Citrus Sinensis ID: 009203

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
Protein Sequence
MSELIVKKPKQEEEEEEENGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQDNVVSSRSSPANGTNSVKVERRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEPIKSTWSGAKDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI
Secondary Structure (PSIPRED)
ccHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccEEEEEEccccccEEEccccccEEEcccccccccccccccccccEEEEEEcccccEEEccccccEEEEEEcccccEEEcccccEEEEEcccccEEEEEEccccEEEEEEEEcccccEEEEcccccccccccccEEEEEEcccccEEEEEEEccccEEEEEccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccccEEEEEcccccccEEEEEccccccccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEEccEEEEEEEEccccccEEEEEcccccEEEEEccccEEEEEEcccccccccccccEEEEEEcccccEEEEccccccEEEEEcccccccccEEcccccccEEEEEEcccccEEEEEEccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEccccccEEcccccccEEEEEEcccccccEEcccccEEEcccccEEEEEEEcccccEEEEEcccccEEEEEEEcccccccEEEcccccccccccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEEccccccccccEEEEEEEcccccEEEEEEccccEEEEEEccccccccccccEEccccccEEEEEEEcccccEEEEEccccEEEEEEEEcccEEEEEcccEEEEEEcccccccEEEEEEEcccccEEEEEEEcccccEEEEEcccccccccccEEEEEEEcccccEEEEcccccEEEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEccc
Coil and Loop (DISEMBL)
mselivkkpkqeeeeeeenggcnskdEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLrcqdnvvssrsspangtnsvkverrsispvrinegssrnksqsrtellipavnpkisepikstwsgakdpsgsstqaspaahsigivkvkgekshrnssdseIVEVRDrgtkrkfeQKEHRELIplvrtsaspatihchtsnhvsslHKRKlrslslnpvneqLFVTSALDGVIRLWqlqsrgsgasllsttdclspkhrrwpediawhpqgnslfsahtadsgdsqiSVLNLNktkgracvtflddkphvkgiINSIiflpwenpcfatggsdhAVVLWSErdaedswkpkalhrnlHSSAVMGVAGMQQKQIVLSagadkriigfdagvgradfkhqieskcmsvlpnpcdfnlfmvqtgtpgrqlrlYDIRLRQTEIhafgwkqessESQSALINqswspdglyitsgsadpvihlfdirysankpsqsiRAHQKRVFKAVWHYSHPLLISISsdlniglhki
Flexible Loop (DISEMBL)
mselivkkpkqeeeeeeenggcnskdeQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCqdnvvssrsspangtnsvkverrsispvrinegssrnksqsrtellipavnpkisepikSTWSGAKDpsgsstqaspaahsigivkvkgekshrnssdseivevrdrgtkrkfeqkehreliplvrtsaspatihCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQlqsrgsgasllSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFgwkqessesQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLlisissdlniglHKI
Low Complexity Region (SEG)
MSELIVKKPKQeeeeeeeNGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQDNVVSSRSSPANGTNSVKVERRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEPIKSTWSGAKDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNHVsslhkrklrslslNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI
Disordered region (IsUnstruct)
********************************VALIEH****VQHLR*RISY************************************************************************************************************************************************************TIHCHT***********LRSLSLNPVNEQLFVTSALDGVIRLWQL*************************DIAWH******************ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK*********LINQSWSPDGLYITSGSADPVIHLFDIRYSANK***SIRAHQKRVFKAVWHYSHPLLISISSDLNIG****
Disordered Region (DISOPRED)
*********************************ALIEHRTKEVQHLRQRISYYKSQLEEA***LEDSQSKLARLRCQD***************VKVERRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEPIKSTWSGAKDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKF*QKEHRELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI
Disordered Region (DISEMBL)
**************************EQEEALVALIEHRTKEVQHLRQRISYYKSQL************KLARLR*********************ERRSISPVR*************TELLIPAVNPKISEPIKS******************AHSIGIVKVK******************RGTKRKFEQKEHRELIPLVRTSASPATIHCHT**********KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW***********INQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI
Disordered Region (DISPRO)
**********************NSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR***************************************************NPK****************************I***K*KG*********SEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSELIVKKPKQEEEEEEENGGCNSKDEQEEALVALIEHRTKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDNVVSSRSSPANGTNSVKVERRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEPIKSTWSGAKDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	540	2.2.26 [Sep-21-2011]
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.512	0.181	0.221	2e-06
O42937	796	Probable coatomer subunit	yes	no	0.305	0.207	0.257	2e-05
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.492	0.211	0.208	2e-05
Q8H0T9	837	Katanin p80 WD40 repeat-c	no	no	0.314	0.203	0.262	3e-05
P90916	417	Probable histone-binding	yes	no	0.309	0.400	0.241	0.0001
Q4WEI5	436	Histone acetyltransferase	yes	no	0.312	0.387	0.243	0.0001
O61585	690	Katanin p80 WD40 repeat-c	no	no	0.344	0.269	0.245	0.0003
Q2UA71	436	Histone acetyltransferase	no	no	0.316	0.392	0.247	0.0003
Q39190	479	Protein pleiotropic regul	no	no	0.342	0.386	0.267	0.0003
Q96DI7	357	U5 small nuclear ribonucl	yes	no	0.509	0.770	0.205	0.0003

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 136/325 (41%), Gaps = 48/325 (14%)

Query: 222  HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS--PKHRRWPED 279
            H  ++RS+  +P N  +  + + D  +RLW +          S+ +CL     H  W   
Sbjct: 947  HTSRVRSVVFSP-NSLMLASGSSDQTVRLWDI----------SSGECLYIFQGHTGWVYS 995

Query: 280  IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN 339
            +A++  G+ L +     SGD  + + +++ ++      F   + H    + S++F   + 
Sbjct: 996  VAFNLDGSMLATG----SGDQTVRLWDISSSQ-----CFYIFQGHTS-CVRSVVFSS-DG 1044

Query: 340  PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRII 399
               A+G  D  V LW        +  +      H+S V  V       ++ S G D+ + 
Sbjct: 1045 AMLASGSDDQTVRLWDISSGNCLYTLQG-----HTSCVRSVVFSPDGAMLASGGDDQIVR 1099

Query: 400  GFDAGVGRADFKHQIESKCMSVL---PNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456
             +D   G   +  Q  +  +  L   PN        +  G+  + +RL+DI  ++     
Sbjct: 1100 LWDISSGNCLYTLQGYTSWVRFLVFSPNGV-----TLANGSSDQIVRLWDISSKKC---- 1150

Query: 457  FGWKQESSESQSALINQ-SWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF 515
                  + +  +  +N  ++SPDG  + SGS D  + L+DI  S++K    ++ H   V 
Sbjct: 1151 ----LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDI--SSSKCLYILQGHTSWVN 1204

Query: 516  KAVWHYSHPLLISISSDLNIGLHKI 540
              V++     L S SSD  + L +I
Sbjct: 1205 SVVFNPDGSTLASGSSDQTVRLWEI 1229

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|O42937|COPB2_SCHPO Probable coatomer subunit beta' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec27 PE=3 SV=2

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 33/198 (16%)

Query: 173 SDSEIVEVRDRGTKRKFEQKE-HRELI---------PLVRTSASPATIHCHTSNH----V 218
           SD   V V +  T  K  Q E H + I         P + TS+   TI C   +     V
Sbjct: 75  SDDFQVRVYNYNTGEKVTQFEAHPDYIRALVVHPTQPFLLTSSDDMTIKCFNWDMSWKCV 134

Query: 219 SSL--HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRW 276
            +   H R + SL++NP +   F +S LDG +++W   S  +  +L          H R 
Sbjct: 135 QTFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSFGSSVANFTL--------QAHDRG 186

Query: 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP 336
              + ++P G+  +     D  D+ I V +    + +ACV  L+   H   +  S  F  
Sbjct: 187 VNYVNYYPAGDKPYLITAGD--DNLIKVWDY---QTKACVRILE--GHTNNV--SFAFFH 237

Query: 337 WENPCFATGGSDHAVVLW 354
            + P   +G  D  V +W
Sbjct: 238 SKFPIIISGSEDGTVKIW 255

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 127/326 (38%), Gaps = 60/326 (18%)

Query: 222  HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE--D 279
            H   + S++ +P + ++ V+ + D  I+LW  Q          T  C+   H    E   
Sbjct: 851  HTNSVYSIAYSP-DSKILVSGSGDRTIKLWDCQ----------THICIKTLHGHTNEVCS 899

Query: 280  IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN 339
            +A+ P G +L       S D  + + N     G+    +  +          + F P + 
Sbjct: 900  VAFSPDGQTLACV----SLDQSVRLWNCRT--GQCLKAWYGNTDWAL----PVAFSP-DR 948

Query: 340  PCFATGGSDHAVVLWSERDAEDSWKPKALHRNL--HSSAVMGVAGMQQKQIVLSAGADKR 397
               A+G +D  V LW        W+      +L  H+  + G+A     Q + SA  D  
Sbjct: 949  QILASGSNDKTVKLWD-------WQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSS 1001

Query: 398  IIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMV--------QTGTPGRQLRLYDIRL 449
            +  ++   G          +C  +L    D+   +V         TG+    ++L++I  
Sbjct: 1002 VRLWNISTG----------QCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNIST 1051

Query: 450  RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA 509
             Q         +  SE    ++  +WSPDG  + S SAD  + L+D      +    +R 
Sbjct: 1052 GQC-------LKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDC--CTGRCVGILRG 1102

Query: 510  HQKRVFKAVWHYSHPLLISISSDLNI 535
            H  RV+ A++  +  ++ + S+D  +
Sbjct: 1103 HSNRVYSAIFSPNGEIIATCSTDQTV 1128

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 95/202 (47%), Gaps = 32/202 (15%)

Query: 342 FATGGSDHAVVLWSERDAEDSWKPKA-LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIG 400
             TGG DH V LW+        KP A L    HSS +  V      +++++AGA    I 
Sbjct: 32  LVTGGEDHKVNLWA------IGKPNAILSLYGHSSGIDSVT-FDASEVLVAAGAASGTIK 84

Query: 401 F----DAGVGRADFKHQIESKCMSVLPNPCDFNLF--MVQTGTPGRQLRLYDIRLRQTEI 454
                +A + R    H+  S C+SV     DF+ F     +G+    L+++DIR ++  I
Sbjct: 85  LWDLEEAKIVRTLTGHR--SNCISV-----DFHPFGEFFASGSLDTNLKIWDIR-KKGCI 136

Query: 455 HAFGWKQESSESQSALIN-QSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKR 513
           H +       +  +  +N   ++PDG ++ SG  D ++ ++D+  +A K     ++H+ +
Sbjct: 137 HTY-------KGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDL--TAGKLLTEFKSHEGQ 187

Query: 514 VFKAVWHYSHPLLISISSDLNI 535
           +    +H    LL + S+D  +
Sbjct: 188 IQSLDFHPHEFLLATGSADRTV 209

May participate in a complex which severs microtubules in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Arabidopsis thaliana (taxid: 3702)

>sp|P90916|LIN53_CAEEL Probable histone-binding protein lin-53 OS=Caenorhabditis elegans GN=lin-53 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 15/182 (8%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281
           H ++   LS NP  E L ++++ D  +  W + +  + A  L   D     H    ED+A
Sbjct: 171 HTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFK-GHESVVEDVA 229

Query: 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC 341
           WH   + +F +   D  D ++ + ++  +    C+       H    +N + F P+    
Sbjct: 230 WHVLHDGVFGS-VGD--DKKLLIWDVRTSTPGHCI-----DAH-SAEVNCLAFNPYSEFI 280

Query: 342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVL-SAGADKRIIG 400
            ATG +D  V LW  R+     + K      H   +  V      + +L S+G DKR+  
Sbjct: 281 LATGSADKTVALWDLRNL----RMKLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHV 336

Query: 401 FD 402
           +D
Sbjct: 337 WD 338

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA (By similarity). Synthetic multivulva class B (synMuvB) protein. SynMuvB proteins are required to repress the induction of vulval development by Ras signaling and probably act by forming the multiprotein DRM complex that repress transcription.

Caenorhabditis elegans (taxid: 6239)

>sp|Q4WEI5|HAT2_ASPFU Histone acetyltransferase type B subunit 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=hat2 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 12/181 (6%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281
           H ++   LS +P       T + D  +R+W L +   G  LL  +   +  H     D+ 
Sbjct: 188 HTKEGFGLSWSPHTAGQLATGSEDKTVRIWDLTTYSKGNKLLKPSRTYT-HHSSIVNDVQ 246

Query: 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKG-RACVTFLDDKPHVKGIINSIIFLPWENP 340
           +HP  +SL       S D  + +L++ +++  RA  +    +   +  IN+I F P    
Sbjct: 247 YHPLHSSLIGTV---SDDITLQILDIRESETTRAAAS---TEGQHRDAINAIAFNPAAET 300

Query: 341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIG 400
             ATG +D  + LW  R+     K K      H+ +V  ++    ++ VL++ +  R I 
Sbjct: 301 VLATGSADKTIGLWDLRNL----KTKLHSLESHTDSVTSISWHPFEEAVLASASYDRKIA 356

Query: 401 F 401
           F
Sbjct: 357 F 357

Regulatory subunit of the histone acetylase B (HAT-B) complex. The complex acetylates 'Lys-12' of histone H4 which is required for telomeric silencing.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 26/212 (12%)

Query: 329 INSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQI 388
           +N +   P       TGG D  V LW+            +  + H+S V  V     +++
Sbjct: 19  VNCLALGPMSGRVMVTGGEDKKVNLWAVGKQN-----CIISLSGHTSPVDSVKFNSSEEL 73

Query: 389 VLSAGADKRIIGFD---AGVGRADFKHQIESKCMSVLPNPCDFNLF--MVQTGTPGRQLR 443
           V++      +  +D   A + R    H+   +CM       DF+ F   V +G+    ++
Sbjct: 74  VVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCM-------DFHPFGEFVASGSTDTNVK 126

Query: 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP 503
           L+D+R R+  I+ +    +    Q  +I   +SPDG ++ + S D  I L+D+  +  K 
Sbjct: 127 LWDVR-RKGCIYTY----KGHSDQVNMIK--FSPDGKWLVTASEDTTIKLWDL--TMGKL 177

Query: 504 SQSIRAHQKRVFKAVWHYSHPLLISISSDLNI 535
            Q  + H   V    +H +  LL S SSD  +
Sbjct: 178 FQEFKNHTGGVTGIEFHPNEFLLASGSSDRTV 209

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|Q2UA71|HAT2_ASPOR Histone acetyltransferase type B subunit 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=hat2 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 11/182 (6%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281
           H ++   LS +P      VT + D  +RLW L +   G   L  +   +  H     D+ 
Sbjct: 188 HTKEGFGLSWSPHTAGHLVTGSEDKTVRLWDLTTYTKGNKALKPSRTYT-HHSSIVNDVQ 246

Query: 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC 341
           +HP  +SL    + D     + +     T+  A       +   +  IN+I F P     
Sbjct: 247 YHPLHSSLIGTVSDDITLQILDIREAETTRAAASA-----EGQHRDAINAIAFNPAAETV 301

Query: 342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVL-SAGADKRIIG 400
            ATG +D ++ LW  R+     K K      H+ +V  ++    ++ VL SA  D++I+ 
Sbjct: 302 LATGSADKSIGLWDLRNL----KTKLHTLECHTDSVTSLSWHPFEESVLASASYDRKIMF 357

Query: 401 FD 402
           +D
Sbjct: 358 WD 359

Regulatory subunit of the histone acetylase B (HAT-B) complex. The complex acetylates 'Lys-12' of histone H4 which is required for telomeric silencing.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q39190|PRL2_ARATH Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana GN=PRL2 PE=2 SV=2

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 24/209 (11%)

Query: 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK 386
           G + S+ F P  N  F TG +D  + +W             L    H   V G+A   + 
Sbjct: 171 GWVRSVAFDP-SNEWFCTGSADRTIKIWDVATGV-----LKLTLTGHIGQVRGLAVSNRH 224

Query: 387 QIVLSAGADKRIIGFDA---GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLR 443
             + SAG DK++  +D     V R+   H     C+++ P      L +V TG      R
Sbjct: 225 TYMFSAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHP-----TLDVVLTGGRDSVCR 279

Query: 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP 503
           ++DIR   T++  F    + S+  S L      P    + +GS D  I  +D+RY   K 
Sbjct: 280 VWDIR---TKMQIFVLPHD-SDVFSVLAR----PTDPQVITGSHDSTIKFWDLRY--GKS 329

Query: 504 SQSIRAHQKRVFKAVWHYSHPLLISISSD 532
             +I  H+K V     H      +S S+D
Sbjct: 330 MATITNHKKTVRAMALHPKENDFVSASAD 358

Pleiotropic regulator.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 134/340 (39%), Gaps = 65/340 (19%)

Query: 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED 279
           S H+ ++     +P N     ++  D +I LW +       + L         H     +
Sbjct: 63  SGHEGEVYCCKFHP-NGSTLASAGFDRLILLWNVYGDCDNYATLK-------GHSGAVME 114

Query: 280 IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN 339
           + ++  G+ LFSA T    D  ++V + ++T  R           VK +     F+   N
Sbjct: 115 LHYNTDGSMLFSAST----DKTVAVWD-SETGER-----------VKRLKGHTSFV---N 155

Query: 340 PCF---------ATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVL 390
            C+          TG  D  V LW  R      K  A+    ++  V+ V        ++
Sbjct: 156 SCYPARRGPQLVCTGSDDGTVKLWDIR------KKAAIQTFQNTYQVLAVTFNDTSDQII 209

Query: 391 SAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR-- 448
           S G D  I  +D    +  +  +  +  ++ L    + +  +  +      +R++D+R  
Sbjct: 210 SGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLL--SNAMDNTVRVWDVRPF 267

Query: 449 --------LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA 500
                   + Q  +H F         +  L+  SWSPDG  I +GSAD  ++++D   ++
Sbjct: 268 APKERCVKIFQGNVHNF---------EKNLLRCSWSPDGSKIAAGSADRFVYVWDT--TS 316

Query: 501 NKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
            +    +  H   + +  +H   P++IS SSD  + + +I
Sbjct: 317 RRILYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEI 356

Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
225456491	526	PREDICTED: uncharacterized WD repeat-con	0.961	0.986	0.716	0.0
356516478	533	PREDICTED: U5 small nuclear ribonucleopr	0.970	0.983	0.697	0.0
255540049	752	nucleotide binding protein, putative [Ri	0.979	0.703	0.695	0.0
224119834	493	predicted protein [Populus trichocarpa]	0.894	0.979	0.715	0.0
356507392	1494	PREDICTED: uncharacterized protein LOC10	0.970	0.350	0.686	0.0
357464935	517	WD repeat-containing protein, putative [	0.951	0.994	0.676	0.0
224134164	484	predicted protein [Populus trichocarpa]	0.890	0.993	0.682	0.0
118487896	468	unknown [Populus trichocarpa]	0.824	0.950	0.738	0.0
449454796	524	PREDICTED: uncharacterized protein LOC10	0.959	0.988	0.691	0.0
317106622	453	JHL07K02.19 [Jatropha curcas]	0.827	0.986	0.744	0.0

>gi|225456491|ref|XP_002280902.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466 [Vitis vinifera] gi|297734510|emb|CBI15757.3| unnamed protein product [Vitis vinifera]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/537 (71%), Positives = 453/537 (84%), Gaps = 18/537 (3%)

Query: 7   KKPKQEEEEE---EENGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKR 63
           +KPK E ++    EE+G  NS+DEQEEALVALIEHRTKEV+H+R+RI+YY+SQL+EAEK+
Sbjct: 4   RKPKVEVDDRITTEEDGEENSRDEQEEALVALIEHRTKEVEHIRKRITYYQSQLQEAEKK 63

Query: 64  LEDSQSKLARLRCQDNVVSSRSSPANGTNSVKVERRSISPVRINEGSSRNKSQSRTELLI 123
           L DSQ++L RLR +DN+VSSRS   NGT  VKVERRS SP+++         QSR ELLI
Sbjct: 64  LLDSQAQLGRLRSKDNLVSSRSPLDNGTKKVKVERRSTSPLQL---------QSRPELLI 114

Query: 124 PAVNPKISEPIKSTWSGAKDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDR 183
           PAVNPKIS+P+K   +G +  S +   A    HS+G  KVK EKSH +SS+ E+VEV+D+
Sbjct: 115 PAVNPKISQPVKLADAGTRARSPTPNHA----HSVG--KVKWEKSHGSSSEREMVEVQDK 168

Query: 184 GTKRKFEQKEHRELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSA 243
           GTKRKFE KEH+ELI  + TS+SP  + C++S+H+SS HKRKLRSL L PVN QLF TSA
Sbjct: 169 GTKRKFEPKEHKELITSIATSSSPVIVRCYSSSHISSQHKRKLRSLVLCPVNNQLFATSA 228

Query: 244 LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS 303
           LDG++ LWQ+Q+RGSGASLLS TDCLS K RRWPED+AWHP+GNS+FS + AD GDSQIS
Sbjct: 229 LDGIVNLWQIQARGSGASLLSATDCLSQKQRRWPEDMAWHPEGNSIFSVYNADDGDSQIS 288

Query: 304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSW 363
           VLNLN+TKG A VTFL++KPHVKGIINSI F+PWENPCF TGGSDHAVVLW+E+D E  W
Sbjct: 289 VLNLNRTKGGARVTFLEEKPHVKGIINSISFMPWENPCFVTGGSDHAVVLWNEKDEEKLW 348

Query: 364 KPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLP 423
           KPKALHRN+HSSAVMGVAGMQQKQIVLS GADKRIIG D   GR DFKHQI+SKCMS++P
Sbjct: 349 KPKALHRNMHSSAVMGVAGMQQKQIVLSVGADKRIIGLDLHTGRTDFKHQIDSKCMSIVP 408

Query: 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT 483
           NPCDFNL+MVQ GTPG+QLRL+DIRLRQTE+HAFGWKQESS+S SALINQ+WSPDGLYIT
Sbjct: 409 NPCDFNLYMVQAGTPGKQLRLFDIRLRQTELHAFGWKQESSDSLSALINQTWSPDGLYIT 468

Query: 484 SGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
           SGS DPVIH+FDIR  A+KPSQSI+AHQKRVFKA+WH+S PLLISISSDLNIGLHK+
Sbjct: 469 SGSVDPVIHIFDIRSYAHKPSQSIKAHQKRVFKAIWHHSLPLLISISSDLNIGLHKL 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516478|ref|XP_003526921.1| PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Glycine max]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/533 (69%), Positives = 445/533 (83%), Gaps = 9/533 (1%)

Query: 14  EEEEENGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLAR 73
           E  EENGG  S++EQEEALVALIEHRT EV++LR RI+YYK+QL+EAEKRL+DS+SKLAR
Sbjct: 2   EPNEENGGSTSREEQEEALVALIEHRTHEVKNLRHRIAYYKTQLDEAEKRLQDSESKLAR 61

Query: 74  LRCQDNVVSSRSSPANGTNSVKVERRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEP 133
           LR Q   VSSRS+  +G  ++K ERRS SP+  NEGS++N+ QS+ ELLIP+ NPKIS+P
Sbjct: 62  LRGQ--TVSSRSTLDDGIKTLKTERRSNSPIDRNEGSTKNRHQSKPELLIPSANPKISQP 119

Query: 134 IKSTWSGAKDPSGSSTQASPAAHSIGIV----KVKGEKSHRN--SSDSEIVEVRDRGTKR 187
           +    S +K    SS++A+P  HS  I     + K +KSH N  SS+ +  EV+++GTKR
Sbjct: 120 VLLPKSFSKASITSSSEATPGVHSSPITGGSSRGKSDKSHSNRLSSEQQKTEVKEKGTKR 179

Query: 188 KFEQKEHRELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGV 247
           KFEQKEH+ELIPL+R S+SP+ + C TSNH+SS HKRKLRS++L PVN+QLFVTSALDGV
Sbjct: 180 KFEQKEHKELIPLIRKSSSPSLVTCQTSNHISSQHKRKLRSIALCPVNDQLFVTSALDGV 239

Query: 248 IRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL 307
           +  WQ+Q++G+GAS LSTTDC S K RRWPED+AWHP+GNSLFS ++AD GDSQ+S+ NL
Sbjct: 240 VNFWQVQAKGAGASRLSTTDCASQKQRRWPEDLAWHPEGNSLFSVYSADGGDSQVSITNL 299

Query: 308 NKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA 367
           NK  G   V FL+DKPHVKGIIN I+F+PWEN CF TGGSDHAV+LWSE+D E  WKPKA
Sbjct: 300 NKGPGGERVKFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVILWSEQDDE-KWKPKA 358

Query: 368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCD 427
           LHRNLHSSAVMGVAGMQ KQ+VLS GAD+RI G+D   GRADFKHQ++SKCMSVLPNP D
Sbjct: 359 LHRNLHSSAVMGVAGMQHKQMVLSVGADRRIFGYDVRAGRADFKHQVDSKCMSVLPNPSD 418

