Citrus Sinensis ID: 009195
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 540 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYR6 | 624 | Probable peptide/nitrate | yes | no | 0.959 | 0.830 | 0.682 | 0.0 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.844 | 0.8 | 0.367 | 1e-100 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.853 | 0.808 | 0.356 | 9e-93 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.846 | 0.781 | 0.355 | 2e-92 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.855 | 0.783 | 0.354 | 1e-88 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.774 | 0.766 | 0.319 | 8e-75 | |
| Q9SZY4 | 577 | Nitrate transporter 1.4 O | no | no | 0.859 | 0.804 | 0.342 | 5e-74 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.851 | 0.771 | 0.308 | 8e-70 | |
| P0CI03 | 575 | Putative peptide/nitrate | no | no | 0.824 | 0.773 | 0.313 | 1e-69 | |
| Q05085 | 590 | Nitrate transporter 1.1 O | no | no | 0.85 | 0.777 | 0.326 | 4e-68 |
| >sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/614 (68%), Positives = 469/614 (76%), Gaps = 96/614 (15%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---------- 410
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 411 ---------------------------GHPRGASQLQRVGIGLAVSILSVIWAA------ 437
G+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 438 -----------------PD----------------------------------AMKSIGS 446
PD AMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 447 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 506
AYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINTGRFD LYWLL +LS +NF
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNF 598
Query: 507 CAFLYSAYRYKYRS 520
C FL+SA+RYKYR+
Sbjct: 599 CVFLWSAHRYKYRA 612
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/563 (36%), Positives = 300/563 (53%), Gaps = 107/563 (19%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++ A ++N V
Sbjct: 13 VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P N D
Sbjct: 72 TNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD- 130
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K FF
Sbjct: 131 ------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR + PGGS
Sbjct: 184 NWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ + DKAA+E
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAVES 302
Query: 352 KEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V Q TM+
Sbjct: 303 QSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQ 362
Query: 409 HMG--------------------------------------HPRGASQLQRVGIGLAVSI 430
HMG + RG +QLQR+GIGL VSI
Sbjct: 363 HMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSI 422
Query: 431 -----------------------------LSVIW-------------------------A 436
+S+ W
Sbjct: 423 FAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQ 482
Query: 437 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYW 496
APDAM+S+ SA + LG + +++L +++ +T K G+P W+ N+N G DY ++
Sbjct: 483 APDAMRSLCSALSLTTVALGNYLSTVLVTVVMKIT--KKNGKPGWIPDNLNRGHLDYFFY 540
Query: 497 LLAVLSVINFCAFLYSAYRYKYR 519
LLA LS +NF +L+ + RYKY+
Sbjct: 541 LLATLSFLNFLVYLWISKRYKYK 563
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 341 bits (874), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 203/569 (35%), Positives = 291/569 (51%), Gaps = 108/569 (18%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+ +S +V
Sbjct: 14 LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSV 72
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P C
Sbjct: 73 SNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT---CS- 128
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
G A + Q + LY+ G GI+PCVSSFGADQFD+ + K FF
Sbjct: 129 -----GETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR + PGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
PLTR+ QV+VA+ RK E + LYE S+I GS K+ HT DKAA+E
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302
Query: 352 KED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+ D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V Q T++
Sbjct: 303 ESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQ 362
Query: 409 HM--------------------------------------GHPRGASQLQRVGIGLAVSI 430
HM GH RG +QLQR+GIGL +SI
Sbjct: 363 HMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISI 422
Query: 431 LSVI-----------------------------WAAP----------------------- 438
S++ W P
Sbjct: 423 FSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQ 482
Query: 439 --DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYW 496
DAM+S+ SA + A G + ++ L +++ VT + G+P W+A+N+N G DY +W
Sbjct: 483 APDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRS--GGRPGWIAKNLNNGHLDYFFW 540
Query: 497 LLAVLSVINFCAFLYSAYRYKYRSEQKHG 525
LLA LS +NF +L+ A Y Y+ H
Sbjct: 541 LLAGLSFLNFLVYLWIAKWYTYKKTTGHA 569
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 200/563 (35%), Positives = 293/563 (52%), Gaps = 106/563 (18%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGH-------------------------------------PRGASQLQRVGIGLAVSIL 431
+G +G +++QR+GIGL VS+L
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440
Query: 432 ------------------------------SVIW-------------------------A 436
SV+W
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500
Query: 437 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYW 496
+PDAM+S+ SA A L LG + +S++ +++ T + GQ W++ N+N+G DY +W
Sbjct: 501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFT--TRNGQEGWISDNLNSGHLDYFFW 558
Query: 497 LLAVLSVINFCAFLYSAYRYKYR 519
LLA LS++N + +SA RYK +
Sbjct: 559 LLAGLSLVNMAVYFFSAARYKQK 581
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 199/561 (35%), Positives = 289/561 (51%), Gaps = 99/561 (17%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E +N L G+ ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 24 EVNNHLTGLSSTAEDGS--IDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMNTHM-------------------------------------G 411
+V+ ++ TL VQQ +MN + G
Sbjct: 375 SVLYSQISTLFVQQGRSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTG 434
Query: 412 HPRGASQLQRVGIGLAVSILSVIWAA---------------------------------- 437
P+G + LQR+GIGL +S+LS+ AA
Sbjct: 435 IPKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQDFVAMSIFWQIPQYILMGIAEVF 494
Query: 438 -------------PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 484
PDAM+S+ SA A L +G + +S++ +++ T G+ W+
Sbjct: 495 FFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTA--LGGKDGWVPD 552
Query: 485 NINTGRFDYLYWLLAVLSVIN 505
++N G DY +WLL L ++N
Sbjct: 553 DLNKGHLDYFFWLLVSLGLVN 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 281 bits (720), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 179/561 (31%), Positives = 271/561 (48%), Gaps = 143/561 (25%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
+++HG P TG W A FIF NE ER+AY+G++ N++T+ +H++ ++ V
Sbjct: 31 IDIHGNPPLK-QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G +ADAY GRYWTIA F+ IY G+ +TL A++ P
Sbjct: 90 MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKP------- 142
Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
++ +GS C PA Q L++ LY+ G GI+PCVSSFGADQFD+ + F
Sbjct: 143 -AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201
Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
FN+FY ++ +GA V+ T++V+IQ +GW F + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261
Query: 291 SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALE 350
SP+T V QVLVAA+RK + +VP + S +G
Sbjct: 262 SPITSVCQVLVAAYRKSN-----------LKVP-EDSTDEGDA----------------- 292
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
N +PWKLCTVTQVEEVK L+RLVPI A I+ +V+ ++ TL VQQ M +
Sbjct: 293 ------NTNPWKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTI 346
Query: 411 GH-------------------------------------PRGASQLQRVGIGLAVSIL-- 431
G +G ++LQR+GIGL VS+L
Sbjct: 347 GLFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSL 406
Query: 432 ----------------------------SVIWA-------------------------AP 438
++ W +P
Sbjct: 407 TFAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSP 466
Query: 439 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL-AQNINTGRFDYLYWL 497
D+M+S+ SA+A L LG + +S++ +++ ++G + W+ + NIN G DY +WL
Sbjct: 467 DSMRSLCSAWALLTTTLGNYLSSLIITLVAYLSG-----KDCWIPSDNINNGHLDYFFWL 521
Query: 498 LAVLSVINFCAFLYSAYRYKY 518
L L +N F++ + +Y +
Sbjct: 522 LVSLGSVNIPVFVFFSVKYTH 542
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 199/581 (34%), Positives = 285/581 (49%), Gaps = 117/581 (20%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G + + + P C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRP--PTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I+ I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHM-------------------------------------GHPRGASQLQRVGIGLA 427
TM ++ G P G S LQR+ IGL
Sbjct: 359 TMRRNIGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGLV 417
Query: 428 VSI-------------LSV--------------------------------------IWA 436
+S LSV I
Sbjct: 418 LSTAGMAAAALVEQKRLSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQ 477
Query: 437 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYW 496
+P MK++ + LG F +S L SI+K VT WLA NIN GR DY YW
Sbjct: 478 SPKGMKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTST--DVGWLADNINHGRLDYFYW 535
Query: 497 LLAVLSVINF-----CAFLYSAYRYKYRSEQKHGNDYEVME 532
LL +LS INF CA + + K E+++G + V +
Sbjct: 536 LLVILSGINFVVYIICALWFKPTKGKDSVEKENGKGFSVED 576
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 176/571 (30%), Positives = 266/571 (46%), Gaps = 111/571 (19%)
Query: 53 NVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN 112
+HG+P GG I FIF NE+ E++A G NM++++ +H ++N +
Sbjct: 15 QLHGRPN---RPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71
Query: 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172
NF G S + +LG F+AD++ GR+WTI + IY G+T +T+ A + P + +
Sbjct: 72 NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131
Query: 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232
C A + Q+ LY L + G+ GIRPCV +FGADQFDE + T +FN
Sbjct: 132 ------CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFN 185
Query: 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSP 292
++Y + ++A T++V+IQ GWG G +AM +S + F G LYRH +P GSP
Sbjct: 186 WYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSP 245
Query: 293 LTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELK 352
TR+ QV VAAFRKR S + LY + I GK+ HT LDKAA+ +
Sbjct: 246 FTRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTE 304
Query: 353 EDVIN----PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
ED + P+ W+L TV +VEE+K+++R+ PI A I+L + T S+QQA TMN
Sbjct: 305 EDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNR 364
Query: 409 HM--------------------------------------GHPRGASQLQRVGIGLAVSI 430
H+ G RG + L R+GIG +SI
Sbjct: 365 HLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISI 424
Query: 431 -------------------------------LSVIWAAP--------------------- 438
+S +W P
Sbjct: 425 IATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFY 484
Query: 439 ----DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDY 493
++M+S +A +A +G + +++L +++ + P NWL N+N GR +Y
Sbjct: 485 DQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGS--NWLPDNNLNRGRLEY 542
Query: 494 LYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 524
YWL+ VL +N +L+ A Y Y+ Q H
Sbjct: 543 FYWLITVLQAVNLVYYLWCAKIYTYKPVQVH 573
|
May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 172/548 (31%), Positives = 269/548 (49%), Gaps = 103/548 (18%)
Query: 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
++TG W AALFI E +ER++YFGL+ N+V ++ ++++ + VN + G++
Sbjct: 37 ARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMP 96
Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182
+LGGF+ADAYLGRY T+ + TTIYL GL + TM F+P C + EP
Sbjct: 97 LLGGFIADAYLGRYATVLVATTIYLMGL----VLLTMSWFIPGLKPCHQEV----CVEPR 148
Query: 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242
K+ ++ + + +Y+ G G +P + SFGADQFD+ + + FFN++ +S+ G
Sbjct: 149 KAHEVAF-FIAIYLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAGI 207
Query: 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA 302
+ A T V YI+ GWG A L + M IS ++FFIG P YR+R P GSPLT + QV VA
Sbjct: 208 LTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVA 267
Query: 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGK-IAHTDDFRCLDKAALELKEDVI---NP 358
A KR+ + S + L+EV SG+ + HT+ + LDKAA+ ++ +
Sbjct: 268 AIAKRNLPYPSDPSL-LHEVSKTEFT---SGRLLCHTEHLKFLDKAAIIEDKNPLALEKQ 323
Query: 359 SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG------- 411
SPW+L T+T+VEE K ++ ++PI T+ + T+ T ++QA TM+ H+G
Sbjct: 324 SPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGGFTVPPA 383
Query: 412 ------------------------------HPRGASQLQRVGIGLAVSI----------- 430
+ RG + LQR+G G+ S+
Sbjct: 384 SMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALVEK 443
Query: 431 -----------LSVIWAA-------------------------PDAMKSIGSAYAALAGG 454
+SVIW A PD+M+S+G A+ G
Sbjct: 444 QRLDRTNNNKPMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIG 503
Query: 455 LGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 514
F ++L + + ++ N +W +++N+ R D YW LA + N C F+ A
Sbjct: 504 AASFLNNLLITAVDTLAEN--FSGKSWFGKDLNSSRLDRFYWFLAGVIAANICVFVIVAK 561
Query: 515 RYKYRSEQ 522
R Y+S Q
Sbjct: 562 RCPYKSVQ 569
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q05085|PTR7_ARATH Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 185/567 (32%), Positives = 277/567 (48%), Gaps = 108/567 (19%)
Query: 53 NVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN 112
+ G+P AD SKTGGW +A I E ER+ G+ VN+VT++ MH A ++N V
Sbjct: 17 DFQGRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVT 75
Query: 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172
NFLG S +LGGF+AD +LGRY TIAIF I G++ +TL + P + N
Sbjct: 76 NFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTS 135
Query: 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232
S CE A Q+ LY LY+T G G++ VS FG+DQFDE ++ + FFN
Sbjct: 136 SH----CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFN 191
Query: 233 FFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
F+ + VG+++A T++VY+Q + G WG A AI + +S +F GT YR + G
Sbjct: 192 RFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIG 249
Query: 291 SPLTRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA 348
SP+T+VA V+VAA+R R + S L + ++ ++KG K+ HT+ FR LDKAA
Sbjct: 250 SPMTQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAA 309
Query: 349 LELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT 405
+ +E + + W L T+T VEEVK +VR++PI A I+ + + TLSV Q+ T
Sbjct: 310 IRDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSET 369
Query: 406 MNTHMG-------------------------------------HPRGASQLQRVGIGLAV 428
++ +G +P G LQR+G+GL
Sbjct: 370 LDRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFF 429
Query: 429 SILSVIWAAPDAMKSIGSAYA--------------------------------------- 449
+++ AA +K + +A+A
Sbjct: 430 GSMAMAVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLR 489
Query: 450 -------ALAGGL-------GCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLY 495
++ GL G F +S+L +I++ TG K P W+A ++N GR Y
Sbjct: 490 ECPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTG---KAHP-WIADDLNKGRLYNFY 545
Query: 496 WLLAVLSVINFCAFLYSAYRYKYRSEQ 522
WL+AVL +NF FL + Y Y+ ++
Sbjct: 546 WLVAVLVALNFLIFLVFSKWYVYKEKR 572
|
Dual affinity nitrate transporter. Involved in proton-dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be involved in the basipetal transport of auxin out of the lateral root tips. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 540 | ||||||
| 224053581 | 638 | predicted protein [Populus trichocarpa] | 0.987 | 0.835 | 0.718 | 0.0 | |
| 296085541 | 606 | unnamed protein product [Vitis vinifera] | 0.988 | 0.881 | 0.725 | 0.0 | |
| 449468910 | 637 | PREDICTED: probable peptide/nitrate tran | 0.990 | 0.839 | 0.679 | 0.0 | |
| 225425292 | 640 | PREDICTED: probable peptide/nitrate tran | 0.988 | 0.834 | 0.683 | 0.0 | |
| 356569101 | 631 | PREDICTED: probable peptide/nitrate tran | 0.970 | 0.830 | 0.684 | 0.0 | |
| 357501519 | 638 | Peptide transporter-like protein [Medica | 0.970 | 0.821 | 0.671 | 0.0 | |
| 147771745 | 612 | hypothetical protein VITISV_040927 [Viti | 0.948 | 0.836 | 0.677 | 0.0 | |
| 147866216 | 626 | hypothetical protein VITISV_008303 [Viti | 0.966 | 0.833 | 0.671 | 0.0 | |
| 15240621 | 624 | putative peptide/nitrate transporter [Ar | 0.959 | 0.830 | 0.682 | 0.0 | |
| 297811451 | 625 | proton-dependent oligopeptide transport | 0.959 | 0.828 | 0.684 | 0.0 |
| >gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/632 (71%), Positives = 493/632 (78%), Gaps = 99/632 (15%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
MGS EIKSPE L ETPAT S+ KKL +YF+ESDNRRMA GRGYTGGTTPV++HG
Sbjct: 1 MGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFY+MH+ F SSNAVNNFLG
Sbjct: 61 KPIPDLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQ SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +FMP+Q CD++S LL
Sbjct: 121 ISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
G+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYL
Sbjct: 181 GNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHTDDFRCLDKAAL+LKED +
Sbjct: 301 AQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKEDGV 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGH---- 412
+PSPW+LCTVTQVEEVK L++LVPIPACTIMLN+ILTE+LTLSVQQAYT+NTH+GH
Sbjct: 361 DPSPWRLCTVTQVEEVKILIKLVPIPACTIMLNLILTEYLTLSVQQAYTLNTHLGHLKLP 420
Query: 413 ---------------------------------PRGASQLQRVGIGLAVSI--------- 430
PRGASQLQRVGIGLA SI
Sbjct: 421 VTSMPVFPCLSIFLILSLYYSVFVPIFRRITGHPRGASQLQRVGIGLAFSILSVAWAAIF 480
Query: 431 -----------------------LSVIW-------------------------AAPDAMK 442
LS W APDAMK
Sbjct: 481 ERYRRKYAIEHGYEFSFLTPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 540
Query: 443 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 502
SIGSAYAALAGG+GCFAASILNSI+KSVTGNP K Q +WL+QNINTGRF+Y YWLL VLS
Sbjct: 541 SIGSAYAALAGGIGCFAASILNSIVKSVTGNPDKRQQSWLSQNINTGRFEYFYWLLTVLS 600
Query: 503 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 534
INFCAFLYSA RYKYR+EQK G EV+ NK
Sbjct: 601 AINFCAFLYSARRYKYRAEQKFGIQ-EVVTNK 631
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/598 (72%), Positives = 481/598 (80%), Gaps = 64/598 (10%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM------ 410
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 411 -------------------------------GHPRGASQLQRVGIGLAVSILSVIWA--- 436
GHP GASQLQRVGIGLAVSILSV WA
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGYC 480
Query: 437 --------------------APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK 476
APDAM+SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++
Sbjct: 481 LIGIAEVFCIVGLLEFLYEEAPDAMRSIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQ 540
Query: 477 GQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 534
P+WL+QNINTGRFDYLYWLL V SVINFC FLYSA RYKYR Q+ + E + K
Sbjct: 541 MHPSWLSQNINTGRFDYLYWLLTVFSVINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 598
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/637 (67%), Positives = 482/637 (75%), Gaps = 102/637 (16%)
Query: 1 MGSREIKSPESLQETPAT------SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNV 54
MGSREIKS + ETP S S QRKKL ++FIESD+RR A GRGYTGGTTPVN+
Sbjct: 1 MGSREIKSLHEVNETPVLGRLDEHSESFQRKKLGMFFIESDDRRTAFGRGYTGGTTPVNI 60
Query: 55 HGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF 114
GKPIADLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH F SS+AVNNF
Sbjct: 61 RGKPIADLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNF 120
Query: 115 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174
LGISQASSVLGGFLADAYLGRYWTIAIFTTIYL GL GITLCAT+ F+PNQ CD++S
Sbjct: 121 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSL 180
Query: 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234
LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFF
Sbjct: 181 LLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFF 240
Query: 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294
YLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLT
Sbjct: 241 YLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLT 300
Query: 295 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED 354
RVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HTDDFRCLDKAAL+LKED
Sbjct: 301 RVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKED 360
Query: 355 VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG--- 411
NPSPWKLCTVTQVEEVK L++L+PIPACTIMLN++LTE+LTLSVQQAYTMNTH+G
Sbjct: 361 GGNPSPWKLCTVTQVEEVKILLKLIPIPACTIMLNLVLTEYLTLSVQQAYTMNTHIGRLK 420
Query: 412 ----------------------------------HPRGASQLQRVGIGLAVSI------- 430
HP GASQLQRVGIGLA+SI
Sbjct: 421 LPVTCMPVFPGLSIFLILSLYYSVFVPLSRRITGHPHGASQLQRVGIGLAISILSVAWAG 480
Query: 431 -------------------------LSVIW-------------------------AAPDA 440
LS W APDA
Sbjct: 481 AFERYRRNFAIRSGYEASFLSPMPNLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 540
Query: 441 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAV 500
MKSIGSAYAALAGGLGCFAAS+LNSIIKSVTG+P P+WL+QNINTGRFDY YWLL V
Sbjct: 541 MKSIGSAYAALAGGLGCFAASLLNSIIKSVTGSPNGRNPSWLSQNINTGRFDYFYWLLTV 600
Query: 501 LSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYD 537
+S+INFC FLYSA++YKYR + + G +MEN ++D
Sbjct: 601 MSIINFCIFLYSAHKYKYRKDHEVGEG--IMENGMHD 635
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/632 (68%), Positives = 479/632 (75%), Gaps = 98/632 (15%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 360
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG----- 411
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G
Sbjct: 361 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 420
Query: 412 --------------------------------HPRGASQLQRVGIGLAVSI--------- 430
HP GASQLQRVGIGLAVSI
Sbjct: 421 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 480
Query: 431 -----------------------LSVIW-------------------------AAPDAMK 442
LS W APDAM+
Sbjct: 481 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 540
Query: 443 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 502
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINTGRFDYLYWLL V S
Sbjct: 541 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 600
Query: 503 VINFCAFLYSAYRYKYRSEQKHGNDYEVMENK 534
VINFC FLYSA RYKYR Q+ + E + K
Sbjct: 601 VINFCIFLYSAQRYKYRVAQEGTMEEEAVSKK 632
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/618 (68%), Positives = 466/618 (75%), Gaps = 94/618 (15%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M S EIKSP + +S +RKKL++YFIES++RRMA GRGYT G+TPV++HGK I
Sbjct: 1 MDSSEIKSPAEGSQQGTPGNSLRRKKLAIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIV 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 DLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT+ F+PNQ+ CD+ S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+
Sbjct: 181 AAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTI 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDFR LDKAAL+LKED NPSP
Sbjct: 301 VAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKEDGANPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG--------- 411
W+LCTVTQVEEVK L++L+PIPACTIMLNV+LTEFLTLSVQQAYT+NTH+G
Sbjct: 361 WRLCTVTQVEEVKILMKLIPIPACTIMLNVVLTEFLTLSVQQAYTLNTHLGRLKLPVTCM 420
Query: 412 ----------------------------HPRGASQLQRVGIGLAVSI------------- 430
HP GASQLQRVGIGLAVSI
Sbjct: 421 PVFPGLSVFLILSLYYSIFVPVFRRITGHPHGASQLQRVGIGLAVSILSVAWAAIFERYR 480
Query: 431 -------------------LSVIW-------------------------AAPDAMKSIGS 446
LS W APDAMKSIGS
Sbjct: 481 RNYAIKHGYLASFLTAMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 447 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 506
AYAALAGGLGCF A+I+N+IIKS TGN KGQP+WL+QNINTGRFDY YWLL LS+INF
Sbjct: 541 AYAALAGGLGCFVATIINNIIKSATGNLDKGQPSWLSQNINTGRFDYFYWLLTALSIINF 600
Query: 507 CAFLYSAYRYKYRSEQKH 524
F+YSA+RYKYR Q H
Sbjct: 601 AIFVYSAHRYKYREHQVH 618
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/628 (67%), Positives = 474/628 (75%), Gaps = 104/628 (16%)
Query: 1 MGSREIKSPESLQE-TPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPI 59
M + EIKSPE+ Q+ TP TS S RKKL ++FIES++RRMALGRGYT G+TPVN+HGK I
Sbjct: 1 MDTCEIKSPEAPQQGTPCTSMS--RKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSI 58
Query: 60 ADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQ 119
DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQ
Sbjct: 59 EDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQ 118
Query: 120 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+C
Sbjct: 119 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNC 178
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT
Sbjct: 179 EPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVT 238
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQV
Sbjct: 239 IGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQV 298
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAA+RKR +F +SE++GLYEVPG+ SAIKGS KIAHTDDFR LDKAAL+LK+D NPS
Sbjct: 299 LVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPS 358
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG-------- 411
W LCTVTQVEEVK L++L+PIPACTIMLNVILTEFLTLSVQQAYT+NTH+G
Sbjct: 359 QWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTC 418
Query: 412 -----------------------------HPRGASQLQRVGIGLAVSI------------ 430
HP GASQLQR+GIGL VSI
Sbjct: 419 MPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQRIGIGLGVSILSVAWAAIFEKY 478
Query: 431 --------------------LSVIW-------------------------AAPDAMKSIG 445
LS W APDAMKSIG
Sbjct: 479 RRNYAIKNEFEASFLTPMPNLSAYWLLIQYCLIGVAEVFCIVGLLEFLYEEAPDAMKSIG 538
Query: 446 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 505
SAYAALAGGLGCF A+ +NS++KS TGN K Q +WL+QNINTG+FDY YW+L LS++N
Sbjct: 539 SAYAALAGGLGCFFATFINSVVKSATGNSDKRQESWLSQNINTGKFDYFYWVLTALSLVN 598
Query: 506 FCAFLYSAYRYKYRSEQ-------KHGN 526
FC FLYSA+RYKYR++ KH N
Sbjct: 599 FCIFLYSAHRYKYRTQHVYEMESIKHDN 626
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/620 (67%), Positives = 465/620 (75%), Gaps = 108/620 (17%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFR +D
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFR----------KDGA 350
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG----- 411
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G
Sbjct: 351 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 410
Query: 412 --------------------------------HPRGASQLQRVGIGLAVSI--------- 430
HP GASQLQRVGIGLAVSI
Sbjct: 411 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 470
Query: 431 -----------------------LSVIW-------------------------AAPDAMK 442
LS W APDAM+
Sbjct: 471 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 530
Query: 443 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 502
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINTGRFDYLYWLL V S
Sbjct: 531 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 590
Query: 503 VINFCAFLYSAYRYKYRSEQ 522
VINFC FLYSA RYKYR+ Q
Sbjct: 591 VINFCIFLYSAQRYKYRAFQ 610
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/627 (67%), Positives = 467/627 (74%), Gaps = 105/627 (16%)
Query: 1 MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
M +REIKSPE ETPA+ S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1 MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
KPI DL K + GNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61 KPIPDLFKD-------WRLGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 113
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 114 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 173
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 174 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 233
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 234 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 293
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVI 356
AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDFRCLDKAAL+LKED
Sbjct: 294 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKEDGA 353
Query: 357 NPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG----- 411
PSPW+LCTVTQVEEVK LV+L+PIPACTI+L++ILTEFLTLSVQQAYT+NTH+G
Sbjct: 354 APSPWRLCTVTQVEEVKILVKLLPIPACTIILSLILTEFLTLSVQQAYTLNTHIGRLKLP 413
Query: 412 --------------------------------HPRGASQLQRVGIGLAVSI--------- 430
HP GASQLQRVGIGLAVSI
Sbjct: 414 VTCMPVFPGLSIFLILSLYYSIFVPISRRITGHPHGASQLQRVGIGLAVSILSVAWAGVF 473
Query: 431 -----------------------LSVIW-------------------------AAPDAMK 442
LS W APDAM+
Sbjct: 474 ERYRRNYAIKQGYEFTFLTPMPHLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMR 533
Query: 443 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLS 502
SIGSAYAA+AGGLGCF A+ILNSIIKS+TG+ ++ P+WL+QNINTGRFDYLYWLL V S
Sbjct: 534 SIGSAYAAVAGGLGCFGATILNSIIKSITGDRQQMHPSWLSQNINTGRFDYLYWLLTVFS 593
Query: 503 VINFCAFLYSAYRYKYRSEQKHGNDYE 529
VINFC FLYSA RYKYR Q+ + E
Sbjct: 594 VINFCIFLYSAQRYKYRVAQEGTMEEE 620
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/614 (68%), Positives = 469/614 (76%), Gaps = 96/614 (15%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---------- 410
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 411 ---------------------------GHPRGASQLQRVGIGLAVSILSVIWAA------ 437
G+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 PVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENYR 480
Query: 438 -----------------PD----------------------------------AMKSIGS 446
PD AMKSIGS
Sbjct: 481 RHYAIQNGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGS 540
Query: 447 AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINF 506
AYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINTGRFD LYWLL +LS +NF
Sbjct: 541 AYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLNF 598
Query: 507 CAFLYSAYRYKYRS 520
C FL+SA+RYKYR+
Sbjct: 599 CVFLWSAHRYKYRA 612
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/615 (68%), Positives = 471/615 (76%), Gaps = 97/615 (15%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
SSVLGGFLADAYLGRYWTIAIFTT+YL L GITL A++K+F+P+Q NC ++S LLG+C
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNC 180
Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT
Sbjct: 181 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVT 240
Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
+GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQV
Sbjct: 241 LGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQV 300
Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPS 359
LVAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H+DDF LDKAAL+LKED + PS
Sbjct: 301 LVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKEDGLEPS 360
Query: 360 PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM--------- 410
PWKLCTVTQVEEVK L+RL+PIPACTIML+++LTE+LTLSVQQAYT+NTH+
Sbjct: 361 PWKLCTVTQVEEVKILIRLIPIPACTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTC 420
Query: 411 ----------------------------GHPRGASQLQRVGIGLAVSILSVIWAA----- 437
G+P GASQLQRVGIGLAVSI+SV WA
Sbjct: 421 MPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFENY 480
Query: 438 ------------------PD----------------------------------AMKSIG 445
PD AMKSIG
Sbjct: 481 RRHYAIQHGFEFNFLTQMPDLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG 540
Query: 446 SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN 505
SAYAALAGGLGCFAA+ILN+I+K+ T + +WL+QNINTGRFD LYWLL +LS +N
Sbjct: 541 SAYAALAGGLGCFAATILNNIVKAATRDSDG--KSWLSQNINTGRFDCLYWLLTLLSFLN 598
Query: 506 FCAFLYSAYRYKYRS 520
FC FL+SA+RYKYR+
Sbjct: 599 FCVFLWSAHRYKYRA 613
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 540 | ||||||
| TAIR|locus:2181655 | 624 | AT5G13400 [Arabidopsis thalian | 0.807 | 0.698 | 0.789 | 6.1e-207 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.659 | 0.624 | 0.437 | 3.4e-99 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.7 | 0.663 | 0.413 | 8.9e-95 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.687 | 0.634 | 0.410 | 1.4e-92 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.679 | 0.622 | 0.430 | 5.4e-91 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.640 | 0.599 | 0.411 | 3.6e-78 | |
| TAIR|locus:2161438 | 582 | PTR3 "peptide transporter 3" [ | 0.659 | 0.611 | 0.356 | 1.3e-76 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.642 | 0.582 | 0.382 | 1.8e-75 | |
| TAIR|locus:2084500 | 602 | AT3G53960 [Arabidopsis thalian | 0.620 | 0.556 | 0.376 | 1.3e-72 | |
| TAIR|locus:2008855 | 590 | NRT1.1 "nitrate transporter 1. | 0.646 | 0.591 | 0.396 | 4.7e-72 |
| TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1795 (636.9 bits), Expect = 6.1e-207, Sum P(2) = 6.1e-207
Identities = 345/437 (78%), Positives = 387/437 (88%)
Query: 1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60
Query: 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
+LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F SSNAVNNFLGISQA
Sbjct: 61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120
Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180
Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240
Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300
Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSP 360
VAAFRKR+AAF+SSE IGLYEVPG SAI GS KI H++DF LDKAALELKED + PSP
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLEPSP 360
Query: 361 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGHPRGASQLQ 420
WKLCTVTQVEEVK L+RL+PIP CTIML+++LTE+LTLSVQQAYT+NTH+ H +
Sbjct: 361 WKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPVTCM 420
Query: 421 RVGIGLAVS-ILSVIWA 436
V GL++ ILS+ ++
Sbjct: 421 PVFPGLSIFLILSLYYS 437
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 3.4e-99, Sum P(3) = 3.4e-99
Identities = 162/370 (43%), Positives = 229/370 (61%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T V++H P A+ KTG W A FI GNE ER+AY+G+ N+V ++ +++
Sbjct: 7 YTQDGT-VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
A ++N V N+ G + ++G F+ADAYLGRYWTIA F IY++G+T +TL A++ P
Sbjct: 65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
N D +C P S Q + LY+ G GI+PCVSSFGADQFDE ++ K
Sbjct: 125 GNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY S+ VGA++A T++V+IQM GWG FG +AM I+ FF G+ YR
Sbjct: 177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VAAFRK + + L+E S IKGS K+ HTD+ +
Sbjct: 237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFF 295
Query: 345 DKAALELKEDVINP---SPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D I +PW+LC+VTQVEE+K+++ L+P+ A I+ + ++ T+ V
Sbjct: 296 DKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVL 355
Query: 402 QAYTMNTHMG 411
Q TM+ HMG
Sbjct: 356 QGNTMDQHMG 365
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 8.9e-95, Sum P(3) = 8.9e-95
Identities = 164/397 (41%), Positives = 234/397 (58%)
Query: 45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
YT T +++H KP A+ +KTG W A FI G E ER+AY+G+S N++ ++ M+
Sbjct: 8 YTKDGT-LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMEN 65
Query: 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
+S +V+N+ G A+ ++G F+ADAYLGRYWTIA F IY+AG+T +T+ A++ P
Sbjct: 66 VSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP 125
Query: 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
C +C A + Q + LY+ G GI+PCVSSFGADQFD+ + K
Sbjct: 126 T---CSG-----ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176
Query: 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
FFN+FY + VGA++A +++V+IQM GWG G +AM I+ + FF G+ YR
Sbjct: 177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236
Query: 285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 344
+ PGGSPLTR+ QV+VA+ RK E + LYE S+I GS K+ HT
Sbjct: 237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFF 295
Query: 345 DKAALELKED---VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQ 401
DKAA+E + D S WKLCTVTQVEE+K L+RL+PI A I+ + ++ T+ V
Sbjct: 296 DKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVL 355
Query: 402 QAYTMNTHMGHPRGASQLQRVGIGLAVSILSVIWAAP 438
Q T++ HMG P ++ + L LSV++ AP
Sbjct: 356 QGNTLDQHMG-PN--FKIPSASLSL-FDTLSVLFWAP 388
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 1.4e-92, Sum P(3) = 1.4e-92
Identities = 159/387 (41%), Positives = 228/387 (58%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ +G P KTG W A FI GNE ER+AY+G++ N++T++ +H+ ++ V
Sbjct: 30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+ G + ++G LADAY GRYWTIA F+ IY G++ +TL A++ P + C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
I S PA Q + LY+ G GI+PCVSSFGADQFD+ + FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N+FY S+ +GA+V+ +L+V+IQ GWG FG + MG++ FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+TR++QV+VA+FRK + LYE K+SAI GS KI HTDD + LDKAA+
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320
Query: 352 KEDVIN---PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E+ + + W+LCTVTQVEE+K L+R+ PI A I+ + + + T+ VQQ MN
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380
Query: 409 HMGHPRGASQLQRVGIGLAVSILSVIW 435
+G + QL +G + +IW
Sbjct: 381 KIG----SFQLPPAALGTFDTASVIIW 403
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 5.4e-91, Sum P(3) = 5.4e-91
Identities = 163/379 (43%), Positives = 230/379 (60%)
Query: 33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
E N + G T ++++G P + KTG W A FI GNE ER+AY+G++ N+
Sbjct: 23 EEVNNHLT-GLSSTAEDGSIDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80
Query: 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
+T+ +H+S +++ V + G + ++G +AD+Y GRYWTIA F+ IY G+
Sbjct: 81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140
Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
+TL A++ V P C ++ L C PA + Q +T LY+ G GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
ADQFD+ + FFN+FY S+ +G+ ++ TL+V++Q GWG F + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
FFIGTPLYR + PGGSP+TRV QVLVAA+RK ++ LYE K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLYETREKNSMIAGS 315
Query: 333 GKIAHTDDFRCLDKAAL----ELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIML 388
KI HTD ++ LDKAA+ E K + +PWKLCTVTQVEEVKTL+R+ PI A I+
Sbjct: 316 RKIQHTDGYKFLDKAAVISEYESKSGAFS-NPWKLCTVTQVEEVKTLIRMFPIWASGIVY 374
Query: 389 NVILTEFLTLSVQQAYTMN 407
+V+ ++ TL VQQ +MN
Sbjct: 375 SVLYSQISTLFVQQGRSMN 393
|
|
| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 151/367 (41%), Positives = 219/367 (59%)
Query: 52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
V+ G+P AD SKTGGWI A I G E+ ER++ G++VN+VT++ MH + S+N V
Sbjct: 13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71
Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
+F+G S +LGGFLAD++LGR+ TI IF+TI G TG AT K+ C
Sbjct: 72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALG-TGALAVAT-KLPELRPPTCHH 129
Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
+C PA ++QM LY LY+ G G++ +S FG+DQFD++ K H+ FF
Sbjct: 130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185
Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
N F+ +++G ++A T++VY+Q E G A+G ++M I+ ++F GT YR++ GS
Sbjct: 186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245
Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
P+ ++ QV+ AAFRKR S ++ LYE I+ I HTD F LDKAA+
Sbjct: 246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAIVA 298
Query: 352 KED-------VINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY 404
+ D V P+PWKL +VT+VEEVK +VRL+PI A TI+ + +T SV+QA
Sbjct: 299 EGDFEQTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAS 358
Query: 405 TMNTHMG 411
TM ++G
Sbjct: 359 TMRRNIG 365
|
|
| TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.3e-76, Sum P(3) = 1.3e-76
Identities = 131/367 (35%), Positives = 205/367 (55%)
Query: 41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
+G YT T V++ G P+ S G W A F+ E+ ERMAY+G+S N+ +M +
Sbjct: 6 VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63
Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
H+ SSN V N++G S + +LG ++ DA LGRY T I IY +G+ +TL T+
Sbjct: 64 HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123
Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
P + C + + +CE A Q+ + LY G G +P +S+ GADQFD
Sbjct: 124 GIKPPE--CSTTN--VENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179
Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
KT FFN++ S+ G + A T++VY+Q GW +G + + IS +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239
Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
P YRH+LP GSP T++A+V+VA+FRK +A + ++ +E+P KG+ I T
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPMTH-DITSFHELPSLEYERKGAFPIHPTPS 298
Query: 341 FRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSV 400
R LD+A+L+ + W LCT T+VEE K ++R++P+ T + +++L + TL V
Sbjct: 299 LRFLDRASLKTGTN----HKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFV 354
Query: 401 QQAYTMN 407
+Q T++
Sbjct: 355 KQGTTLD 361
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.8e-75, Sum P(3) = 1.8e-75
Identities = 138/361 (38%), Positives = 202/361 (55%)
Query: 54 VHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNN 113
+HG+P + K GG I FIF NE+ E++A G NM++++ +H ++N + N
Sbjct: 16 LHGRP--NRPK-GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTN 72
Query: 114 FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173
F G S + +LG F+AD++ GR+WTI + IY G+T +T+ A + P + +
Sbjct: 73 FAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV- 131
Query: 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233
C A + Q+ LY L + G+ GIRPCV +FGADQFDE + T +FN+
Sbjct: 132 -----CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNW 186
Query: 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
+Y + ++A T++V+IQ GWG G +AM +S + F G LYRH +P GSP
Sbjct: 187 YYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPF 246
Query: 294 TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKE 353
TR+ QV VAAFRKR S + LY + I GK+ HT LDKAA+ +E
Sbjct: 247 TRLIQVGVAAFRKRKLRMVSDPSL-LYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEE 305
Query: 354 DVINPS--P--WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 409
D + P P W+L TV +VEE+K+++R+ PI A I+L + T S+QQA TMN H
Sbjct: 306 DNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRH 365
Query: 410 M 410
+
Sbjct: 366 L 366
|
|
| TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 133/353 (37%), Positives = 203/353 (57%)
Query: 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
++TG W AALFI G E +ER++YFG+S N+V ++ ++H+ + N + G++
Sbjct: 36 AQTGAWRAALFIIGIEFSERLSYFGISTNLVVYLTTILHQDLKMAVKNTNYWSGVTTLMP 95
Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC-EP 181
+LGGF+ADAYLGRY T+ + TTIYL GL I L T+ F+P C C EP
Sbjct: 96 LLGGFVADAYLGRYGTVLLATTIYLMGL--ILL--TLSWFIPGLKACHE-----DMCVEP 146
Query: 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241
K+ ++ + + +Y+ G G +P + SFGADQF++ + + +FN++ + G
Sbjct: 147 RKAHEIAF-FIAIYLISIGTGGHKPSLESFGADQFEDGHPEERKMKMSYFNWWNAGLCAG 205
Query: 242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLV 301
+ A T++VYI+ GWG A L I M S +F IG P YR+R P GSPLT + QV V
Sbjct: 206 ILTAVTVIVYIEDRIGWGVASIILTIVMATSFFIFRIGKPFYRYRAPSGSPLTPMLQVFV 265
Query: 302 AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL--ELKEDVI--N 357
AA KR+ S + L+E+ + KG ++ + + + LDKAA+ + E+
Sbjct: 266 AAIAKRNLPCPSDSSL-LHELTNEEYT-KGR-LLSSSKNLKFLDKAAVIEDRNENTKAEK 322
Query: 358 PSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
SPW+L TVT+VEEVK L+ ++PI T+ V T+ TL ++QA M+ H+
Sbjct: 323 QSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHI 375
|
|
| TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 632 (227.5 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
Identities = 144/363 (39%), Positives = 209/363 (57%)
Query: 56 GKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL 115
G+P AD SKTGGW +A I E ER+ G+ VN+VT++ MH A ++N V NFL
Sbjct: 20 GRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFL 78
Query: 116 GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175
G S +LGGF+AD +LGRY TIAIF I G++ +TL + P + N S
Sbjct: 79 GTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH- 137
Query: 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235
CE A Q+ LY LY+T G G++ VS FG+DQFDE ++ + FFN F+
Sbjct: 138 ---CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194
Query: 236 LSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
+ VG+++A T++VY+Q + G WG A AI + +S +F GT YR + GSP+
Sbjct: 195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIGSPM 252
Query: 294 TRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALEL 351
T+VA V+VAA+R R + S L + ++ ++KG K+ HT+ FR LDKAA+
Sbjct: 253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRD 312
Query: 352 KEDVINPS---PWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNT 408
+E + + W L T+T VEEVK +VR++PI A I+ + + TLSV Q+ T++
Sbjct: 313 QEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLDR 372
Query: 409 HMG 411
+G
Sbjct: 373 SIG 375
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYR6 | PTR49_ARATH | No assigned EC number | 0.6824 | 0.9592 | 0.8301 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 540 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 5e-43 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-18 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-07 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 2e-06 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-05 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 5e-43
Identities = 81/305 (26%), Positives = 130/305 (42%), Gaps = 38/305 (12%)
Query: 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 195
+ TI + + IY G +TL A P Q + Y LY
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40
Query: 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255
+ G GI+P VS+FGADQFDE + D FF++FY S+ G+++A + Y+Q
Sbjct: 41 LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97
Query: 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 313
G+ FG A+ M ++ ++F +G+ Y+ + P GGSP T +A ++ AA + R
Sbjct: 98 VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157
Query: 314 SELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVK 373
LY K++ S HT A + + V ++
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHT------RVAVIFIPLPKFWA---LFDQQGSVWLLQ 207
Query: 374 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMG--HPRGASQLQRVGIGLAVSIL 431
++ ++PI A I+ + + T+ TL V+Q TM+ + + Q LAV IL
Sbjct: 208 AILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNP-LAVLIL 266
Query: 432 SVIWA 436
I
Sbjct: 267 LPILD 271
|
The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 4e-18
Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 34/210 (16%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLA 129
IF E+ ER +Y+G+ ++ +++Y + ++ + + + + ++GG+LA
Sbjct: 26 IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85
Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
D LG TI + + G + + +
Sbjct: 86 DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-------------------------- 119
Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
LY L + G +P +SS + + + D F FY+ + +G+++A +
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175
Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
+ + +GW FG A+ M I ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205
|
Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 34/227 (14%)
Query: 92 MVTFMF-YVMHKSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147
M T + Y+++ + A N F + + ++G +AD++LG++ TI + +Y+
Sbjct: 6 MKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYV 65
Query: 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207
G +L A + P D L+G L + G GI+PC
Sbjct: 66 VGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGIKPC 105
Query: 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHGWGS 260
VS+FG DQF+ER + RFF+FFY ++ G++ + + V + +
Sbjct: 106 VSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162
Query: 261 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307
AFG I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 36/211 (17%)
Query: 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA 131
L +F + LS + + S + + V+ F S+L G+L+D
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
+ GR + + ++ G + A S +L +
Sbjct: 61 F-GRRRVLLLGLLLFALGSLLLAF--------------------------ASSLWLLLVG 93
Query: 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251
L G G + P ++ A+ F + R F +GA++ L
Sbjct: 94 RFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGL 145
Query: 252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
+ GW F LAI + +L L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLRL 176
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 39/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADA 131
+F E+ ER +Y+G+ + ++ F+ + + + + +G + D
Sbjct: 15 LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74
Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
G T+ L GI L +LG A S +Y
Sbjct: 75 VWGTKKTMV---------LGGIVL-------------------MLGHFMLAMS---IYPD 103
Query: 192 TVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
+ Y G G+ + SS ++ + D F FY+S+ +G+ ++ L
Sbjct: 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLL 160
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
I +G+ F A+ M I + FF G + R
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)
Query: 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142
+ L + ++ + S + + F + L G L+D + GR + I
Sbjct: 10 LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68
Query: 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 202
++ GL + + S +L + VL G G
Sbjct: 69 LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100
Query: 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262
+ P ++ AD F R +GA + L + GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305
LAI ++ +L + P P LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 540 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.97 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.97 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.97 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.96 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.96 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.94 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.91 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.91 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.91 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.9 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.89 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.88 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.88 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.87 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.86 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.86 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.86 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.86 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.86 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.85 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.85 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.85 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.85 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.84 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.84 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.84 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.84 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.84 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.84 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.83 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.83 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.83 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.83 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.83 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.83 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.83 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.82 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.82 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.82 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.81 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.81 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.81 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.81 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.81 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.81 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.8 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.8 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.8 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.8 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.8 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.8 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.8 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.79 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.79 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.79 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.78 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.78 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.78 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.78 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.78 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.77 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.77 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.76 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.76 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.76 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.75 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.74 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.74 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.74 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.74 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.73 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.72 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.71 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.71 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.7 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.7 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.69 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.69 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.68 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.68 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.67 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.67 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.65 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.64 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.64 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.63 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.62 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.62 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.62 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.62 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.62 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.62 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.61 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.61 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.57 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.54 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.51 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.51 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.48 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.48 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.48 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.48 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.48 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.47 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.45 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.44 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.43 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.41 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.4 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.4 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.4 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.39 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.39 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.39 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.39 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.38 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.38 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.36 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.36 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.36 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.35 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.34 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.34 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.33 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.33 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.33 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.33 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.32 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.32 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.32 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.3 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.3 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.29 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.29 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.29 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.29 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.29 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.28 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.27 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.27 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.26 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.25 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.25 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.24 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.22 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.22 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.2 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.19 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.19 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.17 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.16 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.15 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.14 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.13 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.11 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.11 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.1 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.1 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.08 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.07 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.07 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.06 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.06 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.05 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.05 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.04 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.03 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.03 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.03 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.02 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.01 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.01 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.0 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.99 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.98 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.94 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.92 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.9 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.89 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.87 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.85 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.85 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.83 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.83 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.82 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.82 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.8 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.79 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.79 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.79 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.79 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.76 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.73 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.71 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.71 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.71 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.7 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.67 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.66 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.64 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.64 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.58 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.55 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.55 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.51 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.51 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.49 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.48 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.48 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.46 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.38 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.36 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.3 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.29 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.24 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.19 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.18 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.18 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.15 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.03 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.03 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.96 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.95 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.93 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.9 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.87 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.86 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.79 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.71 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.56 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.5 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.43 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.38 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.32 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.28 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.23 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.21 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.12 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.06 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.01 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.0 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.98 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.88 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.68 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 96.49 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.21 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.16 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.77 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.73 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 95.71 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.24 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 95.12 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 94.99 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 94.1 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 93.63 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 93.44 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 92.32 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 91.77 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 89.93 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 88.19 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 87.23 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 86.49 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 86.06 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 86.04 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 85.45 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=387.72 Aligned_cols=460 Identities=45% Similarity=0.744 Sum_probs=406.0
Q ss_pred CCccccCCCCCcccc---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHH
Q 009195 49 TTPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLG 125 (540)
Q Consensus 49 ~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 125 (540)
.+..+++++|. .+. .++.|+.+..++..+.++++++|++..++..|++..+|.+...+...++.|.+.....++++
T Consensus 15 ~~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g 93 (571)
T KOG1237|consen 15 FTSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLG 93 (571)
T ss_pred cceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHH
Confidence 35566666666 554 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccc
Q 009195 126 GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205 (540)
Q Consensus 126 G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 205 (540)
++++|.|+||++++.++.+++.+|..++.+++..+.+.|. .| ..+.....|+.+.+.....++.++.+.++|.|+..
