjct: 185 ALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK---- 240

Query: 357 GGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLAR------------FTGIAALKKAAV 404
                    P K      +P+I + +  A                   + G  A+   A 
Sbjct: 241 ---GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAY 297

Query: 405 ALNPGGSFYLPTNILL-------------IAFFNYYYTFLQLDPDDVSEQLKRQGASIPL 451
            L+         +  +             + F  ++     LDP  +++++   G +I  
Sbjct: 298 YLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKG 357

Query: 452 VRPGKSTAA-FLKTVLSRISVLGSVFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGC 510
            R  +      LK  +  ++V+ S F+  LA     I             GT VL+ V  
Sbjct: 358 FRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGAL--------GGGTGVLLTVSI 409

Query: 511 ATDTARKVQAE 521
                 ++  E
Sbjct: 410 VYRMYEQLLRE 420

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query540
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=6.7e-86  Score=701.64  Aligned_cols=371  Identities=19%  Similarity=0.198  Sum_probs=294.5

Q ss_pred             hcCchhhHHHHHHHHHHHHHhCcccccCCcChhhhhhcccccchHHHHHhhcCCCCcccceeecCchHHHHHHHHHHHHh
Q 009193          123 FKGPLPGKFLKLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLA  202 (540)
Q Consensus       123 ~k~~l~~Kil~Tl~iLiIyrlG~~IPLPGId~~~~~~~~~~~~~l~~l~~~sGG~~~~~SLfsLGI~PyItASII~QLL~  202 (540)
                      .|.++|||++||++++++||+|+|||+||+|.++.       +++.+++.++|++  +.|||+|||+||||||||||||+
T Consensus        18 ~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~~-------~~~~~~~~~~a~~--~~Sif~LGI~PyItASIImQLL~   88 (422)
T d1rh5a_          18 KEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-------AIFEFWQTITASR--IGTLITLGIGPIVTAGIIMQLLV   88 (422)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-------SCCTTHHHHHTCC--TTBTTTTTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCcc-------cHHHHHHHHhccc--cccHHHhChHHHHHHHHHHHHHH
Confidence            35699999999999999999999999999987642       5667788888885  67999999999999999999997


Q ss_pred             hhchhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 009193          203 QINPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTDWVLTSVTLLTLGSAFTTYIGERISDL  282 (540)
Q Consensus       203 ~~~p~L~~l~k~ege~Grkki~~~tR~LtlilAiiQa~~~v~~l~~~~~~~~~~~~~~ivl~LvaGs~~l~WL~E~It~~  282 (540)
                      .  |+++++++ |||+||+|+|++|||+|+++|++||.+++.....  .+.+..+.++++++|++|++++|||||+||||
T Consensus        89 ~--~~l~~~~~-~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~--~~~~~~~~~~iv~~L~aGt~~lmwL~E~It~~  163 (422)
T d1rh5a_          89 G--SGIIQMDL-SIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAF--GILTPLLAFLVIIQIAFGSIILIYLDEIVSKY  163 (422)
T ss_dssp             H--HTTSCCCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--hhHHHhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5  89999986 9999999999999999999999999998865432  23444556778899999999999999999999


Q ss_pred             cCcCcchHHHHHHHhhhhhHHHHH-------HHHHHhhcCchhHHHHHHHHHHHHHHHhheeeccEEeeeeeeccccccc
Q 009193          283 KLGNGTSLLIFTSIISYLPASFGR-------TVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSR  355 (540)
Q Consensus       283 GIGnGiSLiI~~gIis~lP~~i~~-------~~~~~~~~~~~~~~l~~l~~~liiv~~iV~l~~aerrIPI~y~~r~~g~  355 (540)
                      |+|||+|++|++||++++|.....       ..............+..++.++++++++||+|++|||||++|+++.   
T Consensus       164 GiGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~i~~~vv~~~~~~~~IPv~~~~~~---  240 (422)
T d1rh5a_         164 GIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIK---  240 (422)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGGTHHHHHHHHHHHHHHHHTTCEEEEECCCSSST---
T ss_pred             CcccchHHHHHHHHHHHHHHhccchhHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc---
Confidence            999999999999999999754321       1111111111222233445566677889999999999999997542   


Q ss_pred             cCCCCCCcccceeecccCChhHHHHHHhHhhHHHHHHhhCh---h---------HHHHHHHhcC-C-----------CCc
Q 009193          356 SGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGI---A---------ALKKAAVALN-P-----------GGS  411 (540)
Q Consensus       356 ~~~~~~~sylPIKln~aGvMPIIFassll~lp~~i~~~~~~---~---------~l~~~~~~~~-~-----------~g~  411 (540)
                          ++++|+|+|+|++|+||+|||++++++|+++++++..   +         +.+.+..++. +           +.+
T Consensus       241 ----~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~  316 (422)
T d1rh5a_         241 ----GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAI  316 (422)
T ss_dssp             ----TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSSCCCSCHHHHH
T ss_pred             ----ccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhcccccccccCCCchHHHHHHHhCCcchhhccccCccchH
Confidence                3578999999999999999999999999999887521   0         1111112221 1           123


Q ss_pred             chHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHcCCccccccCCchhHH-HHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 009193          412 FYLPTNILLIAFFNYYYTFL-QLDPDDVSEQLKRQGASIPLVRPGKSTAA-FLKTVLSRISVLGSVFLAILAAGPAVIEQ  489 (540)
Q Consensus       412 ~y~~iy~~lii~Fs~fys~i-~~nPkdiAe~Lkk~G~~IpGiRPG~~T~~-yL~kvl~rit~iGaifL~lia~lP~ll~~  489 (540)
                      +|.++|++++++|+|||+.+ ++||||+||||||||++|||+|||++|.+ ||+|+++|+|++||+|++++|++|++++ 
T Consensus       317 ~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~rit~~Ga~~l~~ia~~p~~l~-  395 (422)
T d1rh5a_         317 VYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIG-  395 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            57788889999999999887 69999999999999999999999999965 6999999999999999999999999974 


Q ss_pred             hcccccccccccchhHHHHHHHHHHHHHHHHHH
Q 009193          490 TTHLTAFRGFAGTSVLILVGCATDTARKVQAEI  522 (540)
Q Consensus       490 ~~~~~~~~~~gGTslLI~Vgv~ldt~~qI~a~l  522 (540)
                           .+  +||||+||+|||++|++||+++|+
T Consensus       396 -----~~--~gGTslLI~V~v~l~~~~qi~~e~  421 (422)
T d1rh5a_         396 -----AL--GGGTGVLLTVSIVYRMYEQLLRER  421 (422)
T ss_dssp             -----CT--TCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -----Hh--cchHHHHHHHHHHHHHHHHHHHhh
Confidence                 33  589999999999999999999864