Query: 428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA 487
           FNLFMVQTGT  RQLRL+DIRLR TE+HAFGWKQESS+SQSALINQ+WSPDGLYITSGSA
Sbjct: 419 FNLFMVQTGTHERQLRLFDIRLRNTELHAFGWKQESSDSQSALINQAWSPDGLYITSGSA 478

Query: 488 DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
           DPVIH+FDIRY+A+KPSQSIR HQKRVF+A+W  S PL+ISISSDLNIGLHK+
Sbjct: 479 DPVIHIFDIRYTAHKPSQSIRVHQKRVFRAMWLQSIPLVISISSDLNIGLHKV 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540049|ref|XP_002511089.1| nucleotide binding protein, putative [Ricinus communis] gi|223550204|gb|EEF51691.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/541 (69%), Positives = 451/541 (83%), Gaps = 12/541 (2%)

Query: 5   IVKKPKQEEEEEEENGGC-----NSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEE 59
           I+KKPK E+   EE  G       S  EQEEALVALIEHR +EV HL++RISYY+SQL+E
Sbjct: 7   ILKKPKLEQHSGEEENGGEREVGTSLQEQEEALVALIEHRAREVDHLKRRISYYQSQLQE 66

Query: 60  AEKRLEDSQSKLARLRCQDNVVSSRSSPANGTNSVKVERRSISPVRINEGSSRNKSQSRT 119
            E +L DS+S+LARLR Q    S+++SP +GT SVKV    I+P+ INEGSSR++ Q++T
Sbjct: 67  TENKLHDSESRLARLRAQRIAPSAKASPGSGTKSVKV----IAPININEGSSRSQPQAKT 122

Query: 120 ELLIPAVNPKISEPIKSTWSGAKDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVE 179
           ELLIPA+NPK  +P  S   G K  + S+TQ+SP+ H+  + K+KGEK+ R+S ++E   
Sbjct: 123 ELLIPAINPKTFQPRISGGFGTKASAVSTTQSSPSRHTNTVPKLKGEKNCRSSPEAE--- 179

Query: 180 VRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLF 239
           V  RGTKRK EQKEH+ELIPL+R+S+SP+TI C+ SN++SS HKRKLRSL L PVN+QLF
Sbjct: 180 VEARGTKRKLEQKEHKELIPLIRSSSSPSTIDCYASNNISSQHKRKLRSLILCPVNDQLF 239

Query: 240 VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299
            TSALDGV+ LWQ+QSRGS ASLLS TDCLSPK RRWPED+AWHP GNSLF  ++AD GD
Sbjct: 240 ATSALDGVVNLWQIQSRGSSASLLSGTDCLSPKDRRWPEDLAWHPLGNSLFCTYSADGGD 299

Query: 300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA 359
           SQIS+LNLNK +GRA +T+L+DKPHVKGIINSI F+PWEN CFATGGSDHAVV W+E+D 
Sbjct: 300 SQISILNLNKIQGRARITYLEDKPHVKGIINSISFMPWENACFATGGSDHAVVFWNEKDN 359

Query: 360 EDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCM 419
           E  WKPK LHRNLHSSAVMGVAG+QQK IVLSAGAD+RIIGFD   GRADFKHQ+++KCM
Sbjct: 360 EYLWKPKTLHRNLHSSAVMGVAGLQQKHIVLSAGADRRIIGFDVQSGRADFKHQLDNKCM 419

Query: 420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG 479
           SV+PNPCDFNLFMVQTG P +QLRL+DIRLRQTE+H+FG+KQESS+SQSALINQ+WSPDG
Sbjct: 420 SVVPNPCDFNLFMVQTGIPEKQLRLFDIRLRQTELHSFGFKQESSDSQSALINQAWSPDG 479

Query: 480 LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539
           LY+TSGS DP+IH+FDIRY+++KPSQS+RAH KRVFKAVWH S PLLISISSDL IGLHK
Sbjct: 480 LYLTSGSVDPMIHVFDIRYNSHKPSQSVRAHNKRVFKAVWHSSLPLLISISSDLLIGLHK 539

Query: 540 I 540
           I
Sbjct: 540 I 540

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119834|ref|XP_002318173.1| predicted protein [Populus trichocarpa] gi|222858846|gb|EEE96393.1| predicted protein [Populus trichocarpa]

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/514 (71%), Positives = 427/514 (83%), Gaps = 31/514 (6%)

Query: 28  QEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQDNV-VSSRSS 86
           Q+ A +ALIEHR+ EVQHL+QR+SYYK+QL EAEKRLEDSQ+KLARL  + N  V+++ S
Sbjct: 10  QKVAFIALIEHRSHEVQHLKQRLSYYKTQLVEAEKRLEDSQTKLARLSGRSNASVANKPS 69

Query: 87  PANGTNSVKVERRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEPIKSTWSGAKDPSG 146
             NG   VK+ER+S SPVR+NE SS                      I+  +S A     
Sbjct: 70  VENGIKKVKMERKSPSPVRLNEASS---------------------SIEKPYSAANVKVE 108

Query: 147 SSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSAS 206
            S  A         VKVK EK HR+SSD E+VE++DRG KRK EQKEH+ELIPLV  S++
Sbjct: 109 KSNSA---------VKVKMEKCHRSSSDVEVVEIQDRGNKRKIEQKEHKELIPLVSRSSA 159

Query: 207 PATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTT 266
           P T+HCHTSNH+SS HKRKLRS+++ PVN+QLFV+SALDG+I LWQLQ+RGSGASLLSTT
Sbjct: 160 PCTVHCHTSNHISSQHKRKLRSVAVCPVNDQLFVSSALDGMINLWQLQARGSGASLLSTT 219

Query: 267 DCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVK 326
           D +SP  RRWPEDIAWHP GNSLFSA+TADSGD+QISVLNLNKT+GRA VTFL+DKPH+K
Sbjct: 220 DSVSPVQRRWPEDIAWHPLGNSLFSAYTADSGDAQISVLNLNKTQGRARVTFLEDKPHIK 279

Query: 327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK 386
           GIIN I F+PWEN CF TGGSDH VVLW+E+D E+SWKPKALHRN+HSSAVMGVAGMQQK
Sbjct: 280 GIINGIEFMPWENTCFVTGGSDHGVVLWNEKDEENSWKPKALHRNMHSSAVMGVAGMQQK 339

Query: 387 QIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD 446
           QIVLSAGADKRI+GFD  VGRADFKHQ++S+CMSVLPNPCDFNLFMVQTGT G+QLRL+D
Sbjct: 340 QIVLSAGADKRIVGFDVQVGRADFKHQLDSRCMSVLPNPCDFNLFMVQTGTLGKQLRLFD 399

Query: 447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQS 506
           IRLRQTEIH+FG+KQESS+SQSALINQ+WSPDGLY+TSGS DPVIH+FDIRY+ +KPSQS
Sbjct: 400 IRLRQTEIHSFGFKQESSDSQSALINQAWSPDGLYLTSGSVDPVIHVFDIRYNYHKPSQS 459

Query: 507 IRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
           I+AHQKRVFKAVWHYS PLLISISSDL+IGLHKI
Sbjct: 460 IKAHQKRVFKAVWHYSLPLLISISSDLHIGLHKI 493

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507392|ref|XP_003522451.1| PREDICTED: uncharacterized protein LOC100798141 [Glycine max]

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/533 (68%), Positives = 444/533 (83%), Gaps = 9/533 (1%)

Query: 14  EEEEENGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLAR 73
           E  EENGG  S++EQEEALVALIEHRT EV++LR RI+YYK+QL+EAEKRL+DS+SKLAR
Sbjct: 2   EPNEENGGSTSREEQEEALVALIEHRTHEVKNLRHRIAYYKTQLDEAEKRLQDSESKLAR 61

Query: 74  LRCQDNVVSSRSSPANGTNSVKVERRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEP 133
           LR Q   VSSRS+  +G  ++K + RS SP+  NE S++++ QS+ ELLIP++NPKIS+P
Sbjct: 62  LRGQ--TVSSRSTLDDGIETLKTKSRSSSPIDRNEVSTKSQHQSKPELLIPSLNPKISQP 119

Query: 134 IKSTWSGAKDPSGSSTQASPAAHSIGIV------KVKGEKSHRNSSDSEIVEVRDRGTKR 187
           +    S +K    SS++A+P  H+  I       K    +S+R SS+ +  EV+++GTKR
Sbjct: 120 VLLPKSSSKASITSSSEATPGVHNSPITGGSSRGKSDKSQSNRLSSEQQKTEVKEKGTKR 179

Query: 188 KFEQKEHRELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGV 247
           KFEQK H+ELIPLVR S+SP+ + C TSNH+SS HKRKLRS++L PVN+QLFVTSALDGV
Sbjct: 180 KFEQKGHKELIPLVRKSSSPSLVTCQTSNHISSQHKRKLRSIALCPVNDQLFVTSALDGV 239

Query: 248 IRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL 307
           +  WQ+Q++G+GAS LSTTDC S K RRWPED+AWHP+GNSLFS ++AD GDSQ+S+ NL
Sbjct: 240 VNFWQVQAKGAGASRLSTTDCASQKQRRWPEDLAWHPEGNSLFSVYSADGGDSQVSITNL 299

Query: 308 NKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA 367
           NK +G   V FL+DKPHVKGIIN I+F+PWEN CF TGGSDHAV+LW+E+D E  WKPKA
Sbjct: 300 NKGQGGERVKFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVILWNEQDDE-KWKPKA 358

Query: 368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCD 427
           LHRNLHSSAVMGVAGMQQKQ+VLS GAD+RI G+D  VGRADFKHQ++SKCMSVLPNP D
Sbjct: 359 LHRNLHSSAVMGVAGMQQKQMVLSVGADRRIFGYDVRVGRADFKHQVDSKCMSVLPNPSD 418

Query: 428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA 487
           FNLFMVQTGT  RQLRL+DIRLR TE+HAFGWKQESS+SQSALINQ+WSPDG YITSGSA
Sbjct: 419 FNLFMVQTGTHERQLRLFDIRLRNTELHAFGWKQESSDSQSALINQAWSPDGHYITSGSA 478

Query: 488 DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
           DPVIH+FDIRY+A+KPSQSIRAHQKRVF+A+W  S PL+ISISSDLNIGLHK+
Sbjct: 479 DPVIHIFDIRYTAHKPSQSIRAHQKRVFRAMWLQSIPLVISISSDLNIGLHKV 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464935|ref|XP_003602749.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355491797|gb|AES73000.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/525 (67%), Positives = 422/525 (80%), Gaps = 11/525 (2%)

Query: 16  EEENGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR 75
           EEE+    S++EQEEALVALIEHRT+EV +LR R++Y K+QL++AEKRL+DS+SKLARLR
Sbjct: 2   EEEDIEITSREEQEEALVALIEHRTREVNNLRHRLAYTKNQLDDAEKRLKDSESKLARLR 61

Query: 76  CQDNVVSSRSSPANGTNSVKVERRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEPIK 135
            Q     + S   NGT +VK ERRS SP+  NE S ++  QS+TEL+IPAV PKIS    
Sbjct: 62  GQTTKKITNSDDDNGTVAVKKERRSNSPIDRNERSYKSNKQSKTELVIPAVTPKISRS-- 119

Query: 136 STWSGAKDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHR 195
                    SG  + +  A  S+    V G KS ++  D + VE +D+GTKRKFEQKEH+
Sbjct: 120 ---------SGKGSVSEVAVSSVHTSSVSGGKSVKSKIDQQNVEGKDKGTKRKFEQKEHQ 170

Query: 196 ELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS 255
           ELIPL+R S+S   +HC +SNH+SS HKRKLRS++L P N+QLF TSALDG++  W++Q+
Sbjct: 171 ELIPLIRKSSSKNLVHCQSSNHISSQHKRKLRSIALCPANDQLFATSALDGLVNFWKVQA 230

Query: 256 RGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC 315
           +GS ASLL++TDC S K RRWPEDIAWHP+GN LFS +TAD GDSQISV N NK KG   
Sbjct: 231 KGSSASLLNSTDCASQKQRRWPEDIAWHPEGNRLFSVYTADGGDSQISVTNWNKIKGVER 290

Query: 316 VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS 375
           VTFL+DKPHVKGIIN I+F+PWE+ CF TGGSDHAVVLW E+D ED WKP+ LHRNLHSS
Sbjct: 291 VTFLEDKPHVKGIINGIVFMPWEDTCFVTGGSDHAVVLWREQDDEDKWKPRPLHRNLHSS 350

Query: 376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQT 435
           AVMGVAGMQQKQIVLSAGAD+RI GFD G GRA+F HQI+SKCMSV+PNP DFNLFMVQT
Sbjct: 351 AVMGVAGMQQKQIVLSAGADRRIFGFDVGAGRAEFTHQIDSKCMSVVPNPVDFNLFMVQT 410

Query: 436 GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495
           GT  +QLRL+DIRLR+TE+HAFGWKQESSESQSALINQ+WSPDGLYITSGSADPVIH+FD
Sbjct: 411 GTHEKQLRLFDIRLRRTELHAFGWKQESSESQSALINQAWSPDGLYITSGSADPVIHIFD 470

Query: 496 IRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
           IRY+ N+PSQSI+AHQKRVF A+W  S PLLISISSDLNIGLH +
Sbjct: 471 IRYNLNRPSQSIKAHQKRVFGALWLQSIPLLISISSDLNIGLHTL 515

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134164|ref|XP_002321752.1| predicted protein [Populus trichocarpa] gi|222868748|gb|EEF05879.1| predicted protein [Populus trichocarpa]

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/517 (68%), Positives = 421/517 (81%), Gaps = 36/517 (6%)

Query: 26  DEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQDNVVS-SR 84
           +EQ+ AL+ALIEHR++ +QHL+QR+SYY++QL EAEKRLE+SQ KL RL  + N  + ++
Sbjct: 2   EEQKVALIALIEHRSRVLQHLKQRVSYYQTQLVEAEKRLEESQVKLGRLSGKGNATAPNK 61

Query: 85  SSPANGTNSVKVERRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEPIKSTWSGAKDP 144
            S  NG  +VKVER+S SPVR+NE S             P   P +++ +K   S +   
Sbjct: 62  PSVENGIKNVKVERKSPSPVRVNEAS-------------PGSQPHVAD-VKVEKSNS--- 104

Query: 145 SGSSTQASPAAHSIGIVKVKGEKSHRNSS-DSEIVEVRDRGTKRKFEQKEHRELIPLVRT 203
                             VK E+SH++SS D E++E++DRGTKRK EQKEH+ELIPLV  
Sbjct: 105 -----------------DVKVERSHKSSSPDVEVIEIQDRGTKRKIEQKEHKELIPLVSR 147

Query: 204 SASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLL 263
           S+SP T+HCHTSNH+ S HKRKLRS+++ P N+QLFV+SALDG++ LWQLQ+RGSGAS+L
Sbjct: 148 SSSPCTVHCHTSNHIPSQHKRKLRSVAVCPANDQLFVSSALDGMVHLWQLQARGSGASIL 207

Query: 264 STTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP 323
           STTDC+SP  RRWPEDIAWHP GNSLFSA+TADSGDSQIS+LNLNK +GRA VTFLDDKP
Sbjct: 208 STTDCVSPLQRRWPEDIAWHPLGNSLFSAYTADSGDSQISILNLNKMQGRARVTFLDDKP 267

Query: 324 HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM 383
           H+KG INSI F+PWEN CF TG SDH VVLW+E+D E+ WKPK LHRNLHSSAVMGVAGM
Sbjct: 268 HIKGTINSIEFMPWENTCFVTGCSDHGVVLWNEKDDENLWKPKILHRNLHSSAVMGVAGM 327

Query: 384 QQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLR 443
           QQKQIVLSAGADKRI+GFD  VGRADFKHQ++SKCMSVLPNPCDFNLFMVQTGT G+QLR
Sbjct: 328 QQKQIVLSAGADKRIVGFDVQVGRADFKHQLDSKCMSVLPNPCDFNLFMVQTGTHGKQLR 387

Query: 444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP 503
           L+D RL+Q EIH+FG+KQESS+SQSAL NQ+WSPDGLY+TSGS DPVIH+FDIRY+ +KP
Sbjct: 388 LFDNRLKQMEIHSFGFKQESSDSQSALTNQAWSPDGLYLTSGSVDPVIHIFDIRYNYDKP 447

Query: 504 SQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
           SQSI+AHQKRVFKAVWHYS PLLISISSDL+IGLHKI
Sbjct: 448 SQSIKAHQKRVFKAVWHYSLPLLISISSDLHIGLHKI 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487896|gb|ABK95770.1| unknown [Populus trichocarpa]

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/467 (73%), Positives = 399/467 (85%), Gaps = 22/467 (4%)

Query: 96  VERRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEPIKSTWSGAKDPSGSSTQASPAA 155
           +ER+S SPVR+NE SS ++ QSRTEL+IPAVNPK+ + +KS  SGA+   GSS   S  A
Sbjct: 1   MERKSPSPVRLNEASSSSQPQSRTELVIPAVNPKVPQTVKSVGSGARISCGSSAHLSSLA 60

Query: 156 HSIGIV----------------------KVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKE 193
            S G+V                      KVK EK HR+SSD E+VE++DRG KRK EQKE
Sbjct: 61  PSNGVVNVKVEKPYSAANVKVEKSNSAVKVKMEKCHRSSSDVEVVEIQDRGNKRKIEQKE 120

Query: 194 HRELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQL 253
           H+ELIPLV  S++P T+HCHTSNH+SS HKRKLRS+++ PVN+QLFV+SALDG+I LWQL
Sbjct: 121 HKELIPLVSRSSAPCTVHCHTSNHISSQHKRKLRSVAVCPVNDQLFVSSALDGMINLWQL 180

Query: 254 QSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGR 313
           Q+RGSGASLLSTTD +SP  RRWPEDIAWHP GNSLFSA+TADSGD+QISVLNLNKT+GR
Sbjct: 181 QARGSGASLLSTTDSVSPVQRRWPEDIAWHPLGNSLFSAYTADSGDAQISVLNLNKTQGR 240

Query: 314 ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH 373
           A VTFL+DKPH+KGIIN I F+PWEN CF TGGSDH VVLW+E+D E+SWKPKALHRN+H
Sbjct: 241 ARVTFLEDKPHIKGIINGIEFMPWENTCFVTGGSDHGVVLWNEKDEENSWKPKALHRNMH 300

Query: 374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMV 433
           SSAVMGVAGMQQKQIVLSAGADKRI+GFD  VGRADFKHQ++S+CMSVLPNPCDFNLFMV
Sbjct: 301 SSAVMGVAGMQQKQIVLSAGADKRIVGFDVQVGRADFKHQLDSRCMSVLPNPCDFNLFMV 360

Query: 434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHL 493
           QTGT G+QLRL+DIRLRQTEIH+FG+KQESS+SQSALINQ+WSPDGLY+TSGS DPVIH+
Sbjct: 361 QTGTLGKQLRLFDIRLRQTEIHSFGFKQESSDSQSALINQAWSPDGLYLTSGSVDPVIHV 420

Query: 494 FDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
           FDIRY+ +KPSQSI+AHQKRVFKAVWHYS PLLISISSDL+IGLHKI
Sbjct: 421 FDIRYNYHKPSQSIKAHQKRVFKAVWHYSLPLLISISSDLHIGLHKI 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454796|ref|XP_004145140.1| PREDICTED: uncharacterized protein LOC101220523 [Cucumis sativus] gi|449473874|ref|XP_004154008.1| PREDICTED: uncharacterized protein LOC101207060 [Cucumis sativus] gi|449523433|ref|XP_004168728.1| PREDICTED: uncharacterized LOC101207060 [Cucumis sativus]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/528 (69%), Positives = 431/528 (81%), Gaps = 10/528 (1%)

Query: 14  EEEEENGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLAR 73
           E  E+  G  SK+EQEEALVALI+HR  EVQ+L+ R+SYY SQLEEA+KRL+D++SKLAR
Sbjct: 3   EPAEDIDGITSKEEQEEALVALIDHRCHEVQNLKHRVSYYTSQLEEAQKRLQDTESKLAR 62

Query: 74  LRCQDNVVSSRSSPANGTNSVKVERRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEP 133
           LR Q N VSS+ S  +   SVKVE+       +NEGS R +  S+ EL+IPAV PK S+ 
Sbjct: 63  LRRQSNAVSSKDSLRSRAVSVKVEQT------VNEGS-RPQPVSKPELVIPAVVPKTSQN 115

Query: 134 IKSTWSGAKDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQ-- 191
                +GAK  + S  Q+SP+ H   +VKV+G+K+  N+S  E     DRGTKRK EQ  
Sbjct: 116 SALAGNGAKASNSSRAQSSPS-HIKNVVKVEGDKNIGNTSLRETSNTPDRGTKRKLEQQF 174

Query: 192 KEHRELIPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLW 251
           KEH+ELIPL+R+S+SP+ I C  SNH+SS HKRKLRSL   PVNEQLFVTSALDGV+ LW
Sbjct: 175 KEHKELIPLIRSSSSPSQIRCVGSNHISSQHKRKLRSLISCPVNEQLFVTSALDGVVNLW 234

Query: 252 QLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK 311
           QLQ+RGS ASLLS+ DC+SPK RRWPED+AWHP+GN +F  ++AD GDSQ+S++NLNK++
Sbjct: 235 QLQARGSSASLLSSADCVSPKQRRWPEDMAWHPEGNRVFLVYSADGGDSQVSIMNLNKSE 294

Query: 312 GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN 371
           G+A VTFL+DKPHVKGIINSIIFLPW++  F TGGSDHAV+ W E D +  WKPKALHR+
Sbjct: 295 GKARVTFLEDKPHVKGIINSIIFLPWDSTSFITGGSDHAVIQWKEGDGDKRWKPKALHRS 354

Query: 372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF 431
           LHSSAVMGVAGMQQK IVLSAGADKRI+GFD  VGR +F+HQIESKCMS+LPNPCDFNLF
Sbjct: 355 LHSSAVMGVAGMQQKPIVLSAGADKRILGFDVNVGRTEFRHQIESKCMSILPNPCDFNLF 414

Query: 432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVI 491
           MVQTGTPG+QLRLYDIRLRQTE+HAFGW+Q+SSESQSALINQ+WSPDGL +TSGSADPVI
Sbjct: 415 MVQTGTPGKQLRLYDIRLRQTELHAFGWEQKSSESQSALINQAWSPDGLILTSGSADPVI 474

Query: 492 HLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK 539
           HLFDIRY+ +KPSQSI AH KRVFKAVW  S PLLISISSDLNIGLHK
Sbjct: 475 HLFDIRYNLHKPSQSISAHHKRVFKAVWLESLPLLISISSDLNIGLHK 522

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106622|dbj|BAJ53129.1| JHL07K02.19 [Jatropha curcas]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/461 (74%), Positives = 403/461 (87%), Gaps = 14/461 (3%)

Query: 85  SSPANGTNSVKVE-RRSISPVRINEGSSRNKSQSRTELLIPAVNPKISEPIKSTWSGAKD 143
           +S  NGT S+K+E  RSISP+ + E SS N+SQSRTELLIPA +PKI +PIKS+ S AK 
Sbjct: 1   ASQGNGTKSLKMEGSRSISPIHVTECSSENQSQSRTELLIPAASPKIFQPIKSSGSVAKA 60

Query: 144 PSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFE----QKEHRELIP 199
              SSTQ+SP+ H   I KVK EKS+R+S D     V +RGTKRK E    QKEH+ELIP
Sbjct: 61  SGVSSTQSSPSIH---ISKVKAEKSYRSSPD-----VEERGTKRKHEPKEIQKEHKELIP 112

Query: 200 LVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSG 259
           L+R+S SP TI C+T+NH+ S HKRKLRSL+L PVN++LFVTSALDG+I LW++QSRGSG
Sbjct: 113 LLRSSTSPCTIRCYTNNHIPSQHKRKLRSLALCPVNDKLFVTSALDGMIHLWEVQSRGSG 172

Query: 260 ASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFL 319
           ASLLS+TDC+S KHRRWPEDI WHP GNSLFS ++AD GDSQIS+LNLNKT+G+A VT+L
Sbjct: 173 ASLLSSTDCMSSKHRRWPEDIVWHPSGNSLFSVYSADGGDSQISILNLNKTQGKARVTYL 232

Query: 320 DDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG 379
           +DKPH+KGIINSI+F PW+N CFATGGSDHAV+LW+E+D + SWKPKALHRN+HSSAVMG
Sbjct: 233 EDKPHLKGIINSIVFTPWDNACFATGGSDHAVILWNEKD-DISWKPKALHRNMHSSAVMG 291

Query: 380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPG 439
           VAG+QQK IVLSAGADKRIIGFD  VGRADFKHQ+++KCMSVLPNPCDFNLFMVQTGTP 
Sbjct: 292 VAGLQQKHIVLSAGADKRIIGFDVQVGRADFKHQLDNKCMSVLPNPCDFNLFMVQTGTPE 351