T Consensus 94 ~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r 170 (571)
T KOG1237|consen 94 AFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR 170 (571)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence 9999999999999999999999999999999888888875 33 00012336889999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcccccc
Q 009195 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (540)
Q Consensus 206 ~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~ 285 (540)
++..++.+|||++..+.++..+.++|+|+|+..++|.+++..+..|++++.||.++|.++.+++++++++++...+.+++
T Consensus 171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~ 250 (571)
T KOG1237|consen 171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRY 250 (571)
T ss_pred CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEe
Confidence 99999999999987777777788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCCchhhHHHhhhhccc---cCCCCCCc
Q 009195 286 RLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKED---VINPSPWK 362 (540)
Q Consensus 286 ~~~~~~~~~~~~~v~~~~~k~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~ 362 (540)
.++.++++.++.+|++.+.++++...+.++.. + +.........++.++++++|+++.+..++ ....+||+
T Consensus 251 ~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~------~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~ 323 (571)
T KOG1237|consen 251 KKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-L------YYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWR 323 (571)
T ss_pred eCCCCCchhHHHHHHHHHHHHHhccCCCcchh-c------cccccccccccCCcccchhhHhhccCCcccccccccCCcc
Confidence 99999999999999999999999888876544 3 11122223334466788999988776542 34578999
Q ss_pred ccchhhHHHHHHHHhhhhhhhhhHHHHHHhhhhhhHHHHHHhhhcccc--------------------------------
Q 009195 363 LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM-------------------------------- 410 (540)
Q Consensus 363 ~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-------------------------------- 410 (540)
.|+.+++|++|+++|.+|+|...++++..+.|+.+.++.|+.+||+++
T Consensus 324 lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP 403 (571)
T KOG1237|consen 324 LCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVP 403 (571)
T ss_pred CCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehh
Confidence 999999999999999999999999999999999999999999999876
Q ss_pred ------CCCCCCChhHHHHHHHHHHHHHHHHh------------------------------------------------
Q 009195 411 ------GHPRGASQLQRVGIGLAVSILSVIWA------------------------------------------------ 436 (540)
Q Consensus 411 ------~~~~~~~~~~~~~~g~~~~~~~~~~~------------------------------------------------ 436 (540)
+++.+++.++++++|+++.++++..+
T Consensus 404 ~~~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFf 483 (571)
T KOG1237|consen 404 FARKLTGNPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFF 483 (571)
T ss_pred hhhhhcCCCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 22346789999999999999997776
Q ss_pred ---ccchhHHHHHHHHHHHhhHHHHHHHHHHhhhccccCCCCCCCCCccc-CCCcCcchhHHHHHHHHHHHHHHHHHHhh
Q 009195 437 ---APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFCAFLYS 512 (540)
Q Consensus 437 ---~P~~~rg~~~g~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~a~~~~~~~i~~~~~ 512 (540)
+|++||+.+++++.+..++|++++..++..+...++ . ..+|++ +|+|.++++++||++++...++.+.+.++
T Consensus 484 Y~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~ 559 (571)
T KOG1237|consen 484 YSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLIC 559 (571)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEE
Confidence 999999999999999999999999999999988775 3 568998 99999999999999999999999999999
Q ss_pred hhccccccccc
Q 009195 513 AYRYKYRSEQK 523 (540)
Q Consensus 513 ~~~~~~~~~~~ 523 (540)
.++|+++..++
T Consensus 560 ~~~y~~~~~~~ 570 (571)
T KOG1237|consen 560 AKRYDYKDDKD 570 (571)
T ss_pred EEeeeeccccC
Confidence 99999986654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=266.08 Aligned_cols=386 Identities=18% Similarity=0.243 Sum_probs=292.1
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH
Q 009195 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138 (540)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg----~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~ 138 (540)
...+++|.++.++..++.|+++||++...+..|+..+++ ++++++.-..+.|..-.++.+++|||++||++|+|++
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 445688999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 009195 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (540)
Q Consensus 139 i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~ 218 (540)
+..+.+++.+|.+.++.+.. .....++++..++++|.|.+.+++..+++|++|+
T Consensus 95 I~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~ 148 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK 148 (498)
T ss_pred HHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCC
Confidence 99999999999999987520 1356788999999999999999999999999999
Q ss_pred CCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcccccccCC--CCCchhH-
Q 009195 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP--GGSPLTR- 295 (540)
Q Consensus 219 ~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~- 295 (540)
++++ |..+++++|++.|+|+.++|++.+++.+++||..+|.++++.+.++++.++++++.+..... ..+++..
T Consensus 149 ~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~ 224 (498)
T COG3104 149 DDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFN 224 (498)
T ss_pred CCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhh
Confidence 9876 99999999999999999999999999999999999999999999999999999887765532 2122111
Q ss_pred -----HHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCCchh-hHH----HhhhhccccCCCCCCcccc
Q 009195 296 -----VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRC-LDK----AALELKEDVINPSPWKLCT 365 (540)
Q Consensus 296 -----~~~v~~~~~k~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~----~~~~~~~~~~~~~~~~~~~ 365 (540)
...++...... + ..+ +.. .+..+. +.. .+..+-.+ .-.| .
T Consensus 225 ~~~~~~~~~~~~~~~~-----~--~~~-~l~----------------~~~~~~~~~~~~i~~~~~~~~~---~~~~---~ 274 (498)
T COG3104 225 FLLPVLGGLVVMILAA-----L--LTL-LLN----------------QNTFSGVLLVISILIAIIYFAE---AFRS---P 274 (498)
T ss_pred hhhhhHHHHHHHHHHH-----H--HHH-HHH----------------HHHHHHHHHHHHHHHHHHHHHH---Hhcc---C
Confidence 11111111100 0 000 000 000000 000 00000000 0011 1
Q ss_pred hhhHHHHHHHHhhhhhhhhhHHHHHHhhhhhhHHHHHHhhh-ccc-----c----------------------------C
Q 009195 366 VTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTM-NTH-----M----------------------------G 411 (540)
Q Consensus 366 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~-----~----------------------------~ 411 (540)
+.. +++|+++..+++++...+||..+.|+++.+..++..+ +++ + +
T Consensus 275 ~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~ 353 (498)
T COG3104 275 KVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGR 353 (498)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhc
Confidence 223 6789999999999999999999999999888776543 343 1 2
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHh--------------------------------------------ccchhHHHHHH
Q 009195 412 HPRGASQLQRVGIGLAVSILSVIWA--------------------------------------------APDAMKSIGSA 447 (540)
Q Consensus 412 ~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------------------------~P~~~rg~~~g 447 (540)
++..++.-.|++.|++++.++++.. +|.++.|..||
T Consensus 354 ~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma 433 (498)
T COG3104 354 GNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMA 433 (498)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHH
Confidence 3345677778899988888887765 99999999999
Q ss_pred HHHHHhhHHHHHHHHHHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 009195 448 YAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE 521 (540)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~i~~~~~~~~~~~~~~ 521 (540)
.+.+....++.++..+.+.... ++ . -.+......+|+..+.+.++..+..+.+.++.++..+
T Consensus 434 ~wfLt~a~~~~l~g~va~~~~~-~~--~---------~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~ 495 (498)
T COG3104 434 MWFLTVAAGQTLGGQVAGLTAV-TD--P---------AYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMK 495 (498)
T ss_pred HHHHHHHHHHHhhceecccccc-cc--h---------hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhc
Confidence 9999999999988888774221 11 0 0111124467888888888888888888887766543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=257.23 Aligned_cols=380 Identities=12% Similarity=0.166 Sum_probs=267.2
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 009195 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (540)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~ 143 (540)
.+++|+.++.+++.++++++++|++..+++.|+++++|++.+++.++.+.+....++.++++|+++||++||||+++++.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999459999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 009195 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (540)
Q Consensus 144 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~ 223 (540)
+++.++.++++++.. ....++++|+++|+|.|...++..++++|++|+++++
T Consensus 89 ~~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~- 140 (489)
T PRK10207 89 IVLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR- 140 (489)
T ss_pred HHHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh-
Confidence 999999999887521 1234668899999999999999999999999987522
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCchhHHHHHHH
Q 009195 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTRVAQVLV 301 (540)
Q Consensus 224 ~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~ 301 (540)
|++.++++|++.|+|+.+||.+++++.++.|||+.|++..+.++++++.+...++.+++. ++++++. +..+.+.
T Consensus 141 ---~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l 216 (489)
T PRK10207 141 ---LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLL 216 (489)
T ss_pred ---hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHH
Confidence 688999999999999999999999999999999999998776666666666655444332 2222211 1111100
Q ss_pred ---------HHHHhhccccCCcccccccccCCCcccccCCcccccCCCchh-hHHHh------hhhccccCCCCCCcccc
Q 009195 302 ---------AAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRC-LDKAA------LELKEDVINPSPWKLCT 365 (540)
Q Consensus 302 ---------~~~k~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~------~~~~~~~~~~~~~~~~~ 365 (540)
..... ..... ++ ... +.... ..... ..
T Consensus 217 ~~~~~~~~~~~~~~-~~~~~-~~-------------------------~~~~~~~~~~i~~~~f~~~~----------~~ 259 (489)
T PRK10207 217 VLLGSVVMIFVCAW-LMHNV-EV-------------------------ANLVLIVLSIVVTIIFFREA----------FK 259 (489)
T ss_pred HHHHHHHHHHHHHH-HHhhh-hH-------------------------HHHHHHHHHHHHHHHHHHHH----------hc
Confidence 00000 00000 00 000 00000 00000 00
Q ss_pred hhhHHHHHHHHhhhhhhhhhHHHHHHhhhhhhHHHHHHh-hhcccc---------------------------------C
Q 009195 366 VTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHM---------------------------------G 411 (540)
Q Consensus 366 ~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~---------------------------------~ 411 (540)
.++ .++++.+....+++...++|..+.|..+.+..+.. .++... +
T Consensus 260 ~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~ 338 (489)
T PRK10207 260 LDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGS 338 (489)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhh
Confidence 011 23455555666677788888888887665544432 222211 3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHh--------------------------------------------ccchhHHHHHH
Q 009195 412 HPRGASQLQRVGIGLAVSILSVIWA--------------------------------------------APDAMKSIGSA 447 (540)
Q Consensus 412 ~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------------------------~P~~~rg~~~g 447 (540)
++..++...++.+|+++.+++++.+ +|++++|.++|
T Consensus 339 r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g 418 (489)
T PRK10207 339 KGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILG 418 (489)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHH
Confidence 3445677788888877776665310 99999999999
Q ss_pred HHHHHhhHHHHHHHHHHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 009195 448 YAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE 521 (540)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~i~~~~~~~~~~~~~~ 521 (540)
++++...+|+.++..+....... . ...++ . ..+.++.++|..++..+++..++++++.++.++..+
T Consensus 419 ~~~l~~~ig~~lg~~l~~~~~~~-~--~~~~~-~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~ 484 (489)
T PRK10207 419 MWFLTQAAAFLLGGYVATFTAVP-D--NITDP-L----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMIN 484 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-c--ccccc-h----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999888655320 0 00000 0 012236678888888888888888888887777643
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-27 Score=252.26 Aligned_cols=375 Identities=14% Similarity=0.150 Sum_probs=264.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 009195 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (540)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i 141 (540)
..++++.++.+++.++++++++|++.++++.|++++ +|++..+++++.+.+.++..++++++|+++||++|||+++.+
T Consensus 5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 346777899999999999999999999999999988 999999999999999999999999999999994499999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 009195 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (540)
Q Consensus 142 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~ 221 (540)
+.++..++.++++++ .+...+++++++.|+|.|...++..++++|++|++++
T Consensus 85 ~~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~ 136 (475)
T TIGR00924 85 GGIVLMLGHFMLAMS----------------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM 136 (475)
T ss_pred HHHHHHHHHHHHHhc----------------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc
Confidence 999999998888764 3456677899999999999999999999999987542
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHH----
Q 009195 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA---- 297 (540)
Q Consensus 222 ~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 297 (540)
+ .|+++++++|++.|+|+.+||.+++++.+++||++.|++.++.++++++.+.+.++.+++.++++++..+..
T Consensus 137 ~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (475)
T TIGR00924 137 P---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYG 213 (475)
T ss_pred c---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhH
Confidence 1 288899999999999999999999999999999999999887777776666666655543332222111100
Q ss_pred H---H----HHHHHHhhccccCCcccccccccCCCcccccCCcccccCCCchhhH----HHhhhhccccCCCCCCcccch
Q 009195 298 Q---V----LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD----KAALELKEDVINPSPWKLCTV 366 (540)
Q Consensus 298 ~---v----~~~~~k~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~ 366 (540)
+ . +....+.... ... ....+.+. .....+.... ..+|.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~-~~~------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~----- 262 (475)
T TIGR00924 214 KLLLALLAALALVFFCAWL-MHH------------------------VVIANILLMTVTLAVIIFFFRL-AFKPR----- 262 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hhc------------------------cHHHHHHHHHHHHHHHHHHHHH-HHhcc-----
Confidence 0 0 0000000000 000 00000000 0000000000 00010
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHHHHhhhhhhHHHHH-Hhhhcccc---------------------------------CC
Q 009195 367 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQ-AYTMNTHM---------------------------------GH 412 (540)
Q Consensus 367 ~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~---------------------------------~~ 412 (540)
.+.+++++....+++++...++|..+.|+.+.+..+ ..++|..+ ++
T Consensus 263 ~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~ 342 (475)
T TIGR00924 263 LDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK 342 (475)
T ss_pred CCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 111233445567888888899999999988865432 23334321 22
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHh-------------------------------------------ccchhHHHHHHHH
Q 009195 413 PRGASQLQRVGIGLAVSILSVIWA-------------------------------------------APDAMKSIGSAYA 449 (540)
Q Consensus 413 ~~~~~~~~~~~~g~~~~~~~~~~~-------------------------------------------~P~~~rg~~~g~~ 449 (540)
...++...|+++|+++.+++++.+ +|+++||+++|++
T Consensus 343 ~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~ 422 (475)
T TIGR00924 343 GKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMW 422 (475)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 234566677888877776664331 8999999999999
Q ss_pred HHHhhHHHHHHHHHHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 009195 450 ALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 518 (540)
Q Consensus 450 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~i~~~~~~~~~~~ 518 (540)
.+...+|+++++.+.....+..+ ...+|...+.++++..++++++.++.++
T Consensus 423 ~l~~~~g~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 423 FLAQAMGSLLGGYLATFGAVPQG------------------VTGVFGKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988876544222 2456777777777777777777766554
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-26 Score=242.45 Aligned_cols=396 Identities=14% Similarity=0.158 Sum_probs=265.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 009195 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (540)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l 145 (540)
+|++.++.+++.++.+++++|++..+++.|+++.+|++..+++.+.+.+....+++++++|+++||++||||+++++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 009195 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (540)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (540)
..++.+++.... .+...++++..+.++|.|...++..++++|++|+++++
T Consensus 86 ~~lg~lll~~~~---------------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~--- 135 (493)
T PRK15462 86 MAIGHVVLGASE---------------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR--- 135 (493)
T ss_pred HHHHHHHHHHhh---------------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc---
Confidence 999887665421 11233455556667888888899999999999986432
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcccccccCC-CCCchhH--HHHHHHH
Q 009195 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR--VAQVLVA 302 (540)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~v~~~ 302 (540)
|.++++++|...|+|+.++|.+++++.+++||+++|.++++.++++++.++..++.+.+... ..++.++ .......
T Consensus 136 -R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 214 (493)
T PRK15462 136 -RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWG 214 (493)
T ss_pred -ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHH
Confidence 99999999999999999999999999999999999999888777777776665554433211 1111110 0000000
Q ss_pred HHHhhccccCCcccccccccCCCcccccCCcccccCCCchhh-HHHh---hhhccccCCCCCCcccchhhHHHHHHHHhh
Q 009195 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DKAA---LELKEDVINPSPWKLCTVTQVEEVKTLVRL 378 (540)
Q Consensus 303 ~~k~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~ 378 (540)
..---. .. .+ . +... .+... ....+ -... ...-. +........+++|++...
T Consensus 215 ~~~~~~--~~-~~-~-~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~er~r~~~~ 270 (493)
T PRK15462 215 WLLVLL--VA-TP-A-LITV-----------LFWKE-WSVYALIVATIIGLGVLA-------KIYRKAENQKQRKELGLI 270 (493)
T ss_pred HHHHHH--HH-HH-H-HHHH-----------HHHHH-HHHHHHHHHHHHHHHHHH-------HHHHhcCCHHHHhhHHHH
Confidence 000000 00 00 0 0000 00000 00000 0000 00000 000001124678899999
Q ss_pred hhhhhhhHHHHHHhhhhhhHHHHHH-hhhcccc---------------------------------CCCCCCChhHHHHH
Q 009195 379 VPIPACTIMLNVILTEFLTLSVQQA-YTMNTHM---------------------------------GHPRGASQLQRVGI 424 (540)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~---------------------------------~~~~~~~~~~~~~~ 424 (540)
+++++...+||..+.|.++.+.... .++|+++ ++++.++...|++.
T Consensus 271 ~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~ 350 (493)
T PRK15462 271 VTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFAL 350 (493)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 9999999999999999998766554 3455553 23446778888999
Q ss_pred HHHHHHHHHHHh-------------------------------------------ccchhHHHHHHHHHHHh-hHHHHHH
Q 009195 425 GLAVSILSVIWA-------------------------------------------APDAMKSIGSAYAALAG-GLGCFAA 460 (540)
Q Consensus 425 g~~~~~~~~~~~-------------------------------------------~P~~~rg~~~g~~~~~~-~~~~~~~ 460 (540)
|+++.++++++. +|+++||..||++++.. .+++.++
T Consensus 351 g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~ 430 (493)
T PRK15462 351 GLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLA 430 (493)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988887654 99999999999998754 6888888
Q ss_pred HHHHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHH--HHHHHhhhhcccccccc
Q 009195 461 SILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN--FCAFLYSAYRYKYRSEQ 522 (540)
Q Consensus 461 ~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~--~i~~~~~~~~~~~~~~~ 522 (540)
..+.........+|... + .+ ...++..+|...+.++++. ++.+.+..+..|.|++.
T Consensus 431 g~~~~~~~~~~~~~~~~-~----~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (493)
T PRK15462 431 GVIADQTSQASFDASGA-I----NY-SINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRA 488 (493)
T ss_pred HHHHHHhccccCCcccc-c----cc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 77777653211100000 0 00 0113555677777666554 45555556666666543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-25 Score=242.49 Aligned_cols=388 Identities=16% Similarity=0.219 Sum_probs=263.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 009195 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (540)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l 145 (540)
++++.++.+++.++++++++|++..+++.|+++++|++.++++++.+.+.......++++|+++||++|||+++.++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999998888888777777889999999945999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 009195 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (540)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (540)
..++.++++++. .+...+++++++.|+|.|...++..++++|++|+++++
T Consensus 98 ~~ig~~l~~~~~---------------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~--- 147 (500)
T PRK09584 98 LAIGYALVAWSG---------------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR--- 147 (500)
T ss_pred HHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh---
Confidence 999988877641 13455678889999999999999999999999876522
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCchh--H----HH
Q 009195 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLT--R----VA 297 (540)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~----~~ 297 (540)
|.++++++|++.++|+.++|.+++++.+++||++.|++.++..+++++.+++.++.+++. +++..+.. . ..
T Consensus 148 -~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (500)
T PRK09584 148 -LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIV 226 (500)
T ss_pred -hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHH
Confidence 567889999999999999999999999999999999998877766666555554433322 12211111 1 01
Q ss_pred HHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCCchhhHHHhhhhccccCCCCCCc-ccchhhHHHHHHHH
Q 009195 298 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEVKTLV 376 (540)
Q Consensus 298 ~v~~~~~k~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~l~ 376 (540)
.+........ + +...+ + .. + ..+-..+...... .+. .+. .+..++++++
T Consensus 227 ~~~~~~~~~~---------~-~~~~~--~--------~~-~---~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~ 276 (500)
T PRK09584 227 GVVALIAIAT---------W-LLHNQ--E--------IA-R---MALGVVALGIVVI-----FGKEAFA-MKGAARRKMI 276 (500)
T ss_pred HHHHHHHHHH---------H-HHhcc--h--------HH-H---HHHHHHHHHHHHH-----HHHHHhh-cCHHHHHHHH
Confidence 1111111000 0 00000 0 00 0 0000000000000 000 001 1223456666
Q ss_pred hhhhhhhhhHHHHHHhhhhhhHHHHHHhh-hcccc------------------------------CCCCCCChhHHHHHH
Q 009195 377 RLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM------------------------------GHPRGASQLQRVGIG 425 (540)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~------------------------------~~~~~~~~~~~~~~g 425 (540)
..+++++...++|..+.|+++.+..++.+ ++... +.+.+.....++.+|
T Consensus 277 ~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G 356 (500)
T PRK09584 277 VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIG 356 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHH
Confidence 66778888889999999999987765533 32211 333345567778888
Q ss_pred HHHHHHHHHHh-------------------------------------------ccchhHHHHHHHHHHHhhHHHHHHHH
Q 009195 426 LAVSILSVIWA-------------------------------------------APDAMKSIGSAYAALAGGLGCFAASI 462 (540)
Q Consensus 426 ~~~~~~~~~~~-------------------------------------------~P~~~rg~~~g~~~~~~~~~~~~~~~ 462 (540)
+++.+++++.. +|+++||+++|++++...+++.++..
T Consensus 357 ~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~ 436 (500)
T PRK09584 357 MVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGY 436 (500)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877776551 99999999999999999999988888
Q ss_pred HHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 009195 463 LNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQ 522 (540)
Q Consensus 463 l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~i~~~~~~~~~~~~~~~ 522 (540)
+...+.. |....... ...+.+..+|..++.++++..++++...++.++..+.
T Consensus 437 ~~~~~~~----~~~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~ 488 (500)
T PRK09584 437 VANLMAV----PDNVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQD 488 (500)
T ss_pred HHHHhcc----ccccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8754321 00000000 1112356788888888877777777777877776443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=237.28 Aligned_cols=267 Identities=25% Similarity=0.455 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009195 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (540)
Q Consensus 83 ~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~ 162 (540)
++||++.+.+..|+++.+|++.+.+..+...+....++.++++|+++|+++||++++.++.+++.+|.+++++.+.....
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999988875321110
Q ss_pred CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHH
Q 009195 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (540)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~ 242 (540)
.+ ......+++..+.++|.|++.++..++.+|++++++. ..|.++++++|+++|+|+
T Consensus 81 ~~--------------------~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGS 137 (654)
T TIGR00926 81 HP--------------------LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGS 137 (654)
T ss_pred cc--------------------hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHH
Confidence 00 2334567888999999999999999999999986432 238999999999999999
Q ss_pred HHHHHHHHHhhhcc-------chHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCCcc
Q 009195 243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSE 315 (540)
Q Consensus 243 ~i~p~i~~~l~~~~-------gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~~~~s~ 315 (540)
.+++++.+++.+.+ +|..+|.+++++++++++++...++.+++.++.++++.+.+++++.+.|++.....+.
T Consensus 138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~- 216 (654)
T TIGR00926 138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH- 216 (654)
T ss_pred HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-
Confidence 99999999998543 6999999999999999999998888888888888888888888888877643211110
Q ss_pred cccccccCCCcccccCCcccccCCCchhhHHHhhhhccccCCCCCCcccchhhHHHHHHHHhhhhhhhhhHHHHHHhhhh
Q 009195 316 LIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEF 395 (540)
Q Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ 395 (540)
...+++|.+.... ..++++++|++++.+++++...++|..+.|+
T Consensus 217 -----------------------~~~~~ld~a~~~~-------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~ 260 (654)
T TIGR00926 217 -----------------------WPLHWLDYAKDKH-------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQ 260 (654)
T ss_pred -----------------------cchhHHHHhcccc-------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0123444433221 1345788999999999999999999999999
Q ss_pred hhHHHHHHhhhccc
Q 009195 396 LTLSVQQAYTMNTH 409 (540)
Q Consensus 396 ~s~~~~~~~~~~~~ 409 (540)
.+.+..|+..++.+
T Consensus 261 ~s~~~~qa~~m~~~ 274 (654)
T TIGR00926 261 GSRWTLQATRMDGD 274 (654)
T ss_pred hhHHHHHHHHhcCc
Confidence 99999998888754
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=220.14 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=135.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i 139 (540)
+.+++.+..+.+..+...+....+....+ .+..+ .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~ 89 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVY 89 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHH
Confidence 34445555556666666555543333333 33332 234566778999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 009195 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (540)
Q Consensus 140 ~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~ 219 (540)
.++.++..++.++++++... .+ ..+...++++|++.|++.|+..+..+.+++|.+|++
T Consensus 90 ~~~~~~~~v~~~~~~~~~~~---~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~ 147 (502)
T TIGR00887 90 GMELIIMIIATVASGLSPGS---SP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK 147 (502)
T ss_pred HHHHHHHHHHHHHHHHccCc---cc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh
Confidence 99999999988877764110 00 023678999999999999999999999999999999
Q ss_pred CchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh-----------------------ccchHHHHHHHHHHHHHHHHH
Q 009195 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 220 ~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~-----------------------~~gw~~~f~i~~i~~~~~~~~ 275 (540)
. |+++.++++....+|..+++.+..++.. ..+||+.|.+.++..++.++.
T Consensus 148 ~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~ 220 (502)
T TIGR00887 148 W------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF 220 (502)
T ss_pred h------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999988888765432 237999998777665554444
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=226.40 Aligned_cols=176 Identities=14% Similarity=0.054 Sum_probs=139.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
+|..+..+.+..++..+.. .+...+.+++..++|++..+.+++.+++.++.+++.+++|+++||+ |||++++++.++.
T Consensus 165 ~~~l~~i~~l~~~~~g~d~-~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~ 242 (742)
T TIGR01299 165 QWALFFVLGLALMADGVEV-FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 3433333344334333333 2344556678889999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.++.++++++ .+...++++|++.|++.|+..+...++++|.+|++.
T Consensus 243 ~i~~ll~afa----------------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------ 288 (742)
T TIGR01299 243 GFFAFFSSFV----------------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------ 288 (742)
T ss_pred HHHHHHHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------
Confidence 9888887765 457888999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhc-------------cchHHHHHHHHHHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-------------HGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~~-------------~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
|++.+++......+|.++++.++.++... .+||+.+++.++..++++++.++
T Consensus 289 Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 289 RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888899999998877665432 35898888877766555544333
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=218.07 Aligned_cols=338 Identities=14% Similarity=0.104 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhH
Q 009195 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (540)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (540)
+.+++++.+|.++|+++.|+++||+ |||..+.++.++.+++.+++.++... ...
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~ 116 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF 116 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence 6788899999999999999999998 99999999999999888888776331 467
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHH-HHhh-hccchHHHHHHH
Q 009195 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-VYIQ-MEHGWGSAFGAL 265 (540)
Q Consensus 188 ~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~-~~l~-~~~gw~~~f~i~ 265 (540)
.++.++|++.|+..|......+.++.|..|++- ||..-.+..++.++|-.++..++ ..+. ....|++.+.+.
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 899999999999999999999999999999999 99999999999999999996655 3333 445699999888
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCCcccccccc-cCCCcccccCCcccccCCCchhh
Q 009195 266 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYE-VPGKHSAIKGSGKIAHTDDFRCL 344 (540)
Q Consensus 266 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~~~~s~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l 344 (540)
.+..++.+++..+ +||||+| |+. +++.++|++.+++.+...+.+..
T Consensus 191 ~i~~~~~l~~l~~--------------------------------~PESPk~-Ll~~k~~~~~A~~sl~~y~G~~~~~~~ 237 (485)
T KOG0569|consen 191 LIPALLQLALLPF--------------------------------LPESPKY-LLIKKGDEEEARKALKFYRGKEDVEAE 237 (485)
T ss_pred HHHHHHHHHHHhc--------------------------------CCCCcch-HHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence 8887777766655 6999999 776 78888888888888765432221
Q ss_pred --HHHhhhhccccC--CCCCCc-ccchhhHHHHHHHHhhhhhhhhhHHHHHHhhhhhhHHHHHHhhhcccc---------
Q 009195 345 --DKAALELKEDVI--NPSPWK-LCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM--------- 410 (540)
Q Consensus 345 --~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--------- 410 (540)
+...+.++++.+ ++..++ .+... ..++.+...+.+.+.+++.......+++.......+++...
T Consensus 238 ~e~~~~e~~~~~~~~~~~~sl~~~~~~~--~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g 315 (485)
T KOG0569|consen 238 IEEMLREIEEEELEKKKQISLRQLLKNP--TLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIG 315 (485)
T ss_pred HHHHHHHHHHhccccccCCcHHHHhcCc--chhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111222222111 111211 11111 12333444555556666555444444444433322222211
Q ss_pred -------------CCCCCCChhHHH-----HHHHHHHHHH---------------------HHHh---------------
Q 009195 411 -------------GHPRGASQLQRV-----GIGLAVSILS---------------------VIWA--------------- 436 (540)
Q Consensus 411 -------------~~~~~~~~~~~~-----~~g~~~~~~~---------------------~~~~--------------- 436 (540)
.++.++.++... .+..++..++ +...
T Consensus 316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aE 395 (485)
T KOG0569|consen 316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAE 395 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH
Confidence 111111122111 1111100000 0000
Q ss_pred -ccchhHHHHHHHHHHHhhHHHHHHHHHHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHHHHHHHhhhhc
Q 009195 437 -APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR 515 (540)
Q Consensus 437 -~P~~~rg~~~g~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~i~~~~~~~~ 515 (540)
+|.+.|+.++++..+.+|+.+++....++++.+..| .++|+++++.+++..++.|...||
T Consensus 396 Lf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-------------------~~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 396 LFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-------------------PYVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred hCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------chhhHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999998777 267888999999999999999999
Q ss_pred ccccccccCCCchhhh
Q 009195 516 YKYRSEQKHGNDYEVM 531 (540)
Q Consensus 516 ~~~~~~~~~~~~~~~~ 531 (540)
||+|+-+|+.++.+..
T Consensus 457 Tkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 457 TKGRTPYEIIEELEKR 472 (485)
T ss_pred cCCCCHHHHHHHHHhC
Confidence 9999988777666654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=212.86 Aligned_cols=185 Identities=15% Similarity=0.131 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH
Q 009195 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--------HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (540)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l--------g~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i 139 (540)
.+.++...+..+...+....+.. ....+++.+ +.+..+.+++.+.+.++..++++++|+++||+ |||+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~ 88 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISG-TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSL 88 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehH-hHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence 34444455444444444432322 223355554 88899999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 009195 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (540)
Q Consensus 140 ~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~ 219 (540)
+++.+++.++.+.++++......... +.......++++|++.|++.|+..+...++++|++|++
T Consensus 89 ~~~~~l~~i~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 152 (479)
T PRK10077 89 KIAAVLFFISALGSAWPEFGFTSIGP----------------DNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH 152 (479)
T ss_pred HHHHHHHHHHHHHHHhhccccccccc----------------cchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence 99999998888777653110000000 00133567889999999999999999999999999998
Q ss_pred CchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHHHHHHHH
Q 009195 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 220 ~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~--------~~~gw~~~f~i~~i~~~~~~~~~ 276 (540)
+ |++.++++..+..+|..++++++..+. +..|||+.|++.++..++..+..
T Consensus 153 ~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 153 I------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred h------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH
Confidence 8 999999999999999999887765543 35689999998777665554443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=214.67 Aligned_cols=339 Identities=14% Similarity=0.146 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch
Q 009195 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (540)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (540)
+.+++.+...++..++.++.|+++|++ |||++++++.+++.+|.++++.+ .
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a----------------------------~ 140 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA----------------------------P 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh----------------------------h
Confidence 448999999999999999999999997 99999999999999999999987 6
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhc-cchHHHHHH
Q 009195 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA 264 (540)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~-~gw~~~f~i 264 (540)
+..+++++|++.|+|.|+.....+.+++|..|++. |+...+.+++..++|..++..++....+. .+||..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 78999999999999999999999999999999999 99999999999999999995555444332 489988888
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCCc---
Q 009195 265 LAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDF--- 341 (540)
Q Consensus 265 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 341 (540)
..+..++..+.+++ +||+|+| +.++++.+++++.+.++....+.
T Consensus 215 ~~i~~~~~~~~~~~--------------------------------~pesp~~-L~~~g~~~~a~~~l~~l~g~~~~~~~ 261 (513)
T KOG0254|consen 215 ALIPAVILALGMLF--------------------------------LPESPRW-LIEKGRLEEAKRSLKRLRGLSPEDVE 261 (513)
T ss_pred HHHHHHHHHHHHHh--------------------------------CCCChHH-HHHcCChHHHHHHHHHHhCCCCcchH
Confidence 77776666555333 5788888 77777777666666665542111
Q ss_pred hhhHHHhhhhcccc---CCCCCCcccchhhHHHHHHHHhhhhhhhhhHHHHHHhhhhhhHHHHHHhhhccc-c-------
Q 009195 342 RCLDKAALELKEDV---INPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH-M------- 410 (540)
Q Consensus 342 ~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~------- 410 (540)
..++..+.....+. ..+..|..+.. ....|++...+.+..+++........+++..+.+..+.+.. .
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~ 339 (513)
T KOG0254|consen 262 VELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILG 339 (513)
T ss_pred HHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHH
Confidence 11111111110000 01111222221 12344555555666666654444444444333333322211 0
Q ss_pred ---------------CCCCC---CChhHHHHHHHHHHHHHHHH---------------------------h---------
Q 009195 411 ---------------GHPRG---ASQLQRVGIGLAVSILSVIW---------------------------A--------- 436 (540)
Q Consensus 411 ---------------~~~~~---~~~~~~~~~g~~~~~~~~~~---------------------------~--------- 436 (540)
+.+++ ......+.+++++.+..... .
T Consensus 340 ~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~ 419 (513)
T KOG0254|consen 340 VVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVI 419 (513)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhh
Confidence 11111 11111122222211111000 0
Q ss_pred ----ccchhHHHHHHHHHHHhhHHHHHHHHHHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHHHH-HHHh
Q 009195 437 ----APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFC-AFLY 511 (540)
Q Consensus 437 ----~P~~~rg~~~g~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~i-~~~~ 511 (540)
+|.+.|+++.++....+|+.+++.......+....+ ....|+++++++.+..+ ++++
T Consensus 420 ~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~------------------~~~~f~~f~~~~~~~~~~fv~~ 481 (513)
T KOG0254|consen 420 VSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG------------------IGGTFGYFGGICLLSLIIFVFF 481 (513)
T ss_pred hhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------ccchHHHHHHHHHHHHHHHheE
Confidence 999999999999999999999999888777654211 12456666777777777 8899
Q ss_pred hhhcccccccccCCCchhhhh
Q 009195 512 SAYRYKYRSEQKHGNDYEVME 532 (540)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~ 532 (540)
+.+|+|+++.||+++.++...
T Consensus 482 ~~pETkg~sleei~~~~~~~~ 502 (513)
T KOG0254|consen 482 FVPETKGLTLEEINELFEEGI 502 (513)
T ss_pred EcccCCCCcHHHHHHHHHcCC
Confidence 999999999998877665543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-20 Score=194.98 Aligned_cols=167 Identities=11% Similarity=0.037 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..+..++..++..+..+.+...++ .+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~ 101 (434)
T PRK11663 24 ILITMYLGYALFYFTRKSFNAAMP-EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII 101 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence 444445555555555555555554 44567999999999999999999999999999999998 9999999999999988
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+++..+ .+...+++.|++.|++.|...+....++.|++|+++ |++
T Consensus 102 ~~~~~~~----------------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~ 147 (434)
T PRK11663 102 NILFGFS----------------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGG 147 (434)
T ss_pred HHHHHHH----------------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHH
Confidence 8877765 467788888999999999888999999999999888 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~ 272 (540)
.+++++.+.++|..++|.+.+++.+.+|||+.|++.++..++.
T Consensus 148 ~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 148 WWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877655443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-20 Score=191.40 Aligned_cols=176 Identities=13% Similarity=0.109 Sum_probs=147.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 009195 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (540)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l 145 (540)
++|..++.+.+..++.....|...+ +...+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVG-LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHc-chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 3455566666666665444443323 34567889999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 009195 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (540)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (540)
..++.+.+.++ .+...++++|++.|++.+...+...+++.|++|+++
T Consensus 84 ~~~~~~~~~~~----------------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~----- 130 (390)
T PRK03545 84 FIASHVLSALA----------------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK----- 130 (390)
T ss_pred HHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh-----
Confidence 99998888775 467889999999999999888999999999999888
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
|++.++++..+.++|..++|.+++.+.+..|||+.|++.++..++..+..+
T Consensus 131 -r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~ 181 (390)
T PRK03545 131 -KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLI 181 (390)
T ss_pred -hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999889999999988776655544433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-19 Score=187.34 Aligned_cols=177 Identities=10% Similarity=-0.049 Sum_probs=148.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
.++.+..+.+..++..++.....+.++.|+++++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~ 91 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC 91 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence 344677788888888888877888889999999999999999999999999999999999999998 9999999999888
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.++.+.+.++...... +. .+...+++.|++.|++.+...+....++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~~~~-~~-------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------ 145 (399)
T PRK05122 92 ALSGLLYLLAGLLAAW-PV-------------------LSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------ 145 (399)
T ss_pred HHHHHHHHHhhhhhcc-ch-------------------hHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------
Confidence 8876666554210000 00 245678899999999999999999999999999888
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~ 270 (540)
|++.++++..+.++|..+++.+++++.+..||++.+++..+..+
T Consensus 146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 146 TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999998888999999999999999999999998876655443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-19 Score=188.53 Aligned_cols=176 Identities=17% Similarity=0.169 Sum_probs=150.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+++|..+...++..++..+..+...... +.+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence 4667777777778888888776655554 456678999999999999999999999999999999998 99999999998
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.+++.++ .+...+++.|++.|++.+...+...++++|.+|+++
T Consensus 89 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 136 (406)
T PRK11551 89 LFGLFSLATAQA----------------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL---- 136 (406)
T ss_pred HHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH----
Confidence 888887776664 457788899999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~ 276 (540)
|++.+++++...++|+.+++.+++.+.+..+|++.|++.+++.++..++.
T Consensus 137 --r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK11551 137 --RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLL 186 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888899999988776555444433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=199.77 Aligned_cols=152 Identities=18% Similarity=0.276 Sum_probs=127.4
Q ss_pred HHHHHhhCCC--------hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 009195 94 TFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (540)
Q Consensus 94 ~yl~~~lg~~--------~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~ 165 (540)
..+..+++.+ ..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.+++.+... .
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~------~ 124 (481)
T TIGR00879 52 ALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF------A 124 (481)
T ss_pred hcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc------c
Confidence 3445555555 88999999999999999999999999998 9999999999999998888865421 0
Q ss_pred CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHH
Q 009195 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (540)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~ 245 (540)
.+...++++|++.|++.+...+...++++|.+|+++ |++.+++++...++|..++
T Consensus 125 -------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~ 179 (481)
T TIGR00879 125 -------------------LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVA 179 (481)
T ss_pred -------------------cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHH
Confidence 245678899999999999999999999999999988 9999999999999999999
Q ss_pred HHHH---HHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 246 FTLV---VYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 246 p~i~---~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
+.++ ..+....+||+.|++.++..++.++..+
T Consensus 180 ~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 180 YGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLF 214 (481)
T ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 9998 6666778999999986665555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-19 Score=189.17 Aligned_cols=172 Identities=19% Similarity=0.163 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (540)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~ 153 (540)
++...++..++.......++.+. ++++.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGL 99 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHH
Confidence 34445555555544444455554 56788999999999999999999999999999998 99999999888777776665
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 009195 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~ 233 (540)
...... .. .+...+++.|++.|++.+...+...+++.|.+|+++ |++..++
T Consensus 100 ~~~~~~----~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 150 (417)
T PRK10489 100 ALNAFL----PE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI 150 (417)
T ss_pred HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence 432110 11 346677888999999988888888899999999887 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 234 ~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~ 276 (540)
.+...++|..+||.+++++.+..+|++.|++.++..+++.++.
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888899999988776665554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-18 Score=178.37 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=165.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 009195 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (540)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~ 142 (540)
..+..|..++.+.+..|.....-+....- .+.+.+++|.+..++++.++.|..+..++.|+...+.||+ .||++++..
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gL-Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~ 84 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGL-LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGL 84 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhc-hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHH
Confidence 34555668888888888888888765554 4567889999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch
Q 009195 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (540)
Q Consensus 143 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~ 222 (540)
+++++++.++++++ .|+..++++|++.|+..|.+.+...+..+++.|+++
T Consensus 85 l~lFi~~n~l~alA----------------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~-- 134 (394)
T COG2814 85 LALFIVSNLLSALA----------------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK-- 134 (394)
T ss_pred HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc--
Confidence 99999999999998 679999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 223 ~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
|++++++...+..+...+|..++.++-+.+|||+.|++.+++.+++++..+...|
T Consensus 135 ----~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 ----RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ----hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999988888877777666555
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-18 Score=189.16 Aligned_cols=175 Identities=18% Similarity=0.133 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH-HHH-----HHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 009195 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSN-----AVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (540)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~-~~~-----~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i 141 (540)
++.++...+..+++.+.+. +..+...++.++++.+... ..+ +.++..++..++.+++|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 4455666677777777775 4455566888887643211 111 24667788999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 009195 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (540)
Q Consensus 142 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~ 221 (540)
+.+++.++.++++++.++..+-. ....+++++|+++|++.|+..+...++++|.+|++.
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g~--------------------~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIGI--------------------WAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHHH--------------------HHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence 99999999999887621000000 011247899999999999999999999999999998
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHH
Q 009195 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (540)
Q Consensus 222 ~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~--------~~~gw~~~f~i~~i~~~ 270 (540)
|+...++...+..+|..+++.+...+. .++|||+.|++.++..+
T Consensus 152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 999999988777888877776654432 25799999998665443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-19 Score=185.57 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=150.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+.+|+....+++..++..+....+.. ....+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~ 81 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMV 81 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHH
Confidence 34676777777766776776655544 44589999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
++.++.++++++ .+...++++|++.|++.++..+....+++|.+|+++
T Consensus 82 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---- 129 (412)
T TIGR02332 82 LWGIASTATMFA----------------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF---- 129 (412)
T ss_pred HHHHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH----
Confidence 999999888876 457789999999999999999988899999999888
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhh------ccchHHHHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~------~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
|++.+++++.+..+|..+++.+++++.+ ..|||+.|++.++..++..++.++
T Consensus 130 --rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 130 --RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998864 368999999877766554444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-19 Score=184.20 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 009195 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (540)
Q Consensus 86 ~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~ 165 (540)
+.+.+. .+.+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++.++.++++++
T Consensus 26 ~~~~~~-lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a--------- 94 (393)
T PRK09705 26 TSVGPL-LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY--------- 94 (393)
T ss_pred hccchh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC---------
Confidence 444444 4567789999999999999999999999999999999998 99999999999999999999886
Q ss_pred CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHH
Q 009195 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (540)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~ 245 (540)
.+...++++|++.|++.+...+....++.|.+| ++ |++.++++..+.++|..++
T Consensus 95 -------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g 148 (393)
T PRK09705 95 -------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG 148 (393)
T ss_pred -------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence 457788899999999999999999999999987 66 8999999999999999999
Q ss_pred HHHHHHhhhcc-chHHHHHHHHHHHHHH
Q 009195 246 FTLVVYIQMEH-GWGSAFGALAIAMGIS 272 (540)
Q Consensus 246 p~i~~~l~~~~-gw~~~f~i~~i~~~~~ 272 (540)
+.+++++.++. +||+.+.+.++..++.
T Consensus 149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 149 AAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999988775 7998876655444333
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=182.66 Aligned_cols=172 Identities=13% Similarity=0.034 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.++.+.+..++..++.....+.++.|+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA 94 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence 455566666677777766777888899999999999999999999999999999999999998 9999999998877766
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+........+.. . ..+...++++|++.|++.+...+...+++.|.+|+++ |++
T Consensus 95 ~~~~~~~~~~~~~-~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 148 (392)
T PRK12382 95 GLAYLLAAILPVS-A-------------------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK 148 (392)
T ss_pred HHHHHhhhccccc-h-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence 5443332110000 0 0357788999999999999888888889999999888 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~ 268 (540)
+++++..+.++|..++|.+++++.+..||++.+.+..+.
T Consensus 149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 999999999999999999999998888999876655443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=180.74 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=136.7
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 009195 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (540)
Q Consensus 90 ~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 169 (540)
....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~------------- 79 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA------------- 79 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence 3445568889999999999999999999999999999999998 99999999999988888888775
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHH
Q 009195 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (540)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~ 249 (540)
.+...++++|++.|++.+...+....++.|.+|+++ |++.+++++...++|..++|.++
T Consensus 80 ---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~ 138 (399)
T TIGR00893 80 ---------------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLV 138 (399)
T ss_pred ---------------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHH
Confidence 457889999999999999999999999999999888 99999999999999999999999
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 250 ~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
+++.+..+|++.|++.++..++..++.+.
T Consensus 139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 139 GWILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 99999899999998877766555554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=180.82 Aligned_cols=155 Identities=13% Similarity=0.104 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 009195 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (540)
Q Consensus 88 ~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~ 167 (540)
......+.+++++|++..+.+++.+.+.+++.++.++.|+++||+ |||+++..+.+....+.+.....
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~----------- 76 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP----------- 76 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh-----------
Confidence 334455677889999999999999999999999999999999998 99998776655554443222211
Q ss_pred cccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHH
Q 009195 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (540)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~ 247 (540)
.+...++++|++.|++.+.. ......++|.+|+++ |++.+++.+.+..+|..+++.
T Consensus 77 -----------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~ 132 (368)
T TIGR00903 77 -----------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALA 132 (368)
T ss_pred -----------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999864 455566699999888 999999999999999999999
Q ss_pred HHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
+++++.++.|||+.|.+.+++.++..++++.
T Consensus 133 ~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 133 AGLKIYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998866665555444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=182.48 Aligned_cols=174 Identities=15% Similarity=0.135 Sum_probs=150.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 009195 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (540)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~ 147 (540)
.|..+.+....++..++.+.+.++++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~ 84 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFA 84 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHH
Confidence 44677788888999999999999999999999999999999999999999999999999999997 99999999998888
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++.+++.+. .+...+++++.+.|.+.+...+...++.+|.+|+++ |
T Consensus 85 ~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 130 (395)
T PRK10054 85 SGFIAIPLV----------------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------K 130 (395)
T ss_pred HHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------H
Confidence 887777665 356667777888888877778888999999999887 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
++.+++.+...++|..++|.+++++.+ .+|+..|++.+++.++.+++..
T Consensus 131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875 6899999987777666544433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-18 Score=181.90 Aligned_cols=168 Identities=15% Similarity=0.210 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~ 151 (540)
+.++...++..++.+.+.++++.|+++++|++..+.+++.+...+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 6677888889999999999999999999999999999999999999999999999999998 999999999999999888
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~ 231 (540)
++... .+.+.++++|++.|++.+...+...+++.|.+|+++ |++++
T Consensus 92 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~ 137 (400)
T PRK11646 92 TMAIA----------------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF 137 (400)
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 87764 356778889999999998888889999999999887 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 232 ~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~ 275 (540)
++.+...++|..+||.+++++. .+||++.|++.++..++..++
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 679999999877665554443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=186.26 Aligned_cols=155 Identities=11% Similarity=0.071 Sum_probs=123.8
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 009195 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (540)
Q Consensus 91 ~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 170 (540)
...+++.++ |++..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.++++++.. ..
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~-----~~----- 117 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW-----AT----- 117 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc-----cc-----
Confidence 345577777 99999999999999999999999999999998 9999999999998888887766411 00
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHH-HHHHHH
Q 009195 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV 249 (540)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~-i~p~i~ 249 (540)
.+...+++.|++.|++.+...+.....+.|++|+++ |++++++++.+.++|+. ++|+++
T Consensus 118 --------------~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~ 177 (452)
T PRK11273 118 --------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL 177 (452)
T ss_pred --------------ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 246677888999999999888888888999999888 99999999999998864 455544
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 250 VYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 250 ~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
..+....+||+.|++.++..++..++.+
T Consensus 178 ~~~~~~~gw~~~f~i~~~~~~~~~~l~~ 205 (452)
T PRK11273 178 LGMAWFNDWHAALYMPAFAAILVALFAF 205 (452)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3443445899999987766555444333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-18 Score=180.93 Aligned_cols=175 Identities=13% Similarity=0.197 Sum_probs=150.8
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 009195 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (540)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~ 142 (540)
..+.+|+......+..++..+..+.+... ...+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV-LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 45677888888888888888888665554 4567789999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch
Q 009195 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (540)
Q Consensus 143 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~ 222 (540)
.++..++.+++.++ .+...++++|++.|++.+...+...+++.|.+|+++
T Consensus 84 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 133 (405)
T TIGR00891 84 IVLFSAGTLACGFA----------------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL-- 133 (405)
T ss_pred HHHHHHHHHHHHHh----------------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence 99888888877765 457788899999999999999999999999999988
Q ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHH
Q 009195 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISN 273 (540)
Q Consensus 223 ~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g--w~~~f~i~~i~~~~~~ 273 (540)
|++..++++.+..+|..+++.+++.+.+..+ ||+.|++.++..++.+
T Consensus 134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887766 9999987655544443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-18 Score=179.62 Aligned_cols=172 Identities=13% Similarity=0.088 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
...+.+..++..++...+.+.++ .+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||++++++.++..++.
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~ 92 (406)
T PRK15402 15 PLCLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTC 92 (406)
T ss_pred HHHHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHH
Confidence 33333444444444444444444 46678999999999999999999999999999999998 99999999998888888
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
+++..+ .+...+++.|++.|++.+...+...+++.|.+|+++ |.+.
T Consensus 93 ~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~ 138 (406)
T PRK15402 93 LAILLA----------------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKI 138 (406)
T ss_pred HHHHHH----------------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHH
Confidence 777665 356778889999999999888888999999999887 8888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
.++.+....++..++|.+++++.++.+|++.|++.++..++..+..+.
T Consensus 139 ~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 139 TALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 888877788899999999999988889999998877776665554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=185.15 Aligned_cols=168 Identities=16% Similarity=0.185 Sum_probs=144.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+.+++......+..+...+..+.. .++..++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 344555666666666666666444 4555678889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.++++++ .+...++++|++.|++.+...+....++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~---- 139 (426)
T PRK12307 92 AYSVGTGLSGLA----------------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL---- 139 (426)
T ss_pred HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH----
Confidence 999998888776 467889999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~ 268 (540)
|++..++++.+..+|..+++.+.+++.+..+||+.|++..+.
T Consensus 140 --r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 140 --KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred --hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 999999999999999999999999998889999999875443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-18 Score=180.80 Aligned_cols=178 Identities=12% Similarity=0.036 Sum_probs=151.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 009195 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (540)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~ 147 (540)
.+.++.+.+..++..+..+.+.+.++.+.+ ++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 446777888888888888888777776664 6999999999999999999999999999999998 99999999988888
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++.+.+.++ .+...++++|++.|++.++..+...+++.|.+|++. |
T Consensus 87 ~~~~~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~ 132 (471)
T PRK10504 87 LGSLFCALS----------------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y 132 (471)
T ss_pred HHHHHHHHh----------------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence 888776654 356778899999999999999999999999999877 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
++.+++++...++|..++|.+++++.++.||++.|++......+..++.....+
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999877666555554444433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-17 Score=174.55 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=151.5
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Q 009195 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (540)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~ 140 (540)
+..+|..|+....+.+..++.....|.....++. +.+++|+++++.++..+.+.++..++.++.|+++||+ |||++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~ 89 (394)
T PRK10213 12 DAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVI 89 (394)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHH
Confidence 3455667877777776666666666665555544 5678999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 009195 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (540)
Q Consensus 141 i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~ 220 (540)
++.++..++.+++..+ .+.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 90 ~~~~~~~~~~~~~~~~----------------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 141 (394)
T PRK10213 90 LFAVLLTLSCLLVSFA----------------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT 141 (394)
T ss_pred HHHHHHHHHHHHHHHH----------------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH
Confidence 9999999988887765 468889999999999999999999999999999888
Q ss_pred chhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (540)
Q Consensus 221 ~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~ 273 (540)
|+++.++...+.++|..++|.+++++.+..|||+.|++.++..++..
T Consensus 142 ------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 142 ------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988766554443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=194.46 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=127.5
Q ss_pred HHHHHhhCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 009195 94 TFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (540)
Q Consensus 94 ~yl~~~lg~~---~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 170 (540)
..+.++++++ ..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.++++++
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~-------------- 177 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS-------------- 177 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc--------------
Confidence 3466789998 88999999999999999999999999997 99999999999998888887765
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHH
Q 009195 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (540)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~ 250 (540)
.+...++++|++.|++.++..+....++.|.+|++. |+...+++..+..+|..+++.++.
T Consensus 178 --------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 237 (505)
T TIGR00898 178 --------------PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAY 237 (505)
T ss_pred --------------ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999988 999999998888999999998876
Q ss_pred HhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 251 YIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 251 ~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
.+.+ ||+.|++.++..++..+..+
T Consensus 238 ~~~~---wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 238 FIPD---WRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred HhhH---HHHHHHHHHHHHHHHHHHHH
Confidence 6654 99999888777665555443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-23 Score=224.37 Aligned_cols=337 Identities=17% Similarity=0.149 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch
Q 009195 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (540)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (540)
..++..+...++..+|.+++|+++||+ |||++++++.++.+++.++..++... .
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-------------------------~ 100 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-------------------------N 100 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-------------------------c
Confidence 467889999999999999999999998 99999999999999999988876210 1
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhc---cchHHHH
Q 009195 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAF 262 (540)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~---~gw~~~f 262 (540)
+...+.++|++.|++.|+..+..+.++.|..|++. |+...++.+....+|..++..++..+.+. .+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 67889999999999999999999999999999999 99999998888888888887766544332 3599988
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCCch
Q 009195 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFR 342 (540)
Q Consensus 263 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 342 (540)
++.++..++.++...+ +||||+| ++.+++.+++.+..+++++.+..+
T Consensus 175 ~~~~~~~l~~~~~~~~--------------------------------~pESP~w-L~~~~~~~~A~~~l~~~~~~~~~~ 221 (451)
T PF00083_consen 175 IFGAIPSLLVLLLRFF--------------------------------LPESPRW-LLSKGRDEEAEKVLRKLRGKEIED 221 (451)
T ss_pred cccccccccccccccc--------------------------------cccccce-eccccccccccccccccccccccc
Confidence 8877766544433322 6999999 999988889988888865432111
Q ss_pred -hhHHHhhhhccccCCCCCCcccchhhHHHHHHHHhhhhhhhhhHHHH-HHhhhhhhHHHHHHhhhccc-c---------
Q 009195 343 -CLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN-VILTEFLTLSVQQAYTMNTH-M--------- 410 (540)
Q Consensus 343 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~-~--------- 410 (540)
..++.....+...+.+..|+...+... .+++++..+.+...+.... ....++.+.+.. ..+.+.. .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~ 299 (451)
T PF00083_consen 222 EEIEEIKAEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFE-NAGISNSFLATLILGLVN 299 (451)
T ss_pred ccccccccccccccccceeeeecccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 111111111110001122333222211 2233333333333332221 111111111111 1111111 0
Q ss_pred ------------CCCCCCCh---hHHHHHHHHHHH------H------HHHH--------h-----------------cc
Q 009195 411 ------------GHPRGASQ---LQRVGIGLAVSI------L------SVIW--------A-----------------AP 438 (540)
Q Consensus 411 ------------~~~~~~~~---~~~~~~g~~~~~------~------~~~~--------~-----------------~P 438 (540)
+.+++... ...+.+..+..+ . ..+. + +|
T Consensus 300 ~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfP 379 (451)
T PF00083_consen 300 FLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFP 379 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccc
Confidence 11111100 000011100000 0 0000 0 99
Q ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 009195 439 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 518 (540)
Q Consensus 439 ~~~rg~~~g~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~i~~~~~~~~~~~ 518 (540)
.+.|+.++|+....+++++++++.+.+.+.+..+ ....|+++++++++..++.+++.||+++
T Consensus 380 t~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~------------------~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 380 TKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG------------------GWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------------------ccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 9999999999999999999999988887665222 1245778888888998899999999999
Q ss_pred cccccCCCc
Q 009195 519 RSEQKHGND 527 (540)
Q Consensus 519 ~~~~~~~~~ 527 (540)
++++|++++
T Consensus 442 ~~l~ei~~~ 450 (451)
T PF00083_consen 442 KTLEEIQEM 450 (451)
T ss_pred CCHHHHHhh
Confidence 999987764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=186.27 Aligned_cols=156 Identities=15% Similarity=0.071 Sum_probs=127.8
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 009195 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (540)
Q Consensus 92 ~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 171 (540)
..+.+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+.++.....
T Consensus 51 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~------------ 117 (467)
T PRK09556 51 AQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS------------ 117 (467)
T ss_pred hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc------------
Confidence 34567889999999999999999999999999999999998 99999998888777766665543110
Q ss_pred cccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 009195 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (540)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~ 251 (540)
...+...+++.|++.|++.+...+....+++|++|+++ |++.++++..+.++|+.+++.+..+
T Consensus 118 -----------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~ 180 (467)
T PRK09556 118 -----------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALW 180 (467)
T ss_pred -----------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHH
Confidence 00467889999999999999999999999999999999 9999999999999999999998877
Q ss_pred hhhcc---chHHHHHHHHHHHHHHHHHHH
Q 009195 252 IQMEH---GWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 252 l~~~~---gw~~~f~i~~i~~~~~~~~~~ 277 (540)
+.... +|+..|.+.++..++..++.+
T Consensus 181 ~~~~~~~~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 181 GANYFFDGHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred HHHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence 76643 588888776665544433333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=177.98 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=130.5
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHH-----HHHHHHHHHHHhHHHHHhhhccchH
Q 009195 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRY 136 (540)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l--g~~~~~~~~~~-----~~~~~~~~~~~~~~G~lsD~~~GR~ 136 (540)
...+++.....++..+++.+.+..+....+.++.+++ +.++.. +++. ++..++..++.++.|+++||+ |||
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr 94 (438)
T PRK09952 17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRK 94 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccH
Confidence 3455666777777777777777655445555666655 666653 3332 233345667888899999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccC
Q 009195 137 WTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (540)
Q Consensus 137 ~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~ 216 (540)
+++.++.+++.++.++++++.++.... -.....++++|++.|++.|+..+....++.|.+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~ 154 (438)
T PRK09952 95 RMLMLTVWMMGIATALIGLLPSFSTIG--------------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA 154 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHH--------------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence 999999999999998888762100000 011235778999999999999999999999999
Q ss_pred CCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhh--------hccchHHHHHHHHHHH
Q 009195 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAM 269 (540)
Q Consensus 217 ~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~--------~~~gw~~~f~i~~i~~ 269 (540)
|+++ |+...+..+.+..+|..++..+..++. ..+|||+.|++.++..
T Consensus 155 p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 155 PKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred CCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 9988 999888888888888888877766654 2579999998876654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=174.80 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLS---VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~---~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
--+.++...++...++|.+. ....+++.++.++|.+|.+.+.+.+.+.+.++-.+.|.++||. +.|..+-++.++.
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLils 104 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHH
Confidence 34667777788888888764 3457789999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.+..+++.++ .+...+.+..++.|++.|.-.|.....++.+||+++
T Consensus 105 ai~nil~Gfs----------------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------ 150 (448)
T COG2271 105 AIVNILFGFS----------------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------ 150 (448)
T ss_pred HHHHHHHhhh----------------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------
Confidence 9999888876 457778888899999999999999999999999999
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHH--HHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~--~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~ 279 (540)
||+..++++.+-|+|+++.|.+. +++..+.+||.+|++++++.++..+.++..
T Consensus 151 RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 151 RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999998876655555443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-18 Score=182.33 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=125.9
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccc
Q 009195 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (540)
Q Consensus 93 ~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 172 (540)
...+.+++|++.++.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++.++++.+
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~---------------- 104 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFS---------------- 104 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHh----------------
Confidence 4566789999999999999999999999999999999997 99999999998888888877665
Q ss_pred ccccCCCCCccchhHHHHHH-HHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 009195 173 SQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (540)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~ 251 (540)
.+...+++ .|++.|++.+...+...+++.+.++ ++ |++..++.+.+..+|..++|.++++
T Consensus 105 ------------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~ 165 (455)
T TIGR00892 105 ------------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQY 165 (455)
T ss_pred ------------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34555544 4688899988766666678889885 56 9999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 252 IQMEHGWGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 252 l~~~~gw~~~f~i~~i~~~~~~~~~~~~ 279 (540)
+.+.+|||+.|++.+++.+++.+..++.
T Consensus 166 l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 166 LFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887766555544443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-17 Score=174.68 Aligned_cols=175 Identities=15% Similarity=0.089 Sum_probs=132.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
+++.+.......++..+..+.+.. ...++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAP-LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 444555555555555555554443 34577889999999999999999999999999999999998 9999999998888
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.++.++++++ .+...+++.|++.|++.+... ....+++|++|+++
T Consensus 112 ~~~~~~~~~~----------------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------ 156 (476)
T PLN00028 112 APAVFCMSLV----------------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------ 156 (476)
T ss_pred HHHHHHHHHh----------------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------
Confidence 8887777665 356677888999999988654 34567899999988
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhh----h-----ccchHHHHHHHHHHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~----~-----~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
|++++++.+...++|+.+++.+.+.+. + ..|||+.|++.+++.++..++.++
T Consensus 157 rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 157 VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999987777777777766655442 2 248999999887776555444443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-17 Score=172.57 Aligned_cols=172 Identities=12% Similarity=-0.012 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH-----HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~-----~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
......+..++..+++....+.++.|++ ++|++..+ .+++.+++.++..++.++.|+++||+ |||++++++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 92 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHH
Confidence 4555566677777887777777787775 58887554 37888889999999999999999998 99999999988
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.+++... .+...+++.|++.|++.+ ..+....++.|.+|+++
T Consensus 93 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---- 139 (408)
T PRK09874 93 GMGIVMVLMGLA----------------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRNK---- 139 (408)
T ss_pred HHHHHHHHHHHH----------------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh----
Confidence 888887776654 457788889999998855 45777788899999887
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
|++..++++...++|..++|.+++++.+..+|++.|++.++..++..+..+.
T Consensus 140 --~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (408)
T PRK09874 140 --SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF 191 (408)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998889999998887766555544433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-18 Score=180.58 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=128.1
Q ss_pred hhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 009195 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (540)
Q Consensus 99 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (540)
+++++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+++..+..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6889999999999999999999999999999998 9999999999888887776654321
Q ss_pred CCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhcc-c
Q 009195 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G 257 (540)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~-g 257 (540)
.+...+++.|++.|++.+...+....+++|.+|+++ |+++.++++.+.++|..++|.+++++.+.. |
T Consensus 129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g 196 (465)
T TIGR00894 129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG 196 (465)
T ss_pred ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 235678889999999999999999999999999988 999999999999999999999999999884 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 009195 258 WGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 258 w~~~f~i~~i~~~~~~~~~~~ 278 (540)
||+.|++.++..++..++++.
T Consensus 197 w~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 197 WPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred CCeehhhhhHHHHHHHHHHHH
Confidence 999999887766555444443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=171.36 Aligned_cols=173 Identities=17% Similarity=0.080 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (540)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~ 153 (540)
++...++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 445566666666555566666665 5899999999999999999999999999999998 99999999998888877776
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 009195 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~ 233 (540)
...... +. .+...++++|++.|++.+...+...++++|.+|+++ |++.+++
T Consensus 82 ~~~~~~----~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (365)
T TIGR00900 82 PFVALL----GG-------------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL 132 (365)
T ss_pred HHHHHc----CC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence 665210 00 267888999999999999999999999999999887 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 234 ~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
++....+|..++|.+++++.+..||++.|++.++..+++.+..+
T Consensus 133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999989999999887776655544433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-17 Score=173.30 Aligned_cols=178 Identities=16% Similarity=0.209 Sum_probs=130.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CChHHHHHHHHHH---HHHHHHHHhHHHHHhhhccchHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNF---LGISQASSVLGGFLADAYLGRYWTIA 140 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg---~~~~~~~~~~~~~---~~~~~~~~~~~G~lsD~~~GR~~~i~ 140 (540)
++..+....+..+++.+.++. ..++..++.++++ .+..+.+.+.+.+ .++..++.+++|+++||+ |||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~ 97 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence 333445555566777777754 5566678888874 5555444444444 444458999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 009195 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (540)
Q Consensus 141 i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~ 220 (540)
++.+++.++.++++++.++.... -.....+++.|+++|++.|+..+...++++|.+|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIG--------------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHH--------------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 99999999998887752100000 0123468899999999999999999999999999988
Q ss_pred chhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHHHH
Q 009195 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGIS 272 (540)
Q Consensus 221 ~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~--------~~~gw~~~f~i~~i~~~~~ 272 (540)
|++..++.+.+.+.|..+++.+...+. ..+|||+.|++.++..++.
T Consensus 158 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 158 ------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 999999888888888888877655443 2579999998876655443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-17 Score=170.25 Aligned_cols=149 Identities=15% Similarity=0.086 Sum_probs=131.3
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccccc
Q 009195 95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174 (540)
Q Consensus 95 yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (540)
.+.+++|.+..+.++.++++.++..++.+++|+++||+ |||++++.+.+++.++.+++..+
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a------------------ 101 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT------------------ 101 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc------------------
Confidence 46789999999999999999999999999999999998 99999999999999988888775
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 009195 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (540)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~ 254 (540)
.+...++++|+++|++.+...+....++.|.+|+++ |++.+++++...++|..++|++++++.+
T Consensus 102 ----------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~ 165 (413)
T PRK15403 102 ----------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMH 165 (413)
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999988766777788999999888 9999999999999999999999999998
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Q 009195 255 EHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 255 ~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
+.|||+.|++.++..+++.+..+.
T Consensus 166 ~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 166 FVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888776666554433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-17 Score=170.12 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.++.+.+..++.....+...+.+ +.+++++|++.++.++..+.+.++..++.++.|+++||+ |||+++.++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 81 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVL-TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVIG 81 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhCh-HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHHH
Confidence 45666667777777766665655 456778999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.++++.+ .+.+.+++.|++.|++.+...+....++.|.+++++ |++
T Consensus 82 ~~l~~~~----------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~ 127 (382)
T PRK10091 82 NAMFTLS----------------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTA 127 (382)
T ss_pred HHHHHHh----------------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhH
Confidence 8888775 467889999999999999888888889999999877 899
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~ 276 (540)
.++++..+..+|..++|.+++++.+..+||+.|++.++..++..+..
T Consensus 128 ~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 128 AVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99998889999999999999999988999999998877655544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=172.62 Aligned_cols=157 Identities=14% Similarity=0.055 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 009195 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (540)
Q Consensus 85 ~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~ 164 (540)
.|.. ..+.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++
T Consensus 19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~-------- 88 (377)
T TIGR00890 19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIA-------- 88 (377)
T ss_pred Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHH--------
Confidence 4443 4456788899999999999999999999999999999999998 99999999999999999888876
Q ss_pred CCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHH
Q 009195 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (540)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i 244 (540)
.+...++++|++.|++.+...+.....+.|.+| ++ |++..+++..+.++|..+
T Consensus 89 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~ 141 (377)
T TIGR00890 89 --------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFI 141 (377)
T ss_pred --------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhH
Confidence 567888999999999999888788888888886 45 899999999999999888
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 245 ~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
++.+.+.+.+..|||+.|++.++..++..+..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 142 LSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777789999999887776555544433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-17 Score=177.41 Aligned_cols=168 Identities=14% Similarity=0.214 Sum_probs=145.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+.+|+.+..+.+..++..+..+.+. .+..++.+++|++..+.++..+.+.++..++.+++|+++||+ |||++++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 4566666677777777667665444 445677789999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.+++.++ .+...++++|++.|++.++..+....++.|.+|+++
T Consensus 94 ~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 141 (496)
T PRK03893 94 LFSVGTLACGFA----------------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL---- 141 (496)
T ss_pred HHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence 998888887765 467788999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~ 268 (540)
|++.+++++.+.++|..++|.+.+++.+..+||+.|++.++.
T Consensus 142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-17 Score=169.90 Aligned_cols=175 Identities=7% Similarity=0.054 Sum_probs=144.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
.+|++..+...+..++.....+.+...+ +.+.+++|++.++.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~ 80 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVM-GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFA 80 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 4566777777777777666665554444 456788999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.+++.++ .+...+++.|++.|++.|...+....++.|.+|+++
T Consensus 81 ~~~i~~~l~~~~----------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~---- 128 (394)
T PRK03699 81 LMILAVAGLMFS----------------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ---- 128 (394)
T ss_pred HHHHHHHHHHHc----------------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch----
Confidence 888888877765 457788899999999999888888999999999887
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~-~~gw~~~f~i~~i~~~~~~~~ 275 (540)
|++.++..+....+|+.++|.+.+++.. ..|||+.|.+.++..++..++
T Consensus 129 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 129 --RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 9999988888888999999999888764 568999998877665554443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-17 Score=178.31 Aligned_cols=180 Identities=14% Similarity=0.058 Sum_probs=152.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
+|..+..+++..++..+....+.+.+| .+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 466777778888888888866655554 55678999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccC-CCCCchhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF-DERSKDYKT 225 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~-~~~~~~~~~ 225 (540)
.++.++++.+ .+...++++|+++|+|.++..+.....+.+.+ |+++
T Consensus 82 ~~~~~~~~~a----------------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~----- 128 (495)
T PRK14995 82 GLASLAAAFS----------------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ----- 128 (495)
T ss_pred HHHHHHHHHc----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-----
Confidence 9999998876 46888999999999999998888888787777 5555
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 009195 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (540)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~ 282 (540)
|+++++++....++|..+||.+++++.++.||||.|++...+.++.+++.....++
T Consensus 129 -r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~ 184 (495)
T PRK14995 129 -RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPR 184 (495)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998776665555544444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-16 Score=166.34 Aligned_cols=177 Identities=18% Similarity=0.167 Sum_probs=146.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
+.+.++.+.+..++..++.....+. .+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPA-FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 3444455555555555555444444 3456788999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.++.+++..+ .+...++++|++.|++.+...+...+++.|.+|+++
T Consensus 81 ~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 126 (385)
T TIGR00710 81 ALSSLGLALS----------------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------ 126 (385)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence 8888887765 457788899999999999999999999999999888
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~ 279 (540)
|++.+++.+....+|..++|.+++++.+..+|++.|++.++..++..+..+..
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998999999988777665555544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-18 Score=179.56 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=134.7
Q ss_pred hhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 009195 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (540)
Q Consensus 99 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (540)
+++++..+.+++.+.+..|+.++.+.+|+++||+ |-|+++.++.++.+++.++..+++.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6788999999999999999999999999999998 9999999999999999999998854
Q ss_pred CCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhc-cc
Q 009195 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HG 257 (540)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~-~g 257 (540)
.+...+++.|+++|++.|...+++..+.+.+.|+++ |+++.++.+.+..+|.+++-.++|++.+. .|
T Consensus 126 ------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G 193 (466)
T KOG2532|consen 126 ------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG 193 (466)
T ss_pred ------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence 344577899999999999999999999999999999 99999999999999999999999999988 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 009195 258 WGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 258 w~~~f~i~~i~~~~~~~~~~~~ 279 (540)
|++.|++.++..++..++++..
T Consensus 194 W~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877666665553
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-17 Score=165.93 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (540)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~ 152 (540)
.+.+..++..+..+......+.+. +++|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 445566777777776666666666 56799999999999999999999999999999998 9999999999999999888
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 009195 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~ 232 (540)
+... .+...++++|++.|++.+...+...+++.|.+|+++ |++.++
T Consensus 81 ~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 126 (352)
T cd06174 81 LAFA----------------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALG 126 (352)
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhh
Confidence 8765 457788899999999999999999999999999988 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 233 ~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
+.+...++|..++|.+++.+.+..+|++.+++.++..++..+....
T Consensus 127 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 127 LFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999889999999887776666555444
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-16 Score=165.74 Aligned_cols=172 Identities=12% Similarity=0.057 Sum_probs=139.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
-+.||.+....+..++..++.+....+++.++ +++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~ 86 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL 86 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 45566777788888888888777777788887 57899999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.+++..... .. .+...+++.|++.|++.+...+...+.+.+.+|+++
T Consensus 87 ~~~~~~~~~~~~~~-----~~-------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~---- 138 (402)
T TIGR00897 87 LWCVGHAAFIVFGL-----GH-------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN---- 138 (402)
T ss_pred HHHHHHHHHHHHhc-----cC-------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH----
Confidence 88887665532110 00 246677788999999988777777788889999888
Q ss_pred hhhhhHHHHHHHHHhHHH-HHHHHHHHHhhhccchHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIA 268 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~-~i~p~i~~~l~~~~gw~~~f~i~~i~ 268 (540)
|+++.++++.+.++|. .++|.+++++.+..||+..++.....
T Consensus 139 --~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 139 --LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 9999999999999986 58999999998888876666554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-17 Score=173.94 Aligned_cols=156 Identities=12% Similarity=0.060 Sum_probs=126.9
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 009195 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (540)
Q Consensus 91 ~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 170 (540)
...+++++ +|++..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++..++.+++..... . .
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~---~--~----- 115 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPW---A--T----- 115 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccc---c--c-----
Confidence 33456665 599999999999999999999999999999998 9999999998888887776654310 0 0
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHH
Q 009195 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (540)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~ 250 (540)
.+...+++.|++.|++.|...+.....+.|.+|+++ |++++++++...++|+.+++.+.+
T Consensus 116 --------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 116 --------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred --------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHH
Confidence 245667788999999999988888899999999998 999999999999999999988877
Q ss_pred Hhh-hccchHHHHHHHHHHHHHHHHHHHH
Q 009195 251 YIQ-MEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 251 ~l~-~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
.+. ...+||+.|++.++..++..++.++
T Consensus 176 ~~~~~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 176 LGMAWFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 644 4568999999887776655444444
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-16 Score=167.02 Aligned_cols=171 Identities=16% Similarity=0.118 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~ 151 (540)
....+..+....+.....+. .+.+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.++++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVG-LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHH
Confidence 33444445555555444444 4456678999999999999999999999999999999998 999999999999888888
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~ 231 (540)
.+..+ .+...++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 84 ~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 129 (392)
T PRK10473 84 LCSLA----------------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVL 129 (392)
T ss_pred HHHHh----------------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHH
Confidence 77664 356678889999999999988899999999999888 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 232 ~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
++.+...++|..++|.+++++.+..+|++.|++.++..++..++.+.
T Consensus 130 ~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 130 SLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888889999998877766555444433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=165.71 Aligned_cols=169 Identities=11% Similarity=0.041 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH-HHHHHHHHHHHH
Q 009195 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGI 153 (540)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i-~~~l~~i~~~~~ 153 (540)
.+..++..++.....+.++.|+++++|.+..+.+++.+.+.++..+..++.|+++||+ ||||.+++ +.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3456677777777888899999999999999999999999999999999999999998 99887655 445445555555
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH--H
Q 009195 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF--F 231 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~--~ 231 (540)
+.+ .+...+++.|++.|.+.+...+...++..|..|++. |... .
T Consensus 82 ~~~----------------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~ 127 (375)
T TIGR00899 82 AWN----------------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFS 127 (375)
T ss_pred Hhc----------------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHH
Confidence 554 356677788888888877777888888888887665 5543 5
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 232 ~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
++.+...++|..++|.+++++.+..|||+.|++.++..++..++.++
T Consensus 128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 66777788999999999999998899999999887766555554443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=178.19 Aligned_cols=181 Identities=19% Similarity=0.223 Sum_probs=162.9
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 009195 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (540)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~ 142 (540)
..+..++.+..++++.+++++.-|.+... -.-.++.+|.+++..+++...+.+..+++.|+.|+|+||| .|++++.++
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv-~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG 104 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGV-LKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVG 104 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeH
Confidence 33455567889999999999999987664 4567889999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch
Q 009195 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (540)
Q Consensus 143 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~ 222 (540)
.++..++.+.+.++ ..++++.+.|.+.|+|.+.+.+..+++++|.||...
T Consensus 105 ~~iW~~Av~~~~fs----------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~-- 154 (493)
T KOG1330|consen 105 IFIWTLAVFASGFS----------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK-- 154 (493)
T ss_pred HHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh--
Confidence 99999999999887 568999999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHh
Q 009195 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 223 ~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~~~ 279 (540)
|++.++++|+++++|.++|.+++.++.+..+ |||+|++.+++.++..++.++.
T Consensus 155 ----Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 155 ----RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred ----hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence 9999999999999999999999999988877 9999999888876666655543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-16 Score=165.56 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=135.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 009195 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (540)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~ 147 (540)
.+.++.+++..++..++...+.+.++.|+. ++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 346788888888888888777788887776 6899999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++.+.+..+ .+...++++|++.|++.+...+.....+.+..++++ |
T Consensus 83 ~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~ 128 (381)
T PRK03633 83 AGCAGLGLM----------------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------R 128 (381)
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H
Confidence 888877765 457788899999999999988888788888888777 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccch
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw 258 (540)
++.+++++...++|..+||.+++++.+...|
T Consensus 129 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 129 GRLLAAYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999998765433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=9e-17 Score=173.20 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
....+.+..++..+....+. ...+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVN-VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 34455556666666654444 445567788999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+++..+ .+...++++|++.|++.+...+...+++.|.+|+++ |++
T Consensus 81 ~~~~~~~----------------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 126 (485)
T TIGR00711 81 SLLCGVA----------------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGR 126 (485)
T ss_pred HHHHhCc----------------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHH
Confidence 8888765 457788999999999999999999999999999888 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
++++++....+|..++|.+++++.++.+|++.|++.++..++..++..+..+
T Consensus 127 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~ 178 (485)
T TIGR00711 127 AMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILP 178 (485)
T ss_pred HHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999877766555554444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-17 Score=167.08 Aligned_cols=167 Identities=20% Similarity=0.262 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (540)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~ 154 (540)
++..++..+........++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4555666666666666666588999999999999999999999999999999999997 999999999999999855555
Q ss_pred HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 009195 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~ 234 (540)
++ .+...++++|++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 81 ~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~ 126 (352)
T PF07690_consen 81 FA----------------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL 126 (352)
T ss_dssp HH----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred hh----------------------------hhHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence 43 234588999999999999999999999999999988 99999999
Q ss_pred HHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 235 ~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~ 276 (540)
+...++|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 999999999999999999988899999999888877776643
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-16 Score=166.85 Aligned_cols=176 Identities=15% Similarity=0.095 Sum_probs=129.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHH-HHHHHHHH-----HHHHHHhHHHHHhhhccchHH
Q 009195 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSS-NAVNNFLG-----ISQASSVLGGFLADAYLGRYW 137 (540)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~-~~~~~~~~-----~~~~~~~~~G~lsD~~~GR~~ 137 (540)
...+++.....++..++..+....+. .+.+.+.++++.+..+.+ +..+.... +..++.++.|+++||+ |||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~ 87 (434)
T PRK15075 10 RESKARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRK 87 (434)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHH
Confidence 34556677777788888888886554 445578888998776543 33332222 2246788999999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 009195 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (540)
Q Consensus 138 ~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~ 217 (540)
+++++.+++.++.++++++.+...+. ......++++|++.|++.|...+....+++|.+|
T Consensus 88 ~l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p 147 (434)
T PRK15075 88 GLIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT 147 (434)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC
Confidence 99999999999998888752100000 0001246889999999999999989999999999
Q ss_pred CCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHh--------hhccchHHHHHHHHH
Q 009195 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGSAFGALAI 267 (540)
Q Consensus 218 ~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l--------~~~~gw~~~f~i~~i 267 (540)
+++ |++..+++....++|..+++.+++.+ .+..|||+.|++..+
T Consensus 148 ~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 148 PGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred ccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 998 99999998888788877777777665 246799999987543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-16 Score=162.86 Aligned_cols=173 Identities=12% Similarity=0.076 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH-HHHHHHHHhHHHHHhhhccchHHHHH-HHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIA-IFTTIYL 147 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~G~lsD~~~GR~~~i~-i~~~l~~ 147 (540)
..+..++..++..++...+.+.++.|+.+++|.+.++.+++.+.. ..+..++++++|+ +||+ ||||.++ .+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV 93 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence 456666668888888877888999999999999999999987665 4466666666666 9998 9988754 4555544
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++..+++++ .+...+++.+.+.+...+...+....+..|..++++ |
T Consensus 94 ~~~~~~~~~----------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 139 (393)
T PRK15011 94 LACTLFAWN----------------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------R 139 (393)
T ss_pred HHHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------c
Confidence 555555443 345555444444444445667777788888776554 4
Q ss_pred h--hHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 228 D--RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 228 ~--~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
. ...++.+.+.++|..++|.+++++.++.|||+.|++.++..++..+..+.
T Consensus 140 ~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 140 EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 3 33467788899999999999999999899999998877665555444443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-16 Score=161.41 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=143.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
.+|..+...+..++..+..+...+.+ +++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 45666666666666666655444443 456688999999999999999999999999999999998 9999999999888
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.++.+++..+ .+...+++.|++.|++.+...+....+..|.++.++
T Consensus 84 ~~~~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 129 (394)
T PRK11652 84 ILGTLVALFA----------------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------ 129 (394)
T ss_pred HHHHHHHHHH----------------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------
Confidence 8888877664 457788899999999998877777888889888776
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~ 276 (540)
|++..+++..+..++..++|.+++++.+..||++.|++.++..++..++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 130 LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999888899999998776655444333
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-16 Score=163.77 Aligned_cols=176 Identities=16% Similarity=0.116 Sum_probs=144.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+.+|+.+...++..+...+..+. .....+++.+++|++..+.+++.+...++..++.++.|+++||+ |||+++.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~ 90 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAA-MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSIL 90 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHH
Confidence 34455555555555555555543 34455667788999999999999999999999999999999998 99999999998
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.+++..+ .+...+++.+++.|++.+...+...++++|.+|++.
T Consensus 91 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 138 (398)
T TIGR00895 91 LFSVFTLLCALA----------------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF---- 138 (398)
T ss_pred HHHHHHHHHHHc----------------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh----
Confidence 888887777654 356778889999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~ 276 (540)
|++.+++++.+..+|..+++.+++++.+..||++.|++.++...+..++.
T Consensus 139 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 188 (398)
T TIGR00895 139 --RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLL 188 (398)
T ss_pred --hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHH
Confidence 99999999999999999999999999998999999988754444433333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=165.02 Aligned_cols=153 Identities=13% Similarity=0.059 Sum_probs=133.3
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 009195 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (540)
Q Consensus 91 ~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 170 (540)
...+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++.++
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~-------------- 80 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS-------------- 80 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh--------------
Confidence 345678889999999999999999999999999999999998 99999999999999988888776
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHH-HHH
Q 009195 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLV 249 (540)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p-~i~ 249 (540)
.+...++++|++.|++.+...+...++++|.+|+++ |++.+++.+...++|..++| .++
T Consensus 81 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 140 (379)
T TIGR00881 81 --------------TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVL 140 (379)
T ss_pred --------------hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHH
Confidence 457788899999999999999999999999999888 99999999999999999999 577
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 250 ~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
+.+.+..+|++.|++.+++.++..++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 141 FGIAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 77777789999998877665554444433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-15 Score=157.71 Aligned_cols=162 Identities=14% Similarity=0.056 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
.+.+....++..++...+...++ .+.+++|.+..+.+++.+.+.+...++.+++|+++||+ |||++++++.++..++.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAI-ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHH
Confidence 45566666776665544434344 34678999999999999999999999999999999998 99999999999998887
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
+.+... .+ .++.|+++|++.+...|...++++|.+|+++ |+++
T Consensus 83 ~~~~~~----------------------------~~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a 125 (393)
T PRK11195 83 LLMLFG----------------------------IH---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKA 125 (393)
T ss_pred HHHHHH----------------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 766553 22 2678999999999999999999999999888 9999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~ 272 (540)
.++.....++|..+||.+++++.+. .|+..+.+.+.+.+++
T Consensus 126 ~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 126 NGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 3766666555444333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-15 Score=157.38 Aligned_cols=179 Identities=8% Similarity=-0.048 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~ 147 (540)
|.++...+..++.....+.. +.+..++.+ ++|++.++.++..+++.+++.++.++.|++.||+ |.|+++.++.++..
T Consensus 34 r~l~~s~~~f~~~F~~w~~~-~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLF-SAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 45555444444444444433 334455544 8999999999999999999999999999999998 99999999999988
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
+..++++++... .. .+...+++.|++.|++ |+..+.....++++||+++ |
T Consensus 112 i~~~~~~~a~~~----~~-------------------~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------r 161 (462)
T PRK15034 112 IPCVWLGIAVQN----PN-------------------TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------Q 161 (462)
T ss_pred HHHHHHHHHHcc----cC-------------------CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------h
Confidence 888877764110 00 3578899999999998 6678889999999999998 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhh-----h-------------ccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQ-----M-------------EHGWGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~-----~-------------~~gw~~~f~i~~i~~~~~~~~~~~~ 279 (540)
+++++++....++|..+++++...+. . ..+|+.++++..+..+++.++.++.
T Consensus 162 G~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 162 GSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999986666677665555543322 2 2347777767666665555554443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-15 Score=157.26 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 78 EMAERMAYFGLSVNMVTF--MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (540)
Q Consensus 78 ~~~~~~~~~~~~~~~~~y--l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~ 155 (540)
..+..++++....+.|.+ +++++|.+..+.++..+++.++..++.+++|+++||+ |||+++.++.++..++.+++..
T Consensus 12 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~ 90 (401)
T PRK11043 12 AGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLW 90 (401)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433 6789999999999999999999999999999999998 9999999999888888777766
Q ss_pred hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHH
Q 009195 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (540)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~ 235 (540)
+ .+...+++.|++.|++.+...+...+++.|.+++++ +++.++...
T Consensus 91 ~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 136 (401)
T PRK11043 91 V----------------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIM 136 (401)
T ss_pred h----------------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHH
Confidence 4 357778889999999988877788889999999877 888888887
Q ss_pred HHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 236 LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 236 ~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
...++|..++|.+++++.+.+||++.|++..+..++..+..+.
T Consensus 137 ~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 137 PLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999998877766655544433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-16 Score=159.62 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=105.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCC
Q 009195 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 181 (540)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (540)
++....+.+..+..+|..+|+++.||++|++ |||+++...+++.+++.++++++.. -.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~---------------------~~ 138 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVG---------------------TT 138 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCC---------------------CC
Confidence 5566778899999999999999999999997 9999999999999999886665411 11
Q ss_pred ccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHH----HHHhHHHHHHHHHHHHhhhc--
Q 009195 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY----LSVTVGAIVAFTLVVYIQME-- 255 (540)
Q Consensus 182 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~----~~~~lg~~i~p~i~~~l~~~-- 255 (540)
+...-+.++...|+++|+|.|+=+|...+..+|....+. ||...+... ++.-.|+.++.++.+-+...
T Consensus 139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~ 212 (538)
T KOG0252|consen 139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN 212 (538)
T ss_pred CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence 111346788899999999999999999999999999888 888877633 33344444444443333211
Q ss_pred ---------cchHHHHHHHHHHHH
Q 009195 256 ---------HGWGSAFGALAIAMG 270 (540)
Q Consensus 256 ---------~gw~~~f~i~~i~~~ 270 (540)
.=||..|.+.++..+
T Consensus 213 ~~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 213 GPSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHH
Confidence 128888777665443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=173.25 Aligned_cols=268 Identities=34% Similarity=0.511 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhcc
Q 009195 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ 215 (540)
Q Consensus 136 ~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~ 215 (540)
+|+++++.+++++|.+++.+++...... .+.+...++++++++++|.|+..+++.++++||
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~-------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq 61 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLP-------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ 61 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhh-------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 4889999999999999988876533221 124567899999999999999999999999999
Q ss_pred CCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccccccc-CCCCCchh
Q 009195 216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT 294 (540)
Q Consensus 216 ~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 294 (540)
+++++ ...|.++|++||++.|+|+.+++.+.+++++++||.++|+++.+.+++++++++..++.+++. ++.++++.
T Consensus 62 ~~~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~ 138 (372)
T PF00854_consen 62 YDEDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT 138 (372)
T ss_dssp SSTTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred hcccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence 99773 233999999999999999999999999999999999999999999999999999999999888 67777777
Q ss_pred H-HHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCCchhhHHHhhhhccccCCCCCCc-ccchhhHHHH
Q 009195 295 R-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEV 372 (540)
Q Consensus 295 ~-~~~v~~~~~k~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 372 (540)
+ ...++....+++....|+...+ +.+.....+ .... ........ +........ ..|. .+..++++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-----~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~ 207 (372)
T PF00854_consen 139 NFIKLVLVAAFKKRKLAVPKGSSW-LDWALFQYS-ERSI-----FGIIVFIR-AAVIFFPEI---FFWALFCQVQRVEEL 207 (372)
T ss_dssp --SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHHC-CCCC-----CCCCCHHH-HHHHHCCCH---HHHTTTSSTTTHHHC
T ss_pred hhHHHHHHHHHHHhhcccccchHH-HHHhhhhhh-hhhh-----hhhhhhcc-chhhhhhhh---hhcccCCccceeeee
Confidence 7 5555556666665555443333 221100000 0000 00000011 011000000 0010 1345567788
Q ss_pred HHHHhhhhhhhhhHHHHHHhhhhhhHHHHHHhhhcccc----------------------------------CCCCCCCh
Q 009195 373 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM----------------------------------GHPRGASQ 418 (540)
Q Consensus 373 k~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~----------------------------------~~~~~~~~ 418 (540)
+.+.+.++.+....+++..+.+.......+...+|..+ +++...+.
T Consensus 208 k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~ 287 (372)
T PF00854_consen 208 KALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSP 287 (372)
T ss_dssp CHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------
T ss_pred eeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccchh
Confidence 88889999998888888888888887777766664322 44456778
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 009195 419 LQRVGIGLAVSILSVIWA 436 (540)
Q Consensus 419 ~~~~~~g~~~~~~~~~~~ 436 (540)
..|+++|++++.++++++
T Consensus 288 ~~k~~~G~~~~~~~~~~~ 305 (372)
T PF00854_consen 288 PQKFGIGMVFAILAMFVA 305 (372)
T ss_dssp HHHHHHH-HHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 888999988888887765
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=173.09 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=127.2
Q ss_pred HhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccC
Q 009195 98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG 177 (540)
Q Consensus 98 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (540)
+..+.+.....+..+++.+|..+|++++|++||++ |||++++++.++.+++.++.+++
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a--------------------- 168 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA--------------------- 168 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 45667788889999999999999999999999995 99999999999999999888887
Q ss_pred CCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 009195 178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (540)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g 257 (540)
.+...+++.|++.|++.++...+...+++|+++++. |+...++ ......++.+++.+++++.. +
T Consensus 169 -------~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~ 232 (521)
T KOG0255|consen 169 -------PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--D 232 (521)
T ss_pred -------CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--h
Confidence 678999999999999999999999999999999999 9999999 77788888899999999887 7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 009195 258 WGSAFGALAIAMGISNML 275 (540)
Q Consensus 258 w~~~f~i~~i~~~~~~~~ 275 (540)
||+.+++..+..++.++.
T Consensus 233 Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 233 WRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988877666555
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-15 Score=153.06 Aligned_cols=155 Identities=17% Similarity=0.238 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 009195 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (540)
Q Consensus 88 ~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~ 167 (540)
..+.++.+. +++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++..+
T Consensus 10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~----------- 76 (377)
T PRK11102 10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA----------- 76 (377)
T ss_pred HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 345555555 57999999999999999999999999999999998 99999999999999888888765
Q ss_pred cccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHH
Q 009195 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (540)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~ 247 (540)
.+...+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+....+|..++|.
T Consensus 77 -----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~ 133 (377)
T PRK11102 77 -----------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPI 133 (377)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999888 999999999999999999999
Q ss_pred HHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
+++++.+..+|++.|++.++..++..++...
T Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 134 IGGWLLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999889999998877766555444433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=159.32 Aligned_cols=178 Identities=8% Similarity=-0.143 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..+......++..++++.+.++++.|+++++|++..+.+++.+.+.++..+++++.|+++||+ |||++++++..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLVL 89 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 456666677777777777889999999999999999999999999999999999999999998 9999998876665544
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHH-HHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML-YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
...+...... .... ....+.++.++..+...........++.+... ..++
T Consensus 90 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g 140 (420)
T PRK09528 90 FGPFFIYVFA-------------------------PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSG 140 (420)
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhcc
Confidence 3322211000 0000 01122222233333222222222223222111 1156
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
..++..+...++|..++|.+++++.+ .+|++.|++.++..++.+++.+.
T Consensus 141 ~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 141 FEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred ccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence 66677777789999999999998876 48999998877766665555444
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-14 Score=173.65 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~--~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~ 147 (540)
.....++..++..+...+....+..++...++.+. ...+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus 10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~~ 88 (1146)
T PRK08633 10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFEV 88 (1146)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHHH
Confidence 44455555666555554555555666666677654 3468888999999999999999999998 99999999987776
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++.++..++... .+...++++|++.|++.+...+...++++|.+|+++ |
T Consensus 89 ~~~~~~~~~~~~-------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r 137 (1146)
T PRK08633 89 GLTLLIVLAYYL-------------------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------L 137 (1146)
T ss_pred HHHHHHHHHHHH-------------------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------c
Confidence 666555443210 357788999999999999999999999999999988 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~ 255 (540)
+++++++..+.++|.++|+.+++++...