Query: 440 RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS 499
           +QLRL+DIRLRQTE+H+FG+KQESS+SQSALINQ+WSPDGLY+TSGS DPVIH+FDIRY+
Sbjct: 352 KQLRLFDIRLRQTELHSFGFKQESSDSQSALINQAWSPDGLYLTSGSVDPVIHVFDIRYN 411

Query: 500 ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
           +NKPSQSIRAHQKRVFKAVWHYS PL+ISISSDL+IGLHKI
Sbjct: 412 SNKPSQSIRAHQKRVFKAVWHYSLPLMISISSDLHIGLHKI 452

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
TAIR|locus:2157338	512	AT5G50970 [Arabidopsis thalian	0.746	0.787	0.667	3.3e-160
TAIR|locus:2147690	656	AT5G19920 "AT5G19920" [Arabido	0.666	0.548	0.546	1.6e-115
FB|FBgn0027524	331	CG3909 [Drosophila melanogaste	0.335	0.546	0.253	1.5e-07
TAIR|locus:2043929	343	AT2G43770 "AT2G43770" [Arabido	0.344	0.542	0.246	3.5e-06
UNIPROTKB|Q9NSS8	127	DKFZp434D199 "Putative unchara	0.127	0.543	0.309	0.0001
ZFIN|ZDB-GENE-040426-978	347	snrnp40 "small nuclear ribonuc	0.379	0.590	0.237	0.00013
TAIR|locus:2154438	837	AT5G23430 "AT5G23430" [Arabido	0.316	0.204	0.269	0.00023
TAIR|locus:2150788	839	AT5G08390 "AT5G08390" [Arabido	0.318	0.205	0.285	0.00023
DICTYBASE|DDB_G0271788	355	wdr57 "putative U5 small nucle	0.446	0.678	0.222	0.00029
UNIPROTKB|Q96DI7	357	SNRNP40 "U5 small nuclear ribo	0.342	0.518	0.22	0.00038

TAIR|locus:2157338 AT5G50970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1420 (504.9 bits), Expect = 3.3e-160, Sum P(2) = 3.3e-160
 Identities = 277/415 (66%), Positives = 325/415 (78%)

Query:   127 NPKISEPIKSTWSGAKDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTK 186
             +P  S+ ++   S + D   SS  +S +     +VK K E S R+S +     V+DRG K
Sbjct:   108 SPSPSKTLRP--SDSSDHPRSSCGSSVSKAKTVVVKQKSETS-RDSPN-----VKDRGIK 159

Query:   187 RKFEQKEHRELIPLVRTSASPATIHCHTSNHVXXXXXXXXXXXXXNPVNEQLFVTSALDG 246
             RKFEQKEH+ELI L+  ++SP TI CHTSN +              PVNEQLF TS+LDG
Sbjct:   160 RKFEQKEHKELIRLIARNSSPTTIKCHTSNQISSQHKRKLRSLILCPVNEQLFATSSLDG 219

Query:   247 VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN 306
             ++ LWQLQ     ASLLSTTDCLS K RRW ED+AWHP GN+LFS +TAD GDSQIS+LN
Sbjct:   220 MVSLWQLQPGRLVASLLSTTDCLSRKQRRWAEDMAWHPSGNTLFSVYTADDGDSQISILN 279

Query:   307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDS-WKP 365
             LNKT+    VTFL++KPHVKGIIN+I F+PWEN CF TGGSDHAVVLW+E D E++ WK 
Sbjct:   280 LNKTRE---VTFLENKPHVKGIINNIKFMPWENTCFVTGGSDHAVVLWNESDDEENKWKS 336

Query:   366 KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNP 425
             K LHRNLHS+AVMGV GM+ K ++LS GADKRI GFD  VGRAD+KHQI+ KCMSVL NP
Sbjct:   337 KPLHRNLHSAAVMGVDGMKNKNVILSVGADKRIYGFDVQVGRADYKHQIDYKCMSVLANP 396

Query:   426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG 485
             CDFNLFMVQ+G P +QLRL+DIRLR+TE+H+FGWKQ+SSESQSALINQSWSPDGLYITSG
Sbjct:   397 CDFNLFMVQSGEPEKQLRLFDIRLRKTELHSFGWKQDSSESQSALINQSWSPDGLYITSG 456

Query:   486 SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
             S DPVIH+FDIRY+A KP+QSI+AHQKRVFKA WHYS PLLISISSDLNIGLHKI
Sbjct:   457 SVDPVIHVFDIRYNARKPTQSIKAHQKRVFKAEWHYSQPLLISISSDLNIGLHKI 511

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2147690 AT5G19920 "AT5G19920" [Arabidopsis thaliana (taxid:3702)]

 Score = 1057 (377.1 bits), Expect = 1.6e-115, Sum P(2) = 1.6e-115
 Identities = 198/362 (54%), Positives = 259/362 (71%)

Query:   180 VRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNHVXXXXXXXXXXXXXNPVNEQLF 239
             +  +G + K E + H ELI L+  S+   TI   T+  +             +P N +LF
Sbjct:   295 ISQQGQQEKSEFRGHDELIALIGRSSLRPTIEGRTAGMLPSCHTKRMRSLALSPSNRELF 354

Query:   240 VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD 299
              TSALDG +  W+LQS  S A+L  T + ++   ++W EDIAWHP  N+LFS +TAD G 
Sbjct:   355 ATSALDGAVHFWKLQSDRSTATLFKTVNRVAVDQKKWAEDIAWHPHKNALFSVYTADDGH 414

Query:   300 SQISVLNLNKTKGRACVT-FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD 358
              QIS + LN+  G  C + F++D+PH KG+IN I+F PW++PCF TGGSDHAVVLW ++ 
Sbjct:   415 PQISAIYLNEA-GERCESQFMEDRPHSKGLINRIMFTPWDDPCFITGGSDHAVVLWRDQC 473

Query:   359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKC 418
               ++WKP  LHR+LHSSAVMGV GM+    VLS G D+R +GFDA   +  FKH+++++C
Sbjct:   474 ENNAWKPTLLHRDLHSSAVMGVTGMRHNNHVLSCGDDRRFVGFDAREEKVTFKHRLDNRC 533

Query:   419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD 478
              +++PNP D NL MV T    RQLRLYD+RL QTE+ +FGWKQESSESQSALINQSWSPD
Sbjct:   534 TNIMPNPRDVNLVMVNTRQLDRQLRLYDVRLPQTELFSFGWKQESSESQSALINQSWSPD 593

Query:   479 GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH 538
             GL+I+SGSADPVIH+FDIRY+A  PS S++AH+KRVFKA WH S+PLL+SISSDL IG+H
Sbjct:   594 GLHISSGSADPVIHIFDIRYNAPSPSLSMKAHKKRVFKAEWHSSYPLLVSISSDLAIGIH 653

Query:   539 KI 540
             K+
Sbjct:   654 KL 655

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

FB|FBgn0027524 CG3909 [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 51/201 (25%), Positives = 96/201 (47%)

Query:   344 TGGSDHAVVLWSERDAEDSWKPKALHR-NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFD 402
             TGG D  V +W   D ++    K  H+   H+  V+ VA     Q + S+  D  +  +D
Sbjct:    57 TGGLDDLVKVW---DLQEDNTLKLRHKLKGHALGVVSVAVSSDGQTIASSSLDSTMCLWD 113

Query:   403 AGVGRADFKHQIES---KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459
             A  G  D KH +        +V  +PC  N +++ +G    ++ +Y +   + E      
Sbjct:   114 ARSG--DKKHLLSFGPVDLWTVQFSPC--NKYVI-SGLNDGKISMYSVETGKAE------ 162

Query:   460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVW 519
             +   +++    ++ ++SPDG YI SG+ D +I +FD+  +A K  Q++  H   V    +
Sbjct:   163 QTLDAQNGKYTLSIAYSPDGKYIASGAIDGIITIFDV--AAGKVVQTLEGHAMPVRSLCF 220

Query:   520 HYSHPLLISISSDLNIGLHKI 540
               +  LL++ S D ++ L+ +
Sbjct:   221 SPNSQLLLTASDDGHMKLYDV 241

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2043929 AT2G43770 "AT2G43770" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 51/207 (24%), Positives = 89/207 (42%)

Query:   340 PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRII 399
             P   +G  D    LW  R         A+        +  V+       + + G D  + 
Sbjct:   152 PLIISGSDDGTAKLWDMRQRG------AIQTFPDKYQITAVSFSDAADKIFTGGVDNDVK 205

Query:   400 GFDAGVGRADFK---HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE--- 453
              +D   G A      HQ     MS+ P+      +++  G   + L ++D+R    +   
Sbjct:   206 VWDLRKGEATMTLEGHQDTITGMSLSPD----GSYLLTNGMDNK-LCVWDMRPYAPQNRC 260

Query:   454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKR 513
             +  F   Q + E    L+  SWSPDG  +T+GS+D ++H++D   ++ +    +  H   
Sbjct:   261 VKIFEGHQHNFEKN--LLKCSWSPDGTKVTAGSSDRMVHIWDT--TSRRTIYKLPGHTGS 316

Query:   514 VFKAVWHYSHPLLISISSDLNIGLHKI 540
             V + V+H + P++ S SSD NI L +I
Sbjct:   317 VNECVFHPTEPIIGSCSSDKNIYLGEI 343

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q9NSS8 DKFZp434D199 "Putative uncharacterized protein DKFZp434D199" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 0.00010, P = 0.00010
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query:   470 LINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI 529
             L+  SWSPDG  I +GSAD  ++++D   ++ +    +  H   + +  +H   P++IS 
Sbjct:    58 LLRCSWSPDGSKIAAGSADRFVYVWDT--TSRRILYKLPGHAGSINEVAFHPDEPIIISA 115

Query:   530 SSDLNIGLHKI 540
             SSD  + + +I
Sbjct:   116 SSDKRLYMGEI 126

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-040426-978 snrnp40 "small nuclear ribonucleoprotein 40 (U5)" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 53/223 (23%), Positives = 94/223 (42%)

Query:   322 KPHVKGIINSIIFLPWENPCFA-TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV 380
             K H    +NS  F     P  A TG  D  V LW  R      K  ++H   ++  V+ V
Sbjct:   138 KGHTS-FVNSC-FPARRGPQLACTGSDDGTVKLWDIR------KKASVHTFQNTYQVLSV 189

Query:   381 AGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR 440
                     ++S G D  I  +D    +  +  Q     ++ L    D +  +  + +   
Sbjct:   190 TFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSADGSYLL--SNSMDN 247

Query:   441 QLRLYDIRL---RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497
              +R++DIR    ++  +  F     + E    L+  SWS DG  I +GSAD  ++++D  
Sbjct:   248 SVRVWDIRPFAPKERCVKIFQGNVHNFEKN--LLRCSWSADGSKIAAGSADRFVYIWDT- 304

Query:   498 YSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI 540
              +  +    +  H   V +  +H   P+++S SSD  + + +I
Sbjct:   305 -TTRRIVYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYIGEI 346

GO:0008150 "biological_process" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

TAIR|locus:2154438 AT5G23430 "AT5G23430" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
 Identities = 53/197 (26%), Positives = 94/197 (47%)

Query:   344 TGGSDHAVVLWSERDAEDSWKPKA-LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGF- 401
             TGG DH V LW+        KP A L    HSS +  V      +++++AGA    I   
Sbjct:    34 TGGEDHKVNLWA------IGKPNAILSLYGHSSGIDSVT-FDASEVLVAAGAASGTIKLW 86

Query:   402 ---DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458
                +A + R    H+  S C+SV  +P  F  F   +G+    L+++DIR +   IH + 
Sbjct:    87 DLEEAKIVRTLTGHR--SNCISVDFHP--FGEFFA-SGSLDTNLKIWDIRKKGC-IHTY- 139

Query:   459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAV 518
               +  +   + L    ++PDG ++ SG  D ++ ++D+  +A K     ++H+ ++    
Sbjct:   140 --KGHTRGVNVL---RFTPDGRWVVSGGEDNIVKVWDL--TAGKLLTEFKSHEGQIQSLD 192

Query:   519 WHYSHPLLISISSDLNI 535
             +H    LL + S+D  +
Sbjct:   193 FHPHEFLLATGSADRTV 209

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2150788 AT5G08390 "AT5G08390" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
 Identities = 56/196 (28%), Positives = 92/196 (46%)

Query:   344 TGGSDHAVVLWSERDAEDSWKPKA-LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFD 402
             TGG DH V LW+        KP A L    HSS +  V     + +V +  A   I  +D
Sbjct:    34 TGGEDHKVNLWA------IGKPNAILSLYGHSSGIDSVTFDASEGLVAAGAASGTIKLWD 87

Query:   403 ---AGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW 459
                A V R    H+  S C+SV  +P  F  F   +G+    L+++DIR +   IH +  
Sbjct:    88 LEEAKVVRTLTGHR--SNCVSVNFHP--FGEFFA-SGSLDTNLKIWDIRKKGC-IHTY-- 139

Query:   460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVW 519
              +  +   + L    ++PDG +I SG  D V+ ++D+  +A K     ++H+ ++    +
Sbjct:   140 -KGHTRGVNVL---RFTPDGRWIVSGGEDNVVKVWDL--TAGKLLHEFKSHEGKIQSLDF 193

Query:   520 HYSHPLLISISSDLNI 535
             H    LL + S+D  +
Sbjct:   194 HPHEFLLATGSADKTV 209

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0271788 wdr57 "putative U5 small nuclear ribonucleoprotein" [Dictyostelium discoideum (taxid:44689)]

 Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
 Identities = 59/265 (22%), Positives = 104/265 (39%)

Query:   279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE 338
             ++ W    N +++A T    D  I V + NK  G         + H  G++NS       
Sbjct:   110 ELHWSTDSNEIYTACT----DKSIGVWDSNK--GELIKRI---REH-SGVVNSCCPARRG 159

Query:   339 NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRI 398
              P  A+G  D +  ++  R    +      H   H   V  V        +++ G D  I
Sbjct:   160 PPLVASGSDDRSARIFDTRSKGST------HLFQHKYPVTSVCFSDASDQLITGGIDNVI 213

Query:   399 IGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR---QTEIH 455
               +D    + D  + + S   ++       +   + + +     +++DIR        I 
Sbjct:   214 RVWDIR-NQEDPLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIK 272

Query:   456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF 515
              F   Q + E    LI  SWS DG  I  GS+D  ++++D   +  +    +  H   V 
Sbjct:   273 TFNGAQNNFEKN--LIKSSWSIDGRRIGCGSSDRQVYIWDT--NTKQLQYCLPGHSGTVN 328

Query:   516 KAVWHYSHPLLISISSDLNIGLHKI 540
             +  +H + P++ S SSD  I L +I
Sbjct:   329 EVTFHPNEPIIASCSSDKTIYLGEI 353

GO:0005681 "spliceosomal complex" evidence=IEA;ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q96DI7 SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
 Identities = 44/200 (22%), Positives = 87/200 (43%)

Query:   344 TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA 403
             TG  D  V LW  R      K  A+    ++  V+ V        ++S G D  I  +D 
Sbjct:   169 TGSDDGTVKLWDIR------KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 222

Query:   404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL---RQTEIHAFGWK 460
                +  +  +  +  ++ L    + +  +  +      +R++D+R    ++  +  F   
Sbjct:   223 RQNKLTYTMRGHADSVTGLSLSSEGSYLL--SNAMDNTVRVWDVRPFAPKERCVKIFQGN 280

Query:   461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520
               + E    L+  SWSPDG  I +GSAD  ++++D   ++ +    +  H   + +  +H
Sbjct:   281 VHNFEKN--LLRCSWSPDGSKIAAGSADRFVYVWDT--TSRRILYKLPGHAGSINEVAFH 336

Query:   521 YSHPLLISISSDLNIGLHKI 540
                P++IS SSD  + + +I
Sbjct:   337 PDEPIIISASSDKRLYMGEI 356

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=NAS

GO:0000375 "RNA splicing, via transesterification reactions" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005682 "U5 snRNP" evidence=TAS

GO:0006396 "RNA processing" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	540
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 65/317 (20%), Positives = 115/317 (36%), Gaps = 42/317 (13%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281
           H   +  ++ +P  + L  T + DG I++W L++       L  T      H     D+A
Sbjct: 8   HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETG-----ELLRTLKG---HTGPVRDVA 58

Query: 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC 341
               G  L S     S D  I + +L    G    T      +V    +S+ F P +   
Sbjct: 59  ASADGTYLASG----SSDKTIRLWDLET--GECVRTLTGHTSYV----SSVAFSP-DGRI 107

Query: 342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK--RII 399
            ++   D  + +W     +       L    H+  V  VA       V S+  D   ++ 
Sbjct: 108 LSSSSRDKTIKVWDVETGKCL---TTL--RGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 400 GFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458
               G   A    H  E   ++  P+     L    + +    ++L+D+   +       
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPD--GEKLL---SSSSDGTIKLWDLSTGK------- 210

Query: 459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAV 518
                   ++ + + ++SPDG  + SGS D  I ++D+R    +  Q++  H   V    
Sbjct: 211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR--TGECVQTLSGHTNSVTSLA 268

Query: 519 WHYSHPLLISISSDLNI 535
           W      L S S+D  I
Sbjct: 269 WSPDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.4 bits (194), Expect = 9e-16
 Identities = 75/326 (23%), Positives = 132/326 (40%), Gaps = 41/326 (12%)

Query: 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRW 276
                H   + SL+ +P  + L   S+LDG I+LW L++    ++L          H   
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL--------AGHTDP 200

Query: 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP 336
              +A+ P G  L ++    S D  I + +L+  K    +       H   +++S     
Sbjct: 201 VSSLAFSPDGGLLIASG---SSDGTIRLWDLSTGK----LLRSTLSGHSDSVVSS---FS 250

Query: 337 WENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK 396
            +    A+G SD  + LW  R +    +      + HSS+V+ VA     +++ S  +D 
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLR----TLSGHSSSVLSVAFSPDGKLLASGSSDG 306

Query: 397 RIIGFDAGVGR-----ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451
            +  +D   G+         H+     +S  P+           G+    +RL+D+R  +
Sbjct: 307 TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS----GGSDDGTIRLWDLRTGK 362

Query: 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ 511
                 G         S +++ S+SPDG  ++SGS D  + L+D+  S     +++  H 
Sbjct: 363 PLKTLEG--------HSNVLSVSFSPDGRVVSSGSTDGTVRLWDL--STGSLLRNLDGHT 412

Query: 512 KRVFKAVWHYSHPLLISISSDLNIGL 537
            RV    +      L S SSD  I L
Sbjct: 413 SRVTSLDFSPDGKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 70.1 bits (170), Expect = 9e-13
 Identities = 65/282 (23%), Positives = 106/282 (37%), Gaps = 32/282 (11%)

Query: 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRW 276
              + H   + SL+ +P    L  + + DG IRLW L +     S LS        H   
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-------GHSDS 244

Query: 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP 336
               ++ P G+ L S     S D  I + +L  +                  + S+ F P
Sbjct: 245 V-VSSFSPDGSLLASG----SSDGTIRLWDLRSSSSLLRTLSGHSSS-----VLSVAFSP 294

Query: 337 WENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG-MQQKQIVLSAGAD 395
                 A+G SD  V LW   D E      +L    H   V  ++       +V     D
Sbjct: 295 DGK-LLASGSSDGTVRLW---DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350

Query: 396 KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH 455
             I  +D   G+     +  S  +SV  +P   +  +V +G+    +RL+D+        
Sbjct: 351 GTIRLWDLRTGKPLKTLEGHSNVLSVSFSP---DGRVVSSGSTDGTVRLWDLS------- 400

Query: 456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR 497
                +      S + +  +SPDG  + SGS+D  I L+D++
Sbjct: 401 TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 57/274 (20%), Positives = 95/274 (34%), Gaps = 76/274 (27%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281
           H   + S++ +P + ++  +S+ D  I++W +++     +L          H  W   +A
Sbjct: 92  HTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRG--------HTDWVNSVA 142

Query: 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC 341
           + P G  + S+    S D  I + +L   K   CV  L    H  G +NS+ F P +   
Sbjct: 143 FSPDGTFVASS----SQDGTIKLWDLRTGK---CVATLTG--H-TGEVNSVAFSP-DGEK 191

Query: 342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGF 401
             +  SD  + LW       + K     R  H + V  VA      ++ S   D  I  +
Sbjct: 192 LLSSSSDGTIKLWDLS----TGKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Query: 402 DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ 461
           D   G           C+  L                               + +     
Sbjct: 247 DLRTGE----------CVQTLSGH-------------------------TNSVTSL---- 267

Query: 462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495
                       +WSPDG  + SGSAD  I ++D
Sbjct: 268 ------------AWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.3 bits (147), Expect = 5e-10
 Identities = 67/319 (21%), Positives = 121/319 (37%), Gaps = 35/319 (10%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281
           H+  + S++ +P + +L ++ + DG I+LW L +             L   H      +A
Sbjct: 64  HEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEK------LIKSLEGLHDSSVSKLA 116

Query: 282 W-HPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP 340
              P GNS+  A    S     +V   + +     +  L+        + S+ F P    
Sbjct: 117 LSSPDGNSILLA----SSSLDGTVKLWDLSTPGKLIRTLEGHSE---SVTSLAFSPDGKL 169

Query: 341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRII 399
             +    D  + LW  R    + KP +     H+  V  +A       ++ S  +D  I 
Sbjct: 170 LASGSSLDGTIKLWDLR----TGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Query: 400 GFDAGVG---RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456
            +D   G   R+      +S   S  P+          +G+    +RL+D+R   + +  
Sbjct: 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLA-----SGSSDGTIRLWDLRSSSSLLRT 279

Query: 457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFK 516
                 S  S +      +SPDG  + SGS+D  + L+D+       S +++ H+  V  
Sbjct: 280 LSGHSSSVLSVA------FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333

Query: 517 AVWHYSHPLLISISSDLNI 535
             +     LL+S  SD   
Sbjct: 334 LSFSPDGSLLVSGGSDDGT 352

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 55/268 (20%), Positives = 87/268 (32%), Gaps = 75/268 (27%)

Query: 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSI 332
           H      +A+ P G  L +     SGD  I V +L        +  L  K H  G +  +
Sbjct: 8   HTGGVTCVAFSPDGKLLATG----SGDGTIKVWDLE---TGELLRTL--KGH-TGPVRDV 57

Query: 333 IFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL--HSSAVMGVAGMQQKQIVL 390
                     A+G SD  + LW     E         R L  H+S V  VA     +I+ 
Sbjct: 58  AASAD-GTYLASGSSDKTIRLWDLETGE-------CVRTLTGHTSYVSSVAFSPDGRILS 109

Query: 391 SAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR 450
           S                 D                              + ++++D+   
Sbjct: 110 S--------------SSRD------------------------------KTIKVWDVETG 125

Query: 451 QTEIHAFGWKQESSESQSALINQ-SWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA 509
           +  +             +  +N  ++SPDG ++ S S D  I L+D+R    K   ++  
Sbjct: 126 K-CLTTL-------RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT--GKCVATLTG 175

Query: 510 HQKRVFKAVWHYSHPLLISISSDLNIGL 537
           H   V    +      L+S SSD  I L
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKL 203

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.5 bits (93), Expect = 0.002
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 13/185 (7%)

Query: 361 DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMS 420
                 +L    H  ++  +A     +++LS  +D  I  +D   G    K        S
Sbjct: 52  SLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111

Query: 421 VLPNPC---DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP 477
           V        D N  ++ + +    ++L+D+      I              ++ + ++SP
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL------EGHSESVTSLAFSP 165

Query: 478 DGLYITSGS-ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLI-SISSDLNI 535
           DG  + SGS  D  I L+D+R    KP  ++  H   V    +     LLI S SSD  I
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTG--KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223

Query: 536 GLHKI 540
            L  +
Sbjct: 224 RLWDL 228

Length = 466

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 1   MSELIVKKPKQEEEEEEENGGCNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEA 60
           + EL     + EE +EE            E L  L E   +E+  L   ++  +++LEE 
Sbjct: 346 LEELEQLLAELEEAKEELE---EKLSALLEELEELFEALREELAELEAELAEIRNELEEL 402