T Consensus 138 ~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 138 SRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998765
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-14 Score=149.45 Aligned_cols=157 Identities=7% Similarity=-0.117 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH-HHHHHH-
Q 009195 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YLAGLT- 151 (540)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l-~~i~~~- 151 (540)
+.+..++..+++-...++++.|++ ++|++..+.+++.+.+.++..++.++.|+++||+ ||++.......+ ..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~~ 86 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAAA 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH
Confidence 444455555555456677778884 6899999999999999999999999999999998 985433222111 111111
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~ 231 (540)
.+..+ .+.+.+++.|++.+.+.+...+...++..|. .++ |++.+
T Consensus 87 ~~~~~----------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~ 130 (382)
T TIGR00902 87 FSAGA----------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDY 130 (382)
T ss_pred HHHhh----------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCc
Confidence 11121 4577888889989999888888877776543 234 78888
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 009195 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (540)
Q Consensus 232 ~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~ 268 (540)
+......++|..++|.+++++.+++||+..|++.++.
T Consensus 131 g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 131 GKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 8988899999999999999999999999998876554
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-14 Score=146.92 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=148.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+.++|.++...+......+.. .+.+.+.+++++++|+|..|.++++.+-.+...+.+++-|++.||+ |-|++..++++
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW-~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVW-TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence 445556665555544444444 4556677888899999999999999999999999999999999997 98888899988
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+.++-.+.++++... .+.+.+++...+.|++. +..++..++++..||++.
T Consensus 88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~---- 137 (417)
T COG2223 88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEK---- 137 (417)
T ss_pred HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhccc-ceehcccccccccCChhh----
Confidence 888877777776431 23467888888999984 456788889999999999
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc---hHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g---w~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
+|.+.+++. ..|+|..+..+++.++....| |+....+..+.++++.+++++..+
T Consensus 138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999998 999999999999999998888 999988888888887777666443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-14 Score=151.78 Aligned_cols=177 Identities=14% Similarity=0.079 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
+..+....++.+++.......++ .+..++.-|+...+++.....+-..+..+++|.++||+ .|||+++.+.++..+..
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~-wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALA-WLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVA 89 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHH
Confidence 34444555566666643333333 33445677888889999999999999999999999998 99999999988877665
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
+.+++.... .. .+.+.+++..++.|++.+...|...+++.|++|+++ ...+
T Consensus 90 ~~L~~l~~~----~~-------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A 140 (524)
T PF05977_consen 90 LLLAVLAFF----GL-------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAA 140 (524)
T ss_pred HHHHHHHHh----Cc-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHH
Confidence 555543221 10 356778888899999999999999999999999988 8899
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
.++.....|+.-.+||.++|.+....|-.+.|.+.++..++.++++..
T Consensus 141 ~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~ 188 (524)
T PF05977_consen 141 NALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR 188 (524)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888898888776665544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-14 Score=152.13 Aligned_cols=178 Identities=10% Similarity=-0.103 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.+|......++...+...+.++++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+.++.+.+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 467777788888888888889999999999999999999999999999999999999999998 9999998877666554
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
......... .+. ........+++++++.|++.+...+....+..|..+ + ++.
T Consensus 82 ~~~~~~~~~----~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~ 133 (396)
T TIGR00882 82 FAPFFIYVF----GPL----------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNF 133 (396)
T ss_pred HHHHHHHHh----hhH----------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------ccc
Confidence 443221100 000 000123345566788888888888887777766432 2 334
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
.++......++|..++|.+++.+.+ .+|+..|++.+++.++..++.+
T Consensus 134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 5566667788999999999998755 5899999888776665554443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-14 Score=150.10 Aligned_cols=156 Identities=13% Similarity=-0.032 Sum_probs=125.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+++...++.+.+..++..+........ .+.+++++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~ 99 (438)
T PRK10133 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 334456666666666666666544444 4456899999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
++.++.+++..... . .+...++++|++.|+|.|...+...+++.|..++++
T Consensus 100 ~~~~~~~l~~~~~~------a-------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~---- 150 (438)
T PRK10133 100 LYALGAALFWPAAE------I-------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_pred HHHHHHHHHHHHHh------c-------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh----
Confidence 99999887642211 0 467889999999999999999999999999766655
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhh
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~ 253 (540)
|...+++++....+|..++|.+++.+.
T Consensus 151 --~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666678888888888888888876543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-14 Score=151.84 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHHH-HHHH
Q 009195 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWT-IAIF 142 (540)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~----~GR~~~-i~i~ 142 (540)
+|+.+.+++..+...+..+.....++.++. +.|.+..+.+.. +..... +++.+++|+++||+ +|||+. +.++
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~ 87 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLAT 87 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHH
Confidence 334566666667777777666677777765 559998888876 222222 36889999999994 288886 5566
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch
Q 009195 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (540)
Q Consensus 143 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~ 222 (540)
.++..++...+++.. |. .+...+.+.+++.+++.+...+...++.+|.+|+++
T Consensus 88 ~i~~~~~~~~~a~~~------~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~-- 140 (491)
T PRK11010 88 QLLLLVAIAAMGFLE------PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE-- 140 (491)
T ss_pred HHHHHHHHHHHHHcC------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh--
Confidence 666666666655431 11 356778888899999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHH
Q 009195 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 223 ~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~-~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
|+++.++...+..+|..+++.+++++.+ ..|||..|++.++..++..+..+
T Consensus 141 ----rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 ----RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 46999999988776665544433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-14 Score=148.67 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
.+...+..++.....+...+.++.++++++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 44566666666777777777777789999999999999999999999999999999999998 99999999999999998
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
+++.++ . +...++++|++.|++.+. .....++++|.+|+++ |++
T Consensus 82 ~~~~~~----------------------------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~ 126 (366)
T TIGR00886 82 LWAGLA----------------------------VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGT 126 (366)
T ss_pred HHHHHH----------------------------hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhH
Confidence 888775 4 577888999999999665 4566789999999888 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhh----------ccchHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA 264 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~----------~~gw~~~f~i 264 (540)
..+++....++|..+++.+++.+.. +.+||+.|++
T Consensus 127 ~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 127 ALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 9999887777787777777765543 2479999844
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-14 Score=168.30 Aligned_cols=146 Identities=14% Similarity=0.056 Sum_probs=111.7
Q ss_pred HHHhhCCCh-HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH--HHHHHHHhhhccccCCCCCccccc
Q 009195 96 MFYVMHKSF-ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA--GLTGITLCATMKVFMPNQDNCDRI 172 (540)
Q Consensus 96 l~~~lg~~~-~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i--~~~~~~~~~~~~~~~~~~~~~~~~ 172 (540)
+....+.+. ...+++.+++.+...++.+++|+++||+ |||+++.....+.++ ...+..+. .
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~-~-------------- 105 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFH-L-------------- 105 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHH-H--------------
Confidence 333444433 4467788889999999999999999998 999986442222222 21111111 0
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHh
Q 009195 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (540)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l 252 (540)
.+.+.++++|+++|++.+...+...+++.|++++++ |+.++++.+.+.++|.++||.+++++
T Consensus 106 ------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l 167 (1140)
T PRK06814 106 ------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLA 167 (1140)
T ss_pred ------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999988 99999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHHHHHH
Q 009195 253 QMEHGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 253 ~~~~gw~~~f~i~~i~~~~~~~~ 275 (540)
....+|++.|.+.++..++++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~ 190 (1140)
T PRK06814 168 TISGNFVILVALLMGIAVLGWLA 190 (1140)
T ss_pred HhccccHHHHHHHHHHHHHHHHH
Confidence 99999999884444444444433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-14 Score=146.17 Aligned_cols=165 Identities=18% Similarity=0.209 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhC--CChHHHHHHHHH--HH---HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 81 ERMAYFGLSVNMVTFMFYVMH--KSFADSSNAVNN--FL---GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (540)
Q Consensus 81 ~~~~~~~~~~~~~~yl~~~lg--~~~~~~~~~~~~--~~---~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~ 153 (540)
+.+..+.+. +...++.++.. .++++.+...+. +. ++..++.++.|+++||+ |||+++.++.++..++.+++
T Consensus 5 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 5 EWFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred hHHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHH
Confidence 344444333 34555555544 334444433332 22 33346789999999998 99999999999999988888
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 009195 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~ 233 (540)
+++.+.... .......++++|++.|++.+...+....+++|.+|+++ |++..++
T Consensus 83 ~~~~~~~~~--------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~ 136 (394)
T TIGR00883 83 GLLPSYATI--------------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSF 136 (394)
T ss_pred hhCCChhhh--------------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHH
Confidence 775210000 00112357889999999999999999999999999988 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHhh--------hccchHHHHHHHHHHHHHHH
Q 009195 234 FYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGISN 273 (540)
Q Consensus 234 ~~~~~~lg~~i~p~i~~~l~--------~~~gw~~~f~i~~i~~~~~~ 273 (540)
.+.+..+|..+++.++..+. +..+||+.|.+.++..+++.
T Consensus 137 ~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 137 QQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 99999999999988776653 35689999987666554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-14 Score=142.21 Aligned_cols=160 Identities=12% Similarity=-0.001 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 009195 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (540)
Q Consensus 79 ~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~ 158 (540)
.+.-...-.....+..-+....|.+.-+..++......++.+++..+|.++|++ |||+...+......+.-.+-..+
T Consensus 87 wmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s-- 163 (528)
T KOG0253|consen 87 WMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS-- 163 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC--
Confidence 333333334445555566777888888999999999999999999999999998 99999888776555544443332
Q ss_pred ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 009195 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (540)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~ 238 (540)
.|...+++.|.+.|+|.|+ .|...++-.|..|... |....-.. ...
T Consensus 164 --------------------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~w 209 (528)
T KOG0253|consen 164 --------------------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFW 209 (528)
T ss_pred --------------------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHH
Confidence 4678899999999999999 8999999999999887 77766554 445
Q ss_pred hHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 239 ~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~ 275 (540)
.+|.++...+.-.+..+.||||-.........++.++
T Consensus 210 aig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f 246 (528)
T KOG0253|consen 210 AIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARF 246 (528)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH
Confidence 6777777777766677889998776655444444333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-15 Score=158.35 Aligned_cols=182 Identities=13% Similarity=0.034 Sum_probs=133.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+++|+.........++..+.+|++..+++.|+++.+|++..+..+......++..++.+++|+++||+ |||+++.++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~ 324 (490)
T PRK10642 246 TKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSV 324 (490)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 34555555555555667788889999999999999999988888888888888999999999999998 99999888876
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.+++..... . .+...+++++++.|++.++..+....+++|.+|++.
T Consensus 325 ~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~---- 375 (490)
T PRK10642 325 ALFVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI---- 375 (490)
T ss_pred HHHHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc----
Confidence 55444333222111 0 235567778888888877777778888999999999
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~~ 278 (540)
|++++++.+....+++.++|.+.+++.+..+ |+.++++..+..+++++..++
T Consensus 376 --Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 376 --RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999998444455667889999999887654 676666555555444444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-13 Score=142.03 Aligned_cols=161 Identities=14% Similarity=0.003 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-HHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGL 150 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR-~~~i~i~~~l~~i~~ 150 (540)
..+.+..++...++-...++++.|+++++|++..+.+++.+.+.++..++++++|+++||+ || |+++.++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Confidence 4456666666666666678999999999999999999999999999999999999999997 65 778888777776666
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhh--------ccCCCCCch
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA--------DQFDERSKD 222 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~--------d~~~~~~~~ 222 (540)
.+..+. .+...+++.+++.|++.+...+...+... |......
T Consensus 84 ~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~-- 133 (418)
T TIGR00889 84 FFAAQV----------------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP-- 133 (418)
T ss_pred HHHHHh----------------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC--
Confidence 665543 34666777888888877666555444321 2222122
Q ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (540)
Q Consensus 223 ~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~ 274 (540)
|.+.++ .+|.+++|.+++.+.....|. +|++.++..++..+
T Consensus 134 ----~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~ 174 (418)
T TIGR00889 134 ----PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGV 174 (418)
T ss_pred ----Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHH
Confidence 444443 378888888888874433354 35555554444433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-13 Score=147.88 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=123.5
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 009195 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (540)
Q Consensus 90 ~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 169 (540)
.....++.+++|-+ ....|+.+.+.++..+..++.|.|||.+ |||..++++.++.++|.+.++.+
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA------------- 128 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA------------- 128 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC-------------
Confidence 44567888899886 4567788889999999999999999976 99999999999999999999876
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHH
Q 009195 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (540)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~ 249 (540)
++...++++..+.|+|.|... .....++|..|.+. |..+..+..+...+...+++.++
T Consensus 129 ---------------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia 186 (599)
T PF06609_consen 129 ---------------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA 186 (599)
T ss_pred ---------------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence 678899999999999977665 45666899999988 88877776666556666777777
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 250 VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 250 ~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
..+..+.+|||.|++..+...+++++.++
T Consensus 187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 187 QLFAAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 77766778999999998877666554433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-13 Score=140.93 Aligned_cols=155 Identities=8% Similarity=-0.021 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH----HHHHHHHHHHHHHHHHHH
Q 009195 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGIT 154 (540)
Q Consensus 79 ~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~----~~i~i~~~l~~i~~~~~~ 154 (540)
++..++...+.++++.|++ ++|.+..+.+++.+++.++..++.+++|+++||+ ||+ +.+.+...+.. +.+.
T Consensus 14 ~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~---~~~~ 88 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA---VAFW 88 (382)
T ss_pred HHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH---HHHH
Confidence 3344445556677888885 5899999999999999999999999999999998 984 33222221111 1111
Q ss_pred HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHH
Q 009195 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~ 234 (540)
.. . ++.+.+++.|++.|++.+...+...++..+.. ++ |++.++..
T Consensus 89 ~~--------~-------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~~ 133 (382)
T PRK11128 89 FG--------A-------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGKV 133 (382)
T ss_pred Hh--------c-------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcchH
Confidence 11 0 35777888999999998888888777777752 23 66667777
Q ss_pred HHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (540)
Q Consensus 235 ~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~ 273 (540)
....++|..+||.+++++.+++|||..|++.++..++..
T Consensus 134 ~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 134 RLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 777789999999999999999999999987765544433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-13 Score=154.22 Aligned_cols=208 Identities=14% Similarity=0.088 Sum_probs=152.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
..+++.+...+....+......+......+.+.++++++.++.+++.+.+.++..++.++.|+++||+ |||+.+.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l 106 (633)
T TIGR00805 28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA 106 (633)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence 34555554444444444444456666677788899999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhcccc--------------CCCCCccccccc-------ccCCCCCcc--chhHHHHHHHHHHHHHhh
Q 009195 145 IYLAGLTGITLCATMKVF--------------MPNQDNCDRISQ-------LLGSCEPAK--SWQMLYLYTVLYITGFGA 201 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~l~g~g~ 201 (540)
++.+|.++++++.....- ..+.+.|...+. ....|.... ......++++|++.|+|.
T Consensus 107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~ 186 (633)
T TIGR00805 107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA 186 (633)
T ss_pred HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence 999999998875311000 000112311000 001232222 123567789999999999
Q ss_pred cccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhcc----------------------chH
Q 009195 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH----------------------GWG 259 (540)
Q Consensus 202 g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~----------------------gw~ 259 (540)
+...+...+++.|.+|+++ |+..+++++.+..+|+++|+++++++.+.+ +|+
T Consensus 187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw 260 (633)
T TIGR00805 187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW 260 (633)
T ss_pred CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence 9999999999999999998 999999999999999999999999887542 277
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 009195 260 SAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 260 ~~f~i~~i~~~~~~~~~~~~ 279 (540)
.+|++.+++.++..+.+++.
T Consensus 261 l~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 261 IGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 77877776665555444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=152.09 Aligned_cols=178 Identities=22% Similarity=0.242 Sum_probs=147.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chHHHH-HHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIY 146 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~-GR~~~i-~i~~~l~ 146 (540)
+.+|.+.++.++..+..|++..+.|.|+.+..|++..++.+..+.|..+...|++++||+|||++ |||... ++++++.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999998 777554 4555555
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
++..+.+..+ |+ .+..+..+..+++|+...++...+.....|..|++.
T Consensus 332 ~~~~~~~w~~-------~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------ 379 (448)
T COG2271 332 TASLVLYWLA-------PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------ 379 (448)
T ss_pred HHHHHHHHcC-------CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------
Confidence 5555555443 22 456777788899999999999899999999999888
Q ss_pred hhhHHHHHHHHHhH-HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 227 R~~~~~~~~~~~~l-g~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
-|++.++..+...+ |+.++....+++.+.+||...|.+..+..+++.+++..
T Consensus 380 aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 380 AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 67777776666656 88888888899989899999999887777666665544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-13 Score=140.44 Aligned_cols=172 Identities=11% Similarity=0.021 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
++.+...-++..+.. ++...+.+.+++++|.+..+.+++.+.+.++..++.++.|++.||+ |||+++.++.++..++.
T Consensus 5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 444444444444444 4555556777999999999999999999999999999999999998 99999999999999988
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
+++..+.. . .+...++++|++.|+|.|...+...+++.+..|+++ |++.
T Consensus 83 ~l~~~~~~------~-------------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~ 131 (410)
T TIGR00885 83 FLFWPAAE------I-------------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRR 131 (410)
T ss_pred HHHHHHHh------h-------------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHH
Confidence 77654321 0 357788899999999999999999999999998887 8888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhh--------------------------ccchHHHHHHHHHHHHHHHHH
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~--------------------------~~gw~~~f~i~~i~~~~~~~~ 275 (540)
.++.+...++|..++|.+++.+.. ..+||++|.+.++..++..++
T Consensus 132 ~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 132 LNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888999999999999887742 236999998776655444333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-12 Score=138.30 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHH-HHHHHHHHHHHHHH
Q 009195 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAGLT 151 (540)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~----~GR~~-~i~i~~~l~~i~~~ 151 (540)
..+.+.+.+.-....+|.|+.+ .|++.++.+++..+... .+..+++|+++||+ +|||| .+.++.++..+...
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 3344445554455667888875 59999999988666655 68889999999996 27765 67777777776666
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~ 231 (540)
.+++.. +. .+...+++..++.+++.+...+...++++|.+|+++ |+++.
T Consensus 84 ~l~~~~------~~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~ 132 (402)
T PRK11902 84 AMAFCP------PH-------------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGA 132 (402)
T ss_pred HHHhcC------cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHH
Confidence 655531 11 245556666667788888888999999999999988 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHH
Q 009195 232 NFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 232 ~~~~~~~~lg~~i~p~i~~~l~~~-~gw~~~f~i~~i~~~~~~~~ 275 (540)
++...+..+|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus 133 ~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 133 AVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 998888999999999999988875 49999999877766554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=143.58 Aligned_cols=143 Identities=16% Similarity=0.136 Sum_probs=120.4
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 009195 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (540)
Q Consensus 91 ~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 170 (540)
.+.+.+.+++|++.++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+ .+
T Consensus 21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~-------------- 84 (355)
T TIGR00896 21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA-------------- 84 (355)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh--------------
Confidence 345567789999999999999999999999999999999998 99999999988877777665 32
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHH
Q 009195 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (540)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~ 250 (540)
.+...+++.|++.|++.+...+..+....|.+| ++ |++.+++++.+.++|..+++.+++
T Consensus 85 --------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~ 143 (355)
T TIGR00896 85 --------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATV 143 (355)
T ss_pred --------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677889999999999888888888888886 46 899999999999999999999998
Q ss_pred Hhhhcc--chHHHHHHHHHHHH
Q 009195 251 YIQMEH--GWGSAFGALAIAMG 270 (540)
Q Consensus 251 ~l~~~~--gw~~~f~i~~i~~~ 270 (540)
++.+.. +||+.|.+.++..+
T Consensus 144 ~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 144 PLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHhhhhhHHHHHHHHHHHHH
Confidence 887765 39988876655433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=146.93 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHH-HHHHHHHHHHHHHHHHH
Q 009195 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT 154 (540)
Q Consensus 79 ~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~-~i~i~~~l~~i~~~~~~ 154 (540)
+..++....+..+++.|+++.+|++..+++++.++..+...+..|+.|+++||. +|||| .++++.++..++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 444555556677889999999999999999999999999999999999999984 48755 56677777777776665
Q ss_pred HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC-CCCchhhhhhhhHHHH
Q 009195 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLDRFFNF 233 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~-~~~~~~~~~R~~~~~~ 233 (540)
.... .. .......+++.+++.+++.+.......++.+|+.+ +++ |++..++
T Consensus 89 ~~~~---~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~ 140 (437)
T TIGR00792 89 TTPD---FS-------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTF 140 (437)
T ss_pred hCCC---CC-------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHH
Confidence 4311 00 00234556667778888888877778888999885 344 8888888
Q ss_pred HHHHHhHHHHHHHHHHHHhh-------hccchHHHHHHHHHHHHHHHHHHHH
Q 009195 234 FYLSVTVGAIVAFTLVVYIQ-------MEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 234 ~~~~~~lg~~i~p~i~~~l~-------~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
.....++|..+++.+.+.+. +..+|++.+.+.+++.++..++.+.
T Consensus 141 ~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 192 (437)
T TIGR00792 141 RRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFF 192 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888777766655543 2457999888777766555544433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-12 Score=136.33 Aligned_cols=197 Identities=12% Similarity=0.065 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhh----ccchHHHHHHH-HH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA----YLGRYWTIAIF-TT 144 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~----~~GR~~~i~i~-~~ 144 (540)
.++.+....+...+++-...++++.|+ +.+|.+....+++..+..+...+..++.|++||| + ||||.++++ .+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence 445555556666666655666666665 6899999999999999999999999999999995 6 999998875 44
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
...++.++++.+.....+... . ..+.........+.++..+..++.....+...++++|++|+++++
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~~----------~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~-- 149 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFGD----------N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR-- 149 (477)
T ss_pred HHHHHHHHHHhCchhhhhccc----------c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH--
Confidence 455555555544221100000 0 000000011133444555566777778888899999999988621
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHh--hhc-------------cchHHHHHHHHHHHHHHHHHHHHhcccc
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYI--QME-------------HGWGSAFGALAIAMGISNMLFFIGTPLY 283 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l--~~~-------------~gw~~~f~i~~i~~~~~~~~~~~~~~~~ 283 (540)
++.+.++.+...++|..+|+.++++. .+. .+.++.|++.+++.++..++..+..++.
T Consensus 150 --~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 150 --TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 35788889999999999999988865 221 1578889988887777766665554443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.8e-13 Score=131.98 Aligned_cols=116 Identities=16% Similarity=0.075 Sum_probs=104.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCc
Q 009195 103 SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182 (540)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (540)
+..-++.+-+.|.+...+.++++|.+|||+ |||+++++|.+...+.+++++.+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S-------------------------- 118 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS-------------------------- 118 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 445678999999999999999999999998 99999999999999988888876
Q ss_pred cchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 009195 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (540)
Q Consensus 183 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~ 254 (540)
.|+..+.++|++.|+.-|- ...+-++++|.+++++ |+.+++....+..+|..+||.|++++..
T Consensus 119 --~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 119 --RNFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5676777789999999876 4677899999999988 9999999999999999999999999987
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-13 Score=137.82 Aligned_cols=172 Identities=12% Similarity=0.026 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH-HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
....+++-.|+..+-- ..+++.+|+.+++|++.++ .+.+.+.+..++.++.+++|+++||+ |-|+++.++.+...+
T Consensus 28 ~~~~lC~fGF~~e~R~--n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl 104 (511)
T TIGR00806 28 LVLYLCFYGFMAQFRP--GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVC 104 (511)
T ss_pred HHHHHHHHHHHHHhhc--hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 3333444444443332 3456677999999999999 99999999999999999999999998 999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
..+++.++ .+...+.+.|++.|++.|+.. ....++..++|+++ |+
T Consensus 105 ~t~L~~fa----------------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ 149 (511)
T TIGR00806 105 VWLLLLLG----------------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQ 149 (511)
T ss_pred HHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HH
Confidence 98888886 467889999999999999999 99999999999988 99
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHH---HHHHHHHHHHHHHHHhc
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG---ALAIAMGISNMLFFIGT 280 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~---i~~i~~~~~~~~~~~~~ 280 (540)
++.+++..+..+|.++++++++++ ..+||++-+. +......+++++.++.+
T Consensus 150 ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 150 RAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999994 4678987554 45555566666655543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-12 Score=135.96 Aligned_cols=175 Identities=15% Similarity=0.086 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSV---NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~---~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
|.++++.|+.++..+++.. .+-..++++++.+..+.+++.++......+..|+.+.+.||+ |.|.+.+.+.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 5556666666666655432 345567889999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHH-HHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
|+++.+++ .+.+.+++.. ++.|+|.|.........++..|++ . |
T Consensus 124 g~~lssF~----------------------------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------R 168 (509)
T KOG2504|consen 124 GLLLSSFA----------------------------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------R 168 (509)
T ss_pred HHHHHHHH----------------------------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------H
Confidence 99999887 4566666554 789999999998888888877774 3 7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~ 282 (540)
+.+.++-..+..+|..+-|.+..++.+.+|||..+++...+.+-..+.....++.
T Consensus 169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~ 223 (509)
T KOG2504|consen 169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPL 223 (509)
T ss_pred HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7888777777888888888999999999999999988777775555555555543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-11 Score=132.59 Aligned_cols=177 Identities=8% Similarity=-0.011 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTT 144 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~G-----R~~~i~i~~~ 144 (540)
....+....+.+.+. +.+...+..++++++|++.++.+...+...+...+-++ +|+++||+ + ||+.++++.+
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL 103 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence 334444466777777 67777788899999999999998888888888888765 99999998 6 6777777765
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+.. ......++.. + .......+.+++.+++.+.......++..|..+ ++++
T Consensus 104 l~~-~~~~~~l~~~-----~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~-- 154 (468)
T TIGR00788 104 LGS-AILYGLLPGK-----V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS-- 154 (468)
T ss_pred HHH-HHHHHhcccc-----c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC--
Confidence 542 1111222100 1 123334446788999999999999999999998 4321
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~ 279 (540)
.++...++.+...++|..+++.+++++.+..+|+..|++.++..++..+...+.
T Consensus 155 -~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 155 -AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred -cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc
Confidence 134455566666789999999999999999999999998887776664443433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=139.74 Aligned_cols=177 Identities=16% Similarity=0.078 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
+.+|.+.+..++....++++..++|.|+++.+|++..++++..+...++..++.+++|+++||+ |||+.+.+...+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 3577777888888888888888999999999999999999999999999999999999999998 998877665444443
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
+...+.+... .+....++.+++.|++..+..........|.+|++. |+
T Consensus 337 ~~~~~~~~~~--------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g 384 (467)
T PRK09556 337 IFTLGVYQHA--------------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IG 384 (467)
T ss_pred HHHHHHHHhc--------------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HH
Confidence 3322222100 234445566777776554444444466779999988 99
Q ss_pred hHHHHHHHHHhH-HHHHHHHHHHHhhh------------ccchHHHHHHHHHHHHHHHHHHHH
Q 009195 229 RFFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 229 ~~~~~~~~~~~l-g~~i~p~i~~~l~~------------~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
++.++.+...++ |+.++|.+.|++.+ ..||+..|++..++.+++.+..++
T Consensus 385 ~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 385 VANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999888886 77999999999999 578999998887777766555443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=131.72 Aligned_cols=152 Identities=13% Similarity=0.058 Sum_probs=136.0
Q ss_pred hhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCC
Q 009195 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (540)
Q Consensus 99 ~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (540)
.++-++++.+++.....+...+..++.|.+.||+ |+|-.++++.++.....+++++.
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg---------------------- 156 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG---------------------- 156 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc----------------------
Confidence 4566788999999999999999999999999998 99999999999999999998885
Q ss_pred CCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccch
Q 009195 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (540)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw 258 (540)
.+..+++++|.++|+|.++...+..++++|.||++.. |++.+++.--...+|-.+||.++|.+.+..|.
T Consensus 157 ------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk 225 (464)
T KOG3764|consen 157 ------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGK 225 (464)
T ss_pred ------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCC
Confidence 4678899999999999999999999999999998774 89999998888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Q 009195 259 GSAFGALAIAMGISNMLFFIGTPLYR 284 (540)
Q Consensus 259 ~~~f~i~~i~~~~~~~~~~~~~~~~~ 284 (540)
+.+|.+.+++.++-..+-++..+..+
T Consensus 226 ~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 226 SAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHheeCccc
Confidence 99999999888777766666554443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-11 Score=123.21 Aligned_cols=136 Identities=16% Similarity=0.105 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 009195 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (540)
Q Consensus 87 ~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~ 166 (540)
.....+.+++++.++.+..+++++...+..++.+.++..|++.+|+ |+|+.++++..++++|..+..-++..
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~~------- 101 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAASS------- 101 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhhh-------
Confidence 4556678899999999999999999999999999999999999998 99999999999999999888655321
Q ss_pred CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHH
Q 009195 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (540)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p 246 (540)
.++..++++.++.|.|.+.......++++.+.+++. -.+-+++.+....+|+.++|
T Consensus 102 ------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp 157 (422)
T COG0738 102 ------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGP 157 (422)
T ss_pred ------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHH
Confidence 568889999999999999999999999999999865 55556677777889999999
Q ss_pred HHHHHhhh
Q 009195 247 TLVVYIQM 254 (540)
Q Consensus 247 ~i~~~l~~ 254 (540)
.+++++..
T Consensus 158 ~~g~~lil 165 (422)
T COG0738 158 LLGSSLIL 165 (422)
T ss_pred HHHHHHHH
Confidence 99988766
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-12 Score=132.78 Aligned_cols=172 Identities=11% Similarity=0.080 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~ 151 (540)
+..+...++....++....+++.|+++++|++..+.+.+.+...++..++.+++|+++||+ |||+.+..+.+...+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~ 297 (393)
T PRK15011 219 LLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYA 297 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 3333333444444555566788999999999999999888877777888899999999997 999988777655554433
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~ 231 (540)
.+... .+...+++.+++.+++.|...+....+..|.+|+ . |+++.
T Consensus 298 ~~~~~----------------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~ 342 (393)
T PRK15011 298 GMLMA----------------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSAT 342 (393)
T ss_pred HHHHH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHH
Confidence 33222 2345556677777777776666777788898874 4 78899
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 232 ~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~ 279 (540)
++++...++|..++|.+++++.+..||+..|++..++.++++++.+..
T Consensus 343 ~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 343 TLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 998888899999999999999998899999988777777766665543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-10 Score=117.19 Aligned_cols=173 Identities=18% Similarity=0.150 Sum_probs=145.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 009195 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (540)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~ 147 (540)
|..+..++++.+--+-.+.++. .+...+.+++|.+.+.+++..++-.+...+..++..+++-|+ |-.+.+..++++..
T Consensus 11 ~~li~gIvlia~NLR~~itsvg-PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVG-PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhh-hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHH
Confidence 4455556666666666665544 456678899999999999999999999999999999999997 99999999999888
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
+|.++=.. .+...++.+-.+.|.|.+......|+.+-+-||++.
T Consensus 89 ~G~~iR~~-----------------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~------- 132 (395)
T COG2807 89 AGILIRSL-----------------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV------- 132 (395)
T ss_pred HHHHHHhc-----------------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------
Confidence 88776544 245678888999999999999999999999999764
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~-gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
+..+++|..+..+|+.+++.+...+.++. ||+..+.+.+...++++++++.
T Consensus 133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 78888999999999999999999998877 7999999988888888777654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-11 Score=125.47 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=117.2
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc----cchHHHH-HHHHHHHHHHHHHHHHhhhccccC
Q 009195 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVFM 163 (540)
Q Consensus 89 ~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~----~GR~~~i-~i~~~l~~i~~~~~~~~~~~~~~~ 163 (540)
.....+.+.+++|++.++.++.... .+...+ .+++|+++||+ +||||.+ +.+.++..+....+++..
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~------ 78 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV------ 78 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC------
Confidence 3444455667889999999988655 333333 78999999997 4899975 455665555555544331
Q ss_pred CCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHH
Q 009195 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (540)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~ 243 (540)
+. .+...+....++.+++.+...+...++++|++|+++ |+.+.++...+.++|..
T Consensus 79 ~~-------------------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~ 133 (356)
T TIGR00901 79 PS-------------------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGML 133 (356)
T ss_pred cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHH
Confidence 11 244455556667788888888999999999999888 99999999999999999
Q ss_pred HHHHHHHHhhhccc--------hHHHHHHHHHHHHHHHHHHHH
Q 009195 244 VAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 244 i~p~i~~~l~~~~g--------w~~~f~i~~i~~~~~~~~~~~ 278 (540)
+++.+++++....| ||..|++.++..+++.+..++
T Consensus 134 ~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 134 LSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred HHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888 999999888876665554443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-12 Score=136.62 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=122.6
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 009195 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (540)
Q Consensus 96 l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (540)
+.++++....+.+.+.++|.++++++.+++|.|.||+ .-.+.+..+.++..+..++....
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~------------------- 131 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV------------------- 131 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3467888888999999999999999999999999998 86666665555554444333332
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhh--
Q 009195 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-- 253 (540)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~-- 253 (540)
+|...+++.|++.|+..++..|+...+++.++.+++ |+.-+++++....+|.++|.+++..+.
T Consensus 132 ---------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~ 196 (495)
T KOG2533|consen 132 ---------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKL 196 (495)
T ss_pred ---------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhh
Confidence 678899999999999999999999999999999998 999999999999999999999988863
Q ss_pred ----hccchHHHHHHHHHHHHHHHHHHHH
Q 009195 254 ----MEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 254 ----~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
...||||.|.+..++.++..++.++
T Consensus 197 ~~~~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 197 NGSGGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred cCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence 3468999999988776655554444
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=131.91 Aligned_cols=183 Identities=12% Similarity=-0.003 Sum_probs=133.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 009195 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (540)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l 145 (540)
++++.........++..+.+|.+.++++.|+++.+|++......+.........++.++.|+++||+ |||++++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 3444444445556677788888889999999999999887665555566666778888999999998 999998888766
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 009195 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (540)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (540)
..++.+++..... .. .....+++..++.+++.+...+...++++|.+|++.
T Consensus 326 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~----- 376 (438)
T PRK09952 326 GTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY----- 376 (438)
T ss_pred HHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-----
Confidence 5554443333210 00 123334445566678888778888999999999988
Q ss_pred hhhhHHHH-HHHHHhHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHHHHHHh
Q 009195 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 226 ~R~~~~~~-~~~~~~lg~~i~p~i~~~l~~~~--gw~~~f~i~~i~~~~~~~~~~~~ 279 (540)
|+++.++ +..+..+|++++|.+.+++.+.. +|...+.+.+++.+++.+..+..
T Consensus 377 -r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 377 -RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred -hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 9999998 55566789999999999998744 48888877777766666655443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.5e-11 Score=127.35 Aligned_cols=172 Identities=10% Similarity=-0.028 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhh----hccch-HHHHHHHHHHHHHH
Q 009195 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGR-YWTIAIFTTIYLAG 149 (540)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD----~~~GR-~~~i~i~~~l~~i~ 149 (540)
.+..+..++....+..+++.|+++.+|++...++.+..+..+...+..|+.|+++| |+ || |+.++++.+...++
T Consensus 12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~ 90 (473)
T PRK10429 12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVV 90 (473)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHH
Confidence 34555666777777888999999999999999999999999999999999999999 55 98 55555666666666
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC-CCCchhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLD 228 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~-~~~~~~~~~R~ 228 (540)
.+++... |+ .+.......+++..++.+++.........++.+|+.+ +++ |.
T Consensus 91 ~~llf~~-------p~---------------~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~ 142 (473)
T PRK10429 91 LFLLFSA-------HL---------------FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------RE 142 (473)
T ss_pred HHHHHcC-------CC---------------CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HH
Confidence 5555432 10 0000223444555566778888888888899999985 444 88
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhh-------ccchHHHHHHHHHHHHHHHHH
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~-------~~gw~~~f~i~~i~~~~~~~~ 275 (540)
+..++-....++|+.+.+.+...+.. ..+|+....+.++..++..+.
T Consensus 143 ~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 143 QLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88888666667766655554443321 124555555554444443333
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-10 Score=119.14 Aligned_cols=178 Identities=11% Similarity=-0.016 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH--HHHHHHHHHHHhHH-HHHhhhccchHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV--NNFLGISQASSVLG-GFLADAYLGRYWTIAIFTTIYL 147 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~--~~~~~~~~~~~~~~-G~lsD~~~GR~~~i~i~~~l~~ 147 (540)
...++..-+.+.+.+..+.+.++.|++ +.|.+.++.+... ......-.+..++. ++++||+ ||||.+++...+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 344555667777777667777887876 5699999999863 44455555555555 6689987 99999766653322
Q ss_pred H-HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 148 i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
. ....+... . +. ......+....++.++..+...+...++..|..++++
T Consensus 81 ~~~~~~~~~~--~----~~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------ 130 (390)
T TIGR02718 81 SACLASLALV--G----PD------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------ 130 (390)
T ss_pred HHHHHHHHcC--C----cc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence 2 22222211 0 00 0112233344455566666667777777788777666
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~ 280 (540)
++...+....+..+|..+|+.+.+++.++.|||..|++.++..++..+..+...
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~ 184 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLK 184 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 777777777777899999998888999999999999998887766555544433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-12 Score=132.04 Aligned_cols=174 Identities=14% Similarity=0.052 Sum_probs=132.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 009195 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (540)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l 145 (540)
++++..+......++....++.+..+++.|+++++|.+..+.+.......++..++.+++|+++||+ |||+.+.++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~ 294 (394)
T TIGR00883 216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVL 294 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Confidence 3334566666777777788888888999999999999999999999999999999999999999998 999988766554
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 009195 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (540)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (540)
..+..++...... .. .+...++...++.|++.+...+...++++|.+|++.
T Consensus 295 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~----- 345 (394)
T TIGR00883 295 AALLAVPLLMALL-----DS-------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV----- 345 (394)
T ss_pred HHHHHHHHHHHHh-----cC-------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc-----
Confidence 4433221111100 00 234455666778888888888999999999999988
Q ss_pred hhhhHHHH-HHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHH
Q 009195 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMG 270 (540)
Q Consensus 226 ~R~~~~~~-~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~ 270 (540)
|++++++ +.++..+|..++|.+++++.++.| |++.++..+++.+
T Consensus 346 -~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 346 -RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred -eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 8888888 556677899999999999999888 8877666554433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=138.05 Aligned_cols=134 Identities=9% Similarity=0.002 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHH
Q 009195 109 NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188 (540)
Q Consensus 109 ~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (540)
+...+..++..++.+++|+++||+ |||++++++.++..++.+++++. .+..
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~----------------------------~s~~ 649 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFG----------------------------NSES 649 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHH----------------------------ccHH
Confidence 334556688889999999999998 99999999988888887776654 2344
Q ss_pred HHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 009195 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (540)
Q Consensus 189 ~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~ 268 (540)
.+++.+++.|++.++..+...++++|++|++. |++++++.+....+|++++|++++++... +...+|++.+++
T Consensus 650 ~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ 722 (742)
T TIGR01299 650 AMIALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAA 722 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHH
Confidence 55666778888888888889999999999988 99999999999999999999999988764 455677776666
Q ss_pred HHHHHHHHHH
Q 009195 269 MGISNMLFFI 278 (540)
Q Consensus 269 ~~~~~~~~~~ 278 (540)
.+++.++.++
T Consensus 723 lll~~ll~~~ 732 (742)
T TIGR01299 723 LACGGLLALK 732 (742)
T ss_pred HHHHHHHHHh
Confidence 6655554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=124.18 Aligned_cols=172 Identities=20% Similarity=0.236 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH-HHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG 149 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~-~i~i~~~l~~i~ 149 (540)
.+...+..++..........+.+.++.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+.++.++..++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 255 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence 34444455566666666777888888888899999999999999999999999999999998 9999 999999888888
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+.+... .+...+++..++.|++.+...+....++.|.+|+++ |++
T Consensus 256 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 301 (352)
T cd06174 256 LLLLALA----------------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGT 301 (352)
T ss_pred HHHHHHh----------------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHH
Confidence 8777654 345667788899999999999999999999999888 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
.+++++...++|..+++.+.+++.+..+|++.+.+.++..+++.+..+
T Consensus 302 ~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999888999999988887776665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-11 Score=125.55 Aligned_cols=177 Identities=10% Similarity=0.070 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHH-HHHHHHHHHHH
Q 009195 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWT-IAIFTTIYLAG 149 (540)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~-i~i~~~l~~i~ 149 (540)
-.+..+..++....+..+++.|+++.+|++...++.+..+..+...+..|+.|+++||. +||||. ++++.+...+.
T Consensus 14 yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~ 93 (444)
T PRK09669 14 YGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVV 93 (444)
T ss_pred hcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHH
Confidence 33444556666666778899999999999999999999999999999999999999993 387554 55666666665
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+++... |. .+.......+++..++.+++..+......++.+|+.++.++ |.+
T Consensus 94 ~~l~f~~-------p~---------------~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~ 146 (444)
T PRK09669 94 CLLTFYT-------PD---------------FGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHS 146 (444)
T ss_pred HHHHHhC-------CC---------------CCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHH
Confidence 5544332 11 00013345555555666777777777778999998854321 888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhh-------ccchHHHHHHHHHHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~-------~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
..++.....++|..+++.+...+.. ..+|+..+.+.+++.++..++.+
T Consensus 147 l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~ 201 (444)
T PRK09669 147 LQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 8888777777877777665433322 24677766666555544443333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-11 Score=127.43 Aligned_cols=171 Identities=15% Similarity=0.144 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.++.+.+..++.....+++..++|.|+++.+|++..+++...+.+.++..++.+++|+++||+ |||+.+.....+..+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence 445555566666677778889999999999999999999999999999999999999999998 9999888777665555
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
..+.... .+...+.+..++.|++.+...+...++..|..|.+ +++
T Consensus 285 ~~~~~~~----------------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~ 329 (394)
T PRK03699 285 MYLFVNT----------------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK 329 (394)
T ss_pred HHHHHHc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence 4444332 23334455667788888877788788888877643 445
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~ 276 (540)
..++.+....+|+.++|.+.+++.+..|++..+++.+++.+++.++.
T Consensus 330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 56777777889999999999999999999999987777666554443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=127.04 Aligned_cols=168 Identities=15% Similarity=0.081 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~ 151 (540)
+......++..+.......+.+.|. +++|.+..+.+...+...++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~ 285 (377)
T TIGR00890 208 WVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMA 285 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHH
Confidence 3333444444444444445556665 56899988889999999999999999999999998 999999998888888777
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~ 231 (540)
++..... .+...+++..++.|++.+...+..+.+..|.+|+++ |++.+
T Consensus 286 ~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~ 333 (377)
T TIGR00890 286 AMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANY 333 (377)
T ss_pred HHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHh
Confidence 6654310 122334455677888888888888899999999988 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (540)
Q Consensus 232 ~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~ 273 (540)
++++....+|..++|.+.+++.++.||++.|.+.+++.++++
T Consensus 334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988777665543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-11 Score=126.55 Aligned_cols=165 Identities=13% Similarity=0.071 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 009195 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (540)
Q Consensus 79 ~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~ 158 (540)
++..++++.+..+++.|+.+ .|++ ..+...+.+.++..++.++.|+++||+ |||+.+.++.++..++.+++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-- 299 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA-- 299 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh--
Confidence 34455566666777888764 4653 345566777888889999999999997 99999988888777777666553
Q ss_pred ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 009195 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (540)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~ 238 (540)
.+...++++.++.|++.+...+.......|.+|++. |++..++++...
T Consensus 300 --------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 347 (399)
T PRK05122 300 --------------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFL 347 (399)
T ss_pred --------------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 234556677889999998888888888889998877 999999999999
Q ss_pred hHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 239 ~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
++|..+++.+.+++.+..||++.|++.+++.++++++.+...+
T Consensus 348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887777776666555443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-10 Score=122.78 Aligned_cols=155 Identities=11% Similarity=0.042 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHH-HHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFTTIY 146 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~i-~i~~~l~ 146 (540)
.+.-.+..+..++.+..+.++++.|+++.+|++..+++.+.....+...+..++.|+++||. +||||.+ +++.+..
T Consensus 10 ~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~ 89 (448)
T PRK09848 10 IVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL 89 (448)
T ss_pred HHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH
Confidence 33344556666777767778888999999999999999999999999999999999999995 3777755 4555544
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.+..+++..... ...+ ......+++..++.+++.+...+...++..++..+.++
T Consensus 90 ~~~~~~~~~~~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~----- 143 (448)
T PRK09848 90 MIFSVLVFWVPT--DWSH-------------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS----- 143 (448)
T ss_pred HHHHHHHHhCcC--CCCc-------------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----
Confidence 444333322100 0000 02233344455677888888887777888887765332
Q ss_pred hhhHHHHHHHH-----HhHHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLS-----VTVGAIVAFTLVVY 251 (540)
Q Consensus 227 R~~~~~~~~~~-----~~lg~~i~p~i~~~ 251 (540)
|.+..++-.++ .+++..++|.+.+.
T Consensus 144 r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 144 RARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665554332 34555666666554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-11 Score=123.78 Aligned_cols=162 Identities=10% Similarity=0.042 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 009195 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (540)
Q Consensus 80 ~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~ 159 (540)
+..........+++.|+++++|.+..+.+.......+...++.+++|+++||+ |||+++.++.++..++.+.....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--- 285 (375)
T TIGR00899 210 LMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAAD--- 285 (375)
T ss_pred HHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHH---
Confidence 33333344456678899899999999998888777777778889999999998 99999888776555544433332
Q ss_pred cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHh
Q 009195 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (540)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~ 239 (540)
.+...+++.+++.|++.+...+....+..|.+|+ + +++.+++++...+
T Consensus 286 -------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~ 333 (375)
T TIGR00899 286 -------------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGR 333 (375)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHH
Confidence 3445566677788888888778888888898875 3 5688999999999
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 240 lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
+|..++|.+.+++.+..||+..|++.++..+++.++..
T Consensus 334 ~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 334 VGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988877766666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-10 Score=120.47 Aligned_cols=174 Identities=11% Similarity=-0.014 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
+..+......+...+.+-...++.+.+++++.|++.++.|.+.++..+...+..|+.|.++||+ |.||-++....+..+
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 3566666666777777666788999999999999999999999999999999999999999998 966655544433322
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHH----HHhhcccchhhhhhhhccCCCCCchhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYIT----GFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
...+.......+.+. .| ++++.++. +++..+..+..-++..+..
T Consensus 86 l~~pff~~v~~pll~---------------------~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s-------- 133 (412)
T PF01306_consen 86 LFGPFFIYVFGPLLQ---------------------SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERVS-------- 133 (412)
T ss_dssp TCHHHHHHTHHHHHH---------------------TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHH---------------------HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHHH--------
Confidence 222211110000000 11 22233332 3333333344444443322
Q ss_pred hhhhhHHHH--HHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNF--FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 225 ~~R~~~~~~--~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
|...+-+ -.+.+.+|.+++..++|++.+ .+-...||+..+..++..++.+.
T Consensus 134 --r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 134 --RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp --HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred --HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHH
Confidence 2222222 333566888888889998876 35566788766655544444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.4e-11 Score=129.91 Aligned_cols=178 Identities=9% Similarity=-0.015 Sum_probs=129.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
.++|..+........+.... |++. .....+++++|++..+.+++.++... ..++.++.|+++||+ |||+++.++.+
T Consensus 24 ~~Rw~~lva~~~~~~~~g~~-y~fs-v~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~l 99 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSFM-YAFN-LISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMT 99 (591)
T ss_pred cchHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 45665555445444444333 3443 33557889999999999988876443 345666789999997 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..+++++++++... ... .+.+.+++.|++.|+|.+...+.....+.++|| ++
T Consensus 100 l~~iG~ll~ala~~~--~i~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~---- 152 (591)
T PTZ00207 100 VFCLGTLLFALTFQE--VIE--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN---- 152 (591)
T ss_pred HHHHHHHHHHHHhcc--ccc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh----
Confidence 999999998875220 001 357888999999999999888888888999997 56
Q ss_pred hhhhhHHHHHHHHHhHHHHH-HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i-~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
|++..++......+|+.+ +++..+++.+ +|+..|++.++..++..++.+
T Consensus 153 --RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 153 --RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 5555565543 577777766665544433333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.4e-10 Score=115.87 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (540)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~ 152 (540)
++....++..+.+-...++++.|+++ .|++..+.+.+.+...+...+.++++|+++||...+|+.+.+..++..+....
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~ 84 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566788889975 67999999999999999999999999999999845677777766665554444
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 009195 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~ 232 (540)
.... .+...+++..++..+......|...++.-+...++. ..-+|-|..+
T Consensus 85 ~~~~----------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~--~~YG~iRlwG 134 (400)
T PF03825_consen 85 LAFS----------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG--KDYGRIRLWG 134 (400)
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc--CCCCcchhhh
Confidence 4332 345556666677777777777777777766665322 1223555544
Q ss_pred H
Q 009195 233 F 233 (540)
Q Consensus 233 ~ 233 (540)
-
T Consensus 135 S 135 (400)
T PF03825_consen 135 S 135 (400)
T ss_pred h
Confidence 3
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-11 Score=122.41 Aligned_cols=180 Identities=12% Similarity=-0.020 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH-HHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AIFTTIYL 147 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i-~i~~~l~~ 147 (540)
+..+...+..++.....+.+..+.+.|+++.+|.+..+.++......++..++.+++|+++||+ |||+.. ........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 3566677777788888888888999999999999999999999999999999999999999998 988621 11111111
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++.+...+..... +. ..+..... ...+.+.+..+..+...++.+|.+|++. |
T Consensus 294 ~~~~~~~~~~~~~---~~------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 345 (399)
T TIGR00893 294 IAGLVLSLLMFAT---NY------------------VNIPYAAL-ALVALGFFGLGAGAIGWALISDNAPGNI------A 345 (399)
T ss_pred HHHHHHHHHHHHh---cc------------------chhHHHHH-HHHHHHHhchhhhhHHHHHHHhhcChhH------H
Confidence 1111111110000 00 01222233 3333333333378888999999999988 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHH
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~ 277 (540)
++.+++++...++|..++|.+.+++.+..| |+..|++.++..+++.++.+
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888 99998887777666555443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-11 Score=128.51 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chHHHH-HHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIY 146 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~-GR~~~i-~i~~~l~ 146 (540)
+.++...+..++.....|++..++|.|+++..|++..+++.....+.++..++.+++|+++||+. |||+.. .+...+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 35666777777777777888899999999999999989988888888888999999999999972 344332 2222333
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.++.+.+.+. +. .+.....+..++.|.+..........+..|.+|++.
T Consensus 333 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 380 (452)
T PRK11273 333 TIATIVYWLN-------PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------ 380 (452)
T ss_pred HHHHHHHHHh-------cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------
Confidence 3333222221 00 123333344455555443333344456779999988
Q ss_pred hhhHHHHHHHHHhHHHHH-HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i-~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
|++++++.+...++|+.+ +|.+.+++.++.||+..|++.++..+++++....
T Consensus 381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888654 7999999999999999998877766666555443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.3e-11 Score=123.54 Aligned_cols=168 Identities=10% Similarity=-0.005 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (540)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~ 153 (540)
+....++.....+.+..+++.|+.+ .|++..+.+...+...++..++.++.|+++||+ |||+.+.++.+...++.+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~ 302 (406)
T PRK11551 225 LWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAAL 302 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence 3333444455566677778888865 799999999999999999999999999999998 99999888666555555444
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 009195 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~ 233 (540)
... .+...+.+..++.|++.++..+...++..|.+|++. |++.+++
T Consensus 303 ~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 348 (406)
T PRK11551 303 AAA----------------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGA 348 (406)
T ss_pred Hhc----------------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhH
Confidence 332 233445556677888887778888899999999988 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHH
Q 009195 234 FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 234 ~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~ 277 (540)
++....+|..++|.+.+++.++.+ |...+++...+.+++.++.+
T Consensus 349 ~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 349 AVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988654 55566555555555444443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-11 Score=124.19 Aligned_cols=164 Identities=12% Similarity=0.037 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 80 AERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (540)
Q Consensus 80 ~~~~~~~~~~~~~~~yl~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~ 156 (540)
+.......+.+.++.|+.+..+.... ..+.+.+...++..++.++.|+++||+ |||+++.++.++..++.+++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
T PRK09874 230 IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFV 308 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHh
Confidence 33344444556677787765443322 234555566677788889999999998 99999998888777666655443
Q ss_pred hhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 009195 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (540)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~ 236 (540)
.+...+++.+++.|++.+...+...+++.+..|++. |++.+++++.
T Consensus 309 ----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 354 (408)
T PRK09874 309 ----------------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQS 354 (408)
T ss_pred ----------------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHH
Confidence 235566778889999999999999999989888888 9999999999
Q ss_pred HHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 237 ~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
..++|..+||.+++++.+..||++.|++.+++.+++.+..+.
T Consensus 355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888877776665544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.7e-12 Score=109.32 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHH
Q 009195 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191 (540)
Q Consensus 112 ~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (540)
+.+.++..++.++.|+++||+ |||+.+.++..+..++.+.+... .+...+.
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 55 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS----------------------------SNITVLI 55 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh----------------------------ccHHHHH
Confidence 345667788899999999997 99999999988888887766654 3466777
Q ss_pred HHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (540)
Q Consensus 192 ~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~ 271 (540)
+.+++.|++.+...+....+..|.+|+++ |++..++.+....+|..++|.+.+++.+..+|++.+++..+..++
T Consensus 56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (141)
T TIGR00880 56 IARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129 (141)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence 88999999999999999999999999988 999999999999999999999999999888999998887766665
Q ss_pred HHHHHHH
Q 009195 272 SNMLFFI 278 (540)
Q Consensus 272 ~~~~~~~ 278 (540)
..+....
T Consensus 130 ~~~~~~~ 136 (141)
T TIGR00880 130 AFILLAF 136 (141)
T ss_pred HHHHHhh
Confidence 5554443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-11 Score=125.84 Aligned_cols=177 Identities=16% Similarity=0.120 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc--hHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYL 147 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~G--R~~~i~i~~~l~~ 147 (540)
.++.+.+..++..+.++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ |++......+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 45556666666666777788899999988899999999999999999999999999999999732 2332222221112
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
+..+.+... +. .+.....+..+..|++............+|.+|++. |
T Consensus 324 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 371 (434)
T PRK11663 324 LSVGSLWLM-------PF-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A 371 (434)
T ss_pred HHHHHHHHc-------cc-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence 121111111 10 122223333344454433333344566789998888 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
++..++.+...++|+.++|.+.+++.++.||+..|++.+++.+++.+..+.
T Consensus 372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887776665554444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-09 Score=115.21 Aligned_cols=177 Identities=10% Similarity=0.056 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHHH-HHHHHHHHHH
Q 009195 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTTIYLAGL 150 (540)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~i~-i~~~l~~i~~ 150 (540)
.+..+..++.+..+..++..|+++.+|++...++.+..+.-+.-++.-|+.|+++||. +||||..+ ++.+...++.
T Consensus 15 g~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~ 94 (460)
T PRK11462 15 GMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC 94 (460)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence 3455556666666778899999999999999999999999999999999999999973 58876555 5556666666
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
+++... +...+ ......+++.-.+..++.........++.+|+.++.++ |.+.
T Consensus 95 ~llf~~---p~~s~-------------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l 147 (460)
T PRK11462 95 VLAYST---PDLSM-------------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISL 147 (460)
T ss_pred HHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHH
Confidence 555432 10000 12234455555667888888888888999999975432 9999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhc-------cchHHHHHHHHHHHHHHHHHHHH
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~~-------~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
.++.....++|..+++.+...+... .+|+....+.+++.++..++.+.
T Consensus 148 ~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 148 QSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9998888888887777766544332 24666555555444444433333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-11 Score=128.28 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 009195 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (540)
Q Consensus 87 ~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~ 166 (540)
.+..+++.|+++.+|++..+++++.+...++..++.+++|+++||+ |||+++.++.++..++.++.... ++
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~-------~~- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAI-------GG- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhc-------cc-
Confidence 4567889999989999999999999999999999999999999997 99999888776655554433322 10
Q ss_pred CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHH
Q 009195 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (540)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p 246 (540)
.+...+.+..++.++...+..+..++++.|.+|++. |++.+++++...++|+.++|
T Consensus 364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp 419 (496)
T PRK03893 364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAP 419 (496)
T ss_pred ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHH
Confidence 223333344444444434445677888999999888 99999999898999999999
Q ss_pred HHHHHhhhccchHHHHHHHHHHH
Q 009195 247 TLVVYIQMEHGWGSAFGALAIAM 269 (540)
Q Consensus 247 ~i~~~l~~~~gw~~~f~i~~i~~ 269 (540)
.+++++.+.+||+..+.+.++..
T Consensus 420 ~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 420 ILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHhccCChHHHHHHHHHHH
Confidence 99999999999988776554433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-10 Score=120.47 Aligned_cols=177 Identities=15% Similarity=0.043 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..+.+.+..++..++++++..+++.|+.+ +|.+..+++...+.+.++..++.++.|+++||+ |||+.+.++.++..++
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVG 283 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence 34555555566677888888999999976 899999999999999999999999999999997 9999998888777776
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC-CCCchhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD-ERSKDYKTHLD 228 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~-~~~~~~~~~R~ 228 (540)
.+++... + .+...+ ..++.|++.+...+.......+.++ ++. |+
T Consensus 284 ~~~~~~~-------~--------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g 328 (393)
T PRK09705 284 FCGFIWL-------P--------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AG 328 (393)
T ss_pred HHHHHHc-------c--------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HH
Confidence 6654432 1 111112 2245678888777777777778875 344 89
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcccc
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLY 283 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~~~~~~~ 283 (540)
+.+++.+...++++.++|.+.+++.+..| |...|++.+++.++.++..+...++.
T Consensus 329 ~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 329 KLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999888899999999999999999886 88888887777666666555544443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=124.30 Aligned_cols=175 Identities=11% Similarity=0.044 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 009195 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (540)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~--------~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l 145 (540)
.++..++..........+.+.|+.+ .|.+ ....+...++..++..++.++.|+++||+ |||+++.++.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~ 290 (418)
T TIGR00889 213 FFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVA 290 (418)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 3333444444443444666777754 4543 35668888888888999999999999998 999999999988
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 009195 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (540)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (540)
..++..++..... . ..+...+++..++.|++.+...+....+++|.+|++.
T Consensus 291 ~~v~~~l~~~~~~------~------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~----- 341 (418)
T TIGR00889 291 WALRFGFFAYGDP------E------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI----- 341 (418)
T ss_pred HHHHHHHHHHcCc------c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence 8887666654210 0 0124556677889999998888888999999999888
Q ss_pred hhhhHHHHHH-HHHhHHHHHHHHHHHHhhhc------cchHHHHHHHHHHHHHHHHHHHHhc
Q 009195 226 HLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGT 280 (540)
Q Consensus 226 ~R~~~~~~~~-~~~~lg~~i~p~i~~~l~~~------~gw~~~f~i~~i~~~~~~~~~~~~~ 280 (540)
|++.+++++ ....+|..+||+++|++.++ +||++.|.+.+++.+++.+++++..
T Consensus 342 -~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~ 402 (418)
T TIGR00889 342 -RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF 402 (418)
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999986 56789999999999999887 4699999887777666555555443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.7e-11 Score=123.35 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=126.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 009195 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (540)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l 145 (540)
++|+.........++.....+.+..+++.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~ 313 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLA 313 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHH
Confidence 3444444444444444555556677889999999999999999999999999999999999999997 999998887765
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 009195 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (540)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (540)
..+..+..... . .+...+.++.++.+++.++..+..+.++.|.+|++.
T Consensus 314 ~~~~~~~~~~~-------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 361 (405)
T TIGR00891 314 GQLLIIPVFAI-------G--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ----- 361 (405)
T ss_pred HHHHHHHHHHh-------C--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence 43322222111 0 234455566677777777777888899999999988
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHH
Q 009195 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 264 (540)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i 264 (540)
|++.+++.+...++|+.++|.+.+++.+..| |+..+..
T Consensus 362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 9999999999999999999999999999888 8766554
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-10 Score=118.76 Aligned_cols=171 Identities=15% Similarity=-0.036 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (540)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~ 152 (540)
...+..++.....++...+++.|+.+.+|.+..+++++.+.+.++..++.++.|+++||+ |||+.+ ++..+..++...
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~~ 286 (390)
T PRK03545 209 SLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLLL 286 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHHH
Confidence 333444455555566667788899888999999999999999999999999999999997 988654 444433333332
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 009195 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~ 232 (540)
..... .+...+++..++.|++.+...+.....+.+..| +. |+++++
T Consensus 287 l~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g 332 (390)
T PRK03545 287 LLPAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMA 332 (390)
T ss_pred HHHHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHH
Confidence 22210 245556667778888887777777777888766 45 888999
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 233 ~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~ 279 (540)
+++....+|..+||+++|++.++.|++..|++.+++.+++++.....
T Consensus 333 ~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 333 LFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 98888899999999999999999999999998888777776665543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-10 Score=122.95 Aligned_cols=161 Identities=15% Similarity=0.060 Sum_probs=113.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
+|+.....+...++....++.+..+++.|+++.+|++..++++......++..++.+++|+++||+ |||+++.++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~ 314 (434)
T PRK15075 236 NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLA 314 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 343333334444556667778888999999998999999888888888888899999999999998 9999887765443
Q ss_pred HHHHHH-HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 009195 147 LAGLTG-ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (540)
Q Consensus 147 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (540)
.+..++ ..... .. .+...+.+..++.+++.+...+....+..|.+|++.
T Consensus 315 ~~~~~~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~----- 364 (434)
T PRK15075 315 ILTAYPALSWLV------AA-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV----- 364 (434)
T ss_pred HHHHHHHHHHHH------cC-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc-----
Confidence 322211 11110 00 122233344455566666666666788999999998
Q ss_pred hhhhHHHHH-HHHHhHHHHHHHHHHHHhhhccchH
Q 009195 226 HLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWG 259 (540)
Q Consensus 226 ~R~~~~~~~-~~~~~lg~~i~p~i~~~l~~~~gw~ 259 (540)
|++++++. +++..+++.++|.+.+++.+.+|+.
T Consensus 365 -rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 365 -RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred -cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 99999984 4445556788999999999988853
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=121.92 Aligned_cols=179 Identities=14% Similarity=0.074 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhh----hccchHHHHH-HHHHHHHHHHHH
Q 009195 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTIA-IFTTIYLAGLTG 152 (540)
Q Consensus 78 ~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD----~~~GR~~~i~-i~~~l~~i~~~~ 152 (540)
.+...+.......+++.|+++.+|+++...+.+..+..+..++.-|+.|.++| |+ ||||..+ ++.++..++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence 35555666666678899999999999999999999999999999999999999 66 8766554 677777777766
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 009195 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~ 232 (540)
+.... |. +.+.......+.+..++..++.........++.+|+.++.++ |.+..+
T Consensus 89 lf~~~------p~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~ 143 (428)
T PF13347_consen 89 LFSPP------PA--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSS 143 (428)
T ss_pred hhccc------cc--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHH
Confidence 65420 10 000001233445666677889899999999999999986432 888888
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhcc-------chHHHHHHHHHHHHHHHHHHHHhccc
Q 009195 233 FFYLSVTVGAIVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPL 282 (540)
Q Consensus 233 ~~~~~~~lg~~i~p~i~~~l~~~~-------gw~~~f~i~~i~~~~~~~~~~~~~~~ 282 (540)
+-.....+|..+...+.+.+.+.. +|++...+.+++.++..++..+..++
T Consensus 144 ~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 144 WRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 877777777765555555443221 58887777777666665555554443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=121.90 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 009195 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (540)
Q Consensus 80 ~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~ 159 (540)
+..+.+..+..+.+.|+++ .|++. .+.....+.++..++.++.|++.||+ |||+.+.++..+..++.+++...
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~--- 299 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA--- 299 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc---
Confidence 3344555566677777754 46653 45556667777888999999999997 99999999888888877665543
Q ss_pred cccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHh
Q 009195 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (540)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~ 239 (540)
.+....+++.++.|++.+...+...+...|.+|++. |++.+++++....
T Consensus 300 -------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (392)
T PRK12382 300 -------------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD 348 (392)
T ss_pred -------------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 234556677888899988888888888999999888 9999999999999
Q ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 240 lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
+|..++|.+.+++.++.||++.|.+.+++.+++.++.+.
T Consensus 349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888877776665544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.2e-11 Score=125.80 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 009195 88 LSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (540)
Q Consensus 88 ~~~~~~~yl~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~ 164 (540)
....++.|+.+.+ +.+..+.+.+.++..++..++.+++|+++||+ |||+.+.++.++..++..++.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~-------- 312 (420)
T PRK09528 242 FDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA-------- 312 (420)
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc--------
Confidence 3345666766543 56667778888888888899999999999998 99999999888888877776654
Q ss_pred CCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH-HHHHHhHHHH
Q 009195 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAI 243 (540)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~-~~~~~~lg~~ 243 (540)
.+...+++.+++.|++.+...+....++.|.+|++. |++..+. ++....+|..
T Consensus 313 --------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ 366 (420)
T PRK09528 313 --------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAV 366 (420)
T ss_pred --------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHH
Confidence 345667777888898888877778889999999887 7777665 6777889999
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 244 VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 244 i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
++|.+.|++.+..||+..|.+.+++.++..++.+
T Consensus 367 ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 367 FLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887776655544443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=121.99 Aligned_cols=158 Identities=12% Similarity=-0.009 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 009195 86 FGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (540)
Q Consensus 86 ~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~ 165 (540)
+++..+++.|+++.+|.+..+.+++.+...++..++.++.++++||. ++++.+..+.++..++.+++...
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------- 309 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------- 309 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc---------
Confidence 45667788899888999999999999999999999999999999986 88888888877777776665543
Q ss_pred CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHH
Q 009195 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (540)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~ 245 (540)
.+....+++.++.|++.+...+...+++.|.+|++. |++.+++++...++|..+|
T Consensus 310 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g 364 (417)
T PRK10489 310 -------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIG 364 (417)
T ss_pred -------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHH
Confidence 344556677788888888777777889999999888 9999999999999999999
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 246 p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
|.+.|++.+..|++..+.+.+++.++..++...
T Consensus 365 ~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 365 AALLGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999989888877666555444444433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-10 Score=120.08 Aligned_cols=169 Identities=11% Similarity=0.033 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 009195 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (540)
Q Consensus 78 ~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~ 157 (540)
.++....+|++..+++.|+.+.+|.+..+.+...++..++..++.++.|+++||+ |||+++.++.++..+..++.....
T Consensus 252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~ 330 (432)
T PRK10406 252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677888899999999999999998888888887777788888999999998 999988776655443333222110
Q ss_pred hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 009195 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (540)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~ 237 (540)
. .. .+....+....+.+++.+...+....+.+|.||++. |++++++.+..
T Consensus 331 ~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~ 380 (432)
T PRK10406 331 Q-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAV 380 (432)
T ss_pred H-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHH
Confidence 0 00 111211112222223333344556788899999999 99999995544
Q ss_pred -HhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Q 009195 238 -VTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 238 -~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~~ 278 (540)
..+++..+|.+.+++. .+| |...+++.++..+++++..++
T Consensus 381 g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 381 ANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4454556888888664 445 555565555555555444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-10 Score=118.25 Aligned_cols=176 Identities=14% Similarity=0.049 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH-HHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA 148 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~-i~~~l~~i 148 (540)
.++...+..++....+++..++.|.|++ ++|++..+.+.+.....++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence 3455556667777888888889998885 5899999999988889999999999999999997 9888764 22222223
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
+.+.+..... ... .+....++..++.|++.+...+. .....|..| ++ |+
T Consensus 301 ~~~~l~~~~~---~~~--------------------~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~------~g 349 (402)
T TIGR00897 301 FTLALYYIPQ---HFG--------------------HSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH------KG 349 (402)
T ss_pred HHHHHHHHHH---ccC--------------------CcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch------hH
Confidence 2222222100 000 23444556667778877765443 455667654 46 99
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
+.+++++...++|..++|.+.+++.+.+||+..|++.+++.+++.++..+
T Consensus 350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777666655544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-10 Score=116.92 Aligned_cols=169 Identities=9% Similarity=-0.076 Sum_probs=140.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
+..+...+..++...+.+...++.+.|+++ +|.+..+.+...+...++..++.++.+++.||+ |+|+.+.++.++..+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 345666666677777777788888999965 899999999999988899999999999999998 999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
..++++.+ .+...+++..++.|+..+...+....++.+. |++. |+
T Consensus 283 ~~~~~~~~----------------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~ 327 (382)
T TIGR00902 283 RWAIIGAI----------------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IA 327 (382)
T ss_pred HHHHHHhH----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HH
Confidence 88887764 4677788889999999999999999999987 8777 88
Q ss_pred hHHHHHH-HHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 229 RFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 229 ~~~~~~~-~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~ 275 (540)
++.++++ ....+|..+++.++|++.++.|+ ..|.+.++..++++++
T Consensus 328 ~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 328 KLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 8889876 46779999999999999999886 5566666655555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-08 Score=107.51 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=48.1
Q ss_pred ccchhHHHHHHHHHHHhhHHHHHHHHHHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHHHHHHH
Q 009195 437 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFL 510 (540)
Q Consensus 437 ~P~~~rg~~~g~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~i~~~ 510 (540)
.|++..+...|++.+.....++++|++++.+.+.+| +..+-++.+.++.++++++++
T Consensus 409 iP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-----------------~~r~g~~~l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 409 IPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG-----------------SQRYGFLFLLVLFLIGLILLF 465 (477)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------------CchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999887 234556677777777766653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.1e-10 Score=119.64 Aligned_cols=182 Identities=14% Similarity=0.116 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH--HHHHHHHHH
Q 009195 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTTI 145 (540)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~--~~i~i~~~l 145 (540)
.|.+..-+++.++.+-+...+......|.++++|++..+...+..+..+...+|.+++|++.||+ |-| ++++++.++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 35667777777888888888999999999999999999999999999999999999999999998 988 888777766
Q ss_pred HHH-HHHHHH-HhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 009195 146 YLA-GLTGIT-LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (540)
Q Consensus 146 ~~i-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~ 223 (540)
..+ ....+. +... .... .+.+.+++.-++.|+..|+.++..=++.+|+.|+..
T Consensus 359 ~~~i~~~g~~G~~~~---~~g~-------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~--- 413 (477)
T PF11700_consen 359 WIIIPLYGLFGFWPS---FFGL-------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR--- 413 (477)
T ss_pred HHHHHHHHHHHhhhc---ccCc-------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch---
Confidence 533 222221 1000 0000 345567777789999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Q 009195 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 224 ~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~~ 278 (540)
.+.+|++|.+..-..+.+||++.+.+.+.+| -|+++....++.+++++++..
T Consensus 414 ---e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 414 ---EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999887 888888877777777776644
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-10 Score=116.24 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009195 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (540)
Q Consensus 83 ~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~ 162 (540)
+.+.....+++.|+++ .|.+..+.+...+...++..++.++.|+++||+ |||+++.++.++..++.+... .
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------ 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------ 284 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h------
Confidence 3344455667888865 699999999889999999999999999999998 999999888777776654432 1
Q ss_pred CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHH
Q 009195 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (540)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~ 242 (540)
....+...++.|++.+...+...+...|..|+++ ++...+.++...++|.
T Consensus 285 ------------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~ 334 (381)
T PRK03633 285 ------------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS 334 (381)
T ss_pred ------------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence 1122345566777777777888888899988766 7777777778889999
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 243 ~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~ 275 (540)
.+||.+++++.+++||++.|.+.+.+.++..+.
T Consensus 335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877766555443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.6e-10 Score=120.49 Aligned_cols=187 Identities=13% Similarity=0.005 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..+..++..+......+.+..+ ..+..+++|++..++++......++..++.+++|+++||+ |||+.+.++.++..++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~ 362 (481)
T TIGR00879 285 LFLGVVLQWFQQFTGINAIMYY-SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAIC 362 (481)
T ss_pred HHHHHHHHHHHHHhCCeehHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 3333333333333333333333 4455567899988888888888899999999999999998 9999999988777777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+++.+..... .+. .++..+...+....++.+....+..+....+..|.+|++. |++
T Consensus 363 ~~~~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~ 419 (481)
T TIGR00879 363 LFVLGILGASF--VTG---------------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPK 419 (481)
T ss_pred HHHHHHHhhcc--cCC---------------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHH
Confidence 66665321100 000 0000122222222223333333344666778899999888 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
..++.+...++|+.++|.+.+++.++.+|++.|++.+++.+++.++.++..+
T Consensus 420 ~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 420 GISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecc
Confidence 9999999999999999999999998889999998877776666665544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=118.58 Aligned_cols=171 Identities=11% Similarity=0.076 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH-HHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 009195 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (540)
Q Consensus 79 ~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~ 157 (540)
++..+..+....+.++|+.+.+|++..+.+.... ...++..++.+++|+++||+ |||+.+.++.++..++.+.+....
T Consensus 232 ~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~~~l~ 310 (491)
T PRK11010 232 VLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGYWLLS 310 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555667788888889999999998874 55678999999999999998 999988776665555443332211
Q ss_pred hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 009195 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (540)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~ 237 (540)
. .+ .+...+....++..++.|...+...++..+..+++. +++.+++.+..
T Consensus 311 ~----~~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~ 360 (491)
T PRK11010 311 I----TD--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSAL 360 (491)
T ss_pred h----cc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHH
Confidence 0 00 123333444455444445445666788888888888 78888998888
Q ss_pred HhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 009195 238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (540)
Q Consensus 238 ~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~ 280 (540)
.++|..+++.+.|++.+..||+..|.+.+++.++++++....+
T Consensus 361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998989999999999999999888888877776665543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-10 Score=121.05 Aligned_cols=172 Identities=7% Similarity=-0.025 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc-cchHHHHHHHH--HHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFT--TIY 146 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~-~GR~~~i~i~~--~l~ 146 (540)
..+......++..++++....+++.|+++ +|++..+++++.+...++..++.+++|+++||. +++++...++. ++.
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 45555666667777777778888999864 799999999999999999999999999999984 24444443333 222
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.++.+++... .+...+++.+++.|++.+...++..+++.|.+|++.
T Consensus 321 ~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------ 366 (455)
T TIGR00892 321 GLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------ 366 (455)
T ss_pred HHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------
Confidence 2333333222 345667778889999999999999999999999887
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~-gw~~~f~i~~i~~~~~~~~~ 276 (540)
+++.+++++...++|..+||.+++++.+.. +|++.|++.+++.+++.+..
T Consensus 367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999998877 49999988877766555443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-10 Score=119.81 Aligned_cols=180 Identities=15% Similarity=0.079 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..+...+..++.....+++..++|.|+++..|++..++++....+.++..++.+++|+++||+ |+++....+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 455666666666777788889999999998999999999999999999999999999999997 6543222332222211
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+....... .+. .+.....+..++.|++..+..........|.+|++. |++
T Consensus 331 ~~~~~~~~~----~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 381 (438)
T TIGR00712 331 TIAVIVYWM----NPA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 381 (438)
T ss_pred HHHHHHHHh----cCC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eee
Confidence 111111000 010 122233334445555443333333456779999888 999
Q ss_pred HHHHHHHHHhHHH-HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 230 FFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 230 ~~~~~~~~~~lg~-~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~ 279 (540)
+.++++...++|+ .++|.+.+++.++.||.+.|++.++..+++.+..++.
T Consensus 382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999888877774 6899999999999999999988777666655555443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-10 Score=117.55 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH--HHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT--TIYL 147 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~--~l~~ 147 (540)
.++.+.+..++.....+.+..+.+.|+++.+|++..+.+...+...++..++.++.|+++||+.+||+..+... .+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45666666677777777788889999999999999999999999999999999999999998634444332221 1111
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++....... +. .+.....+..++.|+...+..+....+..|.+|++. |
T Consensus 297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 344 (379)
T TIGR00881 297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A 344 (379)
T ss_pred HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence 121111110 11 233444555566777666666667788899999988 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHH
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f 262 (540)
+++.++++...++|..++|.+.+++.++.||++.|
T Consensus 345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999999998754
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-09 Score=109.49 Aligned_cols=163 Identities=10% Similarity=-0.005 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
+..+...+..++....--++..+++.|+.+. +|++..+++...+.+.++..++++++++++||+ |+++++.++.++.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 3455555555555555667788999999854 799999999999999999999999999999998 9999988888777
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
+++.++.... .+.. ...+.++.|++.+...|...+...+.+|++..
T Consensus 219 ~~~~~l~~~~----------------------------~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~----- 264 (310)
T TIGR01272 219 VLLSIGAALT----------------------------HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHTS----- 264 (310)
T ss_pred HHHHHHHHHc----------------------------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----
Confidence 7766444332 1111 22355688999999999999999898886431
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~ 269 (540)
++++ +. ....+|+.+.|.+.|++.+..|.+.+|++..++.
T Consensus 265 ~asa--i~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 265 QGSG--IL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred hhHH--HH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4443 33 4566899999999999999989888887655543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-09 Score=108.85 Aligned_cols=177 Identities=15% Similarity=0.085 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
+.++......++...+.|..++|+.+++++..|++.+..+++...+.++..+|.+++|+++|| +.|+++.....+..+
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 367888889999999999999999999999999999999999999999999999999999998 788888888777776
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
..+.+.+.. .+.....+..++.|+..+........-.++ .-++. +.
T Consensus 289 ~~l~l~~~~---------------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~ 334 (394)
T COG2814 289 ALLALTFTG---------------------------ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------AD 334 (394)
T ss_pred HHHHHHHhc---------------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hH
Confidence 666655541 234455555566777766655555555566 33344 78
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
...+++....|+|..+|..++|.+.+++|+....++.++..++++++.+...+
T Consensus 335 ~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 335 LAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888999999999999999999999999999999998888877766443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-09 Score=112.70 Aligned_cols=148 Identities=16% Similarity=0.044 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009195 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (540)
Q Consensus 83 ~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~ 162 (540)
...+.+..+++.|+++ .|.+..+.+...+...++..++.+++|+++||+ |||+.+..+.++..++.+++...
T Consensus 245 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~------ 316 (426)
T PRK12307 245 GANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI------ 316 (426)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH------
Confidence 3344566778888875 699988889888888899999999999999998 99999988887766655444332
Q ss_pred CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHH
Q 009195 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (540)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~ 242 (540)
+. .+...+.+..+..+++..+..+..+.++.|.+|++. |++++++.+....+|+
T Consensus 317 -~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~ 370 (426)
T PRK12307 317 -PQ-------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSG 370 (426)
T ss_pred -cc-------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHH
Confidence 00 112222222222333333445667788899999988 9999999888889999
Q ss_pred HHHHHHHHHhhhccchHHHHHH
Q 009195 243 IVAFTLVVYIQMEHGWGSAFGA 264 (540)
Q Consensus 243 ~i~p~i~~~l~~~~gw~~~f~i 264 (540)
.++|.+.+++.+..|+....++
T Consensus 371 ~~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 371 TFNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHHHHHHHHHcccHHHHHHH
Confidence 9999999999998886654333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=105.67 Aligned_cols=173 Identities=18% Similarity=0.118 Sum_probs=136.3
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Q 009195 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (540)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~ 140 (540)
........+..|.++.+.++...+.+-..+..+.+.++.+|+|+..++.+.+..-+...+.+++.|.++||+ ||+-...
T Consensus 256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv 334 (459)
T KOG4686|consen 256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWV 334 (459)
T ss_pred cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhH
Confidence 333444556788888888888888888888889999999999999999999999999999999999999998 9998777
Q ss_pred HHHHH-HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 009195 141 IFTTI-YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (540)
Q Consensus 141 i~~~l-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~ 219 (540)
.+..+ ++++...+++. ...-+++..+.|+..........+.++-..|++
T Consensus 335 ~~a~~~tl~~H~~l~Ft------------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~ 384 (459)
T KOG4686|consen 335 ASACILTLLGHSGLFFT------------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEE 384 (459)
T ss_pred HHHHHHHHHHhhhHHhh------------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH
Confidence 66544 44466555553 223456777888887776666778888888988
Q ss_pred CchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc---hHHHHHHHHHHHH
Q 009195 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMG 270 (540)
Q Consensus 220 ~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g---w~~~f~i~~i~~~ 270 (540)
. .|++++..+...|+|-.+.|++++.+.++-| |--.|.+....+.
T Consensus 385 q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~a 432 (459)
T KOG4686|consen 385 Q------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMA 432 (459)
T ss_pred H------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHH
Confidence 8 9999999999999999999999999988655 4445544444433
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=116.04 Aligned_cols=174 Identities=11% Similarity=0.037 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH-----HHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTIY 146 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~-----~i~i~~~l~ 146 (540)
+.+.+..++.....+.+..+++.|+.+.+|++..+++...+...++..++.+++|+++||+ |||+ .........
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~ 333 (476)
T PLN00028 255 WILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQT 333 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHH
Confidence 4444444444455556667789999989999999999999999999999999999999997 8762 222111111
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
+.+...+.+... .+.....+..++.+++.+...+...++..+..| +.
T Consensus 334 l~~i~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------ 380 (476)
T PLN00028 334 LGGVFCIWLGRA--------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------ 380 (476)
T ss_pred HHHHHHHHhccc--------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------
Confidence 112111111100 223333444455566555555555566666544 45
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~ 280 (540)
|++..++.+...++|+.++|.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 888888877777777777766543 22334699999888877777766665543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-08 Score=108.25 Aligned_cols=173 Identities=11% Similarity=-0.101 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
++...+..++.....+......+.|+.+.+|++..+.+.......++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 34444444444454555556678888888999999888887777788889999999999998 99999999888777777
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
.+..+.... .. .+...++++.++.|++.+...+......... ++++ |++.
T Consensus 296 ~~~~~~~~~----~~-------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~ 345 (406)
T PRK15402 296 LLAALATVI----SS-------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTV 345 (406)
T ss_pred HHHHHHHHc----cc-------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHH
Confidence 766653110 00 2345566777888888887666655544333 3355 8999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~ 274 (540)
.+.+++...+|..+|+.+.+++.+..++....+...+..++.++
T Consensus 346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887766655554444444433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.9e-09 Score=112.40 Aligned_cols=191 Identities=13% Similarity=0.047 Sum_probs=143.1
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-HHH
Q 009195 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWT 138 (540)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR-~~~ 138 (540)
....+.+||.+++..+.+++..+.++.+.+..=+|+++ +.+.+.+..|++++...++..++.+..|+.+-|. |. |+-
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P 104 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP 104 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence 34557889999999999999999987777777788875 4777888889999999999999999999999997 75 777
Q ss_pred HHHHHHHHHHHHHHH-HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 009195 139 IAIFTTIYLAGLTGI-TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (540)
Q Consensus 139 i~i~~~l~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~ 217 (540)
++.+.++.++|.++. ++. . .|+ .....++++|++.|+|.|.. +..=+|+++...
T Consensus 105 li~s~ii~~~g~llY~~l~-~----~~~-------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~ 159 (488)
T KOG2325|consen 105 LIVSFLIAIIGNLLYLALA-Y----VPN-------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADAST 159 (488)
T ss_pred HHHHHHHHHHHHHHHHHHH-h----ccc-------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccC
Confidence 888888999998888 443 1 122 25678889999999998764 566788999877
Q ss_pred CCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhh----hc--------c-chHHHHHHHHHHHHHHHHHHHHhcccc
Q 009195 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----ME--------H-GWGSAFGALAIAMGISNMLFFIGTPLY 283 (540)
Q Consensus 218 ~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~----~~--------~-gw~~~f~i~~i~~~~~~~~~~~~~~~~ 283 (540)
.++ |.++++....+..+|..+||.+...+. .. + -+..+-|+.+++.++..++..+..++.
T Consensus 160 ~~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 160 VED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred ccc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 777 888888866666666666666554332 11 1 144566777777666666655544433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=114.43 Aligned_cols=164 Identities=8% Similarity=-0.083 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH-HHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL 147 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~-i~i~~~l~~ 147 (540)
..+...+..++....++++.+++|.|+++ ..|.+..+++.......++..++.+++|+++||+ |||+. +.+..++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence 45666777777788888899999999977 3477888889889999999999999999999998 87664 333333333
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++.++.... .+....+.+..+.++|.....+.......|.+|++. |
T Consensus 322 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~ 367 (412)
T TIGR02332 322 AGWLLASAT----------------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------R 367 (412)
T ss_pred HHHHHHHhc----------------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------H
Confidence 332221110 111111222223333333333344455567888888 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHH
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA 268 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~ 268 (540)
++++++.+...++|+.++|.+.+.+.+..| |+++|++.++.
T Consensus 368 ~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 368 AIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999999999998875 99988776554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-09 Score=109.65 Aligned_cols=153 Identities=9% Similarity=0.005 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
++......++....++... ...+.|.++.+|.+..+.+.......++..++.++.++++||+ |||+.+.++.++..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 4445555555556665555 5667777777999999999999999999999999999999997 9999988877666666
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
........ .+...+++..++.|++.+...+...+++.|.+|++. |++
T Consensus 291 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 337 (365)
T TIGR00900 291 ILVVGLTP---------------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR 337 (365)
T ss_pred HHHHHhhc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence 55554430 125566777889999999999999999999999888 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~g 257 (540)
..++++...++|..++|.+++++.+..|
T Consensus 338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 338 VFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999988654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-09 Score=108.10 Aligned_cols=182 Identities=13% Similarity=-0.009 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
+..|...+.-+...-+|-++..+++.|++++++.++.+++.....+.+...+.++++|+||||+ |.+|++++.....++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~ 296 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL 296 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence 3677788888888888888889999999999999999999999999999999999999999998 888888887777777
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
+..+....... .. .+.+...+++..+..++..|.-...+..+++..||+ + -+
T Consensus 297 ~~~~l~~~~~~---~~------------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~------~G 348 (417)
T COG2223 297 AAALLSLFLTG---FG------------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-E------TG 348 (417)
T ss_pred HHHHHHccccc---cc------------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-h------hh
Confidence 76666554110 00 002233333333444444444455556666666664 2 57
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHh
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~~~ 279 (540)
...++.....++|+..-|...+...+.+| +...|++.....+++.++....
T Consensus 349 ~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 349 AVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888889999999999999999888 8999998888777776665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8e-09 Score=111.21 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
....+...++..+++.......+.|++..+|.+..++++......++..++.++.|+++||+ |||+++.++.++..++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS 341 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 34455555566666555555677788878999999999888888888888889999999998 99999998888777766
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
+++..... . .+...+.+..++.|++.+...+....+..+.+|++. |+..
T Consensus 342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 390 (471)
T PRK10504 342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG 390 (471)
T ss_pred HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence 65544210 0 223334455667788888888888899999999887 9999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhccch
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~~~gw 258 (540)
+++++....+|..+|+.+++.+.+..|+
T Consensus 391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999888765554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.4e-08 Score=101.66 Aligned_cols=183 Identities=13% Similarity=0.126 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHH-HHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWT-IAIFTT 144 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~-i~i~~~ 144 (540)
+.-+.-.+..+..++.+-.+..++..|.++.+|++...++.+..+.-+.-++.-|+.|.++||. +||+|- ++++.+
T Consensus 12 ~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i 91 (467)
T COG2211 12 KEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI 91 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence 3344445566677777777888999999999999999999999999999999999999999985 476554 455667
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
.+.+...++..+ |+ .+ ........++.-++.+++.........++.+|+.++.++
T Consensus 92 p~~i~~~l~F~~-------p~--~~-------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E--- 146 (467)
T COG2211 92 PFAIVAVLLFIT-------PD--FS-------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE--- 146 (467)
T ss_pred HHHHHHHHHHcC-------CC--cc-------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH---
Confidence 777777777654 21 00 003445556666788999999998899999999976543
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhh-------ccchHHHHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~-------~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
|.+..++-....++|..+..++...+.. ..||+...++..++..+.++..++
T Consensus 147 --R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~ 205 (467)
T COG2211 147 --RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF 205 (467)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888886666555544433 235665555555555444444444
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-08 Score=106.23 Aligned_cols=167 Identities=7% Similarity=-0.097 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.++...+..++....+.....+++.|+. +.|.+..+.+...+...++..+..++.|++.||+ |+|+.+.++.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 4454555555555556566677788885 5899998889888888888888889999999997 9999999988888877
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+++... .+.+.+++..++.|++.+...+....++.+. ++++ +++
T Consensus 284 ~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~ 328 (382)
T PRK11128 284 WGLMGST----------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIR 328 (382)
T ss_pred HHHHHhh----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHH
Confidence 7666543 4566777788899999888888888887776 4444 667
Q ss_pred HHHHHH-HHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (540)
Q Consensus 230 ~~~~~~-~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~ 274 (540)
..+++. ....+|..+||.++|++.+..|+. .+++.+++.+++++
T Consensus 329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~ 373 (382)
T PRK11128 329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHH
Confidence 777765 556778889999999999998874 55555554444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.2e-09 Score=109.01 Aligned_cols=168 Identities=12% Similarity=0.074 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 74 IFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~yl~~~l---g~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
.++..++....+.......+.|+.+.+ +.+....+...+...+...++.++.|++.||+ |||+.+.++.++..++.
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~ 298 (396)
T TIGR00882 220 FVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRI 298 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHH
Confidence 333334444444344456678887765 45556678788888888888889999999998 99999999888888877
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
.+...+ .+...+++..++.|++..........+..+.++++. +++.
T Consensus 299 ~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~ 344 (396)
T TIGR00882 299 IGSSFA----------------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATI 344 (396)
T ss_pred HHHHhc----------------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEe
Confidence 665543 345566777888888876665666667788888777 7777
Q ss_pred HHH-HHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 231 FNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 231 ~~~-~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~ 276 (540)
.+. ++....+|..+++.++|++.+..||+..|.+.++..++..+..
T Consensus 345 ~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 345 YLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred ehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 766 6778899999999999999999999999988777765555443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=109.93 Aligned_cols=178 Identities=16% Similarity=0.072 Sum_probs=122.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH-------
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI------- 139 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i------- 139 (540)
+++.++...+..++....++.+..++|.|+++.+|++..++++..++..++..++.+++|+++||+ ++|+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~ 337 (465)
T TIGR00894 259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARK 337 (465)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHH
Confidence 345678888888899999999999999999999999999999999999999999999999999987 544211
Q ss_pred -HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 009195 140 -AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (540)
Q Consensus 140 -~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~ 218 (540)
..+......+..++..... . .+....++...+.+.+.++..+.......|..|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 392 (465)
T TIGR00894 338 IFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR 392 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh
Confidence 1111111111111111100 0 1223333344455555555555555555566654
Q ss_pred CCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHHHHH
Q 009195 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 219 ~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~---gw~~~f~i~~i~~~~~~~~~~ 277 (540)
. ++...++.+...++|+.++|.+.+++.+.. +|...|.+.++..+++.++..
T Consensus 393 -~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 393 -F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred -H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 5 899999999999999999999999987643 388888887777666655543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-08 Score=105.66 Aligned_cols=169 Identities=11% Similarity=-0.005 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~ 151 (540)
+......++.....+....++++|+.+.+|++..+.+...+...++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~ 280 (382)
T PRK10091 202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALL 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHH
Confidence 3333444444445555566778888888999999999999999999999999999999998 999999988887777765
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhh-hhhccCCCCCchhhhhhhhH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~d~~~~~~~~~~~~R~~~ 230 (540)
+..... .+.....+..++.+++.++..+.... ...+..+++. ++..
T Consensus 281 ~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~ 327 (382)
T PRK10091 281 MLFFFG---------------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA 327 (382)
T ss_pred HHHHHH---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH
Confidence 554321 12233444445555555443333333 3334333333 3433
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHH
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~~-~gw~~~f~i~~i~~~~~~~~~ 276 (540)
..+....+|..+||.+++++.+. .+|++.+.+.++..++.....
T Consensus 328 --~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 328 --GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 33556789999999999999885 579998888776655544443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.6e-09 Score=108.22 Aligned_cols=148 Identities=14% Similarity=0.032 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
+..+...+..++....++.+..+++ ++.+++|.+..+.+...+...++..++.+++|+++||+ |||+.+....+..++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 327 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVF 327 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHH
Confidence 3445555555566667767777776 77778999999999999999999999999999999998 998554444333333
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
..++.... .+...+++..++.|++.++..+...++++|.+|++. |+
T Consensus 328 ~~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g 373 (398)
T TIGR00895 328 AVLVGSTL----------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RA 373 (398)
T ss_pred HHHHHHHh----------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HH
Confidence 32222211 234456667788999999999999999999999888 99
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHh
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYI 252 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l 252 (540)
+.+++++....+|..++|.++|++
T Consensus 374 ~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 374 TGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999999875
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.1e-08 Score=98.85 Aligned_cols=163 Identities=12% Similarity=0.018 Sum_probs=111.2
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH
Q 009195 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (540)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~ 140 (540)
.+..++||..++...+..+.+.+... -......|.+..+| +...+-|...+|.+.+....+.+-|+.|++ |=|.+.+
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI-~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~l 113 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWI-QYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALL 113 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchhe-eehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHH
Confidence 35567777655555555555544432 12334557777788 666677888999999999999999999997 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhH--HHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 009195 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM--LYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (540)
Q Consensus 141 i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~ 218 (540)
++.++-.+|..+=..+... . .+ ... ...+.|..+.+...-.+...-+-..+-+|++
T Consensus 114 lgt~ln~iGa~Ir~iss~p-~-v~--------------------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~ 171 (480)
T KOG2563|consen 114 LGTVLNGIGAWIRLISSLP-F-VP--------------------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP 171 (480)
T ss_pred HHHHHHHHHHHHhhhccCc-c-cc--------------------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc
Confidence 9999999998887765320 0 01 112 2555666666666555444444556677898
Q ss_pred CCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 009195 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (540)
Q Consensus 219 ~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~ 254 (540)
++ |.++-.+-.++..+|.+++.++...+..