Query: 61  EKRLEDSQSKLARLR 75
           ++ +E  + +L RL 
Sbjct: 403 KREIESLEERLERLS 417

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	540
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.93
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG4227	609	consensus WD40 repeat protein [General function pr	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.89
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
PRK11028	330	6-phosphogluconolactonase; Provisional	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG1334	559	consensus WD40 repeat protein [General function pr	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.81
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.75
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.7
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.7
KOG2139	445	consensus WD40 repeat protein [General function pr	99.7
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.69
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.69
PRK03629	429	tolB translocation protein TolB; Provisional	99.69
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.68
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.68
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.68
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.65
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.65
PRK05137	435	tolB translocation protein TolB; Provisional	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.62
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.62
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.58
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.58
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.57
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.56
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.55
KOG2321	703	consensus WD40 repeat protein [General function pr	99.54
KOG2315	566	consensus Predicted translation initiation factor	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.52
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.49
PRK00178	430	tolB translocation protein TolB; Provisional	99.49
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.48
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.46
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.46
PRK04792	448	tolB translocation protein TolB; Provisional	99.46
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.45
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.44
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.43
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.43
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.42
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.41
KOG2314	698	consensus Translation initiation factor 3, subunit	99.4
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.4
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.39
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.39
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.36
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.35
KOG2315	566	consensus Predicted translation initiation factor	99.35
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.3
KOG4547	541	consensus WD40 repeat-containing protein [General	99.3
PRK01029	428	tolB translocation protein TolB; Provisional	99.29
PRK01029	428	tolB translocation protein TolB; Provisional	99.28
PRK04792	448	tolB translocation protein TolB; Provisional	99.27
KOG2314	698	consensus Translation initiation factor 3, subunit	99.26
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.25
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.21
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.21
COG4946	668	Uncharacterized protein related to the periplasmic	99.2
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.19
KOG4547	541	consensus WD40 repeat-containing protein [General	99.19
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.18
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.16
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.16
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.15
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.15
COG4946	668	Uncharacterized protein related to the periplasmic	99.13
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.11
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.07
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.05
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.05
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.04
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.01
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.0
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.0
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.97
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.96
PRK04043	419	tolB translocation protein TolB; Provisional	98.96
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.95
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.92
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.92
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.87
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.87
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.86
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.86
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.83
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.79
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.72
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.71
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.67
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.66
KOG2695	425	consensus WD40 repeat protein [General function pr	98.65
KOG3621	726	consensus WD40 repeat-containing protein [General	98.64
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.63
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.63
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.6
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.6
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.6
KOG2695	425	consensus WD40 repeat protein [General function pr	98.58
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.56
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.52
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.49
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.47
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.47
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.47
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.46
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.44
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.44
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.39
PRK02888	635	nitrous-oxide reductase; Validated	98.39
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.34
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.33
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.32
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.28
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.22
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.15
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.13
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.13
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.0
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.96
PRK02888	635	nitrous-oxide reductase; Validated	97.94
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.94
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.92
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.92
KOG3621	726	consensus WD40 repeat-containing protein [General	97.9
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.84
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.83
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.81
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.79
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.79
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.74
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.69
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.66
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.66
COG3391	381	Uncharacterized conserved protein [Function unknow	97.64
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.58
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.57
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.56
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.53
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.52
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.5
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.49
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.48
KOG2444	238	consensus WD40 repeat protein [General function pr	97.48
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.46
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.43
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.41
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.4
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.39
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.38
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.31
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.29
COG3391	381	Uncharacterized conserved protein [Function unknow	97.29
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.28
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.28
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.27
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.24
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.23
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.22
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.19
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.15
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.13
PRK13616	591	lipoprotein LpqB; Provisional	97.11
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	97.11
PHA02713	557	hypothetical protein; Provisional	97.02
PRK13616	591	lipoprotein LpqB; Provisional	97.01
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.0
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.96
KOG2395	644	consensus Protein involved in vacuole import and d	96.93
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.92
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.84
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.76
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.73
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.72
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.68
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.66
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.59
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.57
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.56
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.55
PHA02713	557	hypothetical protein; Provisional	96.54
KOG2395	644	consensus Protein involved in vacuole import and d	96.52
COG5276	370	Uncharacterized conserved protein [Function unknow	96.43
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.41
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.33
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.99
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.97
KOG2444	238	consensus WD40 repeat protein [General function pr	95.85
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.84
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.84
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.79
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.61
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.41
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.27
PHA03098	534	kelch-like protein; Provisional	95.26
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.1
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.09
PRK10115	686	protease 2; Provisional	94.96
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.93
PHA03098	534	kelch-like protein; Provisional	94.91
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.76
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.7
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.65
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.55
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.53
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.47
KOG2247	615	consensus WD40 repeat-containing protein [General	94.33
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.31
PRK04406	75	hypothetical protein; Provisional	94.29
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.23
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.19
PRK02793	72	phi X174 lysis protein; Provisional	94.15
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.09
PHA02790	480	Kelch-like protein; Provisional	94.02
PRK00736	68	hypothetical protein; Provisional	93.9
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.88
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.88
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.69
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.51
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.46
PRK02119	73	hypothetical protein; Provisional	93.44
PRK00295	68	hypothetical protein; Provisional	93.27
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.22
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	92.98
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.96
PRK04325	74	hypothetical protein; Provisional	92.39
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.2
PRK00846	77	hypothetical protein; Provisional	92.03
COG5167	776	VID27 Protein involved in vacuole import and degra	91.93
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.75
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.75
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.61
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.55
PF13449	326	Phytase-like: Esterase-like activity of phytase	91.45
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.43
PLN02153	341	epithiospecifier protein	91.29
COG5276	370	Uncharacterized conserved protein [Function unknow	91.19
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.14
PHA02790	480	Kelch-like protein; Provisional	90.97
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.79
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.72
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.45
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	89.71
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.57
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	89.48
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	89.43
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.22
KOG2247	615	consensus WD40 repeat-containing protein [General	89.05
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.57
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.35
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.3
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.86
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	87.5
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.38
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	87.37
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.34
COG5167	776	VID27 Protein involved in vacuole import and degra	87.12
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.07
PRK10115	686	protease 2; Provisional	86.9
COG4590	733	ABC-type uncharacterized transport system, permeas	86.74
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	86.6
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.56
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	86.49
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	86.32
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.09
PRK13684	334	Ycf48-like protein; Provisional	85.89
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.82
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.47
PF14193	83	DUF4315: Domain of unknown function (DUF4315)	85.46
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.39
KOG2006	1023	consensus WD40 repeat protein [General function pr	85.36
COG1520	370	FOG: WD40-like repeat [Function unknown]	85.1
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.07
PRK00846	77	hypothetical protein; Provisional	84.42
PRK14127	109	cell division protein GpsB; Provisional	84.31
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	84.02
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	83.93
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.82
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.17
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	83.17
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.16

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-52  Score=363.25  Aligned_cols=326  Identities=19%  Similarity=0.277  Sum_probs=285.3

Q ss_pred             CCeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcc
Q 009203          146 GSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSS  220 (540)
Q Consensus       146 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~  220 (540)
                      .+...++||..+|.++.+.|...                               .+++++.|.++++||..     .+.+
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~-------------------------------~l~tGsGD~TvR~WD~~TeTp~~t~K  154 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGS-------------------------------RLVTGSGDTTVRLWDLDTETPLFTCK  154 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCc-------------------------------eEEecCCCceEEeeccCCCCcceeec
Confidence            34456789999999999999743                               58999999999999876     5689


Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-----CCCeEEEEeec
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-----QGNSLFSAHTA  295 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-----~~~~l~s~~~~  295 (540)
                      ||...|.|++|+|| |..||+|+.||+|++||..+++.+....       .+|..+|++++|.|     ..++|+++   
T Consensus       155 gH~~WVlcvawsPD-gk~iASG~~dg~I~lwdpktg~~~g~~l-------~gH~K~It~Lawep~hl~p~~r~las~---  223 (480)
T KOG0271|consen  155 GHKNWVLCVAWSPD-GKKIASGSKDGSIRLWDPKTGQQIGRAL-------RGHKKWITALAWEPLHLVPPCRRLASS---  223 (480)
T ss_pred             CCccEEEEEEECCC-cchhhccccCCeEEEecCCCCCcccccc-------cCcccceeEEeecccccCCCccceecc---
Confidence            99999999999997 9999999999999999999988655443       69999999999976     56799999   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                       +.||.|+|||+..+   .++..+.+   |..+|+|+.|-  ...+|++|+.|++|++|+...|.+   ...+  .+|..
T Consensus       224 -skDg~vrIWd~~~~---~~~~~lsg---HT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~---~r~l--kGHah  289 (480)
T KOG0271|consen  224 -SKDGSVRIWDTKLG---TCVRTLSG---HTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKL---CREL--KGHAH  289 (480)
T ss_pred             -cCCCCEEEEEccCc---eEEEEecc---CccceEEEEEc--CCceEEecCCCceEEEEEccchhH---HHhh--cccch
Confidence             99999999999975   66777776   78899999996  456999999999999999999876   3444  56999


Q ss_pred             ceeEEEec-----------cCC-------------------------CEEEEEeCCCeEEEEECCCCC-eee-eeccCcc
Q 009203          376 AVMGVAGM-----------QQK-------------------------QIVLSAGADKRIIGFDAGVGR-ADF-KHQIESK  417 (540)
Q Consensus       376 ~v~~l~~s-----------~~~-------------------------~~l~~~~~dg~i~iwd~~~~~-~~~-~~~~~~~  417 (540)
                      .|+.++.+           |.+                         ..+++|+.|.++.+|+....+ ++. ...+..-
T Consensus       290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l  369 (480)
T KOG0271|consen  290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL  369 (480)
T ss_pred             heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh
Confidence            99999876           223                         359999999999999987654 333 3556677


Q ss_pred             EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      +..+.|+|++   +++++++.|..|++||.++++...       .+.+|-..|..++|+.|.++|++|+.|.++++|+++
T Consensus       370 Vn~V~fSPd~---r~IASaSFDkSVkLW~g~tGk~la-------sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  370 VNHVSFSPDG---RYIASASFDKSVKLWDGRTGKFLA-------SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             eeeEEECCCc---cEEEEeecccceeeeeCCCcchhh-------hhhhccceeEEEEeccCccEEEEcCCCceEEEEEee
Confidence            8899999998   899999999999999999998543       678999999999999999999999999999999999


Q ss_pred             CCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          498 YSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       498 ~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      +  .+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus       440 t--kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  440 T--KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             e--eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            8  788889999999999999999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-48  Score=343.46  Aligned_cols=291  Identities=22%  Similarity=0.289  Sum_probs=248.8

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+.||.++|.|++|+|+ |..|++|+.|.++|+||+.+.....+.        .+|..+|.|++|+|||+.||+|    +
T Consensus       110 S~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~~TeTp~~t~--------KgH~~WVlcvawsPDgk~iASG----~  176 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDLDTETPLFTC--------KGHKNWVLCVAWSPDGKKIASG----S  176 (480)
T ss_pred             ccCCCCCcEEEEEecCC-CceEEecCCCceEEeeccCCCCcceee--------cCCccEEEEEEECCCcchhhcc----c
Confidence            47899999999999996 999999999999999999998776666        6999999999999999999999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC----CCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW----ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH  373 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  373 (540)
                      .||.|++||..++  ......+.+   |+..|++++|.|-    ...+|++++.||.|+|||+..+.+     .+...+|
T Consensus       177 ~dg~I~lwdpktg--~~~g~~l~g---H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-----~~~lsgH  246 (480)
T KOG0271|consen  177 KDGSIRLWDPKTG--QQIGRALRG---HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-----VRTLSGH  246 (480)
T ss_pred             cCCeEEEecCCCC--CcccccccC---cccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-----EEEeccC
Confidence            9999999999988  344455554   7888999999763    467899999999999999999875     3334679


Q ss_pred             CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeec-----------CCCC-------------
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPN-----------PCDF-------------  428 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~-------------  428 (540)
                      +.+|+|+.|-- ..+|++|+.|++|++|+...|.+...... ...+..++.+           |.+.             
T Consensus       247 T~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al  325 (480)
T KOG0271|consen  247 TASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL  325 (480)
T ss_pred             ccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence            99999999973 46899999999999999999887554332 3344444443           2221             


Q ss_pred             ---------CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203          429 ---------NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS  499 (540)
Q Consensus       429 ---------~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~  499 (540)
                               .+..+++|+.|.++.+|+......++.      ...+|..-|+.+.||||++++|+++.|..|++||..+ 
T Consensus       326 ~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~------rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-  398 (480)
T KOG0271|consen  326 ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT------RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-  398 (480)
T ss_pred             HHHHHhhccCcceeEEecCCceEEEecccccccchh------hhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-
Confidence                     113699999999999999876554332      5578999999999999999999999999999999998 


Q ss_pred             CCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          500 ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       500 ~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                       ++.+.+|++|-+.|+.++|+.|.++|++||.|.+++||++
T Consensus       399 -Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  399 -GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             -cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence             8999999999999999999999999999999999999985

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5e-47  Score=337.32  Aligned_cols=283  Identities=19%  Similarity=0.298  Sum_probs=257.3

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC--CCeEEEEeecCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTADS  297 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~~~  297 (540)
                      .|-+.+|..+.|++| +.+||||+.+|.++||+......+.++        .||...|.++.|+|.  +..|++|    +
T Consensus       172 ~gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~~~~~~~~~l--------~gH~~~v~~~~fhP~~~~~~lat~----s  238 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRD-SKHLATGSWSGLVKVWSVPQCNLLQTL--------RGHTSRVGAAVFHPVDSDLNLATA----S  238 (459)
T ss_pred             ccCCCcceeeEeecC-CCeEEEeecCCceeEeecCCcceeEEE--------eccccceeeEEEccCCCccceeee----c
Confidence            467789999999996 999999999999999999998777776        699999999999997  5689999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .||++++|++.+.   ..+..+.+   |...|..++|+| +|++|+|++.|.+-++||++++..     .+...+|...|
T Consensus       239 ~Dgtvklw~~~~e---~~l~~l~g---H~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~E-----lL~QEGHs~~v  306 (459)
T KOG0272|consen  239 ADGTVKLWKLSQE---TPLQDLEG---HLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSE-----LLLQEGHSKGV  306 (459)
T ss_pred             cCCceeeeccCCC---cchhhhhc---chhhheeeeecC-CCceeeecccccchhhcccccchh-----hHhhccccccc
Confidence            9999999999874   44666665   678899999999 999999999999999999999873     45558899999


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      .+++|.+||.++++|+.|..-+|||+++|.++.... +-..+.++.|+|.+   +.|++|+.|++++|||++......  
T Consensus       307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG---y~lATgs~Dnt~kVWDLR~r~~ly--  381 (459)
T KOG0272|consen  307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG---YHLATGSSDNTCKVWDLRMRSELY--  381 (459)
T ss_pred             ceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc---eEEeecCCCCcEEEeeecccccce--
Confidence            999999999999999999999999999999987754 45778999999988   799999999999999999777522  


Q ss_pred             eccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203          457 FGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI  535 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v  535 (540)
                           .+.+|.+-|+.|.|+| .|.+|++++.|++++||...+  ..++.++.||.+.|.++++++|+++++|++.|+++
T Consensus       382 -----~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  382 -----TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             -----ecccccchhhheEecccCCeEEEEcccCcceeeecCCC--cccchhhcCCccceEEEEeccCCceEEEeccCcee
Confidence                 5678999999999999 789999999999999999998  89999999999999999999999999999999999


Q ss_pred             EEEe
Q 009203          536 GLHK  539 (540)
Q Consensus       536 ~iw~  539 (540)
                      ++|.
T Consensus       455 KLW~  458 (459)
T KOG0272|consen  455 KLWR  458 (459)
T ss_pred             eecc
Confidence            9995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.7e-45  Score=309.43  Aligned_cols=293  Identities=19%  Similarity=0.235  Sum_probs=254.5

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      .+|+||.+.|.++.|++| +++|++++.||.+.|||.-+......+        +-...+|..++|+|.|+++|.|    
T Consensus        49 r~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~hai--------pl~s~WVMtCA~sPSg~~VAcG----  115 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHAI--------PLPSSWVMTCAYSPSGNFVACG----  115 (343)
T ss_pred             EEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeEE--------ecCceeEEEEEECCCCCeEEec----
Confidence            457899999999999997 999999999999999999887766555        3456889999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|+...||++.+......+........|.+.+.|+.|.+  ...|+|++.|.+..+||+++++.     .....+|.+.
T Consensus       116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~-----~~~f~GH~gD  188 (343)
T KOG0286|consen  116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQ-----TQVFHGHTGD  188 (343)
T ss_pred             CcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceE-----EEEecCCccc
Confidence            9999999999986543333333333445889999999986  45788999999999999999974     4444689999


Q ss_pred             eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      |.++.++| +++.+++|+-|+..++||++.+.+.+.+ .++..+.++.|.|++   .-+++|+.|++.++||++..+...
T Consensus       189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G---~afatGSDD~tcRlyDlRaD~~~a  265 (343)
T KOG0286|consen  189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG---DAFATGSDDATCRLYDLRADQELA  265 (343)
T ss_pred             EEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCC---CeeeecCCCceeEEEeecCCcEEe
Confidence            99999999 9999999999999999999999988774 567889999999998   689999999999999999876544


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCc
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLN  534 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~  534 (540)
                      ..     .......+|++++||..|++|++|..|..+.+||.-.  ++.+..+.+|.+.|.++..+|||..|+|||.|.+
T Consensus       266 ~y-----s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk--~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~  338 (343)
T KOG0286|consen  266 VY-----SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK--GERVGVLAGHENRVSCLGVSPDGMAVATGSWDST  338 (343)
T ss_pred             ee-----ccCcccCCceeEEEcccccEEEeeecCCceeEeeccc--cceEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence            32     1233456899999999999999999999999999987  7888899999999999999999999999999999


Q ss_pred             EEEEe
Q 009203          535 IGLHK  539 (540)
Q Consensus       535 v~iw~  539 (540)
                      ++||.
T Consensus       339 lriW~  343 (343)
T KOG0286|consen  339 LRIWA  343 (343)
T ss_pred             eeecC
Confidence            99994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.1e-44  Score=328.89  Aligned_cols=366  Identities=19%  Similarity=0.271  Sum_probs=299.2

Q ss_pred             CCCCCCCCeeeecCCcceeeEEEEcccccccC---CCCccEEEEeecCCCceEEe--cccccccceEEecC---------
Q 009203          140 GAKDPSGSSTQASPAAHSIGIVKVKGEKSHRN---SSDSEIVEVRDRGTKRKFEQ--KEHRELIPLVRTSA---------  205 (540)
Q Consensus       140 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~---------  205 (540)
                      |...+..+..++.||+..|++|+++|.||||+   ++|..+.  ||+|+||+|..  +.|..||+++++++         
T Consensus       132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~--ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g  209 (603)
T KOG0318|consen  132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVA--FFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG  209 (603)
T ss_pred             EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEE--EeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence            66778889999999999999999999999999   8899988  99999999876  69999999988765         


Q ss_pred             CCCeEEEeccc-----hhcc---cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc
Q 009203          206 SPATIHCHTSN-----HVSS---LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP  277 (540)
Q Consensus       206 ~d~~i~~~~~~-----~~~~---~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V  277 (540)
                      .|+++.+||+.     ..+.   +|++.|.+|+|+|| +..++|++.|.+++|||+.+..++.++.....     -.+.-
T Consensus       210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~-----v~dqq  283 (603)
T KOG0318|consen  210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVSTNSLVSTWPMGST-----VEDQQ  283 (603)
T ss_pred             CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC-CceEEEecCCceEEEEEeeccceEEEeecCCc-----hhceE
Confidence            48999999886     2244   99999999999997 89999999999999999999988877754322     12334


Q ss_pred             eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC
Q 009203          278 EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER  357 (540)
Q Consensus       278 ~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  357 (540)
                      ..+-|-  +..|++.    +.+|.|.+++...+   .....+.+   |...|+++..+| ++.+|++|+.||.|.-||..
T Consensus       284 vG~lWq--kd~lItV----Sl~G~in~ln~~d~---~~~~~i~G---HnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~  350 (603)
T KOG0318|consen  284 VGCLWQ--KDHLITV----SLSGTINYLNPSDP---SVLKVISG---HNKSITALTVSP-DGKTIYSGSYDGHINSWDSG  350 (603)
T ss_pred             EEEEEe--CCeEEEE----EcCcEEEEecccCC---Chhheecc---cccceeEEEEcC-CCCEEEeeccCceEEEEecC
Confidence            456675  5678888    89999999999876   35666665   667799999999 99999999999999999999


Q ss_pred             CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee---------------------------
Q 009203          358 DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF---------------------------  410 (540)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------------------  410 (540)
                      ++..    ..+...+|...|.+++-+.. ..+++++.|.++++.++..+....                           
T Consensus       351 ~g~~----~~~~g~~h~nqI~~~~~~~~-~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~  425 (603)
T KOG0318|consen  351 SGTS----DRLAGKGHTNQIKGMAASES-GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI  425 (603)
T ss_pred             Cccc----cccccccccceEEEEeecCC-CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEec
Confidence            9874    44444679999999998754 456778888899999774321100                           


Q ss_pred             -------------eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203          411 -------------KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP  477 (540)
Q Consensus       411 -------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  477 (540)
                                   .....-...+++.+|++   ..++.|+.|+.|++|.+......-.     .....|.++|++++|||
T Consensus       426 ~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~---~~vaVGG~Dgkvhvysl~g~~l~ee-----~~~~~h~a~iT~vaySp  497 (603)
T KOG0318|consen  426 SDIVLLQDQTKVSSIPIGYESSAVAVSPDG---SEVAVGGQDGKVHVYSLSGDELKEE-----AKLLEHRAAITDVAYSP  497 (603)
T ss_pred             CcEEEEecCCcceeeccccccceEEEcCCC---CEEEEecccceEEEEEecCCcccce-----eeeecccCCceEEEECC
Confidence                         00012233456667766   6899999999999999987653211     13457999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          478 DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       478 ~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |+.|||+|...+.+.+||+.+.+ .....+..|.+.|.+++|+|+..++|||+.|-+|.||++
T Consensus       498 d~~yla~~Da~rkvv~yd~~s~~-~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  498 DGAYLAAGDASRKVVLYDVASRE-VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV  559 (603)
T ss_pred             CCcEEEEeccCCcEEEEEcccCc-eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence            99999999999999999999842 245566779999999999999999999999999999985

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.2e-43  Score=311.74  Aligned_cols=263  Identities=19%  Similarity=0.264  Sum_probs=233.3

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      .+++++=++.+++|+..     ++|.||++.|.++.|+|. ++..||||+.||+|++|++.....+..+        .||
T Consensus       189 ~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l--------~gH  260 (459)
T KOG0272|consen  189 HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL--------EGH  260 (459)
T ss_pred             eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh--------hcc
Confidence            57888899999999654     679999999999999996 4778999999999999999987776666        699


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      ...|..++|+|+|++|+++    +.|.+-++||+.++.   .+...++   |...|.+++|+| +|.+++||+.|..-+|
T Consensus       261 ~~RVs~VafHPsG~~L~Ta----sfD~tWRlWD~~tk~---ElL~QEG---Hs~~v~~iaf~~-DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  261 LARVSRVAFHPSGKFLGTA----SFDSTWRLWDLETKS---ELLLQEG---HSKGVFSIAFQP-DGSLAATGGLDSLGRV  329 (459)
T ss_pred             hhhheeeeecCCCceeeec----ccccchhhcccccch---hhHhhcc---cccccceeEecC-CCceeeccCccchhhe
Confidence            9999999999999999999    999999999999862   2333443   677899999999 9999999999999999


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceE
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  432 (540)
                      ||++++.+     .+...+|...|.+++|+|+|..|++|+.|++++|||++....++..... .-+..+.|.|..  +.+
T Consensus       330 WDlRtgr~-----im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~--g~f  402 (459)
T KOG0272|consen  330 WDLRTGRC-----IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE--GYF  402 (459)
T ss_pred             eecccCcE-----EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC--CeE
Confidence            99999985     4555779999999999999999999999999999999988887775544 556678999832  379


Q ss_pred             EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      |++++.|++++||...+..+..       .+.||.+.|.++.+++|+.++++++.|.++++|.
T Consensus       403 L~TasyD~t~kiWs~~~~~~~k-------sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  403 LVTASYDNTVKIWSTRTWSPLK-------SLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEEcccCcceeeecCCCcccch-------hhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999888643       6789999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.2e-40  Score=278.83  Aligned_cols=287  Identities=14%  Similarity=0.194  Sum_probs=245.4

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccccc
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHK  223 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~  223 (540)
                      +.+.||..+|.++.+.+.+.                               .+.+++.|+.+.+||..     +.+.-..
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr-------------------------------~ivSaSqDGklIvWDs~TtnK~haipl~s   97 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSR-------------------------------RIVSASQDGKLIVWDSFTTNKVHAIPLPS   97 (343)
T ss_pred             EEecccccceeeeEecCCcC-------------------------------eEEeeccCCeEEEEEcccccceeEEecCc
Confidence            45679999999999988752                               57899999999999765     4466667


Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ..|..++|+| +|+++|+|+.|+...||++.+.+.........  ...+|.+.+.|+.|.+| ..|+++    +.|.+..
T Consensus        98 ~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r--~l~gHtgylScC~f~dD-~~ilT~----SGD~TCa  169 (343)
T KOG0286|consen   98 SWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSR--ELAGHTGYLSCCRFLDD-NHILTG----SGDMTCA  169 (343)
T ss_pred             eeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeee--eecCccceeEEEEEcCC-CceEec----CCCceEE
Confidence            8999999999 69999999999999999998663221111111  11699999999999885 577888    9999999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      +||++++   +.+..+.+   |.+.|.+++++|.+++.+++|+.|+..++||++.+.+   .+.+  .+|...|+++.|.
T Consensus       170 lWDie~g---~~~~~f~G---H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---~qtF--~ghesDINsv~ff  238 (343)
T KOG0286|consen  170 LWDIETG---QQTQVFHG---HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---VQTF--EGHESDINSVRFF  238 (343)
T ss_pred             EEEcccc---eEEEEecC---CcccEEEEecCCCCCCeEEecccccceeeeeccCcce---eEee--cccccccceEEEc
Confidence            9999998   55677775   7888999999998999999999999999999999986   4444  5699999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          384 QQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      |+|.-+++|+.|+++++||++..+.+..+...   ..+.++.|+-++   ++|++|..|.++.+||.-.++...      
T Consensus       239 P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG---RlLfagy~d~~c~vWDtlk~e~vg------  309 (343)
T KOG0286|consen  239 PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG---RLLFAGYDDFTCNVWDTLKGERVG------  309 (343)
T ss_pred             cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc---cEEEeeecCCceeEeeccccceEE------
Confidence            99999999999999999999998887765543   567899999888   899999999999999998776533      


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                       .+.+|.+.|+++..+|||..+++|+.|..++||.
T Consensus       310 -~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  310 -VLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             -EeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence             5578999999999999999999999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.4e-40  Score=272.89  Aligned_cols=276  Identities=17%  Similarity=0.242  Sum_probs=237.0

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      .-+|+++++|-+||+|...++.+..++.        .....|+.+...|+++.||++     ....|++||++++.. ..
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiq--------h~dsqVNrLeiTpdk~~LAaa-----~~qhvRlyD~~S~np-~P   75 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQ--------HPDSQVNRLEITPDKKDLAAA-----GNQHVRLYDLNSNNP-NP   75 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEe--------cCccceeeEEEcCCcchhhhc-----cCCeeEEEEccCCCC-Cc
Confidence            5689999999999999999999999884        334669999999999999996     678899999998754 36


Q ss_pred             EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC
Q 009203          316 VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD  395 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d  395 (540)
                      +..+++   |...|+++.|.. +|+++++|+.||+++|||++...+    +..  ..|..+|+++..+|+...|++|..+
T Consensus        76 v~t~e~---h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~----qR~--~~~~spVn~vvlhpnQteLis~dqs  145 (311)
T KOG0315|consen   76 VATFEG---HTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSC----QRN--YQHNSPVNTVVLHPNQTELISGDQS  145 (311)
T ss_pred             eeEEec---cCCceEEEEEee-cCeEEEecCCCceEEEEeccCccc----chh--ccCCCCcceEEecCCcceEEeecCC
Confidence            677776   567799999999 999999999999999999999664    333  2378999999999999999999999


Q ss_pred             CeEEEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEE
Q 009203          396 KRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ  473 (540)
Q Consensus       396 g~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~  473 (540)
                      |.|++||+....+...  ......+.++...|++   .+++.+...|..++|++-+... ...+.....+..|.+.+..+
T Consensus       146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg---sml~a~nnkG~cyvW~l~~~~~-~s~l~P~~k~~ah~~~il~C  221 (311)
T KOG0315|consen  146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG---SMLAAANNKGNCYVWRLLNHQT-ASELEPVHKFQAHNGHILRC  221 (311)
T ss_pred             CcEEEEEccCCccccccCCCCCcceeeEEEcCCC---cEEEEecCCccEEEEEccCCCc-cccceEhhheecccceEEEE
Confidence            9999999998765433  4445778889999988   7999999999999999987443 22222334578899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          474 SWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       474 ~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .+|||+++||+++.|.+++||+.++- .+.-..+.+|...+++.+||.||.||++|+.|+.+++|++
T Consensus       222 ~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  222 LLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL  287 (311)
T ss_pred             EECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence            99999999999999999999999973 3666678899999999999999999999999999999985

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3e-39  Score=273.00  Aligned_cols=292  Identities=17%  Similarity=0.229  Sum_probs=240.8

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      .++++|++.|+.++..+.+..+|++++.|.++.+|++.......-..   .....||...|..++.++||++.+++    
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~---~r~~~GHsH~v~dv~~s~dg~~alS~----   81 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVP---VRRLTGHSHFVSDVVLSSDGNFALSA----   81 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCce---eeeeeccceEecceEEccCCceEEec----
Confidence            35789999999999999778899999999999999997653221110   01116899999999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|+.+++||+.++   +..+.|.+   |...|.+++|++ ++..+++|+.|.+|++|++-...    ...+....+.+.
T Consensus        82 swD~~lrlWDl~~g---~~t~~f~G---H~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~c----k~t~~~~~~~~W  150 (315)
T KOG0279|consen   82 SWDGTLRLWDLATG---ESTRRFVG---HTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVC----KYTIHEDSHREW  150 (315)
T ss_pred             cccceEEEEEecCC---cEEEEEEe---cCCceEEEEecC-CCceeecCCCcceeeeeeecccE----EEEEecCCCcCc
Confidence            99999999999987   44666665   667799999999 99999999999999999998764    244444445889


Q ss_pred             eeEEEeccC--CCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          377 VMGVAGMQQ--KQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       377 v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      |.|+.|+|+  ..+|++++.|++|++||+++.+....+ .+.+.+..+.++|++   .++++|+.||.+.+||++.++..
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG---slcasGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG---SLCASGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC---CEEecCCCCceEEEEEccCCcee
Confidence            999999997  689999999999999999988776654 455778899999998   78999999999999999988863


Q ss_pred             eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc----c-----ccceeEEEEcCCCC
Q 009203          454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA----H-----QKRVFKAVWHYSHP  524 (540)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~----h-----~~~i~~l~~s~~~~  524 (540)
                      ..        .+|...|.+++|+|+.-+|+.+.. ..|+|||+.+  ...+..+..    .     .-.-.+++|++||.
T Consensus       228 ys--------l~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~--~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~  296 (315)
T KOG0279|consen  228 YS--------LEAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLES--KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ  296 (315)
T ss_pred             Ee--------ccCCCeEeeEEecCCceeEeeccC-CceEEEeccc--hhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence            32        357789999999999887877754 4499999998  555555541    1     12346789999999


Q ss_pred             EEEEEEcCCcEEEEeC
Q 009203          525 LLISISSDLNIGLHKI  540 (540)
Q Consensus       525 ~l~s~~~dg~v~iw~l  540 (540)
                      .|++|-.|+.|++|.+
T Consensus       297 tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  297 TLFAGYTDNVIRVWQV  312 (315)
T ss_pred             EEEeeecCCcEEEEEe
Confidence            9999999999999975

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-39  Score=272.04  Aligned_cols=292  Identities=17%  Similarity=0.255  Sum_probs=239.9

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------hh
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------HV  218 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------~~  218 (540)
                      ..+.+|...|..+++.+..+                              ..+.+++.|.++.+|+..          .-
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~------------------------------~~l~sasrDk~ii~W~L~~dd~~~G~~~r~   58 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNS------------------------------DILVSASRDKTIIVWKLTSDDIKYGVPVRR   58 (315)
T ss_pred             eeecCCCceEEEEEeecCCC------------------------------ceEEEcccceEEEEEEeccCccccCceeee
Confidence            35568889998888887743                              256678889999999553          44


Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +.||+..|..+..++| |++.++++.|+++++||+.+++....+        .||...|.+++|++|.+.|++|    +.
T Consensus        59 ~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl~~g~~t~~f--------~GH~~dVlsva~s~dn~qivSG----Sr  125 (315)
T KOG0279|consen   59 LTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDLATGESTRRF--------VGHTKDVLSVAFSTDNRQIVSG----SR  125 (315)
T ss_pred             eeccceEecceEEccC-CceEEeccccceEEEEEecCCcEEEEE--------EecCCceEEEEecCCCceeecC----CC
Confidence            8999999999999996 999999999999999999999877766        5999999999999999999999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-CCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      |.+|.+|+.-..    +...+.... +.+.|.|+.|+|.. ..+|++++.|++|++||+++.+.     .....+|++.+
T Consensus       126 DkTiklwnt~g~----ck~t~~~~~-~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-----~~~~~gh~~~v  195 (315)
T KOG0279|consen  126 DKTIKLWNTLGV----CKYTIHEDS-HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-----RTTFIGHSGYV  195 (315)
T ss_pred             cceeeeeeeccc----EEEEEecCC-CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-----hhccccccccE
Confidence            999999999853    333333322 27889999999942 77899999999999999999774     22235799999


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      +.+++||||.++++|+.||.+.+||++.++.++.......+.+++|+|..    +.++...+..|+|||+.+.......-
T Consensus       196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr----ywL~~at~~sIkIwdl~~~~~v~~l~  271 (315)
T KOG0279|consen  196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR----YWLCAATATSIKIWDLESKAVVEELK  271 (315)
T ss_pred             EEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc----eeEeeccCCceEEEeccchhhhhhcc
Confidence            99999999999999999999999999999999999999999999999986    55555566779999999876432210


Q ss_pred             -cccc-ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          458 -GWKQ-ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       458 -~~~~-~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                       .... ......-...+++|++||..|++|..|+.|++|.+.
T Consensus       272 ~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  272 LDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence             0000 112223345678999999999999999999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.6e-38  Score=284.64  Aligned_cols=321  Identities=16%  Similarity=0.218  Sum_probs=263.0

Q ss_pred             CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccch---------hc----
Q 009203          153 PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNH---------VS----  219 (540)
Q Consensus       153 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~~---------~~----  219 (540)
                      .|..+|.++++.|.+.                              ..+++++.|.+.++|+...         +|    
T Consensus       176 ~~~~~V~~~~WnP~~~------------------------------~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~  225 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRD------------------------------GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCI  225 (524)
T ss_pred             cCCCceEEEecCchhh------------------------------hhhhccCCccceeeeeehhhccccchhhhhhhhh
Confidence            3888888888888742                              1456677777777775431         11    


Q ss_pred             --ccc----cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEe
Q 009203          220 --SLH----KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAH  293 (540)
Q Consensus       220 --~~h----~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~  293 (540)
                        .++    +..|++|+|+.+ |.+||+|+.||.++||+... ..+.++        ..|.++|.++.|+.+|++|+++ 
T Consensus       226 ~~~~~s~~~nkdVT~L~Wn~~-G~~LatG~~~G~~riw~~~G-~l~~tl--------~~HkgPI~slKWnk~G~yilS~-  294 (524)
T KOG0273|consen  226 REGGKSVPSNKDVTSLDWNND-GTLLATGSEDGEARIWNKDG-NLISTL--------GQHKGPIFSLKWNKKGTYILSG-  294 (524)
T ss_pred             hhhcccCCccCCcceEEecCC-CCeEEEeecCcEEEEEecCc-hhhhhh--------hccCCceEEEEEcCCCCEEEec-
Confidence              122    368999999995 99999999999999999864 444444        5799999999999999999999 


Q ss_pred             ecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203          294 TADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH  373 (540)
Q Consensus       294 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  373 (540)
                         +.|+++.+||..++   ...+.+..   |..+-..+.|-  +...|++++.|+.|+++.+....+   ...+  .+|
T Consensus       295 ---~vD~ttilwd~~~g---~~~q~f~~---~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P---~~t~--~GH  358 (524)
T KOG0273|consen  295 ---GVDGTTILWDAHTG---TVKQQFEF---HSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRP---VKTF--IGH  358 (524)
T ss_pred             ---cCCccEEEEeccCc---eEEEeeee---ccCCccceEEe--cCceEeecCCCceEEEEEecCCCc---ceee--ecc
Confidence               99999999999887   44555553   45555778887  566799999999999999988764   2333  559


Q ss_pred             CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCC------CceEEEEEcCCCeEEEEE
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDF------NLFMVQTGTPGRQLRLYD  446 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~l~~~~~dg~v~i~d  446 (540)
                      .+.|.++.|+|.|.+|++++.|++++||.......... +.+...+..+.|+|.++      .+..+++++.|++|++||
T Consensus       359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd  438 (524)
T KOG0273|consen  359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD  438 (524)
T ss_pred             cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence            99999999999999999999999999999887666544 33445778888888653      236899999999999999


Q ss_pred             CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEE
Q 009203          447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL  526 (540)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l  526 (540)
                      +..+.+..       .+..|+.+|.+++|+|+|+|+|+|+.||.|.||+...  ++.++.+.+ .+.|..++|+.+|.+|
T Consensus       439 v~~gv~i~-------~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~--~~l~~s~~~-~~~Ifel~Wn~~G~kl  508 (524)
T KOG0273|consen  439 VESGVPIH-------TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT--GKLVKSYQG-TGGIFELCWNAAGDKL  508 (524)
T ss_pred             ccCCceeE-------eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc--hheeEeecC-CCeEEEEEEcCCCCEE
Confidence            99887644       4568999999999999999999999999999999998  788888775 4469999999999999


Q ss_pred             EEEEcCCcEEEEeC
Q 009203          527 ISISSDLNIGLHKI  540 (540)
Q Consensus       527 ~s~~~dg~v~iw~l  540 (540)
                      ..+-.|+.+++-||
T Consensus       509 ~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  509 GACASDGSVCVLDL  522 (524)
T ss_pred             EEEecCCCceEEEe
Confidence            99999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.9e-40  Score=291.50  Aligned_cols=280  Identities=20%  Similarity=0.314  Sum_probs=241.1

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      +-+|..|.|.|+ |+.|++|+..|.+.+|+...-.        ++.....|..+|+++.|+++|.++++|    +.+|.|
T Consensus        96 kc~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~fn--------FEtilQaHDs~Vr~m~ws~~g~wmiSg----D~gG~i  162 (464)
T KOG0284|consen   96 KCPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSFN--------FETILQAHDSPVRTMKWSHNGTWMISG----DKGGMI  162 (464)
T ss_pred             ccceeeEEEcCC-CceeEeecccccEEEecCceee--------HHHHhhhhcccceeEEEccCCCEEEEc----CCCceE
Confidence            357999999995 9999999999999999984322        111225899999999999999999999    999999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      ++|+.+-    ..+..+..  +|...|.+++|+| +...|++++.||+|+|||....+.   ...+  .+|.-.|.+++|
T Consensus       163 KyWqpnm----nnVk~~~a--hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~ke---e~vL--~GHgwdVksvdW  230 (464)
T KOG0284|consen  163 KYWQPNM----NNVKIIQA--HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKE---ERVL--RGHGWDVKSVDW  230 (464)
T ss_pred             Eecccch----hhhHHhhH--hhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCch---hhee--ccCCCCcceecc
Confidence            9999874    22444444  5668899999999 888999999999999999998764   2333  679999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ  461 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  461 (540)
                      +|.-.+|++++.|..|++||.+++.++.. +.+...++.+.|+|.+   .+|++++.|..+++||+++.+...       
T Consensus       231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~---N~Llt~skD~~~kv~DiR~mkEl~-------  300 (464)
T KOG0284|consen  231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG---NWLLTGSKDQSCKVFDIRTMKELF-------  300 (464)
T ss_pred             CCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC---CeeEEccCCceEEEEehhHhHHHH-------
Confidence            99999999999999999999999999876 6667889999999988   699999999999999999666433       


Q ss_pred             ccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccCCCCcccccc-cccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          462 ESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       462 ~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .+.+|...|+++.|+| ...+|.+|+.||.|..|.+..  .+++..+ .+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus       301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~--~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL--EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             HhhcchhhheeeccccccccceeeccCCCceEEEeccc--cccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            5578999999999999 567888999999999999985  4555554 47999999999999999999999999999994

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-39  Score=282.70  Aligned_cols=290  Identities=18%  Similarity=0.283  Sum_probs=251.8

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +-+.||..+|+.+-|+|+ -.++++++.|++|++||..+++....+        .||.+.|.+++|+..|++|+++    
T Consensus       102 ~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~L--------rGHt~sv~di~~~a~Gk~l~tc----  168 (406)
T KOG0295|consen  102 QKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSL--------RGHTDSVFDISFDASGKYLATC----  168 (406)
T ss_pred             hhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhh--------hccccceeEEEEecCccEEEec----
Confidence            345789999999999995 889999999999999999999987666        6999999999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|-.+.+||..+.  ..+++.+.+   |.-.|.++.|-| .|++|++++.|.+|+.|++.++.+   ...+  .+|...
T Consensus       169 SsDl~~~LWd~~~~--~~c~ks~~g---h~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~c---v~t~--~~h~ew  237 (406)
T KOG0295|consen  169 SSDLSAKLWDFDTF--FRCIKSLIG---HEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYC---VKTF--PGHSEW  237 (406)
T ss_pred             CCccchhheeHHHH--HHHHHHhcC---cccceeeEEEEe-cCCeeeecccccceeEEeccccee---EEec--cCchHh
Confidence            99999999999864  455666555   556799999999 899999999999999999999987   3444  569999


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCee---eeeccCccEEEEeec----------CCCCCceEEEEEcCCCeEE
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD---FKHQIESKCMSVLPN----------PCDFNLFMVQTGTPGRQLR  443 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~dg~v~  443 (540)
                      |..+..+.||.++++++.|.+|++|-+.++.+.   ..+++...+.+++..          |.+..+.++++++.|++|+
T Consensus       238 vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk  317 (406)
T KOG0295|consen  238 VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK  317 (406)
T ss_pred             EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence            999999999999999999999999999998553   334444444443321          1122346999999999999


Q ss_pred             EEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203          444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH  523 (540)
Q Consensus       444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~  523 (540)
                      +||+.++.+.+       ++.+|.+.|..++|+|.|+||+++.+|+++++||+.+  .++..++..|..-|++++|+.+.
T Consensus       318 ~wdv~tg~cL~-------tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~--~~cmk~~~ah~hfvt~lDfh~~~  388 (406)
T KOG0295|consen  318 IWDVSTGMCLF-------TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN--LQCMKTLEAHEHFVTSLDFHKTA  388 (406)
T ss_pred             EEeccCCeEEE-------EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc--ceeeeccCCCcceeEEEecCCCC
Confidence            99999998766       5578999999999999999999999999999999998  88999999999999999999999


Q ss_pred             CEEEEEEcCCcEEEEe
Q 009203          524 PLLISISSDLNIGLHK  539 (540)
Q Consensus       524 ~~l~s~~~dg~v~iw~  539 (540)
                      .+++||+-|.++++|.
T Consensus       389 p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  389 PYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ceEEeccccceeeeee
Confidence            9999999999999995

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.6e-39  Score=279.25  Aligned_cols=288  Identities=18%  Similarity=0.273  Sum_probs=246.2

Q ss_pred             eccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEE
Q 009203          213 HTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSA  292 (540)
Q Consensus       213 ~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~  292 (540)
                      |....++.||.+.|.|+++.| +..+|++|+.|++++|||+.+++...++        +||...|..+++++-..+|+++
T Consensus       141 wKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lkltl--------tGhi~~vr~vavS~rHpYlFs~  211 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTL--------TGHIETVRGVAVSKRHPYLFSA  211 (460)
T ss_pred             ceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEee--------cchhheeeeeeecccCceEEEe
Confidence            555688999999999999999 6999999999999999999999887777        7899999999999999999999


Q ss_pred             eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203          293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL  372 (540)
Q Consensus       293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  372 (540)
                          +.|+.|+.||+...   +.++...+   |-+.|.|++.+| .-+.|++|+.|.++++||+++...     .....+
T Consensus       212 ----gedk~VKCwDLe~n---kvIR~YhG---HlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~-----V~~l~G  275 (460)
T KOG0285|consen  212 ----GEDKQVKCWDLEYN---KVIRHYHG---HLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRAS-----VHVLSG  275 (460)
T ss_pred             ----cCCCeeEEEechhh---hhHHHhcc---ccceeEEEeccc-cceeEEecCCcceEEEeeecccce-----EEEecC
Confidence                99999999999975   44555544   667799999999 889999999999999999999864     444477


Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      |...|.++.+.|-...+++|+.|++|++||++.|+.... ..+...+.+++.+|..   ..+++++.| .|+-|++..+.
T Consensus       276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e---~~fASas~d-nik~w~~p~g~  351 (460)
T KOG0285|consen  276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE---NLFASASPD-NIKQWKLPEGE  351 (460)
T ss_pred             CCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch---hhhhccCCc-cceeccCCccc
Confidence            999999999999888999999999999999999988665 4456778899999986   466776665 78999998776


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc--------ccccceeEEEEcCCC
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR--------AHQKRVFKAVWHYSH  523 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--------~h~~~i~~l~~s~~~  523 (540)
                      ...       .+.+|...|++++...|| ++++|+++|.+.+||..+  +...+...        .....|++.+|...|
T Consensus       352 f~~-------nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwks--g~nyQ~~~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  352 FLQ-------NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS--GHNYQRGQTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             hhh-------ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCc--CcccccccccccCCccccccceeEEeecccC
Confidence            432       567899999999998765 888999999999999997  33333221        124579999999999


Q ss_pred             CEEEEEEcCCcEEEEe
Q 009203          524 PLLISISSDLNIGLHK  539 (540)
Q Consensus       524 ~~l~s~~~dg~v~iw~  539 (540)
                      ..|++|..|.+|++|+
T Consensus       422 ~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  422 SRLITGEADKTIKMYK  437 (460)
T ss_pred             ceEEeccCCcceEEEe
Confidence            9999999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-37  Score=261.19  Aligned_cols=292  Identities=20%  Similarity=0.281  Sum_probs=237.1

Q ss_pred             hhcccccCceEEEEEecCC-CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          217 HVSSLHKRKLRSLSLNPVN-EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~-~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      +.+.||.+.|..++|+| + |.+||+|+.|+.|+||+...+.. .+......   .+|+..|.+++|+|.|++|+++   
T Consensus         8 ~~~~gh~~r~W~~awhp-~~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld---~~hkrsVRsvAwsp~g~~La~a---   79 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHP-GKGVILASCGTDKAVRIWSTSSGDS-WTCKTVLD---DGHKRSVRSVAWSPHGRYLASA---   79 (312)
T ss_pred             EeecCCCCcEEEEEecc-CCceEEEeecCCceEEEEecCCCCc-EEEEEecc---ccchheeeeeeecCCCcEEEEe---
Confidence            45689999999999999 5 78999999999999999986332 23322222   4899999999999999999999   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                       +.|.++.||.-..+ ..+++..+++   |...|.|++|++ +|++||+++.|..|.||.+..+........+  ..|..
T Consensus        80 -SFD~t~~Iw~k~~~-efecv~~lEG---HEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL--~~Htq  151 (312)
T KOG0645|consen   80 -SFDATVVIWKKEDG-EFECVATLEG---HENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVL--QEHTQ  151 (312)
T ss_pred             -eccceEEEeecCCC-ceeEEeeeec---cccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeee--ccccc
Confidence             99999999987744 3477888887   778999999999 9999999999999999999866542223333  56999


Q ss_pred             ceeEEEeccCCCEEEEEeCCCeEEEEECCC-C--Ceeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGV-G--RADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~--~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      .|..+.|+|...+|++++.|.+|++|+-.. +  .+..... ....+.++.|++.+   ..|++++.|++|+||-..+.-
T Consensus       152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G---~rl~s~sdD~tv~Iw~~~~~~  228 (312)
T KOG0645|consen  152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG---SRLVSCSDDGTVSIWRLYTDL  228 (312)
T ss_pred             cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC---ceEEEecCCcceEeeeeccCc
Confidence            999999999999999999999999998773 2  2333333 34588899999987   689999999999999866221


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcc----cc-cccccccceeEEEEcCC-CCE
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP----SQ-SIRAHQKRVFKAVWHYS-HPL  525 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~----~~-~~~~h~~~i~~l~~s~~-~~~  525 (540)
                                 ..-|...+..+.|.  ...|++++.|+.|++|.-......+    +. .-..|...|++++|+|. ..+
T Consensus       229 -----------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~  295 (312)
T KOG0645|consen  229 -----------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNR  295 (312)
T ss_pred             -----------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCc
Confidence                       13467789999997  5589999999999999877521122    21 23468889999999995 579


Q ss_pred             EEEEEcCCcEEEEeC
Q 009203          526 LISISSDLNIGLHKI  540 (540)
Q Consensus       526 l~s~~~dg~v~iw~l  540 (540)
                      |++|+.||.|++|.+
T Consensus       296 L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  296 LASGGDDGIVNFWEL  310 (312)
T ss_pred             eeecCCCceEEEEEe
Confidence            999999999999975

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2e-39  Score=293.84  Aligned_cols=290  Identities=17%  Similarity=0.269  Sum_probs=246.8

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCC-CCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS-RGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      +.+.||+..|+++.|.|-.+.+|++|+.|+.|+||++-. +.++.++        .||..+|.+++|+++|..++++   
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf--------~gH~k~Vrd~~~s~~g~~fLS~---  276 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF--------KGHRKPVRDASFNNCGTSFLSA---  276 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh--------hcchhhhhhhhccccCCeeeee---
Confidence            457899999999999996699999999999999999977 6667777        6999999999999999999999   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                       +.|+.|++||+++|   .+...+..    ...++|+.|+|++.+.|++|+.|+.|+.||+++++.   .+..  ..|-+
T Consensus       277 -sfD~~lKlwDtETG---~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv---vqeY--d~hLg  343 (503)
T KOG0282|consen  277 -SFDRFLKLWDTETG---QVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV---VQEY--DRHLG  343 (503)
T ss_pred             -ecceeeeeeccccc---eEEEEEec----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH---HHHH--Hhhhh
Confidence             99999999999998   55666553    456899999995559999999999999999999985   3333  44889