T Consensus 172 ~q------ra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 172 DQ------RAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred ch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence 88 8888887666666777777666555543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-08 Score=105.90 Aligned_cols=174 Identities=7% Similarity=-0.093 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.+......++...+......+.+.|+.+ .|++.++.+++..... ....++.+++|++.||+ |+|+.+.++.++..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 3444444455555565666777888875 7999999998888765 46667789999999998 9999998877665333
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLD 228 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~-~~~~~~~~R~ 228 (540)
.+....... .... .+...++....+.+++.|...+...+...+..++ +. ++
T Consensus 288 ~~~~~~~~~-~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g 339 (390)
T TIGR02718 288 ALLWFAQAA-FWLA---------------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AG 339 (390)
T ss_pred HHHHHHHHH-cccC---------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hH
Confidence 222221110 0000 1222333334455566666666667776676665 56 89
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~ 274 (540)
+.+++++...++|..++|.++|++.+..||+..|.+.+++.+++.+
T Consensus 340 ~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 340 TDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888877766555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.4e-09 Score=113.18 Aligned_cols=169 Identities=15% Similarity=0.102 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH------------HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Q 009195 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (540)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~------------~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~ 142 (540)
....++..+.+|++..+.|.+++ ..|++..+++. ......++..++.+++++++||+ |||++++++
T Consensus 294 ~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~ 371 (502)
T TIGR00887 294 AGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMG 371 (502)
T ss_pred HHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHH
Confidence 33445556677888777777775 67876432211 22333445566778899999998 999999888
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch
Q 009195 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (540)
Q Consensus 143 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~ 222 (540)
.++..++.+++...... .+ .+ ..+....+...++..+..+....+.+|.+|++.
T Consensus 372 ~~~~~~~~~~l~~~~~~---~~--------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~-- 425 (502)
T TIGR00887 372 FFILTVLFFVLGFAYNH---LS--------------------TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY-- 425 (502)
T ss_pred HHHHHHHHHHHHHHHHh---cc--------------------hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchhH--
Confidence 87777666555543110 00 11 111111111222223344566677899999999
Q ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhc----------cchHHHHHHHHHHHHHHHHH
Q 009195 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 223 ~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~----------~gw~~~f~i~~i~~~~~~~~ 275 (540)
|+++.++.+....+|+.++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 426 ----R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 426 ----RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred ----HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998774 33455666666555555443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.3e-09 Score=111.63 Aligned_cols=155 Identities=13% Similarity=0.096 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..+...+..++..+.+++...+++.|+++.+|.+..++++......++..++.+++|++.||+ |||+.+.++.++..++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG 334 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence 344455666667777778888899999999999999999999999999999999999999998 9999999888887777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
..++..... +. .+...+....++.|+|.+...+.......+.+|++. |++
T Consensus 335 ~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~ 384 (485)
T TIGR00711 335 FYWRAFTFT-----PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IAR 384 (485)
T ss_pred HHHHhccCC-----CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhH
Confidence 766553210 11 234455566788999998887777777788888877 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhc
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQME 255 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~ 255 (540)
+.++++...++|+.+|+.+.+.+.++
T Consensus 385 ~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 385 GSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-08 Score=107.72 Aligned_cols=157 Identities=10% Similarity=-0.038 Sum_probs=109.7
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccc
Q 009195 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (540)
Q Consensus 94 ~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (540)
+++.+.+|.+.....+......++..++.+++|+++||+ |||+.++++.++..++.+++...... +.
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~----~~-------- 361 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYT----QA-------- 361 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhc----Cc--------
Confidence 344467888877777777777778889999999999998 99999999999888887776543110 00
Q ss_pred cccCCCCCccchhHHHHHHHHHHHHHhhcc-cchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHH--
Q 009195 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV-- 250 (540)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~-- 250 (540)
.. .....+.++.+++.+. ..++...+++|.+|++. |++++++.+...++|..+++.+.+
T Consensus 362 -----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 362 -----------PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred -----------cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11 1222333444444433 34677899999999888 999999988888888877755544
Q ss_pred ----HhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 251 ----YIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 251 ----~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
++.+..+|++.|++.++..+++.++.++..+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred HhccchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 4446778888888877666655555544433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-08 Score=109.13 Aligned_cols=160 Identities=16% Similarity=0.057 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.++..++..++..++.+......+.|++..++ +....+.......++..++.+++++++||+ |||+++.++.++..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 45555666666666666555555555555555 455666777777888899999999999998 9999999998888877
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch-hhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLD 228 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~-~~~~R~ 228 (540)
.+.+.+.. .+...+++..++.|++.+...+...++++|..+.++.+ ....++
T Consensus 301 ~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 353 (437)
T TIGR00792 301 YLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG 353 (437)
T ss_pred HHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH
Confidence 76665420 23445566677889999988899999999987632110 001178
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccch
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw 258 (540)
..++++++...+|..+++.+.+++.+..||
T Consensus 354 ~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 354 LVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999999999877665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.8e-09 Score=103.65 Aligned_cols=147 Identities=13% Similarity=0.124 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhCCC--hHHHHHHHHHHHHHHHHHHhHHHHH
Q 009195 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFY-----------------VMHKS--FADSSNAVNNFLGISQASSVLGGFL 128 (540)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-----------------~lg~~--~~~~~~~~~~~~~~~~~~~~~~G~l 128 (540)
.+..+.+..+-|.+.+.+|++.-......+. ..+-. ...--.=+.+..+.-.-|.++.+++
T Consensus 325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i 404 (528)
T KOG0253|consen 325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI 404 (528)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence 3455666667788888888865433222221 11111 1111122233445667788999999
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhh
Q 009195 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 208 (540)
Q Consensus 129 sD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~ 208 (540)
.||+ |||+++..+.+++.+..+++..+.. ++ .-..+++.+|++ ..+...+.
T Consensus 405 verl-GRKkTMal~l~~f~iflfll~~c~~-----rn-------------------~~tvllf~araf----isg~fqva 455 (528)
T KOG0253|consen 405 VERL-GRKKTMALSLILFGIFLFLLTTCKT-----RN-------------------AYTVLLFTARAF----ISGAFQVA 455 (528)
T ss_pred HHHh-cchhHHHHHHHHHHHHHHHHHHhcC-----cc-------------------hhHHHHHHHHHH----HhchheEE
Confidence 9997 9999999999999998888776522 11 112344455544 44456677
Q ss_pred hhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHH
Q 009195 209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (540)
Q Consensus 209 ~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~ 249 (540)
..|-.|.+|+.. |+++.+.-.....+|+++.|+|+
T Consensus 456 YvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 456 YVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred EEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence 899999999999 99999998888999999999998
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-08 Score=107.83 Aligned_cols=169 Identities=10% Similarity=0.045 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (540)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~ 153 (540)
++...++.++....+...+|.+..+.+|.+....+++.+.+.+|..+|.++.+++.+++ ++++.+..+.+++.++.+.+
T Consensus 223 ~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~l 301 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLL 301 (524)
T ss_pred HHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHH
Confidence 33444444444444556678888999999999999999999999999999999999997 99999888888888777777
Q ss_pred HHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHH
Q 009195 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~ 233 (540)
+++ .+.+..++..++.|++.........+.+-+..|++. ||+.+++
T Consensus 302 al~----------------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si 347 (524)
T PF05977_consen 302 ALS----------------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI 347 (524)
T ss_pred hcc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence 665 456677778889999998888888899999999998 9999999
Q ss_pred HHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 234 ~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
++.....+..+|..+.|++.+.+|-+..+.+.++..+++.++..
T Consensus 348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888777666555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=104.61 Aligned_cols=174 Identities=13% Similarity=0.090 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.+.+-+++.++.+=+--.+.+....|....+|++..+..++.....+..+++++++|+|.||+ |-|+++.++.+++.+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 455555555666666667778888999999999999999999999999999999999999997 9999999999888776
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+...+. .....+++.-.+.|+..|+.++..=++.++++|+++ -++
T Consensus 332 ~~~~~~~----------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~ 377 (438)
T COG2270 332 ALYLIFL----------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR 377 (438)
T ss_pred HHHHHHc----------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence 5554442 223345555568999999999999999999999988 899
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~~ 278 (540)
+|++|++....++.+||...+.+.+.+| -|.++....++..++++++..
T Consensus 378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~ 427 (438)
T COG2270 378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR 427 (438)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence 9999999999999999999999988776 677776666666666655443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-08 Score=106.11 Aligned_cols=165 Identities=10% Similarity=0.018 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 74 IFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (540)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~yl-~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~ 152 (540)
..+..++.....++...+.+.|+ ++.+|++..++++....+.++..++.+++|+++||+ |||+++..+.++..++.++
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~ 341 (438)
T PRK10133 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI 341 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence 33444555566666677888886 567899999999999999999999999999999997 9999998887776665544
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 009195 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~ 232 (540)
..+. .+. ..+.+..+.|++.+...|+..+...+.++++. +.+.+
T Consensus 342 ~~~~----------------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~ 385 (438)
T PRK10133 342 SAFA----------------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSS 385 (438)
T ss_pred HHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchh
Confidence 4332 111 22455678999999999999999999987532 23333
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHH
Q 009195 233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 233 ~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~ 276 (540)
+... ..+|+.++|.+.+++.+.+| -+..|++.+++.+..+...
T Consensus 386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~~ 429 (438)
T PRK10133 386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_pred HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3222 33578888899999999887 7888887776655554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.6e-08 Score=100.60 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (540)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~ 152 (540)
...+...+....++....+.+.|+++.+|.++.+.+.+.....++..++.+++|+++||+ |||+.+.++.++..++.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~ 288 (385)
T TIGR00710 210 GYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVL 288 (385)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence 333334444555566667778888889999999999999999999999999999999998 9999998888777776666
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 009195 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~ 232 (540)
+...... +. .....++...++.|++.+...+.......|.+| +. |++..+
T Consensus 289 ~~~~~~~----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~ 338 (385)
T TIGR00710 289 LEITAIL----GL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASA 338 (385)
T ss_pred HHHHHHh----cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHH
Confidence 5543210 00 123344555677888888888888888888876 45 788888
Q ss_pred HHHHHHhH-HHHHHHHHHHHhhhccchHHHHHH
Q 009195 233 FFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGA 264 (540)
Q Consensus 233 ~~~~~~~l-g~~i~p~i~~~l~~~~gw~~~f~i 264 (540)
+++..... |+..++. .+.+.+..+|...+..
T Consensus 339 ~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 339 LFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHH-HHhccccChHHHHHHH
Confidence 87766554 5555554 4455554455544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=110.05 Aligned_cols=153 Identities=13% Similarity=0.052 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
......+..++..+.+++...+++.|++..+|++..+++.......++..++.+++|++.||+ |||+.+..+.++..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS 338 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 445555666667777777778889999999999999999999999999999999999999998 9999988888887777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+++..... . .+....+...++.|+|.|...+.......+..|+++ ++.
T Consensus 339 ~~~l~~~~~------~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~ 387 (495)
T PRK14995 339 FYGLAMTDF------S-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAA 387 (495)
T ss_pred HHHHHHhcC------C-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cch
Confidence 766544210 0 223445567788999999988888888888899888 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhh
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~ 254 (540)
+.++++...++|+.+|+.+.+.+.+
T Consensus 388 ~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 388 AGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=119.37 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
++..++..++..+..+.+..+++.|+.+.+|++.. +.+++.+...++..++.+++|+++||+ ++++++.++.++..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence 33444444444455556677889999999999998 899999999999999999999999997 9999888887777776
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+++.+. .+...++++.++.|++.++..+...+++.+.+|++. |++
T Consensus 313 ~~~~~~~----------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~ 358 (1146)
T PRK08633 313 LFLLPTA----------------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGK 358 (1146)
T ss_pred HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhh
Confidence 6666543 345566677788999999888889999999999998 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhh-ccchHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAI 267 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~-~~gw~~~f~i~~i 267 (540)
+++++++..++|..+++.+++.+.. .+++...|++.+.
T Consensus 359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999998888877776644 2345555554433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.8e-08 Score=101.48 Aligned_cols=153 Identities=15% Similarity=0.209 Sum_probs=103.7
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHH-HHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 009195 91 NMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (540)
Q Consensus 91 ~~~~yl~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 169 (540)
+.+.++.+++|++..+.+++.... .++..++.+++|+++||+ |||+.+.++.++..+..+.+...... +
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~----- 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----P----- 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----C-----
Confidence 445577788999999998887654 456788899999999998 99998887777666554433321110 0
Q ss_pred cccccccCCCCCccchhHHHHHHHH----HHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHH
Q 009195 170 DRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (540)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~ 245 (540)
.+...+++.. +..|++.+...+....++.+.+|.++ ++ ++.....+|..++
T Consensus 301 ---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~l~~~~~ 355 (402)
T PRK11902 301 ---------------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------YA----LLSALASVGRVYV 355 (402)
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------HH----HHHHHHHHHHHHH
Confidence 1233333333 35566667777777778888777544 43 3333345666656
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 246 p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
..++|++.+..||+..|.+.+++.++++++...
T Consensus 356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999999888777666555443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-07 Score=99.98 Aligned_cols=164 Identities=10% Similarity=-0.020 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH-
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG- 149 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~- 149 (540)
++......++.....++...+.++++.+++|++..+.+.+.....++..++.++.|++.||. +|+ .++++.++..+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHH
Confidence 34444444555555556666665555568899999999999999999999999999999985 544 433343333333
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.++.... .+...+.+..++.|++.+...+...+++.+..|+ + +++
T Consensus 296 ~~l~~~~----------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~ 340 (394)
T PRK10213 296 LVLTLWG----------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEK 340 (394)
T ss_pred HHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHH
Confidence 2322221 2345566677888999998888888888888873 3 445
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~ 271 (540)
..++++...++|..+|+.++|++.+..|++..+...++..++
T Consensus 341 ~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 341 AGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 556666677899999999999999999988887776654433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-08 Score=101.13 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..+...+..++....++++..+++.|+++ .|++..+.+...+...++..++.++.|+++||+-+||+++.++.++..++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 44555555566667777888889999975 79999999999999999999999999999999734666777777777777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+.+.+.. .+. .. ...++.|++.|...+...+.+.+..++++. +++
T Consensus 277 ~~~~~~~~---------------------------~~~-~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~ 322 (355)
T TIGR00896 277 LCGLLFAP---------------------------MHG-LW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAA 322 (355)
T ss_pred HHHHHHhh---------------------------hhH-HH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHH
Confidence 66665431 111 11 134578999988888877777665553221 677
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~g 257 (540)
..++.+...++|..++|.+.+++.+++|
T Consensus 323 ~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 323 LSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888777888899999999999998876
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.1e-08 Score=103.72 Aligned_cols=153 Identities=11% Similarity=0.021 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 009195 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (540)
Q Consensus 88 ~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~ 167 (540)
...++|.|+++..+ ++.+.++..+...++...+....+++.||.++.++.+..+.++..++.+++...
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------- 294 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------- 294 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------
Confidence 44567888876655 556777776666555554444446666554376677777777777776666543
Q ss_pred cccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHH
Q 009195 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (540)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~ 247 (540)
.+...+.+..++.+++.+...+...+++.|..|++. |++.+++++...++|..+||.
T Consensus 295 -----------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~ 351 (400)
T PRK11646 295 -----------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYI 351 (400)
T ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhccc
Confidence 234445556677788888888888999999999988 999999999999999999999
Q ss_pred HHHHhhhccc----hHHHHHHHHHHHHHHHHH
Q 009195 248 LVVYIQMEHG----WGSAFGALAIAMGISNML 275 (540)
Q Consensus 248 i~~~l~~~~g----w~~~f~i~~i~~~~~~~~ 275 (540)
++|++.++.+ ....+++..+..++..+.
T Consensus 352 l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 352 GGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred chHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 9999987642 244444444444444333
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-08 Score=103.66 Aligned_cols=170 Identities=12% Similarity=-0.012 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 73 FIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~yl~~~--lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
...+..++..+.+.....+.+.|+... .+.+....+.+.....+......++.|++.||. |||+.+.++.++..++.
T Consensus 210 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~~~ 288 (395)
T PRK10054 210 WFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVIGL 288 (395)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHHHH
Confidence 333444444444444445556666543 345555666777777666666677889999997 99999998888888877
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
+.+.+.. .+...+++..++.|+|.+...+...+++.+..|++. |++.
T Consensus 289 ~~~~~~~---------------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~ 335 (395)
T PRK10054 289 VGFIFSG---------------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASY 335 (395)
T ss_pred HHHHHcc---------------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceeh
Confidence 7665431 234455667788999988888888889999999887 8888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~ 277 (540)
++... ...+|..+||.++|++.++.|....|++.+...++++++..
T Consensus 336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 87654 56689999999999999999988888876666666655544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-07 Score=100.70 Aligned_cols=183 Identities=14% Similarity=0.010 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..|...+.-++...+|.+...++|.|+++.+ +.........+..+...+..+++|+||||+ ||+++++++.++..++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence 4566666667766666667778888988755 333333344456778888999999999998 9999999988877776
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc--------
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK-------- 221 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~-------- 221 (540)
..++.... |. ....+...+.++.+...++.|.-.+.+..++++.||+...
T Consensus 330 ~~~~~l~l------p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~ 387 (462)
T PRK15034 330 SALLFLTL------PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG 387 (462)
T ss_pred HHHHHHHh------cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence 65443321 11 0002455555555555555566566667777777764100
Q ss_pred -------hhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHH
Q 009195 222 -------DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 222 -------~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~ 277 (540)
..+..-+...++......+|+.+-|.+.++..+.+| +...|++..+..++++++.+
T Consensus 388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 000124566666777778888888988787777665 88888877666555544433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-06 Score=96.76 Aligned_cols=207 Identities=14% Similarity=0.103 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
+..+.+..+...+.. +......+.+.+.++++.++.+++.+.+-++..+...+..+.+-|. =|-+.+-++.++..+|.
T Consensus 99 l~~l~~~~~~q~l~~-~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYV-GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGS 176 (735)
T ss_pred HHHHHHHHHHHHhhh-hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHH
Confidence 344444445555554 6666677888899999999999999999999999999999999986 67778889999999999
Q ss_pred HHHHHhhhcccc------C---C--C------CCccccccc----ccCCCCC--ccch-hHHHHHHHHHHHHHhhcccch
Q 009195 151 TGITLCATMKVF------M---P--N------QDNCDRISQ----LLGSCEP--AKSW-QMLYLYTVLYITGFGAAGIRP 206 (540)
Q Consensus 151 ~~~~~~~~~~~~------~---~--~------~~~~~~~~~----~~~~~~~--~~~~-~~~~~~~~~~l~g~g~g~~~~ 206 (540)
+++++.-....- . . + .+.|+.... .+.+|+. .... -+.+++++.++.|+|...+++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 988875211000 0 0 0 000110000 0112221 1111 233667888999999999999
Q ss_pred hhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh------------------ccc-hHHHHHHHHH
Q 009195 207 CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------------EHG-WGSAFGALAI 267 (540)
Q Consensus 207 ~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~------------------~~g-w~~~f~i~~i 267 (540)
...+|+=|-...+. -...+++.+....+|+++|.++++++.+ +.| |+.+|.+...
T Consensus 257 lGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~ 330 (735)
T KOG3626|consen 257 LGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGA 330 (735)
T ss_pred CCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHH
Confidence 99999999888877 7788899999999999999999987643 123 8889988888
Q ss_pred HHHHHHHHHHHhcccccc
Q 009195 268 AMGISNMLFFIGTPLYRH 285 (540)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ 285 (540)
+.++..+.+++..+.+++
T Consensus 331 ~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 331 LLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHHHhCcccCcc
Confidence 887777777776655543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.8e-08 Score=106.13 Aligned_cols=131 Identities=15% Similarity=0.064 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHH
Q 009195 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (540)
Q Consensus 113 ~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (540)
...+....+.+++++++||+ |||+++.++.++..++.+++.+. +. .......+
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~-------~~-------------------~~~~~~~~ 415 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFV-------PV-------------------DLYFLRTA 415 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHc-------CC-------------------CchHHHHH
Confidence 44556677888899999997 99999999988877776665543 11 11223334
Q ss_pred HHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (540)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~ 272 (540)
..++.+++.++..+....+.+|.+|++. |++++++.+....+|+.++|.+.+ + ...++..++.+.++..+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHH
Confidence 4455666667777888899999999988 999999999999999999999988 4 3345666666666655555
Q ss_pred HHHHHH
Q 009195 273 NMLFFI 278 (540)
Q Consensus 273 ~~~~~~ 278 (540)
.++.++
T Consensus 488 ~~~~~~ 493 (505)
T TIGR00898 488 GILTLF 493 (505)
T ss_pred HHHHHc
Confidence 444433
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.5e-08 Score=103.65 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.++...+..++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 345555666666666666666667777888888776666555555666788889999999998 9999999999888887
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~-~~~R~ 228 (540)
.+.+.+. +. .+.+.+++..++.|+|.+...+...++.+|..|.++.+. ...++
T Consensus 308 ~~~~~~~-------~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G 361 (448)
T PRK09848 308 YLLFFWV-------SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG 361 (448)
T ss_pred HHHHHHc-------Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh
Confidence 7666542 11 245556667788999999999999999999887543110 01147
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccch
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw 258 (540)
..++++++...+|..+++.+.+.+.+..||
T Consensus 362 ~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 362 LTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 788889999999999999998887655444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-07 Score=97.40 Aligned_cols=166 Identities=10% Similarity=-0.038 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH---HHHHH-HHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY---WTIAI-FTT 144 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~---~~i~i-~~~ 144 (540)
+..+.+.+..++....+|++..++|.|+.+ .|++.. .+....+..+... +..++++||. .|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 356778888889999999999999999964 678764 4444444444333 3457888886 543 33222 332
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..+........ .+....++...+.+++.....+...++.+|.+|++.
T Consensus 266 ~~a~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---- 313 (368)
T TIGR00903 266 LIAAFFLALAFE----------------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL---- 313 (368)
T ss_pred HHHHHHHHHHHc----------------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh----
Confidence 222222222211 112233344456677777777778899999999999
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~ 276 (540)
|+++.++.+...++|+.++|.+.+.+.. +....|.+.++..+++.+..
T Consensus 314 --rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 314 --HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred --cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887763 56666666655555554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.1e-08 Score=114.42 Aligned_cols=184 Identities=6% Similarity=-0.165 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.++...+..++..+.++.+.++++.|+++.+|.+....+++.+.+.++..++.++.|+++|+. ++++.+.++.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 455556656666666667778899999999999999999999999999999999999999987 7666665555555444
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+.+.+... ....+....+. .-......+.+.++++.++.|++.+...+...+++.+.+|++. |++
T Consensus 305 ~~~l~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~ 370 (1140)
T PRK06814 305 GLDLAFASS-SVPAEPAQLKS-------ILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RAR 370 (1140)
T ss_pred HHHHHhccc-ccccccccccc-------hhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------cee
Confidence 443332100 00000000000 0000000134456677788899999999899999999999999 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhh-ccchHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~-~~gw~~~f~i~~i~ 268 (540)
.++.+++...+|..+++++++.+.. ..++...+++.+++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999988874 34566665544443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-07 Score=98.54 Aligned_cols=196 Identities=14% Similarity=0.068 Sum_probs=130.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+...+.....+...+...+.-.....+..+.+-+.-|++..++.++.........+..+++.++.||+ |||+.++++..
T Consensus 265 ~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~ 343 (485)
T KOG0569|consen 265 PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLS 343 (485)
T ss_pred cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHH
Confidence 33444566666666666665544444456667778899999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhc-ccchhhhhhhhccCCCCCchh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDY 223 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~d~~~~~~~~~ 223 (540)
+..+..+++........... .+-....+++.++..++.+ +..|...-+.+|+||+..
T Consensus 344 ~~~~~~~~~~~~~~l~~~~~-------------------~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~--- 401 (485)
T KOG0569|consen 344 LMAVALLLMSIALFLSNSFG-------------------SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA--- 401 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc---
Confidence 98888877776543110000 0000112334444433333 345677788899999998
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 009195 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL 287 (540)
Q Consensus 224 ~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~~ 287 (540)
|..++++-+....+...+..+.-..+.+..|- ..|.+.++..++..+..+...|+.+.+.
T Consensus 402 ---R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 402 ---RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 99999886666656555555555566666664 4555556656666666666666665543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.3e-06 Score=85.61 Aligned_cols=142 Identities=14% Similarity=0.019 Sum_probs=98.5
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hHHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 009195 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWT-IAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (540)
Q Consensus 96 l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~G-----R~~~-i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 169 (540)
+..+++++....+..+.+-.+... ..+..|+.||+. + ||.- +..+.++...+..+...+.... ...
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l--~~~---- 77 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLL--AES---- 77 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHH--ccc----
Confidence 456788888888877776665544 578999999997 6 5544 4455666666666655543211 010
Q ss_pred cccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHH
Q 009195 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (540)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~ 249 (540)
....+.+.........+...+.|+|.+.......++++|..|+++ |.+..++.+....+|..++.++.
T Consensus 78 ------~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 78 ------GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred ------ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 000011111122233445567899999999999999999999999 99999998888889999999999
Q ss_pred HHhhhccc
Q 009195 250 VYIQMEHG 257 (540)
Q Consensus 250 ~~l~~~~g 257 (540)
+.+.+.+.
T Consensus 146 g~lL~~~s 153 (403)
T PF03209_consen 146 GRLLDPFS 153 (403)
T ss_pred HHHccccC
Confidence 98887766
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-06 Score=90.66 Aligned_cols=127 Identities=13% Similarity=0.002 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhCC---Ch----HHHHHHHHHHHHHHHHHHhHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009195 89 SVNMVTFMFYVMHK---SF----ADSSNAVNNFLGISQASSVLGGFLADAYLG-RYWTIAIFTTIYLAGLTGITLCATMK 160 (540)
Q Consensus 89 ~~~~~~yl~~~lg~---~~----~~~~~~~~~~~~~~~~~~~~~G~lsD~~~G-R~~~i~i~~~l~~i~~~~~~~~~~~~ 160 (540)
....+.|+++..+. ++ +..+...++..+..++..|+-|-++|+. | ||+.+.+..++.++..+.+.++.
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~--- 110 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP--- 110 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC---
Confidence 34567888877654 33 2335666667777778888999999987 7 55666677777777777776651
Q ss_pred ccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhH
Q 009195 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (540)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~l 240 (540)
+ +..+....+...+..++.........+++.|..++++-+ |.+..++ -...+
T Consensus 111 ----~------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~----riS~lg~--~~gyl 162 (438)
T COG2270 111 ----P------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG----RISGLGW--ALGYL 162 (438)
T ss_pred ----C------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC----ccccccc--ccccc
Confidence 1 023444555556778888888888899999999987744 4444433 22334
Q ss_pred HHHHHHH
Q 009195 241 GAIVAFT 247 (540)
Q Consensus 241 g~~i~p~ 247 (540)
|+.+.-+
T Consensus 163 gs~i~li 169 (438)
T COG2270 163 GSVILLI 169 (438)
T ss_pred cchHHHH
Confidence 4444433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=97.66 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
+.+..++..|...+.+ ---..+..+.+...+++.++..++.+.++.-..+.+.++||+.||.+|-|.--++-+.+..+|
T Consensus 45 ~lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 4444444444443333 222345566666777777788888899998889999999999999999877666666667777
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.++.+.- +++ +..+++..+|++.|+|.-........+..-+|..++ ...
T Consensus 124 qliFa~G--------------gi~-----------~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~ 172 (459)
T KOG4686|consen 124 QLIFAAG--------------GIS-----------HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNF 172 (459)
T ss_pred HHHHHhc--------------hHH-----------HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccc
Confidence 7776542 111 467889999999999987777888999999999999 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhcc
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~ 256 (540)
.+++......+|...-..+.+++.+..
T Consensus 173 vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 173 VFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred hhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 999987777788776666667776543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=97.68 Aligned_cols=145 Identities=10% Similarity=0.021 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH-HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
..+.+.+..++..+.++...++++.|+++ +|++..+.+.+..... ++..++.+++|+++||+ |||+.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 45556666666778888888899999987 9999999887777655 57788999999999998 999999888887777
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
+..+..+..... . +.+ .+ ..+...+....++.+++.+...+...+++.|.+|++. |+
T Consensus 288 ~~~~~~~~~~~~--~----------~~~--~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 344 (356)
T TIGR00901 288 TNAGFVWLASNG--H----------HDG--IT---FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA 344 (356)
T ss_pred HHHHHHHHHhcC--c----------ccc--cc---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence 655444321100 0 000 00 0123456667778899999999999999999999999 99
Q ss_pred hHHHHHHHHHh
Q 009195 229 RFFNFFYLSVT 239 (540)
Q Consensus 229 ~~~~~~~~~~~ 239 (540)
+.+++++...+
T Consensus 345 ~~~g~~~~~~~ 355 (356)
T TIGR00901 345 TQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHh
Confidence 99999776554
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-07 Score=97.95 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
|....+++..++..++........+.|.+..+|.+ ...+.......++..++.+++++++||+ |+|+++.++.++..+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 35666777777777777777777788888888887 4556677778888899999999999998 999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHL 227 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~-~~~R 227 (540)
+.+++.+... .+...+++..++.|++.++......++++|..+.++.+. +...
T Consensus 303 ~~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~ 356 (428)
T PF13347_consen 303 GFLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRRE 356 (428)
T ss_pred HHHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCch
Confidence 8888777521 367788888899999999999999999999998543110 1115
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccch
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw 258 (540)
+..++.+.+...++.++++.+.+.+.+..|+
T Consensus 357 g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 357 GMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 7777788889999999999998887665443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.5e-07 Score=89.64 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=110.6
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 009195 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (540)
Q Consensus 96 l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (540)
+-++.|++..+.+.+.....+...+..++.|.++||+ |||+..++..+++.+..+..-.
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~-------------------- 118 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS-------------------- 118 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc--------------------
Confidence 3467999999999888888888888889999999998 9999999999988887654322
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC-chhhhhhhhHHHHHH-HHHhHHHHHHHHHHHHhh
Q 009195 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS-KDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQ 253 (540)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~-~~~~~~R~~~~~~~~-~~~~lg~~i~p~i~~~l~ 253 (540)
.+...++++|++.|++......+..+.+.....++. +++ ....-++... +...+-++++.+++.++.
T Consensus 119 ---------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~ 187 (354)
T PF05631_consen 119 ---------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLA 187 (354)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence 467889999999999999988887766533322222 211 1333333322 222334455555666666
Q ss_pred hccch--HHHHHHHHHHHHHHHHHHHHhccccccc
Q 009195 254 MEHGW--GSAFGALAIAMGISNMLFFIGTPLYRHR 286 (540)
Q Consensus 254 ~~~gw--~~~f~i~~i~~~~~~~~~~~~~~~~~~~ 286 (540)
+..+. ..+|...+++.+++.++....+++....
T Consensus 188 ~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 188 DWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 65554 7788888887777776666555554433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.3e-07 Score=95.01 Aligned_cols=157 Identities=6% Similarity=-0.068 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 009195 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (540)
Q Consensus 83 ~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~ 162 (540)
.........++.|+++.+|.+..+.+.......++..++.++.+++.||. ++++++..+..+ .+..+.+...
T Consensus 219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~------ 290 (393)
T PRK11195 219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ------ 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH------
Confidence 33344445567788889999999999999999999999999999999997 988887776533 2222222221
Q ss_pred CCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHH
Q 009195 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (540)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~ 242 (540)
.+.....+..++.|++.+...+...+.+.+..|++. ++++.+++.++..++|.
T Consensus 291 ----------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~ 343 (393)
T PRK11195 291 ----------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAM 343 (393)
T ss_pred ----------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHH
Confidence 234445566678899988877777788777644432 16889999999999999
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 243 ~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~ 275 (540)
.++..+.+.+ ...|-++.+.+..+..++.+.+
T Consensus 344 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 344 LLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 9999888865 5567666666555544444433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.8e-07 Score=90.20 Aligned_cols=170 Identities=15% Similarity=0.127 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..|.+.+..-++++.+|.+..++|.++. +.|+|..+++..++...+......++.-.+++|.--+|+........+.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 5677777788899999999999999886 679999999999999999999999999999998767899999999999999
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+.+.+. |. +...+. .+++|+|.|+..+....++.+-.++.+. -++
T Consensus 288 ~~G~~~~-------P~--------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~ 333 (395)
T COG2807 288 LVGLLLA-------PG--------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAA 333 (395)
T ss_pred HHHHHHh-------hh--------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHH
Confidence 9888765 21 222222 4899999999999999999988765441 444
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~ 274 (540)
..++-+-...+-+.+||.+.|++.|.+| |+..+...+...++..+
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i 379 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI 379 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 4455555566668889999999999876 88777665555444333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-06 Score=90.52 Aligned_cols=147 Identities=10% Similarity=-0.093 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~ 151 (540)
+...+..++...+.+....+.+.++.+.+|++..+.+.......++..++.+++|+++||+ |||+++.++.++..+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~ 275 (377)
T PRK11102 197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI 275 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 3333444444455555566667788888999999999999999999999999999999998 999999988876544333
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~ 231 (540)
.+..... .+ .+...+.++..+.+.+.+...+.....+.|..| +. |++..
T Consensus 276 ~~~~~~~----~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~ 324 (377)
T PRK11102 276 WLVVSAL----LD--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTAS 324 (377)
T ss_pred HHHHHHH----Hh--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHH
Confidence 2222110 00 123333344444444455555555666777766 55 77777
Q ss_pred HHHHHH-HhHHHHHHHHHHH
Q 009195 232 NFFYLS-VTVGAIVAFTLVV 250 (540)
Q Consensus 232 ~~~~~~-~~lg~~i~p~i~~ 250 (540)
++++.. ..+|+.+++.++.
T Consensus 325 ~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 325 SLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 775443 3466666666543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-06 Score=90.30 Aligned_cols=148 Identities=11% Similarity=-0.004 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009195 81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160 (540)
Q Consensus 81 ~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~ 160 (540)
....++....+.+.|++ ++|++..+.++......++..++.++++++.||+ |||+.+....++..++.+.+......
T Consensus 215 ~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 291 (401)
T PRK11043 215 CSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL- 291 (401)
T ss_pred HHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 33444555566677775 5799999999887777888889999999999997 99988766655555544333222110
Q ss_pred ccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhH
Q 009195 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (540)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~l 240 (540)
.. .+...++++..+.|++.+...+.......|.+| +. |+++.++++.....
T Consensus 292 ---~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~~~~ 342 (401)
T PRK11043 292 ---SH-------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQNTLQLG 342 (401)
T ss_pred ---cc-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHHHHHHH
Confidence 00 123344455667788888888888887778776 45 89999998887777
Q ss_pred HHHHHHHHHHHhhhccchHH
Q 009195 241 GAIVAFTLVVYIQMEHGWGS 260 (540)
Q Consensus 241 g~~i~p~i~~~l~~~~gw~~ 260 (540)
++.+++.+.+.+.+......
T Consensus 343 ~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 343 LCFLASLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHHHHHHccCCChhHH
Confidence 88888888888876443433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=9e-06 Score=86.80 Aligned_cols=162 Identities=15% Similarity=0.056 Sum_probs=116.8
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc--cc--hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 009195 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (540)
Q Consensus 92 ~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~--~G--R~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~ 167 (540)
...|+++++|+++++.....++..+-..+- ++.|.++|-+ +| ||+-++++.++..++.+.++.. +.
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~-------~~-- 81 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL-------PA-- 81 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc-------cc--
Confidence 456789999999999887777666655554 6789999986 35 5555566666665555554442 11
Q ss_pred cccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHH
Q 009195 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (540)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~ 247 (540)
...+.....+..++..+|........-++..|....+... |+...++.+....+|++++..
T Consensus 82 ---------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~ 142 (433)
T PF03092_consen 82 ---------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSL 142 (433)
T ss_pred ---------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHH
Confidence 0023344555667788888888889999999998654422 788888888899999999999
Q ss_pred HHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 009195 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (540)
Q Consensus 248 i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~ 282 (540)
++|++.+..+++..|.+.+++..+..+..++..++
T Consensus 143 l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 143 LSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999988877766665555554443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-07 Score=96.13 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (540)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~-~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~ 151 (540)
......++..+.++....+++.|+.+.+|++ ..+.+...+...++..++.++.|+++||+ |+++...+......++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 288 (352)
T PF07690_consen 210 ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGAL 288 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH
Confidence 3444445555566667788888989999999 78999999999999999999999999997 988888877777666666
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~ 231 (540)
.+.+.... .+....++..++.|++.+...+....++.|.+|++. |++..
T Consensus 289 ~~~~~~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 337 (352)
T PF07690_consen 289 GLLLLPFS-------------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAF 337 (352)
T ss_dssp HHCCSHHH-------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHH
T ss_pred HHHHHHHh-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence 55543210 234556667788999999999999999999999988 99999
Q ss_pred HHHHHHHhHHHHHHH
Q 009195 232 NFFYLSVTVGAIVAF 246 (540)
Q Consensus 232 ~~~~~~~~lg~~i~p 246 (540)
++++...++|+.+||
T Consensus 338 g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 338 GLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=101.34 Aligned_cols=175 Identities=14% Similarity=0.099 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch--HHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR--YWTIAIFTTIY 146 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR--~~~i~i~~~l~ 146 (540)
+..+...+...+..++++.-..+++.|.+ ..+++..+++..+++..+...++.++.|+++|+. .. +.+..++.++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 46777888888888888888888888888 8999999999999999999999999999999986 63 33444444444
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.++.+.++++ .+...++..-.+.|+..|...+..+..+.|..+.+.
T Consensus 376 gl~~~~~p~~----------------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------ 421 (509)
T KOG2504|consen 376 GLARLFLPFA----------------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------ 421 (509)
T ss_pred HHHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence 4444444443 356677777789999999999988899999999888
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHh
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~~~ 279 (540)
-..++++..+...++..+||.+++++.+.+| |...|+...+..+++.+..++.
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence 8999999999999999999999999999888 9999998888877776655543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-06 Score=93.95 Aligned_cols=165 Identities=12% Similarity=-0.016 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
|.++.+++..++..+..+......+.|.+..++ +....+.+.....++..++.++.++++||+ |+|++++++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 556667777777777776666665544444444 455556666666678888899999999998 999999988887776
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCch-hhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL 227 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~-~~~~R 227 (540)
+.+.+.+... .+. .+...+++..++.|++.+...+...++++|..+.++-+ .+...
T Consensus 309 ~~~~~~~~~~----~~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~ 365 (473)
T PRK10429 309 SCGVLLLMGL----AAP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE 365 (473)
T ss_pred HHHHHHHHhc----cCc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence 6655543211 011 34455666667888999998899999999997733210 00013
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccch
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw 258 (540)
+..+++..+...+|..+++.+.+++.+..|+
T Consensus 366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4466778888899999999999988765554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-06 Score=89.79 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (540)
Q Consensus 87 ~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~ 156 (540)
....+.+.|+++++|++..+.+.......++..++.++.|+++||+ |||+.+.++..+..++.+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556778888999999999888888999999999999999997 99999999988888877776654
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-06 Score=92.38 Aligned_cols=164 Identities=9% Similarity=-0.043 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.+..++..++......++.++++.|+.+. .+.+...++...+.+..+..++.+++|+++||+ ++|+++.++.++.++.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 34445555555555556778888998653 245555556667777788899999999999998 9999988888777776
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.++.... .+. ...+..++.|++.+.++|.+.+...+..+++. +..
T Consensus 313 ~ll~~~~----------------------------~~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~ 357 (410)
T TIGR00885 313 CLGSIFA----------------------------GGH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYG 357 (410)
T ss_pred HHHHHHc----------------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhh
Confidence 6665553 111 22456677888888888999999999998655 322
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMGIS 272 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~------gw~~~f~i~~i~~~~~ 272 (540)
...+ ..+ .+|+.+.|.+.|++.|.. +.+..|.++.++.+..
T Consensus 358 s~~l-~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 358 AAGL-VMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred HHHH-HHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 2222 223 399999999999999954 4778888776665443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.8e-07 Score=94.46 Aligned_cols=160 Identities=12% Similarity=0.053 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
.+.++...++...+........+.|.+..++. ....+.......+...++.+++++++||+ |+|+.+.++.++..+..
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~ 308 (444)
T PRK09669 231 WRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 33344444444344432223333333333333 33334455556677778888999999997 99999988876655443
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh-hhhhhh
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDR 229 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~-~~~R~~ 229 (540)
+...+. +. .+...+++..++.|++.++..+...++++|..+.++.+. +...+.
T Consensus 309 ~~~~~~-------~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~ 362 (444)
T PRK09669 309 ALIFFI-------PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGL 362 (444)
T ss_pred HHHHHh-------Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchH
Confidence 332221 11 345566777788999999999999999999987433110 011355
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccch
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw 258 (540)
.++.+.+...+|.++|+.+++++.+..|+
T Consensus 363 ~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 363 VFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67778889999999999999988776665
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-06 Score=92.68 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch----HHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR----YWTIAIFTT 144 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR----~~~i~i~~~ 144 (540)
+.+|.+.+..++.+.+++.+..++|.|+.+.+|++..+.++..++-.+.+.+..+++|.++||+..| +.+..+...
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 4789999999999999999999999999999999999999999999999999999999999997221 122222222
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccc-hhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS-WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~ 223 (540)
+...+...+.+... +.+ |. +. .....+.++..+.|+..++..-+ ..|..| +.
T Consensus 338 i~~~~~ai~l~~l~---~~~----~~------------~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~ap-q~--- 390 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLA---FTS----DE------------HRLLAVILLTIAIGLSGFNISGFYKN----HQDIAP-QH--- 390 (466)
T ss_pred HHHHHHHHHHHeee---ecC----CC------------cchHHHHHHHHHHHHcccchhhhHhh----hhhccc-hH---
Confidence 22222222211110 111 10 00 11122222223333333333222 222233 23
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhc---cchHHHHHHHHHHHHHHHHHHHH
Q 009195 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 224 ~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~---~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
-+..+++.+...++.+.++|.+.+.+..+ ..|++.|.+.+++.+++.+++.+
T Consensus 391 ---a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 391 ---AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 67888888999999999999999998842 36999999999988887766544
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.3e-07 Score=92.22 Aligned_cols=139 Identities=11% Similarity=-0.000 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~ 150 (540)
.+...+..++.....+.+..+.+.|+++.+|++..+++...+...+...++.+++|+++||+ |||+.+..+..+..++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence 34444445555556667778889999999999999999889989999999999999999998 99988877776666655
Q ss_pred HHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
.++.+... +. .+...+++..++.+++.|...+...++.+|.+| ++ +++.
T Consensus 306 ~~~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~ 354 (366)
T TIGR00886 306 FLVVLGLV-----SP-------------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAV 354 (366)
T ss_pred HHHHhcCC-----Cc-------------------chHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccH
Confidence 55543211 00 034444445555566666666667777888887 35 8888
Q ss_pred HHHHHHHHhHH
Q 009195 231 FNFFYLSVTVG 241 (540)
Q Consensus 231 ~~~~~~~~~lg 241 (540)
.++.+...++|
T Consensus 355 ~g~~~~~~~~g 365 (366)
T TIGR00886 355 SGLVGAIGNLG 365 (366)
T ss_pred HHHHHHhccCC
Confidence 88877766665
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.7e-09 Score=111.98 Aligned_cols=205 Identities=14% Similarity=0.080 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 009195 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (540)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~ 153 (540)
+++..+.+ +..++......+-+.+.++++.++++++.+.+-++..+..++..++++|- -|-|.+-++.++..+|.+++
T Consensus 8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHH
Confidence 34444445 55556666667788999999999999999999999999999999999985 67777888899999999988
Q ss_pred HHhhhccccCC-C------------CCcc----ccccc-ccCCCC----CccchhHHHHHHHHHHHHHhhcccchhhhhh
Q 009195 154 TLCATMKVFMP-N------------QDNC----DRISQ-LLGSCE----PAKSWQMLYLYTVLYITGFGAAGIRPCVSSF 211 (540)
Q Consensus 154 ~~~~~~~~~~~-~------------~~~~----~~~~~-~~~~~~----~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 211 (540)
++.-....-.. . ...| +.... ....|. .....-...++++.++.|+|....++...+|
T Consensus 86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY 165 (539)
T PF03137_consen 86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY 165 (539)
T ss_dssp ------------------------------------------------------------------SSS-----------
T ss_pred hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence 87532211100 0 0011 00000 000111 1111124567788999999999999999999
Q ss_pred hhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh---------------------ccc-hHHHHHHHHHHH
Q 009195 212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------------------EHG-WGSAFGALAIAM 269 (540)
Q Consensus 212 ~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~---------------------~~g-w~~~f~i~~i~~ 269 (540)
+=|-.+++. -...+++++....+|+++|.++++.+.+ ..| |+.+|.+.+++.
T Consensus 166 iDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 166 IDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999888 7788889889999999999888876532 123 888888777776
Q ss_pred HHHHHHHHHhccccccc
Q 009195 270 GISNMLFFIGTPLYRHR 286 (540)
Q Consensus 270 ~~~~~~~~~~~~~~~~~ 286 (540)
++..+.+++..|+++..
T Consensus 240 ~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp -----------------
T ss_pred HHHHHHHHcCCccCCCc
Confidence 66666665555544433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-05 Score=84.22 Aligned_cols=139 Identities=12% Similarity=-0.059 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCc
Q 009195 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (540)
Q Consensus 89 ~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~ 168 (540)
....+.|+++.+|.+..+.++.......+..++.++.+++.||+ ||+.... .....++.+....... ...
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~~--~~~~~~~~~~~~~~~~----~~~--- 296 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQS--VICCLLAGLLMWIPGW----FGV--- 296 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHH----hcc---
Confidence 34456688888999999988888888888888888889999987 7433322 2222222222211100 000
Q ss_pred ccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHH
Q 009195 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (540)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i 248 (540)
.+...++.+.++.|++.+...+....+..|.+| +. +++..++.+...++|+.+++.+
T Consensus 297 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~~~ 353 (394)
T PRK11652 297 ----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAALL 353 (394)
T ss_pred ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHHHH
Confidence 234456667788899999888999999999887 35 7888888888889999999999
Q ss_pred HHHhhhccchHH
Q 009195 249 VVYIQMEHGWGS 260 (540)
Q Consensus 249 ~~~l~~~~gw~~ 260 (540)
++++.....+..
T Consensus 354 ~~~~~~~~~~~~ 365 (394)
T PRK11652 354 SAMLPQTGQFSL 365 (394)
T ss_pred HHHccCCchHHH
Confidence 988866544443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-05 Score=84.24 Aligned_cols=176 Identities=8% Similarity=0.009 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (540)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~ 152 (540)
..++..++.....-....+...|+++.-|.+....+...++..+.-.+.-.+.+++-.|+ |-+++++++.+.+++=+.+
T Consensus 211 ~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l 289 (400)
T PF03825_consen 211 VFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLL 289 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence 333444455555545567778898765557777777666666777777777889999997 9999999999998887666
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHH
Q 009195 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~ 232 (540)
++.... |. .......+.+..+.|+..+........++.+.+|++. |+++-+
T Consensus 290 ~a~~~~-----~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~ 340 (400)
T PF03825_consen 290 YAYFSD-----PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQG 340 (400)
T ss_pred HHHhcC-----Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHH
Confidence 665411 00 0011222334567999999999999999999999999 999999
Q ss_pred HHHHH-HhHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHHHHHH
Q 009195 233 FFYLS-VTVGAIVAFTLVVYIQMEHGWG------SAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 233 ~~~~~-~~lg~~i~p~i~~~l~~~~gw~------~~f~i~~i~~~~~~~~~~~ 278 (540)
+++.. ..+|..+|..++|++.+++|-+ ..+.+.++..++..+++.+
T Consensus 341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 97664 5799999999999999987643 3444455544444444444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.7e-06 Score=89.51 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHH----HHHHHHHHHHHHHHHHhHHH----HHhhhccchHHHH--
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLGG----FLADAYLGRYWTI-- 139 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~----~~~~~~~~~~~~~~~~~~~G----~lsD~~~GR~~~i-- 139 (540)
.++.+++..++..+.+....+.++.|..+..+.+... .++..+...+...+..++.. ++.+|-.+.+...
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 4455555555666666666777788877765543211 44555555555555555544 4555421333333
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCC
Q 009195 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (540)
Q Consensus 140 ~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~ 219 (540)
.+++++..++.+.+++..... . .+...+.+++.+..++.++|.....|...++.++..|++
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~---~----------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~ 413 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFA---D----------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR 413 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---C----------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence 677888877777766542110 0 011146788888999999999999999999999999998
Q ss_pred CchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 220 ~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
. |++.++++.+...+|..+++.+.....+..+|...|....+..++..++++.
T Consensus 414 ~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 414 L------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999998887777777887777666655555444444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=84.46 Aligned_cols=177 Identities=8% Similarity=0.069 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg---~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
..|...+........++..-...+.|.+..++ .++...+...+.-.+.-.+.-.+..++-+|+ |-|+.++++.++.
T Consensus 221 ~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i~ 299 (412)
T PF01306_consen 221 NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVIM 299 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHH
Confidence 45554444444333444333345677776544 2344456777777777777778889999998 9999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
++=.++++++ .+...+.+.+.+.|+-.+.......-|+++.+|++.
T Consensus 300 ~iRi~~~~~~----------------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------ 345 (412)
T PF01306_consen 300 AIRIIGSGFA----------------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------ 345 (412)
T ss_dssp HHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------
T ss_pred HHHHHHHhhh----------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------
Confidence 9988888876 467788899999999999999999999999999887
Q ss_pred hhhHHHH-HHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 227 LDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 227 R~~~~~~-~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
.++...+ ++++..+|..+.+.++|++.++.|++..|++.+.++++..++..+..+
T Consensus 346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 7788877 678889999999999999999999999898777766655555555433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.1e-05 Score=81.20 Aligned_cols=159 Identities=15% Similarity=0.116 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhhCCChHHH-HHHHHH----HHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 009195 89 SVNMVTFMFYVMHKSFADS-SNAVNN----FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (540)
Q Consensus 89 ~~~~~~yl~~~lg~~~~~~-~~~~~~----~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~ 163 (540)
..+...+.....+.+.... ...... ..+...+..++.|.++||+ |||..+.+..+...+..+...+.
T Consensus 41 ~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~------- 112 (463)
T KOG2816|consen 41 MTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ------- 112 (463)
T ss_pred hhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH-------
Confidence 3555556655555443222 222222 2456677788999999998 99999999988877776666553
Q ss_pred CCCCcccccccccCCCCCccchhHHHHHHHHHHHHH--hhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHH
Q 009195 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGF--GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (540)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg 241 (540)
. +++++ +.++ +.+.+.+...++++|....+. |...+++.+-....+
T Consensus 113 ----------------------~-~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~~ 160 (463)
T KOG2816|consen 113 ----------------------G-YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGAG 160 (463)
T ss_pred ----------------------H-HHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHHH
Confidence 1 22222 3333 234566788899999999887 999999988888889
Q ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 009195 242 AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL 287 (540)
Q Consensus 242 ~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~~ 287 (540)
..++|.+++++.+..|....|.+.++..++..+...+..++..+++
T Consensus 161 ~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 161 LVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred HhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 9999999999999999999999999988888777776666654443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-05 Score=77.77 Aligned_cols=182 Identities=10% Similarity=0.066 Sum_probs=114.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
||...........+.. ..|... .....+++.+|++.++...+.....+|..+| ++.|.+.|++ |.+.++.++.+..
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs-~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFS-AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLG 76 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchh-hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHH
Confidence 4544444444444332 223333 3366899999999999999999999999886 7889999997 9999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.+|+.++.++... ..+. ...+.+.+..++.|.+.+.+....-....+.||. +
T Consensus 77 ~~GY~~~~l~~~~--~i~~-------------------~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------ 128 (250)
T PF06813_consen 77 FVGYGLLWLAVSG--RIPS-------------------LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------ 128 (250)
T ss_pred HHHHHHHHHHHhC--ccCc-------------------cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence 9999988876331 1110 2345566666666666555555555556688984 6
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~ 280 (540)
||+..++.--...+++.+-..+...+...-.-...+.+.....++.++..++.+
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence 899988855555555544433333333322222233333333444444444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.6e-05 Score=82.10 Aligned_cols=157 Identities=10% Similarity=0.024 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (540)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~ 152 (540)
.++...++..+...........|.+..+|.+ ...+.+...+.++..++.+++++++||+ |+|+++..+.++..+..++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~ 309 (460)
T PRK11462 232 IVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLA 309 (460)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333344444444443 3345566777788888999999999997 9998876555444443333
Q ss_pred HHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh--hH
Q 009195 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD--RF 230 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~--~~ 230 (540)
..+. +. .+...+++..++.|++.+...+...++++|..+-++-+ ...|. ..
T Consensus 310 ~~~~-------~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~-tG~r~~g~~ 362 (460)
T PRK11462 310 MFFV-------PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWC-NGKRLTGIS 362 (460)
T ss_pred HHHh-------ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHh-cCCCchHHH
Confidence 2221 11 22333444556678877777777778888887733210 11133 33
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhccch
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~~~gw 258 (540)
++.+.+...+|..+++.+++++.+..|+
T Consensus 363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 363 FAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556677888888888888877654444
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-05 Score=76.33 Aligned_cols=142 Identities=21% Similarity=0.268 Sum_probs=105.9
Q ss_pred HHHHhhCCCh--HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccc
Q 009195 95 FMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (540)
Q Consensus 95 yl~~~lg~~~--~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 172 (540)
.....++.+. ...++..+.+.++..++.++.|.++||+ |||+.+..+.....++.+.+.+...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-------------- 91 (338)
T COG0477 27 LLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-------------- 91 (338)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--------------
Confidence 3344555554 4788889999999999999999999998 9998888887765555444444310
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC-CCchhhhhhhhHHHHHHH-HHhHHHHHHHHHHH
Q 009195 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVV 250 (540)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~-~~~~~~~~R~~~~~~~~~-~~~lg~~i~p~i~~ 250 (540)
.....+.+.|++.|++.+...+...++++|.+|. .. |+...++... ...+|..++|.+++
T Consensus 92 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T COG0477 92 ------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPLLAG 153 (338)
T ss_pred ------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467788888889999999999999999999997 34 8888888766 57788888887776
Q ss_pred Hhhhc--cchHHHHHHHHHHH
Q 009195 251 YIQME--HGWGSAFGALAIAM 269 (540)
Q Consensus 251 ~l~~~--~gw~~~f~i~~i~~ 269 (540)
.+... .+|++.|.+.....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 154 LLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHhcchHHHHHHHHHHH
Confidence 66544 56888555544433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.9e-05 Score=76.37 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhc---------
Q 009195 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------- 255 (540)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~--------- 255 (540)
.+...++++.++.|.|.+..++...+++++..++++ +.+.+++.+....+|..++|++++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 467889999999999999999999999999999888 89999999999999999999999987632
Q ss_pred -------cchHHHHHHHHHHHHHHHHH
Q 009195 256 -------HGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 256 -------~gw~~~f~i~~i~~~~~~~~ 275 (540)
..|+++|++.+++.++..++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888655554443333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-05 Score=83.90 Aligned_cols=160 Identities=14% Similarity=0.051 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.....++..++...++....+.++.|.+..+|.+.....+.......+..++.++..++++|+ |+|+++.++.++.+++
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG 315 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 344445566666666666666667778888899888888888888888888899999999997 9999999999999999
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+++.+.. . .+..++++..++.++|.+...+...++++|..+-.+-+ ...|..
T Consensus 316 ~~~~~f~~-------~-------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~-TG~R~e 368 (467)
T COG2211 316 YLLLYFTP-------A-------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK-TGVRRE 368 (467)
T ss_pred HHHHHhhc-------C-------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHH-hCCCch
Confidence 99888762 1 46778888889999999999999999999988743311 111333
Q ss_pred --HHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 009195 230 --FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (540)
Q Consensus 230 --~~~~~~~~~~lg~~i~p~i~~~l~~~~g 257 (540)
.++.+.+..=+|.+++..+.+++....|
T Consensus 369 Gi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 369 GIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344555666777777777776654433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.24 E-value=8e-05 Score=77.00 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 009195 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (540)
Q Consensus 79 ~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~ 158 (540)
++..++++.-=..+-+|--+.||++..+.......+..+..++-.+.|++..|-.|.+++..+++.+..++..+..++..
T Consensus 218 ~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~ 297 (403)
T PF03209_consen 218 FLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP 297 (403)
T ss_pred HHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444333445678888999999999999999999999999999998885558888888898888888777776643
Q ss_pred ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHH
Q 009195 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (540)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~ 238 (540)
. .+.+.+..+.+++|++.|.+.....+.+-|+..+.. -+.+++.+..+.
T Consensus 298 ~-------------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQ 346 (403)
T PF03209_consen 298 L-------------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQ 346 (403)
T ss_pred c-------------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHH
Confidence 1 356788899999999999998888888889998777 789999999998
Q ss_pred hHHHHHHHHHHHHhhhc----------cchHHHHHHHHHHHHHHHHHH
Q 009195 239 TVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNMLF 276 (540)
Q Consensus 239 ~lg~~i~p~i~~~l~~~----------~gw~~~f~i~~i~~~~~~~~~ 276 (540)
.+..+++.++++.+.|. .+|..+|.+-++..++++++.
T Consensus 347 A~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 347 AIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888776542 247777777777766665554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.4e-05 Score=82.86 Aligned_cols=175 Identities=7% Similarity=0.039 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH-------HHHHHHHH
Q 009195 78 EMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-------IAIFTTIY 146 (540)
Q Consensus 78 ~~~~~~~~~~~~~~~~~yl~~~lg~~~----~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~-------i~i~~~l~ 146 (540)
..+....+......++.|+++..+.+. -...+..+...+...+..++.|++.||+ |||+. +.++.++.
T Consensus 278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~ 356 (489)
T PRK10207 278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC 356 (489)
T ss_pred HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence 444455555555667777765333211 1223444445555667777889999998 98873 66777777
Q ss_pred HHHHHHHHHhhh-ccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 009195 147 LAGLTGITLCAT-MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (540)
Q Consensus 147 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (540)
.++.+.++.... ...... ..+.+.+....++.|+|.+...+....++.+..|++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~-------------------~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~----- 412 (489)
T PRK10207 357 SLGFLTAAAAGMWFADAQG-------------------LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL----- 412 (489)
T ss_pred HHHHHHHHHHHHhhcCCCC-------------------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH-----
Confidence 766654432210 000000 0245566677789999999999999999999999988
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHhhh----------ccchHHHHHHHHHHHHHHHHHHHH
Q 009195 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~i~p~i~~~l~~----------~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
++.+++++++..++|..++..++.+... ...+.+.|...++..++..++++.
T Consensus 413 -~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 413 -MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877765521 112455565555544444444433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.4e-05 Score=80.94 Aligned_cols=142 Identities=13% Similarity=0.062 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHhHH----HHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCc
Q 009195 107 SSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182 (540)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~----G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (540)
..+..++..+...+..++. +++.||+ +..+.+.++.++..++++.+.....+.. .+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~~l~f~~l~~~~~~~~------~~------------- 377 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLCSGAFLVLPLGAKFAN------DA------------- 377 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHHHHHHHHHHHHHHhcC------CC-------------
Confidence 3444455554445555555 5566665 6678888999999998888776532100 00
Q ss_pred cchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh--------
Q 009195 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------- 254 (540)
Q Consensus 183 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~-------- 254 (540)
..-+..++.+..++.|+|.+...|...+++.+..|++. |++.++.++++..+|+.++..+......
T Consensus 378 ~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~ 451 (500)
T PRK09584 378 GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPL 451 (500)
T ss_pred CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccch
Confidence 01245577888899999999999999999999999998 9999999988888887777666643321
Q ss_pred --ccchHHHHHHHHHHHHHHHH
Q 009195 255 --EHGWGSAFGALAIAMGISNM 274 (540)
Q Consensus 255 --~~gw~~~f~i~~i~~~~~~~ 274 (540)
..++.+.|...++..++..+
T Consensus 452 ~~~~~~~~~f~~~~~~~~~~a~ 473 (500)
T PRK09584 452 MSLEVYGRVFLQIGIATAVIAV 473 (500)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 11356667665555443333
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.6e-05 Score=75.97 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
......+..|+..-.--.+.++++.|+.+..|.+..+++..++.+..+.++|+.++.++-.|+ -..|.+.+..++.++-
T Consensus 237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill 315 (422)
T COG0738 237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL 315 (422)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 344455555665555556778899999988999999999999999999999999999998887 8888877777655544
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+...+. ++.. -+.+.++.|+..+.+.|.+.+...+..|.+.+ +++
T Consensus 316 ~~~~~l~----------------------------~g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s 361 (422)
T COG0738 316 LLAVALI----------------------------GGVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGS 361 (422)
T ss_pred HHHHHHh----------------------------cChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----ccc
Confidence 4444443 2222 33456789999999999999999999995552 333
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~ 263 (540)
+. -....+|+++.|.+.|++.|..|-...+.
T Consensus 362 ~~---l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 362 GL---LVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred ee---eeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 22 12345899999999999999998776655
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00025 Score=75.28 Aligned_cols=167 Identities=12% Similarity=0.045 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.++...+..++....++......|.++++.+|.+..+.++......++..++..+.+.+.++. ++++.+.....+..++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 455555555666666777777788899999999999999887777777777777777765444 3444443333444444
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+++..... ..+ .+....+++.++.++|.+...++.....- .+.+.+ +++
T Consensus 298 ~~l~~~~~~---~~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~ 347 (413)
T PRK15403 298 LALLIVGNL---LWP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGT 347 (413)
T ss_pred HHHHHHHHH---Hcc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcH
Confidence 444433210 001 22333456777888888888777774332 222211 566
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~ 268 (540)
..++++.....+..+++.+.+++..+ +-.++|.+..++
T Consensus 348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 385 (413)
T PRK15403 348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV 385 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence 66777777777777888888888665 445555544443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00031 Score=75.58 Aligned_cols=208 Identities=14% Similarity=-0.032 Sum_probs=139.2
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCh------HH----HHHHHHHHHHHHHHHHhHHHHHhh
Q 009195 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSF------AD----SSNAVNNFLGISQASSVLGGFLAD 130 (540)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~lg~~~------~~----~~~~~~~~~~~~~~~~~~~G~lsD 130 (540)
...++.++.++.++..+++.-++++.+..+.+.|+.+ .++-++ .+ ..+....+.+...+.+++--++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999999875 454322 11 224444455555566666778888
Q ss_pred hccc-hHHHHHHHHHHHHHHHHHHHHhhhccc-cCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhh
Q 009195 131 AYLG-RYWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCV 208 (540)
Q Consensus 131 ~~~G-R~~~i~i~~~l~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~ 208 (540)
++ | ||++..++.++..++++...+...... ..+. +.+++. - .|........++...+.|+..+.....-
T Consensus 331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~-----~~~~~~--~-~~~~~~~~~~l~~~~~~Gi~~A~~~siP 401 (477)
T TIGR01301 331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY-----DGDGES--L-PPPTGIKASALIVFAILGIPLAITYSIP 401 (477)
T ss_pred Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc-----cccccc--c-CcchhhHHHHHHHHHHhhHHHHHHHHHh
Confidence 87 8 577778998888888777765422000 0000 000000 0 0001123555666678999999999999
Q ss_pred hhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHhccc
Q 009195 209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL 282 (540)
Q Consensus 209 ~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g--w~~~f~i~~i~~~~~~~~~~~~~~~ 282 (540)
.+++++..+++..+ .|..+++++..+.+...+..+..+.+.+..| -.+.+.+.++.++++.++.+...|+
T Consensus 402 fal~s~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 402 FALASIRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHHHHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999854411 6899999999999998888887777655444 4557777777777777766665443
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=82.06 Aligned_cols=173 Identities=14% Similarity=0.008 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccc--hHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYLAG 149 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~G--R~~~i~i~~~l~~i~ 149 (540)
+...+.-...+.+.-..-+.++.++.+.+..+..+.+++..-..+.+.++..+.|.++||+ + |......+.+.....
T Consensus 273 ~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~ 351 (464)
T KOG3764|consen 273 LLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVS 351 (464)
T ss_pred hhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHH
Confidence 3333333333344433455677888888886666888888888889999999999999998 9 644444554444433
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
..+..++ +++..+++-++..+++.+...+.....+..+.+.+...+-..-|+
T Consensus 352 ~~~iP~~----------------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGs 403 (464)
T KOG3764|consen 352 SGPIPFA----------------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGS 403 (464)
T ss_pred hchhHhh----------------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeee
Confidence 3333333 456777777778888888777777777777776555321113577
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~ 273 (540)
..++...+..+|..+||.+++.+.+..|++|.-.+.++..++-.
T Consensus 404 VyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iya 447 (464)
T KOG3764|consen 404 VYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYA 447 (464)
T ss_pred HHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999987766655544433
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.6e-08 Score=103.95 Aligned_cols=189 Identities=14% Similarity=0.072 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
.....+....+..+..+....+...++.+..+.+.. ........+...++.+++.++.||+ |||++++++.++..+.
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 344444444444444433334444556666777665 2222233344556667778999997 9999999998877776
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhc-ccchhhhhhhhccCCCCCchhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
.+.+..... ..++ +. ...+...+ +...+..++.+ +..+....+.+|.||++. |.
T Consensus 330 ~~~~~~~~~---~~~~--------------~~-~~~~~~~i-~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~ 384 (451)
T PF00083_consen 330 SLILGIIFF---LGVS--------------SS-SWWSILSI-VFLALFFAFFSLGWGPLPWIYTAELFPTKV------RS 384 (451)
T ss_pred ccccccccc---cccc--------------cc-cccccccc-eeeeeccccccccccccccccccccccccc------cc
Confidence 665541000 0010 00 00011111 11112222222 344556688899999999 99
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccccccc
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~ 286 (540)
++.++.+....+++.+++.+..++.+..+-...+.+.+++.++..+..++..|+.+.+
T Consensus 385 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~ 442 (451)
T PF00083_consen 385 TGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGK 442 (451)
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCC
Confidence 9999988888899988888888877766633445555555555555555545554443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00023 Score=77.77 Aligned_cols=198 Identities=13% Similarity=0.048 Sum_probs=103.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+..++.....++..++..++-+....+....+.+..|.+... .+...+..+...++..++.++.||+ |||+.++.+.+
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence 345555555555555554444333333344445566765433 4444445555566667779999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
...++.++++........... + ........+....+.......+..+....+.+|.+|.+.
T Consensus 368 ~m~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~---- 428 (513)
T KOG0254|consen 368 GMSICLVILAVVGVFALYYPN---S------------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL---- 428 (513)
T ss_pred HHHHHHHHHHHHHHHhccCCC---c------------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH----
Confidence 999998888876331111000 0 000111122222222333333334555578899999998
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH-HHHHhcccccc
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM-LFFIGTPLYRH 285 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~-~~~~~~~~~~~ 285 (540)
|+.+.++-.....+...+-......+.+..++...|.+......+..+ ..++..++.+.
T Consensus 429 --r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg 488 (513)
T KOG0254|consen 429 --RSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKG 488 (513)
T ss_pred --HhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCC
Confidence 888887743333222222212222222222234445544444444444 34444444443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.8e-05 Score=79.92 Aligned_cols=160 Identities=9% Similarity=-0.063 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 009195 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (540)
Q Consensus 87 ~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~ 166 (540)
.+.+++=-++ ++++-.+..-+.....-..+-++.-++.++|-.|+ |+-+++.++++...+=++.+...
T Consensus 389 lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L---------- 456 (618)
T KOG3762|consen 389 LVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYL---------- 456 (618)
T ss_pred HHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHh----------
Confidence 3444443334 45555555555555555666777778889999998 99999999998888866666554
Q ss_pred CcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHH-HhHHHHHH
Q 009195 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS-VTVGAIVA 245 (540)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~-~~lg~~i~ 245 (540)
.|.++.+..-++.|+..+.++.++.+|+++..|++- |.++-++.... -.+|-.+|
T Consensus 457 ------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~G 512 (618)
T KOG3762|consen 457 ------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLG 512 (618)
T ss_pred ------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchh
Confidence 578888999999999999999999999999999998 88888885443 46888889
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 009195 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (540)
Q Consensus 246 p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~ 282 (540)
.+|+|.+.+.+|=+..|.+..+..++.++++....+.
T Consensus 513 slIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 513 SLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred hhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999998888888887777776666554433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.7e-05 Score=82.98 Aligned_cols=136 Identities=10% Similarity=-0.156 Sum_probs=105.5
Q ss_pred HHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccccccc
Q 009195 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (540)
Q Consensus 97 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (540)
++.+|+++.+.+.+.....++..++..+.+++.+|+ +.|+++.++.++..++.+...+....+.....
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g----------- 347 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG----------- 347 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccC-----------
Confidence 457899999999999999999999999999999987 99999999998888877554322110000000
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhcc
Q 009195 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (540)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~ 256 (540)
. .+...+....++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.+..
T Consensus 348 ----i---~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 348 ----I---SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred ----C---CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 011233344567788888778888999999999998 999999999999999999999999998877
Q ss_pred c
Q 009195 257 G 257 (540)
Q Consensus 257 g 257 (540)
|
T Consensus 415 g 415 (468)
T TIGR00788 415 G 415 (468)
T ss_pred C
Confidence 7
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0001 Score=79.54 Aligned_cols=163 Identities=13% Similarity=0.127 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY 146 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~i~i~~~l~ 146 (540)
.+|...+..++.....|++..+++.|+++..|++..++......+.++..++.+++|+++||. ..+|..+.....++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 678888889999999999999999999986779999999999999999999999999999993 26776666665554
Q ss_pred HH-HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhh
Q 009195 147 LA-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (540)
Q Consensus 147 ~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~ 225 (540)
.+ |.+.+.... +......+.+....+.+...++...-..+......
T Consensus 354 ~~~g~~~l~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~----- 400 (495)
T KOG2533|consen 354 AIIGAISLLAAA----------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT----- 400 (495)
T ss_pred HHHHHHHHHhhc----------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence 44 434333321 11122222222233333334444444555554433
Q ss_pred hhhhHHHHHHHHHhHHHHHH-HHHHHHhhhccchHHHHHHH
Q 009195 226 HLDRFFNFFYLSVTVGAIVA-FTLVVYIQMEHGWGSAFGAL 265 (540)
Q Consensus 226 ~R~~~~~~~~~~~~lg~~i~-p~i~~~l~~~~gw~~~f~i~ 265 (540)
+|.+..+.+..+.+.+++++ ++..+.....++|.+.|++.
T Consensus 401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 14444444444444444433 33334444556788888443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0046 Score=65.74 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHH
Q 009195 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (540)
Q Consensus 111 ~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (540)
..+.-....+..++++.+-|++ |.|+.+.++...+.+..+.... .|...+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-----------------------------~N~y~~ 105 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-----------------------------PNSYYL 105 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-----------------------------cchHHH
Confidence 4445555667778889999987 9999999999988887766655 356778
Q ss_pred HHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 009195 191 YTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (540)
Q Consensus 191 ~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~ 220 (540)
+.+-.+.|+|.+..+.-...+++|..+++.
T Consensus 106 yfssallG~Gaallw~GqG~ylt~~st~~t 135 (461)
T KOG3098|consen 106 YFSSALLGFGAALLWTGQGGYLTSNSTRET 135 (461)
T ss_pred HHHHHHhhhhHHheecccceehhhcCChhh
Confidence 888899999999999999999999988776
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00021 Score=56.74 Aligned_cols=65 Identities=18% Similarity=-0.002 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 78 ~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
.++...+.-.+.++++.|+. +.|++..+.+.+.++..+...++++++|+++||+ ||++.++....
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~ 73 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHH
Confidence 34444455557788888887 5999999999999999999999999999999998 88877766554
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.2e-05 Score=77.46 Aligned_cols=178 Identities=16% Similarity=0.075 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH----HHHHH-----HHHHHHHHhHHHHHhhhccchHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN----AVNNF-----LGISQASSVLGGFLADAYLGRYWTI 139 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~----~~~~~-----~~~~~~~~~~~G~lsD~~~GR~~~i 139 (540)
+..+...+..|+.-.++|+...+... +.+.+|+.+.+... -+... ..+...|..+..++.|++ |||++.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~-I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSV-IFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHH-HHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 55566666677777777776555433 33455554433322 11111 112222445666789998 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHH-HHHHHhhcccchhhhhhhhccCCC
Q 009195 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDE 218 (540)
Q Consensus 140 ~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~d~~~~ 218 (540)
+.+.+++++..+.++..-. .. .+...+++.- +..-++.-++......+-+|.||+
T Consensus 382 ~~GF~~~~i~~~~~~~~y~--~~----------------------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYN--QL----------------------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCcc--cc----------------------cccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence 9999999888776665310 00 1111122221 122234445556666777999999
Q ss_pred CCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh-----ccchHHHHHHHHHHHHHHHHHHHH
Q 009195 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 219 ~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~-----~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
+. |+++-++.....-+|++++...-.++.+ ..|.++.|++.++++.+..+..++
T Consensus 438 rv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 438 RV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred HH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 99 9999999888889999999999999988 778999999998888887776554
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0028 Score=57.61 Aligned_cols=108 Identities=15% Similarity=0.223 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhH
Q 009195 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (540)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (540)
..-.++.-....+..++...+.+++ |.|++++++.+.+.+-...... .+.
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-----------------------------~~~ 89 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-----------------------------PNS 89 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-----------------------------hhH
Confidence 3444444455566667778888987 9999999999888765544432 345
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHH
Q 009195 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (540)
Q Consensus 188 ~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~ 251 (540)
..++.+-.+.|++.+..+.....++.+..+++. |++..+++-...+.+..+|.++.-.
T Consensus 90 ~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 90 YTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999999999999999887776 7777777555555555555554433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0022 Score=71.84 Aligned_cols=82 Identities=9% Similarity=0.076 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccc--hHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~-~~~~~~~~~G~lsD~~~G--R~~~i~i~~~l~ 146 (540)
.++...+..++....++++.++++.|+++.+|++..+++++.....+ +..++.+++|+++||+ + .|+++.++.++.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~ 409 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS 409 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence 56777888888899999999999999999999999999988887665 6789999999999997 7 456777777666
Q ss_pred HHHHHH
Q 009195 147 LAGLTG 152 (540)
Q Consensus 147 ~i~~~~ 152 (540)
+++.++
T Consensus 410 ~~~~~~ 415 (633)
T TIGR00805 410 TLSYLL 415 (633)
T ss_pred HHHHHH
Confidence 666544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.19 Score=52.89 Aligned_cols=158 Identities=8% Similarity=-0.019 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHh-hCCChHHHH-HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 009195 88 LSVNMVTFMFYV-MHKSFADSS-NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPN 165 (540)
Q Consensus 88 ~~~~~~~yl~~~-lg~~~~~~~-~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~ 165 (540)
.-+++..|+.+. .|++..+.. -+.=++.-......++...+.|.+ |.|++++++.+..++...++.+.
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~--------- 91 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFG--------- 91 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH---------
Confidence 346788999987 899988775 444444444555666778999976 99999999988888877776654
Q ss_pred CCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHH
Q 009195 166 QDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (540)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~ 245 (540)
.+...+-+..++.|++.+. ..+..+++=-..|++. =.+..++...+.-+|-.++
T Consensus 92 -------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s 145 (412)
T PF01770_consen 92 -------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFIS 145 (412)
T ss_pred -------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4577777888888888766 4455555555555544 2333334444444554555
Q ss_pred HHHHHHhhh--ccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 246 FTLVVYIQM--EHGWGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 246 p~i~~~l~~--~~gw~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
.+++-.+.. ..++....++......+++++.++.++
T Consensus 146 ~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 146 SLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 554444433 345777777877777777777666543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0036 Score=68.85 Aligned_cols=154 Identities=12% Similarity=0.031 Sum_probs=104.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH-HH
Q 009195 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI-AI 141 (540)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i-~i 141 (540)
++.|.+...++..++..+.+|++..+.|.+....++-+.. ..++.......+..++..+.|.+.-++ ||-|-. ++
T Consensus 307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~ 385 (599)
T PF06609_consen 307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF 385 (599)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence 3456777777888888888998888878877777766543 456777777788888888889999876 775554 46
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 009195 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (540)
Q Consensus 142 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~ 221 (540)
+.++.+++.-.++... + .|....+...++.|+|.|...........-..|++.
T Consensus 386 ~~~~~ta~~Gama~~~------~--------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~- 438 (599)
T PF06609_consen 386 GSVLMTAFCGAMAAVR------P--------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED- 438 (599)
T ss_pred HHHHHHHHHHHHHHcc------C--------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH-
Confidence 6555555444444321 1 122334455678888888876666555555556655
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHHHHHHh
Q 009195 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (540)
Q Consensus 222 ~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l 252 (540)
.+...++......+|+.+|..+-..+
T Consensus 439 -----ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 439 -----IGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred -----HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888887777788887776654433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.002 Score=70.99 Aligned_cols=177 Identities=12% Similarity=0.036 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCChHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHH--------
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSFAD--SSNAVNNFLGISQASSVLGGFLADAYLGRYW-------- 137 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l-g~~~~~--~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~-------- 137 (540)
..+|.++...++..-+-..+..| .-++-+.+ |.+.++ ..+.+++..++.++|.+..|+++... -||+
T Consensus 353 ~d~Wll~~~~~cg~g~gl~~~~N-~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~prt 430 (591)
T PTZ00207 353 ARLWCLLWSIFCCVGAHFVIIFN-ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRVPIT 430 (591)
T ss_pred hhHHHHHHHHHHhhCchheeeec-HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-Hhhccccccchh
Confidence 36788888777766665444444 45777788 773322 33378999999999999999998432 3333
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccC
Q 009195 138 -TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 216 (540)
Q Consensus 138 -~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~ 216 (540)
.+.+..+ ..++.+++++.. | ...++++-++.|++.|...+......+|+|
T Consensus 431 ~~l~~~~~-~~~~~lll~~~~------p----------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selF 481 (591)
T PTZ00207 431 IALFIPSV-CIITMLTLFLTL------P----------------------KAALPLPYFIAAFANGFMAATIALVTRTIF 481 (591)
T ss_pred HHHHHHHH-HHHHHHHHHHHC------C----------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 2223333 555555555531 1 146888999999999999999999999999
Q ss_pred CCCCchhhhhhhhHHHHHHHHHhHHHHHH-HHHHHHhhhc----------cc---hHHHHHHHHHHHHHHHHHHHHhccc
Q 009195 217 DERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME----------HG---WGSAFGALAIAMGISNMLFFIGTPL 282 (540)
Q Consensus 217 ~~~~~~~~~~R~~~~~~~~~~~~lg~~i~-p~i~~~l~~~----------~g---w~~~f~i~~i~~~~~~~~~~~~~~~ 282 (540)
. ++ -++-+++..++..+|+.+- -.+.|.+.+. .| ++..|.+.+++.+++.++.....-+
T Consensus 482 g-k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R 554 (591)
T PTZ00207 482 A-KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQ 554 (591)
T ss_pred c-cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeee
Confidence 9 77 7888888777777777664 3455666532 12 7788888877777776665554433
Q ss_pred c
Q 009195 283 Y 283 (540)
Q Consensus 283 ~ 283 (540)
+
T Consensus 555 ~ 555 (591)
T PTZ00207 555 Y 555 (591)
T ss_pred h
Confidence 3
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.015 Score=62.90 Aligned_cols=160 Identities=10% Similarity=-0.088 Sum_probs=102.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH-H--
Q 009195 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY-W-- 137 (540)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~-~-- 137 (540)
++-.....+++...+....+.-..+.+..|..+. +|++ -..++..++..+...+..|+.+++=.|. +|| +
T Consensus 265 ~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~ 342 (493)
T PRK15462 265 KELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTV 342 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCC
Confidence 3334555555555555566655666666666654 2332 2245566666666666666666665544 321 1
Q ss_pred ---H-HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhh
Q 009195 138 ---T-IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA 213 (540)
Q Consensus 138 ---~-i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 213 (540)
. +.+++++..++.+.+.++..... .....+..++++..++.++|.-+..|...++++
T Consensus 343 s~~~Kfa~g~~~~g~~f~~l~~~~~~~~-------------------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~ 403 (493)
T PRK15462 343 RIWGKFALGLGLMSAGFCILTLSARWSA-------------------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQIT 403 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhcC-------------------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 1 56777777777777766532110 001135667778888999999999999999999
Q ss_pred ccCCCCCchhhhhhhhHHHHHHHH-HhHHHHHHHHHHHHh
Q 009195 214 DQFDERSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVYI 252 (540)
Q Consensus 214 d~~~~~~~~~~~~R~~~~~~~~~~-~~lg~~i~p~i~~~l 252 (540)
+..|++. |+..++.+.+. ..+|..++..+.++.
T Consensus 404 ~laP~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 404 RIEIPGV------TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HhChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999998764 357766666665554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.4 Score=51.01 Aligned_cols=194 Identities=9% Similarity=-0.121 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..+.+....++.+.+--..--..+.|+.+.+.-+---.+.....-.+..++..+.-|.+.||. -|.+++..+.+..-+.
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~s 81 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLS 81 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHH
Confidence 344555556666665554444567777776554443344444444455566667778889997 9999988887665544
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCc--cchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPA--KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
.+..+.........+. ... .......+.+..++..+.--+..++..+.=-|+...-..+....+
T Consensus 82 v~~s~~~~~~l~~~~~--------------~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~L 147 (432)
T PF06963_consen 82 VAASCALFLLLLSYPS--------------SSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGAL 147 (432)
T ss_pred HHHHHHHHHHHHhCCc--------------cccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhH
Confidence 4433322111000110 000 001111122222222222212222222222344321111111124
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
.+.-+...=.=.+--+++|++.|.+....+...+..+.++..++.+.+=++
T Consensus 148 a~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~ 198 (432)
T PF06963_consen 148 ARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYF 198 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 343333333334567789999999988888887777766666666554443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.038 Score=60.39 Aligned_cols=167 Identities=11% Similarity=0.078 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH-HHHHHHH-HHHHHHHHhh
Q 009195 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYL-AGLTGITLCA 157 (540)
Q Consensus 80 ~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~-i~~~l~~-i~~~~~~~~~ 157 (540)
+..++..+.-....-.+...+|-+....+.+++++.++..+|..++++++++. -|+...+ +...+.. +...++....
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~~ 103 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAAF 103 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333445556677889988999999999999999999888887543 2332211 1111111 1111111110
Q ss_pred hccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHH
Q 009195 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (540)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~ 237 (540)
. . .. .....++...++.++..|+..|....+..+... +. -++..+-.|..
T Consensus 104 ~-~---~~-------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ 153 (521)
T PRK03612 104 A-F---QG-------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAA 153 (521)
T ss_pred H-H---HH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhH
Confidence 0 0 00 111222334456777777777776666544322 11 23445556667
Q ss_pred HhHHHHHHHHHHHHhhh-ccc-hHHHHHHHHHHHHHHHHHHH
Q 009195 238 VTVGAIVAFTLVVYIQM-EHG-WGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 238 ~~lg~~i~p~i~~~l~~-~~g-w~~~f~i~~i~~~~~~~~~~ 277 (540)
..+|+++|.++.+++.- ..| .+..+.+..+..++++++++
T Consensus 154 ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~ 195 (521)
T PRK03612 154 DYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLW 195 (521)
T ss_pred HhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 78889989888887654 566 44444444444444444433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.55 Score=50.60 Aligned_cols=163 Identities=11% Similarity=0.057 Sum_probs=99.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHH-HhHHHHHhhhccchHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-----FADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIA 140 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~-----~~~~~~~~~~~~~~~~~~-~~~~G~lsD~~~GR~~~i~ 140 (540)
.++.++...+.-|+-.+.++.+.+ +.+.+..+ .....++-+...+.+.+. .++-+++++|+ +|++.+.
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~ 78 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY 78 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence 345666666666776666654433 56666553 245556666555544444 78889999997 9999998
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCC-----Cccc----------hhHHHHHHHHHHHHHhhcccc
Q 009195 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE-----PAKS----------WQMLYLYTVLYITGFGAAGIR 205 (540)
Q Consensus 141 i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----------~~~~~~~~~~~l~g~g~g~~~ 205 (540)
+....+.+...+.++... |..+ .-|+...|. .|.+ +....+++ ...+-.....
T Consensus 79 ~~~~~F~~~f~lF~~vl~-----p~~~----~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv---~~elw~~~vv 146 (472)
T TIGR00769 79 TVISPFLGFFALFAFVIY-----PLSD----LLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV---MAELWGSVVL 146 (472)
T ss_pred HHHHHHHHHHHHHHHHHh-----cchh----hcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH---HHHHHHHHHH
Confidence 887777776666665522 1100 000000000 0000 00111111 1222223333
Q ss_pred h-hhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhh
Q 009195 206 P-CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (540)
Q Consensus 206 ~-~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~ 253 (540)
+ ...+++.|.+..++ -.|.++++..+.|+|..+++.+..++.
T Consensus 147 S~lFW~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 147 SLLFWGFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 56788999999888 789999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00076 Score=70.38 Aligned_cols=166 Identities=11% Similarity=0.086 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHHHHH-HH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIF-TT 144 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~i~i~-~~ 144 (540)
+.++.+..+.+...+++-.=.++.++|++ .+|.+..-.+.+-.+..+...+.+++.|..|||. +||||.++.. .+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 56666666666666666555567777775 7899988888888888888899999999999985 5887776655 44
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
...++.++...+......+-. ..-...+......++++..+.=+..-......=++++|+....+
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd-----------~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~---- 175 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGD-----------NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA---- 175 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcC-----------CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh----
Confidence 455566665554321111100 00001223455566667777777776777888899999997666
Q ss_pred hhhhh-HHHHHHHHHhHHHHHHHHHHHHh
Q 009195 225 THLDR-FFNFFYLSVTVGAIVAFTLVVYI 252 (540)
Q Consensus 225 ~~R~~-~~~~~~~~~~lg~~i~p~i~~~l 252 (540)
+-+ +.+++.+...+|..+|...++|.
T Consensus 176 --~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 176 --KKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred --hhhccchhHHHHHHhcceeeeeccccc
Confidence 333 88888888899998887777644
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.033 Score=60.86 Aligned_cols=145 Identities=10% Similarity=0.081 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
....+.+..+...+.+|+. .+....+|.+.......... .........+.+-|+. |||.....+.++..++
T Consensus 323 ~~~~~~~~~~~~~~~y~gl-----~~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~ 393 (521)
T KOG0255|consen 323 RTLYLLFIWFVFSLVYYGL-----SLNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIG 393 (521)
T ss_pred HHHHHHHHHHHHhHHHHhh-----hhhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 4444444444444444443 33334456554433333332 3344445557899997 9999999999999988
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
.+..+.... . .......+...+..++.+........+.+|++|+.. |..
T Consensus 394 ~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~ 442 (521)
T KOG0255|consen 394 LLLFGWLPD-----D--------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNT 442 (521)
T ss_pred HHHHHHhhc-----c--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHH
Confidence 888876521 0 110122222233334444445555888999999998 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhh
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQM 254 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~ 254 (540)
+.+.......+|++++|.+......
T Consensus 443 ~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 443 AVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988765544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0036 Score=65.44 Aligned_cols=186 Identities=13% Similarity=0.043 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
...++.+...+....||++.+.+-.-+ ..-|++...+|.+.....++++++.++.|.++||.-.-|.++++......++
T Consensus 267 ~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 267 QFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 344444444455555555554432222 3557777889999999999999999999999999844556666666665555
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~ 229 (540)
...+..... .+ .....++..-.+.|++..+..|...-+..|..-+..+ ++
T Consensus 346 ~~~l~~~t~----~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------~t 395 (480)
T KOG2563|consen 346 TLMLLTCTL----FL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------GT 395 (480)
T ss_pred HHHHHHhhc----cC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC------cc
Confidence 322221111 01 1233455555678888888888888888887644442 33
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhccc----hHHHHHHHHHHHHHHHHHHHHhccccccc
Q 009195 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG----WGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (540)
Q Consensus 230 ~~~~~~~~~~lg~~i~p~i~~~l~~~~g----w~~~f~i~~i~~~~~~~~~~~~~~~~~~~ 286 (540)
..++.+...++.+.+-.++.+...+..+ |...-+.......+.+++..+.++.++..
T Consensus 396 SsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 396 SSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred cceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 3445445555656666666676666555 33333333344444445555555555433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=60.38 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccch-HHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIY 146 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl-~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR-~~~i~i~~~l~ 146 (540)
...+.++....+...-.|....+...++ .+.+|+++.+.+-+.+.-.+++.+.++.-.+..|+..|- +-....+..+.
T Consensus 260 i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~ 339 (451)
T KOG2615|consen 260 ISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLI 339 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHH
Confidence 3566666666555555556666666666 467999999999888888888888787778888887443 33444444444
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.-..+++..+ .....++.+..+..+..+...++...++....|+..
T Consensus 340 vP~~llls~~----------------------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------ 385 (451)
T KOG2615|consen 340 VPAFLLLSLA----------------------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------ 385 (451)
T ss_pred HHHHHHHhcc----------------------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------
Confidence 4444444443 234667788888888888888999999999999988
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~ 254 (540)
||+..+++.....++-++||.++|.+..
T Consensus 386 rG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 386 RGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 9999999999999999999999987754
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.061 Score=57.64 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (540)
Q Consensus 87 ~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~ 156 (540)
.+.+.+++|.. ++|+++.+.+.+...-.+..+++.|++|++|||+--||+.++.+.+...++.+++.+.
T Consensus 29 ~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 29 SLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred ccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 46677777775 7999999999999999999999999999999998445556666666666566555543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.023 Score=45.76 Aligned_cols=66 Identities=8% Similarity=-0.072 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (540)
Q Consensus 90 ~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~ 156 (540)
+.+.+.++++.++|.++++++.+...+|+.+|.+...++.++. .+++.+..+.++..+..+.+++.
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999999999999999999999986 78888999998888888888775
|
Note that many members are hypothetical proteins. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0025 Score=62.04 Aligned_cols=176 Identities=15% Similarity=0.047 Sum_probs=97.4
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccccc
Q 009195 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (540)
Q Consensus 93 ~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 172 (540)
..|+-+.+|+...+.+..........++...+.|-|+|+. |||+......+ .++++.+.-+ .
T Consensus 60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtyci----tYiLsCiTKh----S--------- 121 (454)
T KOG4332|consen 60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCI----TYILSCITKH----S--------- 121 (454)
T ss_pred eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehH----HHHHHHHhhc----C---------
Confidence 4566678888888888777777777777778889999997 99998665544 4444433211 0
Q ss_pred ccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhh-hhhccCCCCCchhhhhhhhHHHH-HHHHHhHHHHHHHHHHH
Q 009195 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVV 250 (540)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~d~~~~~~~~~~~~R~~~~~~-~~~~~~lg~~i~p~i~~ 250 (540)
.+.-.++++|++-|+..+...+...+ +++|.-.++. -+.+....-++= ..+...+-+.++.+.+.
T Consensus 122 ------------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~-FeqqWls~TFskA~ffgNglvAiiaGlfgn 188 (454)
T KOG4332|consen 122 ------------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRG-FEQQWLSVTFSKAVFFGNGLVAIIAGLFGN 188 (454)
T ss_pred ------------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccC-ChHhhhhHHHHHHHHhhccHHHHHHHHHHH
Confidence 23446789999999999887766654 4456543322 111111111111 11222333444445555
Q ss_pred Hhhhccc--hHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHH
Q 009195 251 YIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299 (540)
Q Consensus 251 ~l~~~~g--w~~~f~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 299 (540)
.+.+.++ --.+|-..+....++..+.+-.+.+.-..+.+...+.+-++.
T Consensus 189 ~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kdlltqf~g 239 (454)
T KOG4332|consen 189 LLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKDLLTQFKG 239 (454)
T ss_pred HHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHHHHHHhhH
Confidence 5555543 445565555444444444333333333333333444444443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0012 Score=72.31 Aligned_cols=180 Identities=9% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhc-cchHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAY-LGRYWTIAIFTTIYL 147 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~-~~~~~~~~~G~lsD~~-~GR~~~i~i~~~l~~ 147 (540)
......+....+.+...++.+++|.|+..+++.+.++++++.....+ +..+|.+++|++..|+ ++.|+.+.+..+..+
T Consensus 306 ~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~ 385 (539)
T PF03137_consen 306 VFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSI 385 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHH
Confidence 45666777777888888899999999999999999999988876554 7789999999999987 345555555554444
Q ss_pred HHHHH---HHHhh----hccccCCCC-------------Cccccccc------ccCCCCCccchhHHHHHHHHHHHHHhh
Q 009195 148 AGLTG---ITLCA----TMKVFMPNQ-------------DNCDRISQ------LLGSCEPAKSWQMLYLYTVLYITGFGA 201 (540)
Q Consensus 148 i~~~~---~~~~~----~~~~~~~~~-------------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~g~g~ 201 (540)
+..+. ..+.. ....+...+ ..|+.... ....|+.+-......+++..++..+..
T Consensus 386 v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~ 465 (539)
T PF03137_consen 386 VSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFT 465 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHH
Confidence 44333 11110 000000111 01111000 012244331223444555555555555
Q ss_pred cccchhhhhhhhccCCCCCchhhhhhhhHHHH-HHHHHhHHHHHHHHHHHHhhhc
Q 009195 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQME 255 (540)
Q Consensus 202 g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~-~~~~~~lg~~i~p~i~~~l~~~ 255 (540)
+..........-+.+++++ |..+.++ +-+...+|.+=||++-|++.|.
T Consensus 466 ~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 466 FMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -------------------------------------------------------
T ss_pred HhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 5544444455568888888 9999999 4555678888999999998885
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.025 Score=60.68 Aligned_cols=127 Identities=12% Similarity=0.081 Sum_probs=102.8
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHH-HHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 009195 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGG-FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (540)
Q Consensus 92 ~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G-~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 170 (540)
+..|+...++++..+.+...+.......++.++.. .+.-. +|-|+++.++.+...+.....+++
T Consensus 264 ~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~-------------- 328 (463)
T KOG2816|consen 264 LLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFA-------------- 328 (463)
T ss_pred EEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHh--------------
Confidence 35678889999999999999999888888888887 45554 598889999999999999988887
Q ss_pred ccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHH
Q 009195 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (540)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~ 250 (540)
++.++.+...++.++ .+...+..-++.+-+..+++ +++.+++......+.++++|.+-+
T Consensus 329 --------------~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 329 --------------TETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYG 387 (463)
T ss_pred --------------ccchhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHH
Confidence 445666666654444 46667888899999999988 999999999988888888888776
Q ss_pred Hhhh
Q 009195 251 YIQM 254 (540)
Q Consensus 251 ~l~~ 254 (540)
.+..
T Consensus 388 ~i~~ 391 (463)
T KOG2816|consen 388 NIFA 391 (463)
T ss_pred HHHH
Confidence 6643
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.22 Score=53.06 Aligned_cols=160 Identities=13% Similarity=0.027 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhhCCC----hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH---H----HHHHHHHHHHHHHHHHHHh
Q 009195 88 LSVNMVTFMFYVMHKS----FADSSNAVNNFLGISQASSVLGGFLADAYLGRY---W----TIAIFTTIYLAGLTGITLC 156 (540)
Q Consensus 88 ~~~~~~~yl~~~lg~~----~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~---~----~i~i~~~l~~i~~~~~~~~ 156 (540)
..+.+..|..+..+-+ .-...+..+.-.+..++..++..++--+. ||+ + -+-++.++...+.+++...