Q ss_pred             ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      .|..+.|-++|..+++.+.|+.+++|+.+.+-.+..  ......+.++..+|.+   .++++-+.|+.|.+|.+...-..
T Consensus       344 ~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~---~~~~aQs~dN~i~ifs~~~~~r~  420 (503)
T KOG0282|consen  344 AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG---KWFAAQSMDNYIAIFSTVPPFRL  420 (503)
T ss_pred             heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCC---CeehhhccCceEEEEeccccccc
Confidence            999999999999999999999999999988766543  2223455677778877   68999999999999997643211


Q ss_pred             eeeeccccccCcccc--CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC-CEEEEEE
Q 009203          454 IHAFGWKQESSESQS--ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH-PLLISIS  530 (540)
Q Consensus       454 ~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~-~~l~s~~  530 (540)
                          .....+.+|..  .-..+.|||||.+|++|+.||.+.+||..+  .+.+..++.|..++..+.|+|.. ..+|+||
T Consensus       421 ----nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt--~kl~~~lkah~~~ci~v~wHP~e~Skvat~~  494 (503)
T KOG0282|consen  421 ----NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT--TKLVSKLKAHDQPCIGVDWHPVEPSKVATCG  494 (503)
T ss_pred             ----CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh--hhhhhccccCCcceEEEEecCCCcceeEecc
Confidence                11234566654  467789999999999999999999999998  78999999999999999999976 4799999


Q ss_pred             cCCcEEEEe
Q 009203          531 SDLNIGLHK  539 (540)
Q Consensus       531 ~dg~v~iw~  539 (540)
                      .||.|++|+
T Consensus       495 w~G~Ikiwd  503 (503)
T KOG0282|consen  495 WDGLIKIWD  503 (503)
T ss_pred             cCceeEecC
Confidence            999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-37  Score=295.30  Aligned_cols=374  Identities=17%  Similarity=0.173  Sum_probs=297.1

Q ss_pred             CCeeeecC-CcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccceEE-----------ecCCCCeEE
Q 009203          146 GSSTQASP-AAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIPLVR-----------TSASPATIH  211 (540)
Q Consensus       146 ~~~~~~~~-h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~d~~i~  211 (540)
                      ..+++... |+.+|-.+++.|...+.+  +-|..+.-.-+.+......+.+|.+.|..+.           ++..|++++
T Consensus        95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~  174 (775)
T KOG0319|consen   95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR  174 (775)
T ss_pred             hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence            33444444 999999999999986666  4444444334455555566677777776554           566799999


Q ss_pred             Eeccc------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeec---------------------
Q 009203          212 CHTSN------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLS---------------------  264 (540)
Q Consensus       212 ~~~~~------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~---------------------  264 (540)
                      +|++.      +++..|...|++++|++| +..+++++.|..+.|||+...+...++..                     
T Consensus       175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d-~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~  253 (775)
T KOG0319|consen  175 VWNLNDKRTCLHTMILHKSAVTSLAFSED-SLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI  253 (775)
T ss_pred             EEEcccCchHHHHHHhhhhheeeeeeccC-CceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence            99886      568999999999999997 88888999999999998754321111000                     


Q ss_pred             --------------------------------------------------------------------------------
Q 009203          265 --------------------------------------------------------------------------------  264 (540)
Q Consensus       265 --------------------------------------------------------------------------------  264 (540)
                                                                                                      
T Consensus       254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG  333 (775)
T KOG0319|consen  254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG  333 (775)
T ss_pred             EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence                                                                                            


Q ss_pred             ----------------------ccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCc-eeEEeecC
Q 009203          265 ----------------------TTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGR-ACVTFLDD  321 (540)
Q Consensus       265 ----------------------~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~-~~~~~~~~  321 (540)
                                            ..-....||++.|.++....+|.+|++|    +.|.++++|.++.+... .++...  
T Consensus       334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~----sKD~svilWr~~~~~~~~~~~a~~--  407 (775)
T KOG0319|consen  334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATG----SKDKSVILWRLNNNCSKSLCVAQA--  407 (775)
T ss_pred             CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEe----cCCceEEEEEecCCcchhhhhhhh--
Confidence                                  0000124888889999966678899999    99999999999544221 122222  


Q ss_pred             CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee----ecccCCcceeEEEeccCCCEEEEEeCCCe
Q 009203          322 KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL----HRNLHSSAVMGVAGMQQKQIVLSAGADKR  397 (540)
Q Consensus       322 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~v~~l~~s~~~~~l~~~~~dg~  397 (540)
                       ..|.+.|.+++++.....+|++++.|+++++|++...+....+..+    ....|...|++++.+|+..++++||.|.+
T Consensus       408 -~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt  486 (775)
T KOG0319|consen  408 -NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT  486 (775)
T ss_pred             -cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence             2478889999998766789999999999999999874332222222    22459999999999999999999999999


Q ss_pred             EEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          398 IIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       398 i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      .++|++..+...... .+...+.++.|+|.+   +.++++|.|++|+||.+.+..+..       ++.||...|..+.|-
T Consensus       487 aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d---q~laT~SgD~TvKIW~is~fSClk-------T~eGH~~aVlra~F~  556 (775)
T KOG0319|consen  487 AKIWDLEQLRLLGVLSGHTRGVWCVSFSKND---QLLATCSGDKTVKIWSISTFSCLK-------TFEGHTSAVLRASFI  556 (775)
T ss_pred             eeeecccCceEEEEeeCCccceEEEEecccc---ceeEeccCCceEEEEEeccceeee-------eecCccceeEeeeee
Confidence            999999977665553 455678899999987   799999999999999999988754       678999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          477 PDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       477 p~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .+|+.|++++.||-|++|++.+  ..++.++..|.+.|++++-++.+.+++||+.||.|.+|.
T Consensus       557 ~~~~qliS~~adGliKlWnikt--~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  557 RNGKQLISAGADGLIKLWNIKT--NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eCCcEEEeccCCCcEEEEeccc--hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            9999999999999999999998  899999999999999999999999999999999999995

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.5e-37  Score=272.22  Aligned_cols=329  Identities=15%  Similarity=0.222  Sum_probs=277.2

Q ss_pred             CCeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcc
Q 009203          146 GSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSS  220 (540)
Q Consensus       146 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~  220 (540)
                      .+...+..|+..|.+++.+|..+                               .+++++.|-...+|+..     ..+.
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~-------------------------------l~aTGGgDD~AflW~~~~ge~~~elt  103 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNN-------------------------------LVATGGGDDLAFLWDISTGEFAGELT  103 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCc-------------------------------eEEecCCCceEEEEEccCCcceeEec
Confidence            34566779999999999999753                               68899999999999654     4478


Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      ||++.|+|+.|+.| |.+||||..+|.|+||...++.....+..        .-..+.=+.|+|.+..|++|    +.||
T Consensus       104 gHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg~~~~~~~~--------e~~dieWl~WHp~a~illAG----~~DG  170 (399)
T KOG0296|consen  104 GHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTGGEQWKLDQ--------EVEDIEWLKWHPRAHILLAG----STDG  170 (399)
T ss_pred             CCCCceEEEEEccC-ceEEEecCCCccEEEEEcccCceEEEeec--------ccCceEEEEecccccEEEee----cCCC
Confidence            99999999999996 99999999999999999999887666642        22446678999999999999    9999


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                      .+.+|.+.+.   ...+.+.+   |..++++-.|.| +|++++++..||+|++|+..+++...   .+. ........++
T Consensus       171 svWmw~ip~~---~~~kv~~G---h~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~---~~~-~~e~~~~~~~  239 (399)
T KOG0296|consen  171 SVWMWQIPSQ---ALCKVMSG---HNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLH---KIT-QAEGLELPCI  239 (399)
T ss_pred             cEEEEECCCc---ceeeEecC---CCCCcccccccC-CCceEEEEecCceEEEEecCCCceeE---Eec-ccccCcCCcc
Confidence            9999999975   45667776   678899999999 99999999999999999999997522   221 2234567889


Q ss_pred             EeccCCCEEEEEeCCCeEEEEECCCCCeeeeec---------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          381 AGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ---------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      .++..+..++.|+.++.+++.+..+|+.+....         .....-++.+.|......+.|+|+-||+|.|||+....
T Consensus       240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~  319 (399)
T KOG0296|consen  240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST  319 (399)
T ss_pred             ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence            999999999999999999999998888765543         23445566677766666789999999999999998665


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      ..        ....|..+|+.+.|-+ ..+|++++.+|.|+.||.++  +.++.++.+|...|.+++++|+.++++|+|.
T Consensus       320 ~R--------~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt--G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~  388 (399)
T KOG0296|consen  320 LR--------HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDART--GQLKFTYTGHQMGILDFALSPQKRLVVTVSD  388 (399)
T ss_pred             hh--------eeccCCCceEEEEEcC-cchheeeccCceEEeeeccc--cceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence            32        2245888999999988 78999999999999999999  8999999999999999999999999999999


Q ss_pred             CCcEEEEeC
Q 009203          532 DLNIGLHKI  540 (540)
Q Consensus       532 dg~v~iw~l  540 (540)
                      |++.+||++
T Consensus       389 D~~a~VF~v  397 (399)
T KOG0296|consen  389 DNTALVFEV  397 (399)
T ss_pred             CCeEEEEec
Confidence            999999974

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.7e-37  Score=265.01  Aligned_cols=288  Identities=19%  Similarity=0.255  Sum_probs=240.1

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      ..+.||++.|+.+.|+|+ |.+||+|+.|..|.+|++... +....+        .+|.++|..+.|.+|++.|+++   
T Consensus        41 m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~l--------kgHsgAVM~l~~~~d~s~i~S~---  108 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVL--------KGHSGAVMELHGMRDGSHILSC---  108 (338)
T ss_pred             hhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeee--------ccccceeEeeeeccCCCEEEEe---
Confidence            457899999999999995 999999999999999996543 333333        5999999999999999999999   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                       +.|.+|+.||++++   ++...+.+   |...|+++.-+..+..++.+|+.|+++++||++...++   +.+   ...-
T Consensus       109 -gtDk~v~~wD~~tG---~~~rk~k~---h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~---~t~---~~ky  175 (338)
T KOG0265|consen  109 -GTDKTVRGWDAETG---KRIRKHKG---HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI---KTF---ENKY  175 (338)
T ss_pred             -cCCceEEEEecccc---eeeehhcc---ccceeeecCccccCCeEEEecCCCceEEEEeecccchh---hcc---ccce
Confidence             99999999999998   44555554   67778888866545677889999999999999987752   222   1456


Q ss_pred             ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      .++++.|...+..+++|+-|+.|++||++.+..++.. .+...++.+..++.+   .++.+-+.|.++++||++-.....
T Consensus       176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g---s~llsnsMd~tvrvwd~rp~~p~~  252 (338)
T KOG0265|consen  176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG---SFLLSNSMDNTVRVWDVRPFAPSQ  252 (338)
T ss_pred             eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC---CccccccccceEEEEEecccCCCC
Confidence            7999999999999999999999999999998887764 455788899999988   689999999999999998643222


Q ss_pred             eeeccccccCcc----ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          455 HAFGWKQESSES----QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       455 ~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ..+.   .+.+|    ......++|+|+++.+.+|+.|..+++||...  ...+..+.+|.+.|++++|+|...+|.+++
T Consensus       253 R~v~---if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~--r~~lyklpGh~gsvn~~~Fhp~e~iils~~  327 (338)
T KOG0265|consen  253 RCVK---IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS--RRILYKLPGHYGSVNEVDFHPTEPIILSCS  327 (338)
T ss_pred             ceEE---EeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc--ccEEEEcCCcceeEEEeeecCCCcEEEEec
Confidence            1111   11222    23456789999999999999999999999997  788999999999999999999999999999


Q ss_pred             cCCcEEE
Q 009203          531 SDLNIGL  537 (540)
Q Consensus       531 ~dg~v~i  537 (540)
                      .|.+|++
T Consensus       328 sdk~i~l  334 (338)
T KOG0265|consen  328 SDKTIYL  334 (338)
T ss_pred             cCceeEe
Confidence            9999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.2e-38  Score=277.99  Aligned_cols=292  Identities=18%  Similarity=0.233  Sum_probs=242.5

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +++..|++.|+-+.||+ +|++||+++.|.+..||.+..... ..+..+.    .||..+|..+.|+||.++|++|    
T Consensus       218 qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tl----vgh~~~V~yi~wSPDdryLlaC----  287 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVH-FKLKKTL----VGHSQPVSYIMWSPDDRYLLAC----  287 (519)
T ss_pred             hhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcc-eeeeeee----ecccCceEEEEECCCCCeEEec----
Confidence            67899999999999999 599999999999999999987665 2222222    5999999999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.+..+.+||+.+|   .+...+..  .+...+.+++|.| |+..+++|+.|+++..||++.... ....    ......
T Consensus       288 g~~e~~~lwDv~tg---d~~~~y~~--~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~-~~W~----gvr~~~  356 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTG---DLRHLYPS--GLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNIL-GNWE----GVRDPK  356 (519)
T ss_pred             CchHheeeccCCcc---hhhhhccc--CcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchh-hccc----ccccce
Confidence            99999999999998   33444433  2456799999999 999999999999999999987542 1111    113356


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      |.+++.++||+++++.+.|..|++|+..+.........+..++++..+.++   .++++.-.+..+++||+.........
T Consensus       357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~---k~~LvnL~~qei~LWDl~e~~lv~kY  433 (519)
T KOG0293|consen  357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDG---KLALVNLQDQEIHLWDLEENKLVRKY  433 (519)
T ss_pred             eEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCC---cEEEEEcccCeeEEeecchhhHHHHh
Confidence            999999999999999999999999999887766667778889999999887   78889999999999999976655554


Q ss_pred             eccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC-EEEEEEcCCc
Q 009203          457 FGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-LLISISSDLN  534 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~  534 (540)
                      +|+.+     ...+..-+|.- +..++++|++|+.|+||+..+  ++++..+.||...|++++|+|..+ ++|++|+||+
T Consensus       434 ~Ghkq-----~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s--gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  434 FGHKQ-----GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS--GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT  506 (519)
T ss_pred             hcccc-----cceEEEeccCCCCcceEEecCCCceEEEEEccC--CceeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence            44321     12344446643 558999999999999999998  899999999999999999999875 7999999999


Q ss_pred             EEEEe
Q 009203          535 IGLHK  539 (540)
Q Consensus       535 v~iw~  539 (540)
                      |+||.
T Consensus       507 IRIWg  511 (519)
T KOG0293|consen  507 IRIWG  511 (519)
T ss_pred             EEEec
Confidence            99996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=252.95  Aligned_cols=284  Identities=13%  Similarity=0.241  Sum_probs=236.7

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC--cceeecccccCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS--GASLLSTTDCLSPK  272 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~  272 (540)
                      .+++++-|.+|++|...     .++....+.|+.+...|| ++.||+++. ..||+||+.++..  +.++        .+
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np~Pv~t~--------e~   81 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNPNPVATF--------EG   81 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCCCceeEE--------ec
Confidence            58899999999999543     445666788999999997 888888875 5899999998764  2333        58


Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV  352 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  352 (540)
                      |...|+++.|..+|+++++|    +.||+++|||++..   .+.+.++    +.++|+++..+| +...|++|..+|.|+
T Consensus        82 h~kNVtaVgF~~dgrWMyTg----seDgt~kIWdlR~~---~~qR~~~----~~spVn~vvlhp-nQteLis~dqsg~ir  149 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDGRWMYTG----SEDGTVKIWDLRSL---SCQRNYQ----HNSPVNTVVLHP-NQTELISGDQSGNIR  149 (311)
T ss_pred             cCCceEEEEEeecCeEEEec----CCCceEEEEeccCc---ccchhcc----CCCCcceEEecC-CcceEEeecCCCcEE
Confidence            99999999999999999999    99999999999974   4444444    468899999999 888999999999999


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee------ee-eccCccEEEEeecC
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD------FK-HQIESKCMSVLPNP  425 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~------~~-~~~~~~~~~~~~~~  425 (540)
                      +||+....+...+.    ......|.++...|||.+++.+...|.+++|++-+....      .+ ..+...+....++|
T Consensus       150 vWDl~~~~c~~~li----Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP  225 (311)
T KOG0315|consen  150 VWDLGENSCTHELI----PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP  225 (311)
T ss_pred             EEEccCCccccccC----CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence            99999876522221    234578999999999999999999999999999764432      22 23457889999999


Q ss_pred             CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc
Q 009203          426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ  505 (540)
Q Consensus       426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~  505 (540)
                      ++   .+|++++.|.+++||+..+. ...     ...+.+|...++.++||.||.||++|+.|+.+++|++..  ++.+.
T Consensus       226 d~---k~lat~ssdktv~iwn~~~~-~kl-----e~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~--~k~v~  294 (311)
T KOG0315|consen  226 DV---KYLATCSSDKTVKIWNTDDF-FKL-----ELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA--GKEVR  294 (311)
T ss_pred             CC---cEEEeecCCceEEEEecCCc-eee-----EEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc--Cceee
Confidence            98   89999999999999999976 111     125678999999999999999999999999999999998  78889


Q ss_pred             cccccccceeEEEEc
Q 009203          506 SIRAHQKRVFKAVWH  520 (540)
Q Consensus       506 ~~~~h~~~i~~l~~s  520 (540)
                      .+.+|-....|++..
T Consensus       295 qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  295 QYQGHHKAAVCVALN  309 (311)
T ss_pred             ecCCcccccEEEEee
Confidence            999998887777764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-35  Score=281.88  Aligned_cols=362  Identities=17%  Similarity=0.187  Sum_probs=287.5

Q ss_pred             CCCCCeeeecCCcceeeEEEEcccccccC--CCCccEEEEeecCC--CceEEecccccccceEEec---------CCCCe
Q 009203          143 DPSGSSTQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGT--KRKFEQKEHRELIPLVRTS---------ASPAT  209 (540)
Q Consensus       143 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~---------~~d~~  209 (540)
                      .+....++..+|-..|.++.|.....+..  +.|.+..-.-..+.  -+.+.+.+|..+|-...++         +.|+.
T Consensus       133 ~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~  212 (893)
T KOG0291|consen  133 NPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGA  212 (893)
T ss_pred             CcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCce
Confidence            34444456678999999999998866555  45554442222333  2356678999988665544         45889


Q ss_pred             EEEeccc---------------------------------------hhcccccCceEEEEEecCCCcEEEEEeCCceEEE
Q 009203          210 IHCHTSN---------------------------------------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRL  250 (540)
Q Consensus       210 i~~~~~~---------------------------------------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~i  250 (540)
                      +.+|...                                       +-+......|+|.+|++ +..+||+|-..|...+
T Consensus       213 l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~L  291 (893)
T KOG0291|consen  213 LFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGL  291 (893)
T ss_pred             EEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEE
Confidence            9999432                                       01233347899999999 6999999999999999


Q ss_pred             EEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCccccee
Q 009203          251 WQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIIN  330 (540)
Q Consensus       251 w~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~  330 (540)
                      |.+..-.++..+.        -...+|..++|+..|++|+.|+   +.-|.+.||++.+.     ...++.. .|...++
T Consensus       292 yelP~f~lih~LS--------is~~~I~t~~~N~tGDWiA~g~---~klgQLlVweWqsE-----sYVlKQQ-gH~~~i~  354 (893)
T KOG0291|consen  292 YELPDFNLIHSLS--------ISDQKILTVSFNSTGDWIAFGC---SKLGQLLVWEWQSE-----SYVLKQQ-GHSDRIT  354 (893)
T ss_pred             EecCCceEEEEee--------cccceeeEEEecccCCEEEEcC---CccceEEEEEeecc-----ceeeecc-cccccee
Confidence            9999877666663        2345689999999999999983   55689999999975     2223222 3677899


Q ss_pred             EEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee
Q 009203          331 SIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF  410 (540)
Q Consensus       331 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  410 (540)
                      +++++| ||.++++|+.||.|+|||...+-|   ..++  ..|++.|+.+.|+..|+.+++.+.||+|+.||+...+...
T Consensus       355 ~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC---~vTF--teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR  428 (893)
T KOG0291|consen  355 SLAYSP-DGQLIATGAEDGKVKVWNTQSGFC---FVTF--TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR  428 (893)
T ss_pred             eEEECC-CCcEEEeccCCCcEEEEeccCceE---EEEe--ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence            999999 999999999999999999999976   4444  5599999999999999999999999999999999888876


Q ss_pred             eeccC--ccEEEEeecCCCCCceEEEEEcCCC-eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC
Q 009203          411 KHQIE--SKCMSVLPNPCDFNLFMVQTGTPGR-QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA  487 (540)
Q Consensus       411 ~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~  487 (540)
                      ++..+  ....+++.+|.+   .++++|+.|. .|.+|++.+++..-       .+.||.++|.+++|+|+|..|++|+.
T Consensus       429 Tft~P~p~QfscvavD~sG---elV~AG~~d~F~IfvWS~qTGqllD-------iLsGHEgPVs~l~f~~~~~~LaS~SW  498 (893)
T KOG0291|consen  429 TFTSPEPIQFSCVAVDPSG---ELVCAGAQDSFEIFVWSVQTGQLLD-------ILSGHEGPVSGLSFSPDGSLLASGSW  498 (893)
T ss_pred             eecCCCceeeeEEEEcCCC---CEEEeeccceEEEEEEEeecCeeee-------hhcCCCCcceeeEEccccCeEEeccc
Confidence            65544  455678888877   6788888776 49999999998532       67899999999999999999999999


Q ss_pred             CCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          488 DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       488 dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |.+|++||+-.. ...+.++. +...+..++|+|||+-|+++..||.|.+||+
T Consensus       499 DkTVRiW~if~s-~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  499 DKTVRIWDIFSS-SGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDI  549 (893)
T ss_pred             cceEEEEEeecc-CceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence            999999999863 23444554 5667999999999999999999999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.6e-37  Score=296.77  Aligned_cols=282  Identities=17%  Similarity=0.229  Sum_probs=231.1

Q ss_pred             CCeEEEeccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC
Q 009203          207 PATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG  286 (540)
Q Consensus       207 d~~i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  286 (540)
                      .-.+.+|+..    --...++|..|++| +.+||.|..|..|++|.+...+ +..+.               +..+-   
T Consensus       366 lpSic~YT~~----nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~k-l~~lk---------------~~~~l---  421 (707)
T KOG0263|consen  366 LPSICMYTFH----NTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKK-LKKLK---------------DASDL---  421 (707)
T ss_pred             CCcEEEEEEE----EcCCcceeEeecCC-cchhhccccccEEEEEecchhh-hcccc---------------chhhh---
Confidence            3456666432    22256999999996 8899999999999999997542 12221               11111   


Q ss_pred             CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc
Q 009203          287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK  366 (540)
Q Consensus       287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (540)
                      ..+=+.    +.|-.+.+.|..+.   .....+.+   |.++|..+.|+| +.++|++++.|++|++|.+.+..+     
T Consensus       422 ~~~d~~----sad~~~~~~D~~~~---~~~~~L~G---H~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~-----  485 (707)
T KOG0263|consen  422 SNIDTE----SADVDVDMLDDDSS---GTSRTLYG---HSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSC-----  485 (707)
T ss_pred             cccccc----ccchhhhhccccCC---ceeEEeec---CCCceeeeeecc-cccceeeccCCcceeeeeccccee-----
Confidence            112222    34444666666654   22333444   889999999999 999999999999999999999875     


Q ss_pred             eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEE
Q 009203          367 ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLY  445 (540)
Q Consensus       367 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~  445 (540)
                      .+...+|..+|.++.|+|.|.++++++.|++.++|......++..+. +-..+.++.|+|+.   .|+++|+.|.+|++|
T Consensus       486 ~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs---~Y~aTGSsD~tVRlW  562 (707)
T KOG0263|consen  486 LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS---NYVATGSSDRTVRLW  562 (707)
T ss_pred             EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcc---cccccCCCCceEEEE
Confidence            34446899999999999999999999999999999999888776644 44677789999987   799999999999999


Q ss_pred             ECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCE
Q 009203          446 DIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPL  525 (540)
Q Consensus       446 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~  525 (540)
                      |+.++....       .+.||.++|++++|||+|++|++|+.||.|.+||+.+  +.++..+.+|.+.|.+|.|+.||..
T Consensus       563 Dv~~G~~VR-------iF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~--~~~v~~l~~Ht~ti~SlsFS~dg~v  633 (707)
T KOG0263|consen  563 DVSTGNSVR-------IFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN--GSLVKQLKGHTGTIYSLSFSRDGNV  633 (707)
T ss_pred             EcCCCcEEE-------EecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC--CcchhhhhcccCceeEEEEecCCCE
Confidence            999988644       4578999999999999999999999999999999998  7999999999999999999999999