T Consensus 303 ~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~ 381 (498)
T COG3104 303 MGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLA 381 (498)
T ss_pred ccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3445555655432211 12334555555566666667777776664 433 2 2344555555555555544
Q ss_pred hhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHH
Q 009195 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (540)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~ 236 (540)
...... ++...++.+++.+.+++++|.=++.|...++++...|++- .+..++.+.+
T Consensus 382 ~~~~~~------------------~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfL 437 (498)
T COG3104 382 GIWFGG------------------PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFL 437 (498)
T ss_pred HHhhcC------------------CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHH
Confidence 211000 0112457788888899999999999999999999999877 8888888888
Q ss_pred HHhHHHHHHHHHHHH------hhhccchHHHHHHHHHHHHHH
Q 009195 237 SVTVGAIVAFTLVVY------IQMEHGWGSAFGALAIAMGIS 272 (540)
Q Consensus 237 ~~~lg~~i~p~i~~~------l~~~~gw~~~f~i~~i~~~~~ 272 (540)
....|..++..+.+. ..+.......|+......++.
T Consensus 438 t~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~ 479 (498)
T COG3104 438 TVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVI 479 (498)
T ss_pred HHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 888888777666652 122233444555555444333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.73 E-value=3.3 Score=43.58 Aligned_cols=128 Identities=9% Similarity=0.036 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHH
Q 009195 110 AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189 (540)
Q Consensus 110 ~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (540)
++.+-.+-..+.-+++-+..+|+ --+.=+.++.++.++|+++.+++ .+...
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~----------------------------~~v~~ 114 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFS----------------------------PSVWV 114 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeec----------------------------cchhH
Confidence 33334444555556667778876 42323344455667777777664 35666
Q ss_pred HHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc--hHHHHHHHHH
Q 009195 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAI 267 (540)
Q Consensus 190 ~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g--w~~~f~i~~i 267 (540)
-+++..+.+++.|.-....-++.+ .+++. ..+.+..+...++++|+..=..+.. .| .|..+.+...
T Consensus 115 ~l~Gv~las~ssg~GE~tfL~lt~-~y~~~----------~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~ 182 (402)
T PF02487_consen 115 RLLGVVLASLSSGLGEVTFLSLTH-FYGKS----------SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLV 182 (402)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHH-hcCcc----------ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHH
Confidence 677888888888877777766644 44422 2333444455556666554444444 44 4556655554
Q ss_pred HHHHHHHHHHH
Q 009195 268 AMGISNMLFFI 278 (540)
Q Consensus 268 ~~~~~~~~~~~ 278 (540)
+.++.++.+++
T Consensus 183 lp~~~~~~~f~ 193 (402)
T PF02487_consen 183 LPAIFLLSYFF 193 (402)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.54 Score=50.27 Aligned_cols=118 Identities=19% Similarity=0.087 Sum_probs=76.4
Q ss_pred HHHHHHHHhHHHHHhhhc--cchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHH
Q 009195 115 LGISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (540)
Q Consensus 115 ~~~~~~~~~~~G~lsD~~--~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (540)
..+..++.++.+.+++|. +||++++.++..++.++.++..+.... ..|- . +++.-+....++.....+
T Consensus 289 g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~--dap~----~----~t~~~~~~~~~~~~~~~i 358 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPN--DAPL----R----PTDSPPLLFTPSYYLALI 358 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccc--cCCC----C----CCcccccccccchhHHHH
Confidence 344455566677777664 499999999999999888877765321 1100 0 111222223334444555
Q ss_pred HHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHH
Q 009195 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (540)
Q Consensus 193 ~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~ 249 (540)
.-+++|++.++.......++++..| ++ |..+++++-+-..++..++.+..
T Consensus 359 i~~l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 359 IGFLLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhhh
Confidence 5678999999999999999999994 44 77888886666666555444433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.83 Score=48.66 Aligned_cols=135 Identities=10% Similarity=-0.060 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCc
Q 009195 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (540)
Q Consensus 89 ~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~ 168 (540)
-..+..|+... |++....+..-+...+....+..+..++.+|+ |--|+=+++.....+...++..+... +.
T Consensus 278 ~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~----~~--- 348 (432)
T PF06963_consen 278 GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWA----PG--- 348 (432)
T ss_pred cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhc----CC---
Confidence 34567888866 99999999999999999999999999999998 98888888877766655555443221 11
Q ss_pred ccccccccCCCCCc-cchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHH
Q 009195 169 CDRISQLLGSCEPA-KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (540)
Q Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~ 247 (540)
+| ...+...++.+..+-=+|.=++--+..-++-|..|+++ |+...+.-+...++.-.+...
T Consensus 349 ------------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 349 ------------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred ------------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHH
Confidence 00 11345566666667777877888888999999999888 999999987777877776655
Q ss_pred HHH
Q 009195 248 LVV 250 (540)
Q Consensus 248 i~~ 250 (540)
++-
T Consensus 411 ~~i 413 (432)
T PF06963_consen 411 LTI 413 (432)
T ss_pred HHh
Confidence 443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.094 Score=55.31 Aligned_cols=137 Identities=8% Similarity=-0.016 Sum_probs=75.6
Q ss_pred HHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhc---cchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccc
Q 009195 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (540)
Q Consensus 97 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (540)
.+-.|.+..+..+...+...+..+|.++||.++||+ +-|-.+.....+....+..+........ +. .+
T Consensus 275 ~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~---~~--~~---- 345 (493)
T KOG1330|consen 275 YELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF---PA--FT---- 345 (493)
T ss_pred HHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH---Hh--hh----
Confidence 334456666667788888899999999999999994 1111222222222222211111110000 00 00
Q ss_pred cccCCCCCccchhHHHHHHHHHHHHHhhcc-cchhhhhhhhccCCCCCchhhhhhhhHHHHHHHH-HhHHHHHHHHHHHH
Q 009195 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS-VTVGAIVAFTLVVY 251 (540)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~-~~lg~~i~p~i~~~ 251 (540)
.....+....++.|+.... -.+.....+.|..|++. |.+++++.+.. ..+|-.-+|.+.|.
T Consensus 346 -----------~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~------Rt~a~a~~~~~~h~fgd~~~p~ivGi 408 (493)
T KOG1330|consen 346 -----------SSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSR------RTTAYALDTVFEHIFGDAASPYIVGI 408 (493)
T ss_pred -----------hHHHHHHHHHHHHHHHHHhcccccccceeeEecCccc------ccHHHHHHHHHHHHhccCCCcceehh
Confidence 1112222333444444332 23444567789999998 99999995554 45666666668888
Q ss_pred hhhcc-chH
Q 009195 252 IQMEH-GWG 259 (540)
Q Consensus 252 l~~~~-gw~ 259 (540)
+.++. ||+
T Consensus 409 lsd~l~g~~ 417 (493)
T KOG1330|consen 409 LSDKLRGYK 417 (493)
T ss_pred HHHHhhCCC
Confidence 87754 555
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.2 Score=42.93 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=46.7
Q ss_pred ccchhHHHHHHHHHHHhhHHHHHHHHHHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHHHHHHHhhhh
Q 009195 437 APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 514 (540)
Q Consensus 437 ~P~~~rg~~~g~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~i~~~~~~~ 514 (540)
+|++.|++++++......++..+++.+.+.+.+..+ +.+.|++.+++.++..+..+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG------------------WRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc------------------hHHHHHHHHHHHHHHHHHHhhcCC
Confidence 899999999999999999999999999988765333 345677777777766666555543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=94.10 E-value=13 Score=42.04 Aligned_cols=254 Identities=12% Similarity=-0.019 Sum_probs=150.1
Q ss_pred HHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccc
Q 009195 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175 (540)
Q Consensus 96 l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (540)
...-.+...........++....++..++....+|-.-|+...+.......++..+...+.+... .+
T Consensus 11 vlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a--~~----------- 77 (654)
T TIGR00926 11 VLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA--IP----------- 77 (654)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc--Cc-----------
Confidence 33334445556678888899999999999999999876777788888888887777776653210 00
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 009195 176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (540)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~ 255 (540)
.........++.+.+.++.++..++-+.+.+++++.-+ ...+.+..++|++..+.+.+ |.+++..+...
T Consensus 78 -------~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~ 146 (654)
T TIGR00926 78 -------SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINA-GSLISTIITPI 146 (654)
T ss_pred -------ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 01223444556677888889999999999999998755 24455789999999887765 55666666554
Q ss_pred cc-hHH------HHH-HHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCCcccccccccCCCcc
Q 009195 256 HG-WGS------AFG-ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHS 327 (540)
Q Consensus 256 ~g-w~~------~f~-i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~~~~s~~~~l~~~~~~~~ 327 (540)
.. +.. .+. ..++.+++.++.++......+..++.+.....+.++.....+..+
T Consensus 147 l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~------------------- 207 (654)
T TIGR00926 147 LRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR------------------- 207 (654)
T ss_pred HHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH-------------------
Confidence 32 221 132 444445555555555544444444433332222222211111100
Q ss_pred cccCCcccccCCCchhhHHHhhhhccccCCCCCCccc--chhhHHHHHHHHhhhhhhhhhHHHHHHhhhhhhHHHHHHhh
Q 009195 328 AIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLC--TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT 405 (540)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 405 (540)
+.....+......|.+. .....++++.+.+.+.++.....+++.+.++......+...
T Consensus 208 --------------------~~~~~~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~q 267 (654)
T TIGR00926 208 --------------------KRFSTRSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQ 267 (654)
T ss_pred --------------------HhhccCCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 00000000000112111 22223457778888888888888888877766666666666
Q ss_pred hccccCC
Q 009195 406 MNTHMGH 412 (540)
Q Consensus 406 ~~~~~~~ 412 (540)
++...++
T Consensus 268 a~~m~~~ 274 (654)
T TIGR00926 268 ATRMDGD 274 (654)
T ss_pred HHHhcCc
Confidence 6654343
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.22 Score=53.36 Aligned_cols=201 Identities=11% Similarity=0.057 Sum_probs=116.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH--HHHHHHhHHHHHhhhccch---HHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG--ISQASSVLGGFLADAYLGR---YWTI 139 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~--~~~~~~~~~G~lsD~~~GR---~~~i 139 (540)
+-.|+..+.++...+...+.+..+-+-.+......++++.+++....+.... +.....+...+..-++ |+ |..+
T Consensus 258 ~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r~~~ 336 (488)
T KOG2325|consen 258 KLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKRRII 336 (488)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccceee
Confidence 3456678888888888888887777777777778889987777544444332 2223333444444443 43 3333
Q ss_pred HHH-HHHHHHHHHHHHHhhhcc-ccCCC---CCcccccccccC-CCCCccchhHHHHHHHH-HHHHHhhcccchhhhhhh
Q 009195 140 AIF-TTIYLAGLTGITLCATMK-VFMPN---QDNCDRISQLLG-SCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFG 212 (540)
Q Consensus 140 ~i~-~~l~~i~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~ 212 (540)
..+ ...+....+.+.-..... .+.+. .-+|+- ..+ -|......+...++.+. ++.|++.-.+.....++.
T Consensus 337 ~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~---~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tly 413 (488)
T KOG2325|consen 337 LLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDF---EEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLY 413 (488)
T ss_pred eehHHHHHHhhheeeeeccccccccccccccccCcCc---ccchhhccCcccChhhheeehhheeccccccccchHHHHH
Confidence 333 332222222111110000 00000 001110 001 14444444455555553 456666666667778899
Q ss_pred hccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 009195 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (540)
Q Consensus 213 ~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~ 275 (540)
+++..+++ .+..-+++.....++..+||++...+....|.++...+.....++...+
T Consensus 414 SkiLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l 470 (488)
T KOG2325|consen 414 SKILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAAL 470 (488)
T ss_pred HHHhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHH
Confidence 99999998 7788888888889999999999999888888887766555544443333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=93.44 E-value=1.3 Score=46.48 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 009195 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (540)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~ 254 (540)
+.+.+++..+..|+..|+.+.+....+.|..++++ |..+++...++-.+|..++.+++-++..
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 46666677788999999999999999999988877 9999999888888888888777766543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.32 E-value=3.1 Score=43.15 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=84.4
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhh-----hccchHHH
Q 009195 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD-----AYLGRYWT 138 (540)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD-----~~~GR~~~ 138 (540)
.++..+.+..+.+.-+++..-. +.... .+++-+.-|.|-++.+....++ --+-.-++++++.| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP~-GL~~~-iP~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPL-GLIGA-IPLLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCch-hHhhh-hHHHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 4555667777777777776655 56554 4455556677655544322221 11223468888999 86 99998
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCC
Q 009195 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (540)
Q Consensus 139 i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~ 218 (540)
.++-. -+.+|.....++......+ +.+-+. ++...+....++.-+..+.--.++-+..-.+..+
T Consensus 101 Wvvp~-q~llG~~mllLs~~v~~~~------------g~ng~~---p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~ 164 (510)
T KOG3574|consen 101 WVVPC-QYLLGLFMLLLSYLVDRGL------------GGNGGL---PNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR 164 (510)
T ss_pred eeeeh-HHHHHHHHHHHhhCCCccc------------ccCCCC---cchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH
Confidence 76543 2334444444442211111 101111 2333333333444455454445555566666666
Q ss_pred CCchhhhhhhhHHHHHHHHHhHHHHHHHHHH
Q 009195 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (540)
Q Consensus 219 ~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~ 249 (540)
++ .+-+-.....+.+.|..++..+.
T Consensus 165 e~------lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 165 EN------LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hh------cCchhHHHHHHHhhhHHhhccee
Confidence 66 55555556667777777765543
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.47 Score=53.26 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH-HHHHHHHHhHHHHHhhhc-cchHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAY-LGRYWTIAIFTT 144 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~G~lsD~~-~GR~~~i~i~~~ 144 (540)
......+...++.+.+-+..+++|-|+.+++|.+.+.+..+.... ..+..+|.+++|++.-|+ +.-|.+..+.++
T Consensus 393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~ 469 (735)
T KOG3626|consen 393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIV 469 (735)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHH
Confidence 567778888889999999999999999999999999999887554 456778899999999887 344444444443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.93 E-value=3.4 Score=41.95 Aligned_cols=120 Identities=16% Similarity=0.037 Sum_probs=66.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Q 009195 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (540)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~ 143 (540)
++..-|.++.+...-++...++ .-..++.......+|-.. .+.+ -...+...++.+.+..+ +|-|+++.++.
T Consensus 24 ~~~~~knv~i~s~~fl~~f~a~-~gl~nlq~~vn~~lg~~s--l~~~----y~~l~~s~m~~~~~Ir~-~g~K~tm~lav 95 (390)
T KOG3097|consen 24 RLGILKNVLILSIAFLLTFTAY-LGLQNLQTSVNYDLGTVS--LGAL----YLSLIDSSMFMPLLIRF-LGTKWTMVLAV 95 (390)
T ss_pred ccchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhcCcccch--hhhh----hHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 3444455555555444444444 333444444443333211 1111 11223333444456665 49999998887
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 009195 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (540)
Q Consensus 144 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~ 220 (540)
..+.+....-.. ..+..++..-.+.|++.+.+++.-.+|++++-....
T Consensus 96 ~~Y~lyiA~Nl~-----------------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya 143 (390)
T KOG3097|consen 96 FPYALYIAANLE-----------------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYA 143 (390)
T ss_pred HHHHHHHHhhcc-----------------------------hhHHhhccHHHhhccccccccccCcceecHHHHHHH
Confidence 665543321111 245556667778999999999999999988765443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=88.19 E-value=3.9 Score=43.76 Aligned_cols=155 Identities=10% Similarity=-0.013 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCh-HHHHHHHHHHHHHHHHHHhHHHHHhhhccchH-HHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSF-ADSSNAVNNFLGISQASSVLGGFLADAYLGRY-WTIAIFTTI 145 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-lg~~~-~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~-~~i~i~~~l 145 (540)
+.+|...+..++..+....+.+......+.. .+.++ ...-....+|.++-.+|..+..+.. +-++| +.+.+..+.
T Consensus 269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~--~p~~~~~~l~i~s~~ 346 (437)
T TIGR00939 269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM--WPDEDSRWLPILSFL 346 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE--eeCCCccchHHHHHH
Confidence 4445555544444444433333322222222 12222 2445677778888888887554431 11222 133344444
Q ss_pred HHHHHHHHHHhhhccccCCCCCcccccccccCCCCCc-cchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA-KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
=++...++.++... +. .+ .| .=.+-...++..++.|+..|-.......+..+..++++
T Consensus 347 R~iFIPlf~lcn~~----~~------~~-------~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e---- 405 (437)
T TIGR00939 347 RVLFIPLFLLCNYP----QR------SR-------LPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE---- 405 (437)
T ss_pred HHHHHHHHHHhcCC----cc------cc-------CCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH----
Confidence 44444443333110 00 00 00 00133455666789999999888888888889887655
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTL 248 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i 248 (540)
|..+-.+..++.++|-.+|..+
T Consensus 406 --~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 406 --REVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHH
Confidence 6566555555666666555443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=87.23 E-value=48 Score=35.88 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=53.2
Q ss_pred HHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 195 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 271 (540)
Q Consensus 195 ~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~ 271 (540)
++.++.........-..+.+++|++.+ |...++-++...++...+..++++.+.+..||.....+.-+..++
T Consensus 274 i~y~~~~nlve~~~k~~v~~~~p~~~~-----~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 274 IAYGISINLVEVTWKSKLKAQYPSPNE-----YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345555556666667788899986553 899999988888888877777779999999999877765555444
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=86.49 E-value=2.1 Score=45.69 Aligned_cols=133 Identities=10% Similarity=-0.085 Sum_probs=76.3
Q ss_pred HhhC---CChHHHHHHHHHHHHHHHHHHhHHH-HHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccc
Q 009195 98 YVMH---KSFADSSNAVNNFLGISQASSVLGG-FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (540)
Q Consensus 98 ~~lg---~~~~~~~~~~~~~~~~~~~~~~~~G-~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (540)
..++ +++...+.+..+..++..++..+.. ++++ . .-|+++.++.++.++..+.-.+...-+..
T Consensus 245 ~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~-~-~~R~~~~~t~~~~~~~~l~~~~lv~~~n~----------- 311 (433)
T PF03092_consen 245 DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSN-W-SWRRIFVVTTLVSVLASLFDLLLVTRWNL----------- 311 (433)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHHhcccEEEEEEEee-----------
Confidence 3455 7877777666666666666665554 3455 3 56677766665554443322211000000
Q ss_pred cccCCCCCccchhHHHHHH-HHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHh
Q 009195 174 QLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (540)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l 252 (540)
.-|.|. . .+.. --++..+..+.-......+.+|+-|+.. -++.+++.....|+|..++..++..+
T Consensus 312 ----~~Gi~d---~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l 377 (433)
T PF03092_consen 312 ----DLGIPD---Q-WFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFL 377 (433)
T ss_pred ----eeCcCC---e-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 1111 1233444444445556677899999888 78888888888889888888888887
Q ss_pred hhccc
Q 009195 253 QMEHG 257 (540)
Q Consensus 253 ~~~~g 257 (540)
.+..+
T Consensus 378 ~~~~~ 382 (433)
T PF03092_consen 378 MELFG 382 (433)
T ss_pred HHHcC
Confidence 66544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=86.06 E-value=56 Score=35.54 Aligned_cols=171 Identities=12% Similarity=0.051 Sum_probs=91.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIA 140 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l---g~~~~~~~~~~~~~~~-~~~~~~~~~G~lsD~~~GR~~~i~ 140 (540)
+..++.++.+.+..|+..+.+..+. -+++.+ ..+.+....+-....+ ...+...+-.++++++ +|.+++.
T Consensus 20 ~~E~~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy 93 (491)
T PF03219_consen 20 RSELKKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFY 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 3445566666666666655553221 122222 1233333443333333 3445566779999997 9999988
Q ss_pred HHHHHHHHHHHHHHHhhhc--cccCCCCCcccccccccCCCCCccchhHHHHHH-------HHHHHH-Hhhcccch-hhh
Q 009195 141 IFTTIYLAGLTGITLCATM--KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT-------VLYITG-FGAAGIRP-CVS 209 (540)
Q Consensus 141 i~~~l~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~g-~g~g~~~~-~~~ 209 (540)
+....+.....+.++...+ -.++|+. .+. ...-..+..-. +.+.+ ..++.. +-.....+ ...
T Consensus 94 ~~~~~F~~fF~~f~~vlyP~~~~lhp~~-~~~-----~~~~~~~~~~~-~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW 166 (491)
T PF03219_consen 94 IIIIPFLGFFALFAFVLYPNRDILHPDA-FAD-----KLLAILPPGFK-GFIAMFRNWTFSLFYVMAELWGSVVLSLLFW 166 (491)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhcCCCH-HHH-----HhhhhccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777766666654221 0111110 000 00000000000 00000 111111 11112222 347
Q ss_pred hhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 009195 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (540)
Q Consensus 210 ~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~ 254 (540)
.+..|.++.++ -.+.++++..+.|+|..++..+..++.+
T Consensus 167 ~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 167 GFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999888 7889999999999999999988888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.04 E-value=39 Score=36.45 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=101.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHH-HHHHHHhHHHHHhhhccchHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIA 140 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~---~~~~~~~~~~~~~-~~~~~~~~~G~lsD~~~GR~~~i~ 140 (540)
+..++.++.+.+..++-.+.++.+. -+.+.+.++ +.....+-....+ .+.+..++-+++.+++ -|.+++.
T Consensus 23 r~E~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~ 96 (509)
T COG3202 23 RYELKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFY 96 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHH
Confidence 3456677777777777666654332 245555444 4445566666665 6777788889999987 9999988
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcccccccccC-----CCCCc-c---------chhHHHHHHHHHHHHHhhcc-c
Q 009195 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG-----SCEPA-K---------SWQMLYLYTVLYITGFGAAG-I 204 (540)
Q Consensus 141 i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~---------~~~~~~~~~~~~l~g~g~g~-~ 204 (540)
+....+....+++++... |. |+..|.+.. ....| . .+....+++ .+=-+|. .
T Consensus 97 ~~~~~F~~fF~LFa~Vi~-----P~---~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi----~aELWgslV 164 (509)
T COG3202 97 IILGFFLGFFALFAFVIY-----PY---KDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYI----MAELWGSLV 164 (509)
T ss_pred HHHHHHHHHHHHHHHHHh-----cc---ccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHH----HHHHHHHHH
Confidence 888888777777776633 21 111111100 01111 1 011222222 1111111 1
Q ss_pred c-hhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhh
Q 009195 205 R-PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (540)
Q Consensus 205 ~-~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~ 254 (540)
. -....+..|++..++ -.|++++++++.|++..++..+..++.+
T Consensus 165 ~S~lFw~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 165 LSLLFWQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 133567788888877 7899999999999999999999888866
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.45 E-value=8.7 Score=38.11 Aligned_cols=140 Identities=12% Similarity=0.094 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhccchHH---HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCcc
Q 009195 107 SSNAVNNFLGISQASSVLGGFLADAYLGRYW---TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 183 (540)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~---~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (540)
-+.+.+.++++.++|+-+...+..|- |.+ .+.+..++.++... +...++ ...|.
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s--~~~ve~ymqivf~vs~a~l~-Lpilt~--~vsP~------------------ 340 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS--SPKVESYMQIVFLVSIAALL-LPILTS--SVSPS------------------ 340 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC--CcccchHHHHHHHHHHHHHH-HHHHHh--ccCCC------------------
Confidence 37788888888887776666665542 322 23333332222222 222111 01111
Q ss_pred chhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHH
Q 009195 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (540)
Q Consensus 184 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~ 263 (540)
+.+...-+++..+.-.+.|.++|.+.-+=.+..|++. |.+.+++|....|+..-++-...---....+-|..|.
T Consensus 341 kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~ 414 (454)
T KOG4332|consen 341 KESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFG 414 (454)
T ss_pred cCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhh
Confidence 1333334556666777888999999988888889888 9999999988877654433111000001234677888
Q ss_pred HHHHHHHHHHHH
Q 009195 264 ALAIAMGISNML 275 (540)
Q Consensus 264 i~~i~~~~~~~~ 275 (540)
++.+...++.+.
T Consensus 415 icS~~~~~a~i~ 426 (454)
T KOG4332|consen 415 ICSAFLFVASIL 426 (454)
T ss_pred hhHHHHHHHHHH
Confidence 888777666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 540 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 2e-11 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 1e-04 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 286 bits (734), Expect = 2e-90
Identities = 94/553 (16%), Positives = 181/553 (32%), Gaps = 126/553 (22%)
Query: 64 KTGGWIAAL-FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLG 116
W + +I +E ER +++G+ + F+ + S A + + ++F+
Sbjct: 6 DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65
Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
+LGG++AD + G+Y TI + IY G + +
Sbjct: 66 GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------ 107
Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
+ YT L++ G+ GI+P VSSF DQFD+ K+ + F+ FY
Sbjct: 108 ---------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYF 155
Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
++ G+ A + + G AFG + M ++ + F++G Y H P
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215
Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAA------LE 350
V+ +A + + L + + G SA I L A +
Sbjct: 216 LPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273
Query: 351 LKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM 410
+ K V+ V++++R++ + A + + + + QA M
Sbjct: 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ 333
Query: 411 GHP-------------------------------RGASQLQRVGIGLAVSILSVIWA--- 436
+ L+++G G+A++ LS I
Sbjct: 334 WFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTI 393
Query: 437 ----------------------------------------APDAMKSIGSAYAALAGGLG 456
AP AMK ++ L+ +G
Sbjct: 394 QLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG 453
Query: 457 CFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 516
+ N +KS T + ++ F ++ A +++ F A Y
Sbjct: 454 NLWVLLANVSVKSPTVT-----EQIVQTGMSVTAFQMFFF--AGFAILAAIVFALYARSY 506
Query: 517 KYRSEQKHGNDYE 529
+ + + E
Sbjct: 507 QMQDHYRQATGSE 519
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 37/217 (17%)
Query: 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFL 128
+F EM ER +Y+G+ ++ +M++++ + A +++ + + + S +GGF+
Sbjct: 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
AD +G + + + G + A +
Sbjct: 78 ADRIIGARPAVFWGGVLIMLGHIVL----------------------------ALPFGAS 109
Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
L+ + + G ++P VS+ +DE + D F+ F + +GA +A +
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
V Q G+ AF AI M I ++++ G
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 87/596 (14%), Positives = 162/596 (27%), Gaps = 196/596 (32%)
Query: 57 KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
K + D+ K+ I E + + +V+ +F+ + V F+
Sbjct: 36 KDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVE 84
Query: 117 ISQASSVLG---GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR-- 171
VL FL ++ T +Y+ L +VF N R
Sbjct: 85 -----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRLQ 135
Query: 172 ----ISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGADQFDERSKD 222
+ Q L PAK ++ + G G A +
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL---------------DVCLS 173
Query: 223 YKTHLDRFFNFFYLSV----TVGAIVAFTLVVYIQMEHGWGS-AFGALAIAMGISN---- 273
YK F F+L++ + ++ + Q++ W S + + I + I +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 274 MLFFIGTPLYRHRL---------------PGGSPL---TR---VAQVLVAAFRKR----- 307
+ + + Y + L + TR V L AA
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 308 -HAAFSSSELIGLY---------EVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVIN 357
+ E+ L ++P + + R L A +++ +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNP--------RRLSIIAESIRDGLAT 343
Query: 358 PSPW------KLCTVTQV-------EEVKTL-VRL------VPIPACTIML--------- 388
W KL T+ + E + + RL IP + L
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 389 -NVILTEFLTLSV----QQAYTMNTHM------GHPRGASQLQRVGIGLAVSILSVIWAA 437
V++ + S+ + T++ L R + +I + +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKT-FDS 461
Query: 438 PDAMKSIGSAY-----------AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 486
D + Y + F L+ +L Q I
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--------------RFLEQKI 507
Query: 487 NTGRFDYLYW-----LLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYD 537
R D W +L L + F Y+ Y + YE + N + D
Sbjct: 508 ---RHDSTAWNASGSILNTLQQLKF-------YK-PYIC--DNDPKYERLVNAILD 550
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 540 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.94 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.93 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.9 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.87 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.78 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.68 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.47 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.35 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.3 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.12 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.09 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.82 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.08 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-27 Score=254.65 Aligned_cols=361 Identities=14% Similarity=0.119 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccc
Q 009195 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (540)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (540)
...+++.+.+.+|..+|++++|+++||+ |||++++++.++++++.++++++......... .. .-.....
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~--~~--------~~~~~~a 123 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP--DN--------TVPVYLA 123 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS--SS--------SCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--hh--------HHHHHHh
Confidence 4567888999999999999999999998 99999999999999999998864211000000 00 0000011
Q ss_pred hhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhc--------c
Q 009195 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------H 256 (540)
Q Consensus 185 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~--------~ 256 (540)
.+...++++|++.|+|.|+..+..+.+++|..|++. |++..++++.+..+|..+++.++..+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 578899999999999999999999999999999998 99999999999999999988887766432 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCchhHHHHHHHHHHHhhccccCCcccccccccCCCcccccCCcccc
Q 009195 257 GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIA 336 (540)
Q Consensus 257 gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~k~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~ 336 (540)
+||+.+.+..+..++.++..+ ..||+|+| +..+++.+++.+..+|..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~--------------------------------~~peSp~~-L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 198 GWRYMFASECIPALLFLMLLY--------------------------------TVPESPRW-LMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHTTHHHHHHHHHHGG--------------------------------GSCCCHHH-HHHTTCHHHHHHHHHHHH
T ss_pred hhHHHhhhhhhhhhhhhhhhh--------------------------------cCCCChHH-HHHcCchhHHHHhHHHhc
Confidence 366666555554444333322 25888888 777766665555444432
Q ss_pred cCCCchh--hHHHhhhhccccCCCCCCcccchhhHHHHHHHHhhhhhhhhhHHHH-HHhhhhhhHHHHHHhhhccc----
Q 009195 337 HTDDFRC--LDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLN-VILTEFLTLSVQQAYTMNTH---- 409 (540)
Q Consensus 337 ~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~---- 409 (540)
..+.... .+......... ..... ......+++.........+.... .....+.+.+ .+....+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 316 (491)
T 4gc0_A 245 GNTLATQAVQEIKHSLDHGR--KTGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV-FKTLGASTDIALL 316 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSSCCHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhh--hhhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHH-HHhcCCCccchhh
Confidence 2111000 00000000000 00000 00000011111111111111110 0111111110 000000000
Q ss_pred ------c--------------CCCCCCChhH---HHHHHHHHHHHH-------------HHHh-----------------
Q 009195 410 ------M--------------GHPRGASQLQ---RVGIGLAVSILS-------------VIWA----------------- 436 (540)
Q Consensus 410 ------~--------------~~~~~~~~~~---~~~~g~~~~~~~-------------~~~~----------------- 436 (540)
. |.+++..... .+.++++..... +...
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
T 4gc0_A 317 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS 396 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0 1111111100 001111100000 0000
Q ss_pred --ccchhHHHHHHHHHHHhhHHHHHHHHHHhhhccccCCCCCCCCCcccCCCcCcchhHHHHHHHHHHHHHHHHHHhhhh
Q 009195 437 --APDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 514 (540)
Q Consensus 437 --~P~~~rg~~~g~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~~~~~~~i~~~~~~~ 514 (540)
+|.+.|++++|+...++++++++++.+.+.+.+.. |... ..+..+.|++++++++++.++.+++.|
T Consensus 397 E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~---------~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 397 EIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS---------WLVA---HFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH---------HHHH---HHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHh---hhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 89999999999999999999999999988875421 1000 001235688899999999999999999
Q ss_pred cccccccccCCCchhhhhhcc
Q 009195 515 RYKYRSEQKHGNDYEVMENKL 535 (540)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~ 535 (540)
|||+|++||+++.+|..+.+.
T Consensus 465 ETkg~tLeei~~~f~~~~~~~ 485 (491)
T 4gc0_A 465 ETKGKTLEELEALWEPETKKT 485 (491)
T ss_dssp CCTTCCHHHHGGGTC------
T ss_pred CCCCCCHHHHHHHhCCCCccc
Confidence 999999999988887655443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-24 Score=230.53 Aligned_cols=185 Identities=23% Similarity=0.392 Sum_probs=162.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHHhHHHHHhhh-ccchHH
Q 009195 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYW 137 (540)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~-~~GR~~ 137 (540)
.+++++..+.+.+..++..+++|++.++++.|+++. +|++..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 345667888999999999999999999999999998 99999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCC
Q 009195 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (540)
Q Consensus 138 ~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~ 217 (540)
++.++.++..++.++++++ .+...++++|++.|++.+...+...++++|++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 138 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYD 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC
Confidence 9999999999998888765 356788899999999999999999999999999
Q ss_pred CCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Q 009195 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (540)
Q Consensus 218 ~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~ 281 (540)
+++.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..+++++++++..+
T Consensus 139 ~~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 139 EHDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp SCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 87732 6778888999999999999999999999999999999987777666666554433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-25 Score=235.83 Aligned_cols=183 Identities=26% Similarity=0.479 Sum_probs=158.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Q 009195 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (540)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg------~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i 141 (540)
++.++.+.+..++..+++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3456678888899999999999999999999999 9999999999999999999999999999995599999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccch-hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCC
Q 009195 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (540)
Q Consensus 142 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~ 220 (540)
+.++..++.++++++ . +...++++|++.|++.+...+...++++|++|+++
T Consensus 91 ~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 91 LSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 999999998888775 3 57788899999999999999999999999999888
Q ss_pred chhhhhhhh---HHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccccc
Q 009195 221 KDYKTHLDR---FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284 (540)
Q Consensus 221 ~~~~~~R~~---~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~ 284 (540)
|++ .+++++...++|..++|.+++++.+..||++.|++.++..+++.++++...++.+
T Consensus 143 ------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 203 (524)
T 2xut_A 143 ------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYI 203 (524)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCC
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 754 4555888999999999999999998899999999888877666665554444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=216.19 Aligned_cols=177 Identities=13% Similarity=0.060 Sum_probs=150.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH
Q 009195 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (540)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l 145 (540)
.+|+.++.+.+..++..+..+.+...++ ++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence 3456667777777777777655555554 455567 9999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHH----hhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCc
Q 009195 146 YLAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (540)
Q Consensus 146 ~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~ 221 (540)
..++.+++++ + .+...++++|++.|++.+...+...++++|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~- 152 (451)
T 1pw4_A 102 AAAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE- 152 (451)
T ss_dssp HHHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-
T ss_pred HHHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-
Confidence 9999998887 4 356788899999999999999999999999999888
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHh
Q 009195 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 222 ~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~~~~~~ 279 (540)
|++.+++++...++|..++|.+++++.+..| ||+.|++.+++.++..++.++.
T Consensus 153 -----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 153 -----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp -----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999888888 9999998887766655554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-20 Score=192.04 Aligned_cols=180 Identities=12% Similarity=-0.009 Sum_probs=149.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Q 009195 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (540)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~ 144 (540)
+++++.++.+.+..++..+..+.+... .+++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 455666777777777777776544444 5567889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.+++...... .+...++++|++.|++.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999999888332110 467889999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhh-hccc-------------------------hHHHHHHHHHHHHHHHHHHH
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFF 277 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~-~~~g-------------------------w~~~f~i~~i~~~~~~~~~~ 277 (540)
|++.+++++...++|..++|.+++++. +..+ ||+.|++.++..++..++++
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 5544 99999776665554444433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=177.60 Aligned_cols=167 Identities=13% Similarity=0.106 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~ 151 (540)
+.+.+..++..+......+.++ .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIA-DMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 3445556666666655555544 45678999999999999999999999999999999998 999999999999999998
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~ 231 (540)
++.++ .+...++++|++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88876 567889999999999999999999999999999988 99999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (540)
Q Consensus 232 ~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~ 274 (540)
++++....+|..++|.+++++.+..+|++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999887766554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.4e-17 Score=169.27 Aligned_cols=169 Identities=11% Similarity=-0.121 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~ 149 (540)
..+......++..+++..+.++++.|+++++|++..+.+++.+.+.++..++++++|+++||+ |||++++++.++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 455566666666667666778899999999999999999999999999999999999999998 9999999888776553
Q ss_pred HHHHHHhhhccccCCCCCcccccccccCCCCCccchhH-HHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
...+...... ... ..++.++++.+++.+...+...+...+..++.. ..|+
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcc
Confidence 2222111000 000 012234444444443333333333333332211 1155
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~ 269 (540)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 55666667788999999999999876 57999888765553
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=139.66 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc-chHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIYL 147 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~-GR~~~i~i~~~l~~ 147 (540)
+.++...+..++..+.++++..+++.|+++.+|++..+.+++.+...++..++.++.|+++||++ |||+.+.++.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 46777888888888888899999999999889999999999999999999999999999999942 88888887776655
Q ss_pred -HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 148 -AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 148 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
++.+++.+. ++ .+...+.+..++.|++.+...+....++.|.+|++.
T Consensus 332 ~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------ 379 (451)
T 1pw4_A 332 TIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 379 (451)
T ss_dssp HHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------
Confidence 444443322 11 245566677788999988888888999999999988
Q ss_pred hhhHHHHHHHHHhH-HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 227 R~~~~~~~~~~~~l-g~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
|++.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 380 ~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 380 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999998888777666665544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-11 Score=125.80 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
.++...+..++.....+.+..+++.| +++.+|++..+++...+...++..++.+++|+++||+ |||+++.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 56666677777777788888999999 8888899999999999999999999999999999997 999999999988888
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
+.+++... .+... .+..++.|++.+...+...++..|.+|++ |+
T Consensus 338 ~~~~~~~~----------------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 77766653 22332 33447888999999999999999999843 44
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHH
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~g-w~~~f~i~~i~~~~~~~ 274 (540)
.+.++.. ...+|+.++|.+.+++.+..| ++..|++.+++.++.++
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 5555544 556999999999999999988 99888876655444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-11 Score=127.91 Aligned_cols=174 Identities=10% Similarity=0.051 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Q 009195 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (540)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~---~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~ 147 (540)
.+...+..++....++....+++.|+.+.++.. ....+...++..++..++.+++|+++||+ |||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 333333333334444444456788887766532 33445666666677788899999999998 99999988887777
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++.+++.+. .+...+++..++.+++.+...+....+.+|.+|++. |
T Consensus 301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 765554432 234455556666777766666677889999999887 9
Q ss_pred hhHHHH-HHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 009195 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 228 ~~~~~~-~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~ 279 (540)
+++.++ ++....+|+.++|.+++++.+..|+...|.+.+++.+++.++.+..
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 999888 5777889999999999999988888888888777766666554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=122.91 Aligned_cols=186 Identities=12% Similarity=0.019 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHH-----HHHH
Q 009195 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT 144 (540)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~-----i~~~ 144 (540)
..+.+.+..++....++....+++.|+.+.++.+..+.+...+...++..++.++.|+++||+ |||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 345555555666666666777888899988888866677777888888888899999999998 9886554 5666
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhh
Q 009195 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (540)
Q Consensus 145 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~ 224 (540)
+..++.+++........ .+...+...+.+..++.|++.+...+....++.|.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---- 419 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---- 419 (491)
T ss_dssp HHHHHHTTTHHHHHHCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred HHHHHHHHHHHHHHhcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 66666555544321000 0000245566677788999999989999999999999999
Q ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhccc
Q 009195 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (540)
Q Consensus 225 ~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~~~~~ 282 (540)
|+++.++++...++|..+++.+.+++.+. ++.+.|.+.+++.+++.++.+...++
T Consensus 420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764 56667777666666655555554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=9.4e-09 Score=109.00 Aligned_cols=183 Identities=9% Similarity=0.012 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 009195 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (540)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~ 151 (540)
.......+....+.+.+ .+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 280 IGVMLSIFQQFVGINVV-LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHTCHHHH-HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHH-HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence 33333333333333333 3445566677888888777777777888889999999999998 999999999888887776
Q ss_pred HHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHH-HHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhH
Q 009195 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY-TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (540)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~ 230 (540)
.+...... .. .....+. ...+..+++ .+..+....+.+|.+|++. |+++
T Consensus 358 ~l~~~~~~----~~-------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~ 407 (491)
T 4gc0_A 358 SLGTAFYT----QA-------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKA 407 (491)
T ss_dssp HHHHHHHT----TC-------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHH
T ss_pred HHHHHHhc----cc-------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHH
Confidence 66554220 00 1122222 222222222 3344667789999999999 9999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhh------ccchHHHHHHHHHHHHHHHHHHHHhccccccc
Q 009195 231 FNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (540)
Q Consensus 231 ~~~~~~~~~lg~~i~p~i~~~l~~------~~gw~~~f~i~~i~~~~~~~~~~~~~~~~~~~ 286 (540)
.++.+....+++.+++.+.+.+.+ ..++.+.|++.+++.+++.+..++..|+.+.+
T Consensus 408 ~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 408 LAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 999888888888888887766543 23456677777777777777666666666544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-09 Score=110.79 Aligned_cols=164 Identities=12% Similarity=-0.097 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHH-HH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l-~~ 147 (540)
+..+...+..++.....+.+..+.+.|+++.+|.+..+.+...+...++..++.++.++++||+ ||+ +.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566677777777888888888889999988999999999999999999999999999999997 872 2233222 22
Q ss_pred HHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhh
Q 009195 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (540)
Q Consensus 148 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R 227 (540)
++......... +. .+...+++..++.|++.+...+....+..|.+| +. |
T Consensus 276 ~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----GV-------------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----HH-------------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----cc-------------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 00 245556677788899999999999999999998 56 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHH
Q 009195 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 266 (540)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~ 266 (540)
++..++++...++|..++|.+.+++.+..+|...+.+..
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999999988777877766543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-06 Score=90.89 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhcc--ch-----
Q 009195 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (540)
Q Consensus 186 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~~~~~~lg~~i~p~i~~~l~~~~--gw----- 258 (540)
+...+++..++.|++.+...+....+..|.+|++. |++++++++...++|..++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 34566677889999999999999999999999998 999999999999999999999999987643 23
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHh
Q 009195 259 ----GSAFGALAIAMGISNMLFFIG 279 (540)
Q Consensus 259 ----~~~f~i~~i~~~~~~~~~~~~ 279 (540)
+..|++.+++.+++.+++++.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALY 502 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccccccHHHHHHHHHHHHHHHHHHH
Confidence 223555555555555444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 540 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.91 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.79 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.43 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.3 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.7e-23 Score=214.29 Aligned_cols=181 Identities=12% Similarity=0.040 Sum_probs=142.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
+|..+..+++..+...+... ....+.++++ ++|++.++.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~-~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRK-NFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-SHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHH
Confidence 45444444444444433332 2334455665 5899999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.++.++++++.... .+...++++|++.|++.|...+....+++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------ 149 (447)
T d1pw4a_ 100 AAVMLFMGFVPWAT------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------ 149 (447)
T ss_dssp HHHHHHHHHCHHHH------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred HHHHhhccccchhh------------------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------
Confidence 99888887652210 245678899999999999999999999999999988
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhc
Q 009195 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFIGT 280 (540)
Q Consensus 227 R~~~~~~~~~~~~lg~~i~p~i~~~l~~~-~gw~~~f~i~~i~~~~~~~~~~~~~ 280 (540)
|++.+++++.+.++|..++|.+++.+... .+|++.|++..+..++..++.+...
T Consensus 150 r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 150 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence 99999999999999999999988877654 4799998887777665555554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=4e-18 Score=172.01 Aligned_cols=180 Identities=12% Similarity=-0.092 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Q 009195 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (540)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i 148 (540)
|..|.+.+..++..++.....+.++.|+++++|++.++.+++.+++.++..++.+++|+++||+ |||++++++.++..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4677777778888888877788899999999999999999999999999999999999999998 999999999988888
Q ss_pred HHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhh
Q 009195 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~ 228 (540)
+.+++....... ......++.+.+.+.+.+...........+..+++. ..+.
T Consensus 86 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 137 (417)
T d1pv7a_ 86 MFAPFFIFIFGP------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN 137 (417)
T ss_dssp THHHHHHHTHHH------------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHS
T ss_pred HHHHHHHhhhhh------------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhH
Confidence 777776652100 111122333334344433333333333333222211 1244
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 229 ~~~~~~~~~~~lg~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
...+........+..++|.+++++.+. +|+..+........+..++..+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 186 (417)
T d1pv7a_ 138 FEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHH
Confidence 455556667778888899888888765 4555555444444333333333
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=6.6e-13 Score=135.99 Aligned_cols=182 Identities=15% Similarity=0.065 Sum_probs=139.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Q 009195 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (540)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~ 146 (540)
+.+.++.+....++.....+++..+.+.|+.+.++++..+.+.......++..++.+++|+++||+ +|++.........
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 325 (447)
T d1pw4a_ 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFM 325 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHH
T ss_pred cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhH
Confidence 345677777788888888888999999999999999999999999999999999999999999998 8765444433333
Q ss_pred HHHHHHHHHhhhccccCCCCCcccccccccCCCCCccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhh
Q 009195 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (540)
Q Consensus 147 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~ 226 (540)
.+..+...... ..+. .+.....+..++.|++.++..+....+..|.+|++.
T Consensus 326 ~~~~~~~~~~~----~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 376 (447)
T d1pw4a_ 326 TLVTIATIVYW----MNPA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------ 376 (447)
T ss_dssp HHHHHHHHHTT----SCCT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------
T ss_pred HHHHHHHHHHH----hccc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------
Confidence 22222222210 0111 345666677778899988888899999999999988
Q ss_pred hhhHHHHHHHHHhH-HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 009195 227 LDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (540)
Q Consensus 227 R~~~~~~~~~~~~l-g~~i~p~i~~~l~~~~gw~~~f~i~~i~~~~~~~~~~~ 278 (540)
|+++.++.+...++ |..++|.+.+++.+.+||+..|++.+++.+++.++++.
T Consensus 377 ~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877776 55678999999999999999998877766655554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=3.8e-12 Score=127.31 Aligned_cols=145 Identities=10% Similarity=0.027 Sum_probs=120.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccccCCCC
Q 009195 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180 (540)
Q Consensus 101 g~~~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~GR~~~i~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (540)
+.+....+.......++..++..+.+++.||+ ||++++.++.++..++.+++...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~------------------------ 309 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA------------------------ 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC------------------------
T ss_pred ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc------------------------
Confidence 34455566777778888899999999999998 99999999998888887777664
Q ss_pred CccchhHHHHHHHHHHHHHhhcccchhhhhhhhccCCCCCchhhhhhhhHHHHH-HHHHhHHHHHHHHHHHHhhhccchH
Q 009195 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWG 259 (540)
Q Consensus 181 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~d~~~~~~~~~~~~R~~~~~~~-~~~~~lg~~i~p~i~~~l~~~~gw~ 259 (540)
.+...+++..++.|++.+...+...+++.|.+|++. |++.+++. .....+|..++|.+.|++.+.+||+
T Consensus 310 ----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~ 379 (417)
T d1pv7a_ 310 ----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ 379 (417)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHH
T ss_pred ----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence 346677778889999999999999999999999998 99999984 5667799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 009195 260 SAFGALAIAMGISNMLFFIGT 280 (540)
Q Consensus 260 ~~f~i~~i~~~~~~~~~~~~~ 280 (540)
..|++.+++.++..++.++..
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 380 GAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999888777666665555543
|