Q ss_pred             EEEEEcCCcEEEEeC
Q 009203          526 LISISSDLNIGLHKI  540 (540)
Q Consensus       526 l~s~~~dg~v~iw~l  540 (540)
                      ||+||.|.+|++||+
T Consensus       634 Lasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  634 LASGGADNSVRLWDL  648 (707)
T ss_pred             EEecCCCCeEEEEEc
Confidence            999999999999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-36  Score=262.60  Aligned_cols=279  Identities=18%  Similarity=0.252  Sum_probs=244.7

Q ss_pred             cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccCce
Q 009203          152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKRKL  226 (540)
Q Consensus       152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V  226 (540)
                      .+|..+|..+-++|..+                               .+++++.|.+|++||..     ..++||++.|
T Consensus       105 ~g~r~~vt~v~~hp~~~-------------------------------~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv  153 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSEA-------------------------------LVVSASEDATIKVFDTETGELERSLRGHTDSV  153 (406)
T ss_pred             hccccceeeeeeccCce-------------------------------EEEEecCCceEEEEEccchhhhhhhhccccce
Confidence            57888999999988753                               57888899999999765     5689999999


Q ss_pred             EEEEEecCCCcEEEEEeCCceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203          227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL  305 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw  305 (540)
                      ..++|+. .|++|++++.|-.+++||..+. ++...+        .+|...|.+++|-|.|++|+++    +.|.+|+.|
T Consensus       154 ~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~--------~gh~h~vS~V~f~P~gd~ilS~----srD~tik~W  220 (406)
T KOG0295|consen  154 FDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSL--------IGHEHGVSSVFFLPLGDHILSC----SRDNTIKAW  220 (406)
T ss_pred             eEEEEec-CccEEEecCCccchhheeHHHHHHHHHHh--------cCcccceeeEEEEecCCeeeec----ccccceeEE
Confidence            9999999 5999999999999999999863 333333        5899999999999999999999    999999999


Q ss_pred             ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203          306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ  385 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  385 (540)
                      ++.++   .++.++.+   |...|..++.+. ||.++++++.|.+|++|-+.++++   ...+  ..|.-+|.+++|-|.
T Consensus       221 e~~tg---~cv~t~~~---h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~---k~~l--R~hEh~vEci~wap~  288 (406)
T KOG0295|consen  221 ECDTG---YCVKTFPG---HSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQC---KAEL--REHEHPVECIAWAPE  288 (406)
T ss_pred             ecccc---eeEEeccC---chHhEEEEEecC-CeeEEEecCCCceEEEEEeccchh---hhhh--hccccceEEEEeccc
Confidence            99997   78888886   667899999999 999999999999999999999976   2333  348889999999663


Q ss_pred             ---------------CCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203          386 ---------------KQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL  449 (540)
Q Consensus       386 ---------------~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  449 (540)
                                     ++++.+++.|++|++||+.++.+++. ..+...+..++|+|.+   +||+++..|+++++||+++
T Consensus       289 ~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G---kyi~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  289 SSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG---KYILSCADDKTLRVWDLKN  365 (406)
T ss_pred             ccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC---eEEEEEecCCcEEEEEecc
Confidence                           35899999999999999999999887 4567889999999988   8999999999999999999


Q ss_pred             CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203          450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI  496 (540)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~  496 (540)
                      .++..       .+..|..-|+++.|+.+..++++|+-|..+++|.-
T Consensus       366 ~~cmk-------~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  366 LQCMK-------TLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ceeee-------ccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            88755       45678899999999999999999999999999964

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.8e-36  Score=272.43  Aligned_cols=290  Identities=19%  Similarity=0.306  Sum_probs=239.3

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--Cc--ceeeccccc--CCCCCCCCceeEEEecCCCeEEEEee
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SG--ASLLSTTDC--LSPKHRRWPEDIAWHPQGNSLFSAHT  294 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~--~~~~~~~~~--~~~~h~~~V~~~~~~~~~~~l~s~~~  294 (540)
                      .|+.+|.+.+|+|-...+|++|+.|-+.++|++...-  +.  ..+......  ........|++++|+.+|..||+|  
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG--  253 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG--  253 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe--
Confidence            3999999999999634499999999999999997511  11  111111100  001223679999999999999999  


Q ss_pred             cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203          295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                        +.||.+++|+...    ..+..+.   .|+++|.++.|+. .|++|++++.|+++.+||.-++..   .+.+  ..|.
T Consensus       254 --~~~G~~riw~~~G----~l~~tl~---~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~---~q~f--~~~s  318 (524)
T KOG0273|consen  254 --SEDGEARIWNKDG----NLISTLG---QHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTV---KQQF--EFHS  318 (524)
T ss_pred             --ecCcEEEEEecCc----hhhhhhh---ccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceE---EEee--eecc
Confidence              9999999999984    3345555   3889999999999 999999999999999999998875   2333  3377


Q ss_pred             cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      .+-.++.|-. ...+++++.|+.|+++.+....++.. ..+.+.+.++.|+|.+   .+|++++.|++++||.+..... 
T Consensus       319 ~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg---~LLaS~SdD~TlkiWs~~~~~~-  393 (524)
T KOG0273|consen  319 APALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG---SLLASCSDDGTLKIWSMGQSNS-  393 (524)
T ss_pred             CCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC---ceEEEecCCCeeEeeecCCCcc-
Confidence            7778889964 56789999999999999988777655 3467889999999988   7999999999999999876653 


Q ss_pred             eeeeccccccCccccCeEEEEEcCCC---------CEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC
Q 009203          454 IHAFGWKQESSESQSALINQSWSPDG---------LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP  524 (540)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~~~~sp~g---------~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~  524 (540)
                            ...+..|...|..+.|+|+|         ..|++++.|++|++||+..  +.++.+|..|..+|.+++|+|+|+
T Consensus       394 ------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--gv~i~~f~kH~~pVysvafS~~g~  465 (524)
T KOG0273|consen  394 ------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--GVPIHTLMKHQEPVYSVAFSPNGR  465 (524)
T ss_pred             ------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC--CceeEeeccCCCceEEEEecCCCc
Confidence                  22567899999999999975         4799999999999999998  899999999999999999999999


Q ss_pred             EEEEEEcCCcEEEEeC
Q 009203          525 LLISISSDLNIGLHKI  540 (540)
Q Consensus       525 ~l~s~~~dg~v~iw~l  540 (540)
                      ++++|+.||.|.||+.
T Consensus       466 ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  466 YLASGSLDGCVHIWST  481 (524)
T ss_pred             EEEecCCCCeeEeccc
Confidence            9999999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.3e-37  Score=268.04  Aligned_cols=273  Identities=19%  Similarity=0.222  Sum_probs=229.6

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      ..++|+|+.+..   ..+++|..|++|+|||..+..+...+        .||++.|.|+.|.  .+.|++|    +.|.+
T Consensus       196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L--------~GHtGSVLCLqyd--~rviisG----SSDsT  258 (499)
T KOG0281|consen  196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKIL--------TGHTGSVLCLQYD--ERVIVSG----SSDST  258 (499)
T ss_pred             cCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhh--------hcCCCcEEeeecc--ceEEEec----CCCce
Confidence            457899999963   46899999999999999998887777        6999999999985  4689998    99999


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      |++||++++   +++.++-   ||...|..+.|+   +.++++++.|.+|.+||+...........+  .+|...|+.+.
T Consensus       259 vrvWDv~tg---e~l~tli---hHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVL--vGHrAaVNvVd  327 (499)
T KOG0281|consen  259 VRVWDVNTG---EPLNTLI---HHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVL--VGHRAAVNVVD  327 (499)
T ss_pred             EEEEeccCC---chhhHHh---hhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHH--hhhhhheeeec
Confidence            999999997   4566655   478889999996   479999999999999999887632222222  56999999999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      |+  .+++++++.|.+|++|++.+++.+..... .-.+.++.+..     +++++|+.|.+|++||+..+.+..      
T Consensus       328 fd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~-----rlvVSGSSDntIRlwdi~~G~cLR------  394 (499)
T KOG0281|consen  328 FD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRD-----RLVVSGSSDNTIRLWDIECGACLR------  394 (499)
T ss_pred             cc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccC-----eEEEecCCCceEEEEeccccHHHH------
Confidence            96  47999999999999999999998877444 34444555543     799999999999999999888644      


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc-------ccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203          461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK-------PSQSIRAHQKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~-------~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                       .+.||..-|.++.|  |.+.+++|+.||.|+|||+..+...       ++.++..|.+.|..+.|  |...+++++.|.
T Consensus       395 -vLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd  469 (499)
T KOG0281|consen  395 -VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD  469 (499)
T ss_pred             -HHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence             56899999999999  6789999999999999999874322       56677789999999999  677899999999


Q ss_pred             cEEEEeC
Q 009203          534 NIGLHKI  540 (540)
Q Consensus       534 ~v~iw~l  540 (540)
                      +|.|||+
T Consensus       470 tILiWdF  476 (499)
T KOG0281|consen  470 TILIWDF  476 (499)
T ss_pred             eEEEEEc
Confidence            9999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.9e-35  Score=292.44  Aligned_cols=295  Identities=23%  Similarity=0.322  Sum_probs=247.0

Q ss_pred             EEEeccchhcccc-cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecCC
Q 009203          210 IHCHTSNHVSSLH-KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQG  286 (540)
Q Consensus       210 i~~~~~~~~~~~h-~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  286 (540)
                      ...|.....+.+| ...|+|+.|+|+ |.+|++++.|+.+++|+.....  ....+        .+|...|.+++|+|++
T Consensus       145 ~~~~~~~~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--------~~h~~~v~~~~fs~d~  215 (456)
T KOG0266|consen  145 SRVFSLEQTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLREL--------SGHTRGVSDVAFSPDG  215 (456)
T ss_pred             cccceeeeeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhccc--------cccccceeeeEECCCC
Confidence            3344444455554 789999999996 8889999999999999996655  22222        5899999999999999


Q ss_pred             CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc
Q 009203          287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK  366 (540)
Q Consensus       287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (540)
                      .+++++    +.|++|+|||+...  ..++..+.+   |...|++++|+| .++++++|+.|++|+|||++++++   ..
T Consensus       216 ~~l~s~----s~D~tiriwd~~~~--~~~~~~l~g---H~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~---~~  282 (456)
T KOG0266|consen  216 SYLLSG----SDDKTLRIWDLKDD--GRNLKTLKG---HSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGEC---VR  282 (456)
T ss_pred             cEEEEe----cCCceEEEeeccCC--CeEEEEecC---CCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeE---EE
Confidence            999999    99999999999433  366777776   778899999999 789999999999999999999875   33


Q ss_pred             eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCC--eeeeec-c-Cc-cEEEEeecCCCCCceEEEEEcCCCe
Q 009203          367 ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGR--ADFKHQ-I-ES-KCMSVLPNPCDFNLFMVQTGTPGRQ  441 (540)
Q Consensus       367 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~-~-~~-~~~~~~~~~~~~~~~~l~~~~~dg~  441 (540)
                      .+  .+|.+.|++++|++++++|++++.|+.|++||+.++.  +..... . .. .+..+.|+|++   .++++++.|+.
T Consensus       283 ~l--~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~---~~ll~~~~d~~  357 (456)
T KOG0266|consen  283 KL--KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG---KYLLSASLDRT  357 (456)
T ss_pred             ee--eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC---cEEEEecCCCe
Confidence            33  5699999999999999999999999999999999998  323322 1 12 57889999988   79999999999


Q ss_pred             EEEEECCCCcceeeeeccccccCcccc---CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-ccceeEE
Q 009203          442 LRLYDIRLRQTEIHAFGWKQESSESQS---ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QKRVFKA  517 (540)
Q Consensus       442 v~i~d~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l  517 (540)
                      +++||+.........       .+|..   .+.+..+++.|.++++|+.|+.|++||+.+  +..+..+.+| ...+..+
T Consensus       358 ~~~w~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s--~~~~~~l~~h~~~~~~~~  428 (456)
T KOG0266|consen  358 LKLWDLRSGKSVGTY-------TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS--GGILQRLEGHSKAAVSDL  428 (456)
T ss_pred             EEEEEccCCcceeee-------cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc--cchhhhhcCCCCCceecc
Confidence            999999988765543       33444   344556688999999999999999999998  7888899999 8899999


Q ss_pred             EEcCCCCEEEEEE--cCCcEEEEeC
Q 009203          518 VWHYSHPLLISIS--SDLNIGLHKI  540 (540)
Q Consensus       518 ~~s~~~~~l~s~~--~dg~v~iw~l  540 (540)
                      .|+|..+++++++  .|+.+++|..
T Consensus       429 ~~~~~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  429 SSHPTENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             ccCCCcCeeeecCcCCCceEEEecC
Confidence            9999999999998  7999999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8e-35  Score=245.24  Aligned_cols=294  Identities=14%  Similarity=0.278  Sum_probs=232.4

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc---------hh
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN---------HV  218 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~---------~~  218 (540)
                      .+.+++|...+-.++++|..                              ...+++.+.|+.|++|+..         .+
T Consensus         7 ~~~~~gh~~r~W~~awhp~~------------------------------g~ilAscg~Dk~vriw~~~~~~s~~ck~vl   56 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGK------------------------------GVILASCGTDKAVRIWSTSSGDSWTCKTVL   56 (312)
T ss_pred             EEeecCCCCcEEEEEeccCC------------------------------ceEEEeecCCceEEEEecCCCCcEEEEEec
Confidence            34567888888888888761                              1368899999999999654         22


Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      -.+|+..|.+++|+|. |++||+|+.|.++.||.-..++-  ......    .||...|.+++|+++|.+||++    +.
T Consensus        57 d~~hkrsVRsvAwsp~-g~~La~aSFD~t~~Iw~k~~~ef--ecv~~l----EGHEnEVK~Vaws~sG~~LATC----SR  125 (312)
T KOG0645|consen   57 DDGHKRSVRSVAWSPH-GRYLASASFDATVVIWKKEDGEF--ECVATL----EGHENEVKCVAWSASGNYLATC----SR  125 (312)
T ss_pred             cccchheeeeeeecCC-CcEEEEeeccceEEEeecCCCce--eEEeee----eccccceeEEEEcCCCCEEEEe----eC
Confidence            3689999999999995 99999999999999998775542  222221    6999999999999999999999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      |..|.||.+..+....+...++.   |...|..+.|+| ...+|++++.|.+|++|+-..+.. |. ......+|...|.
T Consensus       126 DKSVWiWe~deddEfec~aVL~~---HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~ddd-W~-c~~tl~g~~~TVW  199 (312)
T KOG0645|consen  126 DKSVWIWEIDEDDEFECIAVLQE---HTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDD-WE-CVQTLDGHENTVW  199 (312)
T ss_pred             CCeEEEEEecCCCcEEEEeeecc---ccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCC-ee-EEEEecCccceEE
Confidence            99999999998777788888886   667799999999 999999999999999998874221 11 1233367989999


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG  458 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  458 (540)
                      +++|++.|..|++++.|++++||-..+.-   .......+..+.|. .+    .|++++.|+.|++|.....-. ...+.
T Consensus       200 ~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~-~~----~IaS~ggD~~i~lf~~s~~~d-~p~~~  270 (312)
T KOG0645|consen  200 SLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD-NG----VIASGGGDDAIRLFKESDSPD-EPSWN  270 (312)
T ss_pred             EEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec-cc----ceEeccCCCEEEEEEecCCCC-CchHH
Confidence            99999999999999999999999976322   22333556667777 33    899999999999998774211 01111


Q ss_pred             c-ccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEecc
Q 009203          459 W-KQESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       459 ~-~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~  497 (540)
                      . ......|...|+++.|+|. .+.|++|+.||.|++|.+.
T Consensus       271 l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  271 LLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             HHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            1 1133568889999999995 6889999999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1e-34  Score=273.60  Aligned_cols=285  Identities=22%  Similarity=0.319  Sum_probs=240.6

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+.+|.++|++++|+|+ +.+|++++.||.|++|++.+++....+        ..|...+..+.|++++++|+++    +
T Consensus         4 ~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~----~   70 (289)
T cd00200           4 TLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTL--------KGHTGPVRDVAASADGTYLASG----S   70 (289)
T ss_pred             HhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEE--------ecCCcceeEEEECCCCCEEEEE----c
Confidence            46799999999999996 899999999999999999887644444        4777888999999999999999    8


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .++.|.+||+.++   .....+..   |...+.++.|++ ++.++++++.|+.|.+||+.+++.   ...+  ..|...+
T Consensus        71 ~~~~i~i~~~~~~---~~~~~~~~---~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~---~~~~--~~~~~~i  138 (289)
T cd00200          71 SDKTIRLWDLETG---ECVRTLTG---HTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKC---LTTL--RGHTDWV  138 (289)
T ss_pred             CCCeEEEEEcCcc---cceEEEec---cCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEE---EEEe--ccCCCcE
Confidence            9999999999975   23444443   456799999999 788888888899999999997654   2222  3588899


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      .+++|+|++.++++++.|+.|++||++.++.+..... ...+.++.++|++   ..+++++.++.|++||+.......  
T Consensus       139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~~~i~i~d~~~~~~~~--  213 (289)
T cd00200         139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---EKLLSSSSDGTIKLWDLSTGKCLG--  213 (289)
T ss_pred             EEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc---CEEEEecCCCcEEEEECCCCceec--
Confidence            9999999999999888899999999998777665443 3478899999987   578888889999999998755422  


Q ss_pred             eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203          457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG  536 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~  536 (540)
                           .+..|...+.++.|+|++.++++++.||.|++|++..  +.....+..|...|.+++|+|++++|++++.||.|+
T Consensus       214 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  286 (289)
T cd00200         214 -----TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT--GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR  286 (289)
T ss_pred             -----chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC--ceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence                 3346777999999999999999988899999999997  677777888999999999999999999999999999


Q ss_pred             EEe
Q 009203          537 LHK  539 (540)
Q Consensus       537 iw~  539 (540)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.6e-35  Score=280.13  Aligned_cols=318  Identities=17%  Similarity=0.232  Sum_probs=241.5

Q ss_pred             ceEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCC-cEEEEEeCCceEEEEEcCCCCC-cceeecccccCCC
Q 009203          199 PLVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNE-QLFVTSALDGVIRLWQLQSRGS-GASLLSTTDCLSP  271 (540)
Q Consensus       199 ~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~-~~l~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~  271 (540)
                      ..+++++.|+.+++||..     +.|+||.+.|.++.|+|+-. .+|++|..|++|++||+.+... ...+        .
T Consensus       118 ~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~--------~  189 (775)
T KOG0319|consen  118 TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM--------I  189 (775)
T ss_pred             ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH--------H
Confidence            568889999999999876     66999999999999999632 3689999999999999986543 3333        5


Q ss_pred             CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-----CCEEEEEe
Q 009203          272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-----NPCFATGG  346 (540)
Q Consensus       272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~s~~  346 (540)
                      .|...|++++|++|+..++++    +.|..+.+||+.+.+   ...++..    ...+-++.+.+ +     +.+++|++
T Consensus       190 ~H~S~vtsL~~~~d~~~~ls~----~RDkvi~vwd~~~~~---~l~~lp~----ye~~E~vv~l~-~~~~~~~~~~~TaG  257 (775)
T KOG0319|consen  190 LHKSAVTSLAFSEDSLELLSV----GRDKVIIVWDLVQYK---KLKTLPL----YESLESVVRLR-EELGGKGEYIITAG  257 (775)
T ss_pred             hhhhheeeeeeccCCceEEEe----ccCcEEEEeehhhhh---hhheech----hhheeeEEEec-hhcCCcceEEEEec
Confidence            899999999999999999999    999999999996542   2222221    12244455544 3     34555666


Q ss_pred             cCCcEEEEecCCCCCcc---------------------------------------------------------------
Q 009203          347 SDHAVVLWSERDAEDSW---------------------------------------------------------------  363 (540)
Q Consensus       347 ~dg~i~iwd~~~~~~~~---------------------------------------------------------------  363 (540)
                      .+|.+++||..++.+..                                                               
T Consensus       258 ~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~  337 (775)
T KOG0319|consen  258 GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEES  337 (775)
T ss_pred             CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccc
Confidence            56666666554443200                                                               


Q ss_pred             -----------------ccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee-----eeccCccEEEE
Q 009203          364 -----------------KPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF-----KHQIESKCMSV  421 (540)
Q Consensus       364 -----------------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~  421 (540)
                                       ........+|...|.++....+|.+|++|+.|.++++|.++++....     ...+...+.++
T Consensus       338 ~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgav  417 (775)
T KOG0319|consen  338 HLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAV  417 (775)
T ss_pred             eEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccccee
Confidence                             00011225699999999965678899999999999999985544321     13344566666


Q ss_pred             eecCCCCCceEEEEEcCCCeEEEEECCCCcc--eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203          422 LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT--EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS  499 (540)
Q Consensus       422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~  499 (540)
                      +++..+.  .++++++.|+++++|++...+.  ....+........|...|++++++|+.+++||||.|.+.+||++.. 
T Consensus       418 a~~~~~a--sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-  494 (775)
T KOG0319|consen  418 AGSKLGA--SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-  494 (775)
T ss_pred             eecccCc--cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-
Confidence            6655444  4899999999999999986221  1111212224457999999999999999999999999999999996 


Q ss_pred             CCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          500 ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       500 ~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                       .....++.+|...|+++.|+|..+.|+|+|.|++|+||.|
T Consensus       495 -~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i  534 (775)
T KOG0319|consen  495 -LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI  534 (775)
T ss_pred             -ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence             8899999999999999999999999999999999999985

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=6.4e-36  Score=265.42  Aligned_cols=267  Identities=16%  Similarity=0.273  Sum_probs=226.6

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      .+.+++..+.+.+|++.     .++..|..+|+++.|++ ++.++++|..+|.|++|+..-... ..+.       ..|.
T Consensus       110 RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnnV-k~~~-------ahh~  180 (464)
T KOG0284|consen  110 RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNNV-KIIQ-------AHHA  180 (464)
T ss_pred             eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhhh-HHhh-------Hhhh
Confidence            46678888999999775     67899999999999999 599999999999999999875432 2221       3455


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      ..|++++|+|+...++++    +.||+|+|||....+.   ...+.+   |.-.|.+++|+| ...+|++|+.|..|++|
T Consensus       181 eaIRdlafSpnDskF~t~----SdDg~ikiWdf~~~ke---e~vL~G---HgwdVksvdWHP-~kgLiasgskDnlVKlW  249 (464)
T KOG0284|consen  181 EAIRDLAFSPNDSKFLTC----SDDGTIKIWDFRMPKE---ERVLRG---HGWDVKSVDWHP-TKGLIASGSKDNLVKLW  249 (464)
T ss_pred             hhhheeccCCCCceeEEe----cCCCeEEEEeccCCch---hheecc---CCCCcceeccCC-ccceeEEccCCceeEee
Confidence            899999999999999999    9999999999987633   344454   667799999999 88899999999999999


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEE
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l  433 (540)
                      |.+++.|   +..+  .+|...|..+.|++++++|++++.|..+++||+++-+.++.+. +...+.++.|+|-..+  +|
T Consensus       250 DprSg~c---l~tl--h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~--lf  322 (464)
T KOG0284|consen  250 DPRSGSC---LATL--HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES--LF  322 (464)
T ss_pred             cCCCcch---hhhh--hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc--ce
Confidence            9999998   3333  4599999999999999999999999999999999777777655 6678899999998764  89


Q ss_pred             EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203          434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS  499 (540)
Q Consensus       434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~  499 (540)
                      .+|+.||.|..|.+...+....      ...+|...|++++|+|-|.+|++|+.|.++++|.-..+
T Consensus       323 tsgg~Dgsvvh~~v~~~~p~~~------i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp  382 (464)
T KOG0284|consen  323 TSGGSDGSVVHWVVGLEEPLGE------IPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP  382 (464)
T ss_pred             eeccCCCceEEEeccccccccC------CCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence            9999999999999984433221      23579999999999999999999999999999987653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.5e-33  Score=256.67  Aligned_cols=373  Identities=16%  Similarity=0.167  Sum_probs=276.2

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCC-ccEEEEeec---CCCceEEecccccccceEEecCCC-------------CeE
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSD-SEIVEVRDR---GTKRKFEQKEHRELIPLVRTSASP-------------ATI  210 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~d-------------~~i  210 (540)
                      ...-..|+..++-..+.|..-+.+++| .--+++|..   ....+.....-.+.|..+....+.             +.+
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence            344568999999999999988888433 223333332   222222222223333333332222             344


Q ss_pred             EEeccc---hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC
Q 009203          211 HCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN  287 (540)
Q Consensus       211 ~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  287 (540)
                      .+||.-   .-+.||...|++++|-|...-.++||+.|++|.+|.=.-    ..+..+.    ..|...|.|+.|+|||.
T Consensus       132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----FKFk~s~----r~HskFV~~VRysPDG~  203 (603)
T KOG0318|consen  132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----FKFKSSF----REHSKFVNCVRYSPDGS  203 (603)
T ss_pred             EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----eeeeecc----cccccceeeEEECCCCC
Confidence            556432   337899999999999997667899999999999997543    3333332    57889999999999999


Q ss_pred             eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccc--
Q 009203          288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKP--  365 (540)
Q Consensus       288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--  365 (540)
                      +++++    +.||.|.+||=.++   +.+..+.....|++.|.+++|+| |+..|++++.|.+++|||+.+..+..++  
T Consensus       204 ~Fat~----gsDgki~iyDGktg---e~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~  275 (603)
T KOG0318|consen  204 RFATA----GSDGKIYIYDGKTG---EKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPM  275 (603)
T ss_pred             eEEEe----cCCccEEEEcCCCc---cEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeec
Confidence            99999    99999999998887   56777776677899999999999 9999999999999999999876541110  


Q ss_pred             ------------------------------------ceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee
Q 009203          366 ------------------------------------KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD  409 (540)
Q Consensus       366 ------------------------------------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  409 (540)
                                                          ......+|...|+++..++++.+|++|+.||.|.-||..++..-
T Consensus       276 ~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  276 GSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD  355 (603)
T ss_pred             CCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence                                                01123579999999999999999999999999999999988764


Q ss_pred             ee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee---eec---------------------ccccc
Q 009203          410 FK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH---AFG---------------------WKQES  463 (540)
Q Consensus       410 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~---~~~---------------------~~~~~  463 (540)
                      ..  ..+...+.++..+..+    .+++.+.|.++++.++........   .++                     ....+
T Consensus       356 ~~~g~~h~nqI~~~~~~~~~----~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l  431 (603)
T KOG0318|consen  356 RLAGKGHTNQIKGMAASESG----ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLL  431 (603)
T ss_pred             ccccccccceEEEEeecCCC----cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEE
Confidence            33  4455667777766644    578888899999987743221000   000                     00001


Q ss_pred             C--------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203          464 S--------ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI  535 (540)
Q Consensus       464 ~--------~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v  535 (540)
                      .        .-.....+++++|++..++.|+.||.|+||.+...+......+..|.++|++++++||+.+||+|...+.|
T Consensus       432 ~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv  511 (603)
T KOG0318|consen  432 QDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV  511 (603)
T ss_pred             ecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence            1        11234678899999999999999999999999964344555667899999999999999999999999999


Q ss_pred             EEEeC
Q 009203          536 GLHKI  540 (540)
Q Consensus       536 ~iw~l  540 (540)
                      .+||+
T Consensus       512 v~yd~  516 (603)
T KOG0318|consen  512 VLYDV  516 (603)
T ss_pred             EEEEc
Confidence            99985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.9e-33  Score=267.84  Aligned_cols=357  Identities=13%  Similarity=0.153  Sum_probs=265.2

Q ss_pred             ecCCcceeeEEEEcccccccC--CCCccEEEEeecCCCce-EEecccccccceEEecCCC--------CeEEEeccc---
Q 009203          151 ASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRK-FEQKEHRELIPLVRTSASP--------ATIHCHTSN---  216 (540)
Q Consensus       151 ~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~d--------~~i~~~~~~---  216 (540)
                      .-.+.+.|+++++.|+..+..  .+.+...  +.....+. ...-.-...+.++.++++.        ..+.+|..-   
T Consensus        51 ~~e~~~NI~~ialSp~g~lllavdE~g~~~--lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~  128 (893)
T KOG0291|consen   51 PLETRYNITRIALSPDGTLLLAVDERGRAL--LVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEI  128 (893)
T ss_pred             EeecCCceEEEEeCCCceEEEEEcCCCcEE--EEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcch
Confidence            346778899999999977655  2222221  11111111 1111223456677777763        345667221   


Q ss_pred             ----------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC
Q 009203          217 ----------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG  286 (540)
Q Consensus       217 ----------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~  286 (540)
                                ..+.||-+.|+++.|+.| .++|++|+.|-+++||.+...+.......      .||.++|.++-|..+.
T Consensus       129 ~~~~~pFvl~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l------~gHkd~VvacfF~~~~  201 (893)
T KOG0291|consen  129 KNEFNPFVLHRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKNLFTYAL------NGHKDYVVACFFGANS  201 (893)
T ss_pred             hcccCcceEeeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccccceEec------cCCCcceEEEEeccCc
Confidence                      457899999999999986 99999999999999999988776333322      5999999999999999


Q ss_pred             CeEEEEeecCCCCCeEEEEecCCCCC---------------------ce-----e-----EEeecCCCCcccceeEEEEe
Q 009203          287 NSLFSAHTADSGDSQISVLNLNKTKG---------------------RA-----C-----VTFLDDKPHVKGIINSIIFL  335 (540)
Q Consensus       287 ~~l~s~~~~~~~d~~i~vwd~~~~~~---------------------~~-----~-----~~~~~~~~~~~~~v~~~~~~  335 (540)
                      ..|++.    +.||.+.+|.......                     .+     .     ...+.   .....|++.+|+
T Consensus       202 ~~l~tv----skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln---~~~~kvtaa~fH  274 (893)
T KOG0291|consen  202 LDLYTV----SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLN---QNSSKVTAAAFH  274 (893)
T ss_pred             ceEEEE----ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeec---ccccceeeeecc
Confidence            999999    9999999998771100                     00     0     00111   112446666666


Q ss_pred             CCCCCEEEEEecCCcE-------------------------------------------EEEecCCCCCccccceeeccc
Q 009203          336 PWENPCFATGGSDHAV-------------------------------------------VLWSERDAEDSWKPKALHRNL  372 (540)
Q Consensus       336 p~~~~~l~s~~~dg~i-------------------------------------------~iwd~~~~~~~~~~~~~~~~~  372 (540)
                      + ..++||+|-..|..                                           -||+.....     ..+..++
T Consensus       275 ~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-----YVlKQQg  348 (893)
T KOG0291|consen  275 K-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-----YVLKQQG  348 (893)
T ss_pred             C-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-----eeeeccc
Confidence            6 55555555554444                                           444444432     3455678


Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      |...+++++++|||+++++|+.||.|++||...+-|+.++ .+...+..+.|+..+   ..+++.+-||+|+.||+....
T Consensus       349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g---~~llssSLDGtVRAwDlkRYr  425 (893)
T KOG0291|consen  349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG---NVLLSSSLDGTVRAWDLKRYR  425 (893)
T ss_pred             cccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC---CEEEEeecCCeEEeeeecccc
Confidence            9999999999999999999999999999999999997775 456788889998877   789999999999999998766


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      +... +.     ........|++.+|.|..+++|+.|. .|.||++++  ++.+..+.||.++|.+++|+|++..|+|+|
T Consensus       426 NfRT-ft-----~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT--GqllDiLsGHEgPVs~l~f~~~~~~LaS~S  497 (893)
T KOG0291|consen  426 NFRT-FT-----SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT--GQLLDILSGHEGPVSGLSFSPDGSLLASGS  497 (893)
T ss_pred             eeee-ec-----CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec--CeeeehhcCCCCcceeeEEccccCeEEecc
Confidence            4332 21     12233568899999999999999875 799999999  899999999999999999999999999999


Q ss_pred             cCCcEEEEeC
Q 009203          531 SDLNIGLHKI  540 (540)
Q Consensus       531 ~dg~v~iw~l  540 (540)
                      .|.+|++||+
T Consensus       498 WDkTVRiW~i  507 (893)
T KOG0291|consen  498 WDKTVRIWDI  507 (893)
T ss_pred             ccceEEEEEe
Confidence            9999999986

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=4.6e-35  Score=257.75  Aligned_cols=291  Identities=22%  Similarity=0.320  Sum_probs=240.9

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC---eEEEEeecC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN---SLFSAHTAD  296 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~---~l~s~~~~~  296 (540)
                      .-|.+.|.+|...+   .++++|++||.+++||.. |+...++        .||.++|.+++|.-...   .|+++    
T Consensus       102 ~~hdDWVSsv~~~~---~~IltgsYDg~~riWd~~-Gk~~~~~--------~Ght~~ik~v~~v~~n~~~~~fvsa----  165 (423)
T KOG0313|consen  102 FLHDDWVSSVKGAS---KWILTGSYDGTSRIWDLK-GKSIKTI--------VGHTGPIKSVAWVIKNSSSCLFVSA----  165 (423)
T ss_pred             ccchhhhhhhcccC---ceEEEeecCCeeEEEecC-CceEEEE--------ecCCcceeeeEEEecCCccceEEEe----
Confidence            36889999999874   589999999999999986 5555555        59999999999865433   59999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC----------------
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE----------------  360 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~----------------  360 (540)
                      +.|.++++|.++.+..  .+.......+|...|.+++..+ ++..+++|+.|.+|.||+..+..                
T Consensus       166 s~Dqtl~Lw~~~~~~~--~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~  242 (423)
T KOG0313|consen  166 SMDQTLRLWKWNVGEN--KVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK  242 (423)
T ss_pred             cCCceEEEEEecCchh--hhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence            9999999999987632  2222222225788999999999 99999999999999999932211                


Q ss_pred             ----CccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEE
Q 009203          361 ----DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTG  436 (540)
Q Consensus       361 ----~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  436 (540)
                          ...+.......+|..+|.++.|++ ...+++++.|.+|+.||+.++.............++..+|..   .+|++|
T Consensus       243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~---~Ll~~g  318 (423)
T KOG0313|consen  243 REKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLS---KLLASG  318 (423)
T ss_pred             hhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeeccccc---ceeeec
Confidence                011223445578999999999997 788999999999999999999998888888889999999976   799999


Q ss_pred             cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccCCCCccccccccccccee
Q 009203          437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF  515 (540)
Q Consensus       437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~  515 (540)
                      +.|..+++||.+++.-.+..    +.+.+|.+.|.++.|+|... .|++|+.|+++++||+++. ..++..+.+|...|.
T Consensus       319 ssdr~irl~DPR~~~gs~v~----~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~-k~plydI~~h~DKvl  393 (423)
T KOG0313|consen  319 SSDRHIRLWDPRTGDGSVVS----QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST-KAPLYDIAGHNDKVL  393 (423)
T ss_pred             CCCCceeecCCCCCCCceeE----EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC-CCcceeeccCCceEE
Confidence            99999999999988654432    36789999999999999654 5889999999999999984 458999999999999


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          516 KAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       516 ~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ++.|+. +.+|++||.|.+|+|+.
T Consensus       394 ~vdW~~-~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  394 SVDWNE-GGLIVSGGADNKLRIFK  416 (423)
T ss_pred             EEeccC-CceEEeccCcceEEEec
Confidence            999974 56899999999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.2e-35  Score=283.59  Aligned_cols=271  Identities=15%  Similarity=0.188  Sum_probs=201.8

Q ss_pred             eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccC
Q 009203          150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKR  224 (540)
Q Consensus       150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~  224 (540)
                      +...-...++|+.+.+...+.+.+-....-..+.-.+.++..-.+...+..+...++|-.+.+.|..     .++.||++
T Consensus       373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G  452 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG  452 (707)
T ss_pred             EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence            3334456777888888777666221111101222233233322333444444444555444444322     45789999


Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      +|..+.|+|| .++|++++.|++||+|.+.+..+.-.+        .||..+|+++.|+|-|-++|++    +.|++-++
T Consensus       453 PVyg~sFsPd-~rfLlScSED~svRLWsl~t~s~~V~y--------~GH~~PVwdV~F~P~GyYFata----s~D~tArL  519 (707)
T KOG0263|consen  453 PVYGCSFSPD-RRFLLSCSEDSSVRLWSLDTWSCLVIY--------KGHLAPVWDVQFAPRGYYFATA----SHDQTARL  519 (707)
T ss_pred             ceeeeeeccc-ccceeeccCCcceeeeecccceeEEEe--------cCCCcceeeEEecCCceEEEec----CCCceeee
Confidence            9999999996 899999999999999999997766555        6999999999999999999999    99999999


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  384 (540)
                      |..+..   ...+.+.+   |-+.|.|+.|+| +..++++|+.|.+|++||+.+|..   .+.+  .+|.++|.+++|+|
T Consensus       520 Ws~d~~---~PlRifag---hlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~---VRiF--~GH~~~V~al~~Sp  587 (707)
T KOG0263|consen  520 WSTDHN---KPLRIFAG---HLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS---VRIF--TGHKGPVTALAFSP  587 (707)
T ss_pred             eecccC---Cchhhhcc---cccccceEEECC-cccccccCCCCceEEEEEcCCCcE---EEEe--cCCCCceEEEEEcC
Confidence            999875   44667765   677899999999 999999999999999999999985   3444  56999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          385 QKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       385 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      +|.+|++|+.||.|.+||+.++..+.. ..+.+.+.++.|+.++   ..|++|+.|++|++||+.
T Consensus       588 ~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg---~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  588 CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDG---NVLASGGADNSVRLWDLT  649 (707)
T ss_pred             CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCC---CEEEecCCCCeEEEEEch
Confidence            999999999999999999998876443 2234555566666555   456666666666666654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=6.4e-36  Score=248.76  Aligned_cols=283  Identities=16%  Similarity=0.169  Sum_probs=247.7

Q ss_pred             ccccCceEEEEEec--CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          220 SLHKRKLRSLSLNP--VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       220 ~~h~~~V~~l~~sp--d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .||+.+|..++|+|  ..|.+|++++.||.-.+-+-+++..+.++        .||.+.|++...+.+...-+++    +
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf--------eghkgavw~~~l~~na~~aasa----a   78 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF--------EGHKGAVWSATLNKNATRAASA----A   78 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee--------eccCcceeeeecCchhhhhhhh----c
Confidence            59999999999985  24899999999999999999999888888        6999999999999888888888    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .|-+-++||.-++.   .+..+.    |+-.|.+++|+. |.++|++|+.+..++|||++..+.    +.....+|.+.|
T Consensus        79 adftakvw~a~tgd---elhsf~----hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~A----pp~E~~ghtg~I  146 (334)
T KOG0278|consen   79 ADFTAKVWDAVTGD---ELHSFE----HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKA----PPKEISGHTGGI  146 (334)
T ss_pred             ccchhhhhhhhhhh---hhhhhh----hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCC----CchhhcCCCCcc
Confidence            99999999999883   355554    577899999999 999999999999999999998773    444457799999


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      ..+.|....+.|++.+.|++||+||.+++..+........+.++..++++    .+++-...+.|.+||..+....... 
T Consensus       147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG----~ilTia~gssV~Fwdaksf~~lKs~-  221 (334)
T KOG0278|consen  147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG----RILTIAYGSSVKFWDAKSFGLLKSY-  221 (334)
T ss_pred             eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC----CEEEEecCceeEEeccccccceeec-
Confidence            99999998899999999999999999999999999999999999999988    4555666789999999987643321 


Q ss_pred             ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc-cccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203          458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISISSDLNIG  536 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~~dg~v~  536 (540)
                             .-...|.+.+++|+..++++|++|+.++.||+.+  +..+..+ ++|-++|.|+.|+|||...++||.||+|+
T Consensus       222 -------k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~T--geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTir  292 (334)
T KOG0278|consen  222 -------KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNT--GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIR  292 (334)
T ss_pred             -------cCccccccccccCCCceEEecCcceEEEEEeccC--CceeeecccCCCCceEEEEECCCCceeeccCCCceEE
Confidence                   1234688999999999999999999999999999  5656665 89999999999999999999999999999


Q ss_pred             EEeC
Q 009203          537 LHKI  540 (540)
Q Consensus       537 iw~l  540 (540)
                      +|..
T Consensus       293 lWQt  296 (334)
T KOG0278|consen  293 LWQT  296 (334)
T ss_pred             EEEe
Confidence            9963

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.5e-33  Score=300.12  Aligned_cols=297  Identities=13%  Similarity=0.167  Sum_probs=226.7

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADS  297 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~  297 (540)
                      +.+|.+.|++++|+|+ +.+||+|+.|+.|+||+............ .......+...|.+++|++. +.+|+++    +
T Consensus       479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~las~----~  552 (793)
T PLN00181        479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIH-YPVVELASRSKLSGICWNSYIKSQVASS----N  552 (793)
T ss_pred             ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccc-cceEEecccCceeeEEeccCCCCEEEEE----e
Confidence            4569999999999995 89999999999999999864211000000 00000123467899999874 7799999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .||+|++||+.++   ..+..+.+   |.+.|++++|+|.++.+|++|+.||+|++||++++..   ...+.   +...|
T Consensus       553 ~Dg~v~lWd~~~~---~~~~~~~~---H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~---~~~~~---~~~~v  620 (793)
T PLN00181        553 FEGVVQVWDVARS---QLVTEMKE---HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS---IGTIK---TKANI  620 (793)
T ss_pred             CCCeEEEEECCCC---eEEEEecC---CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE---EEEEe---cCCCe
Confidence            9999999999875   44555554   6788999999975789999999999999999998764   22222   33578


Q ss_pred             eEEEec-cCCCEEEEEeCCCeEEEEECCCCCe-eee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          378 MGVAGM-QQKQIVLSAGADKRIIGFDAGVGRA-DFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       378 ~~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      .++.|+ ++|.+|++|+.||.|++||++++.. +.. ..+...+..+.|.+.    .++++++.|++|++||+.......
T Consensus       621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~----~~lvs~s~D~~ikiWd~~~~~~~~  696 (793)
T PLN00181        621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS----STLVSSSTDNTLKLWDLSMSISGI  696 (793)
T ss_pred             EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCC----CEEEEEECCCEEEEEeCCCCcccc
Confidence            999995 5799999999999999999987653 322 344567788888643    489999999999999997532100


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc-------------cccccccceeEEEEcC
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ-------------SIRAHQKRVFKAVWHY  521 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~-------------~~~~h~~~i~~l~~s~  521 (540)
                      . ......+.+|...+.+++|+|++.+|++|+.||.|++|+....  .++.             ....|...|.+++|+|
T Consensus       697 ~-~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        697 N-ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP--MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG  773 (793)
T ss_pred             C-CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC--CceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence            0 0011245789999999999999999999999999999998652  2111             1223556799999999


Q ss_pred             CCCEEEEEEcCCcEEEEeC
Q 009203          522 SHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       522 ~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++.+|++|+.||.|+||++
T Consensus       774 ~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        774 QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCeEEEecCCCcEEEEec
Confidence            9999999999999999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-33  Score=233.17  Aligned_cols=283  Identities=16%  Similarity=0.149  Sum_probs=238.1

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +++..|+++|.++.|+-| |++.++++.|.+|++|+...+.++.++        .+|...|..++.+.|+..|++|    
T Consensus        11 ~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktY--------sghG~EVlD~~~s~Dnskf~s~----   77 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTY--------SGHGHEVLDAALSSDNSKFASC----   77 (307)
T ss_pred             eeecccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeee--------cCCCceeeeccccccccccccC----
Confidence            456899999999999996 999999999999999999999888888        6899999999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|..|.+||+++|   +..+.+.+   |.+.|+.++|+. +...+++|+.|.++++||-+.... ..++.+  ....+.
T Consensus        78 GgDk~v~vwDV~TG---kv~Rr~rg---H~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~-ePiQil--dea~D~  147 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTG---KVDRRFRG---HLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSF-EPIQIL--DEAKDG  147 (307)
T ss_pred             CCCceEEEEEcccC---eeeeeccc---ccceeeEEEecC-cceEEEeccccceeEEEEcccCCC-Cccchh--hhhcCc
Confidence            99999999999998   55777776   778999999999 999999999999999999987653 112222  336678


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      |.++..+  +..|++|+.||+++.||++.|.. .....+.++.++.|++++   ...++++.|+++++.|-.+++.... 
T Consensus       148 V~Si~v~--~heIvaGS~DGtvRtydiR~G~l-~sDy~g~pit~vs~s~d~---nc~La~~l~stlrLlDk~tGklL~s-  220 (307)
T KOG0316|consen  148 VSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL-SSDYFGHPITSVSFSKDG---NCSLASSLDSTLRLLDKETGKLLKS-  220 (307)
T ss_pred             eeEEEec--ccEEEeeccCCcEEEEEeeccee-ehhhcCCcceeEEecCCC---CEEEEeeccceeeecccchhHHHHH-
Confidence            9999986  57899999999999999998875 344566788999999988   6899999999999999999886543 


Q ss_pred             eccccccCccccC--eEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccc-eeEEEEcCCCCEEEEEEcCC
Q 009203          457 FGWKQESSESQSA--LINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKR-VFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       457 ~~~~~~~~~~~~~--v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~-i~~l~~s~~~~~l~s~~~dg  533 (540)
                            .++|.+.  -...+++.....+++|++||.|++||+..  ...+..+..|... |.++.++|....|+++.. +
T Consensus       221 ------YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd--~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~  291 (307)
T KOG0316|consen  221 ------YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD--ETQISKLSVVSTVIVTDLSCHPTMDDFITATG-H  291 (307)
T ss_pred             ------hcccccceeeeeeeecccceeEEeccCCceEEEEEecc--ceeeeeeccCCceeEEeeecccCccceeEecC-C
Confidence                  3455543  34456777788999999999999999997  6778888877776 899999999887777753 4


Q ss_pred             cEEEE
Q 009203          534 NIGLH  538 (540)
Q Consensus       534 ~v~iw  538 (540)
                      .+..|
T Consensus       292 ~~~~~  296 (307)
T KOG0316|consen  292 GDLFW  296 (307)
T ss_pred             ceece
Confidence            44555

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=4.9e-35  Score=260.26  Aligned_cols=288  Identities=18%  Similarity=0.249  Sum_probs=238.6

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+..|.+.|..+.|-+ +...|++|+.|..|++|++...+  ..+....    .|-.+.|+++.|.+++.+++++    +
T Consensus       170 ~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tL----aGs~g~it~~d~d~~~~~~iAa----s  238 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEK--SELISTL----AGSLGNITSIDFDSDNKHVIAA----S  238 (459)
T ss_pred             hhhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccch--hhhhhhh----hccCCCcceeeecCCCceEEee----c
Confidence            4678999999999999 47899999999999999998766  2222222    4666889999999999999998    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .|+.+++|+++..   ....++.+   |.+.|+++.|.. ....+++|+.|.+|++||+....|...+.      ..+.+
T Consensus       239 ~d~~~r~Wnvd~~---r~~~TLsG---HtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l------~~S~c  305 (459)
T KOG0288|consen  239 NDKNLRLWNVDSL---RLRHTLSG---HTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL------PGSQC  305 (459)
T ss_pred             CCCceeeeeccch---hhhhhhcc---cccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc------ccccc
Confidence            9999999999975   44666665   789999999987 55569999999999999999987633222      34567


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      .+|+.+  +..+++|..|+.|++||.+...+......++.+.++..++++   ..+.+++.|.++.+.|+++.+... .+
T Consensus       306 nDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g---~~lLsssRDdtl~viDlRt~eI~~-~~  379 (459)
T KOG0288|consen  306 NDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG---LELLSSSRDDTLKVIDLRTKEIRQ-TF  379 (459)
T ss_pred             cceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC---eEEeeecCCCceeeeecccccEEE-Ee
Confidence            777776  577899999999999999999999999999999999999988   678888999999999999877433 22


Q ss_pred             ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc--ceeEEEEcCCCCEEEEEEcCCcE
Q 009203          458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK--RVFKAVWHYSHPLLISISSDLNI  535 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~--~i~~l~~s~~~~~l~s~~~dg~v  535 (540)
                      .......+|  ..+.+.|||++.|+++|+.||.|+||++.+  +++...+.....  .|++++|+|.|..|++++.++.+
T Consensus       380 sA~g~k~as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~t--gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v  455 (459)
T KOG0288|consen  380 SAEGFKCAS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFT--GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV  455 (459)
T ss_pred             ecccccccc--ccceeEECCCCceeeeccCCCcEEEEEccC--ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence            222233344  388999999999999999999999999998  666666654333  69999999999999999999999


Q ss_pred             EEEe
Q 009203          536 GLHK  539 (540)
Q Consensus       536 ~iw~  539 (540)
                      .+|.
T Consensus       456 ~lW~  459 (459)
T KOG0288|consen  456 TLWT  459 (459)
T ss_pred             EecC
Confidence            9994

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=250.16  Aligned_cols=295  Identities=19%  Similarity=0.209  Sum_probs=249.9

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      .|...-+.|..|+|| |++|++|+.||.|.+||..+++....+.........-+.++|.|+.|+.|...|++|    +.|
T Consensus       210 Fg~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG----sqD  284 (508)
T KOG0275|consen  210 FGQKSHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG----SQD  284 (508)
T ss_pred             cccccchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc----CcC
Confidence            466778999999996 999999999999999999999876655443333334688999999999999999999    999


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      |.|++|.+.+|   .|++.++.  .|...|+|+.|+. |+..+++++.|.+++|..+.+|++   .+.+  .+|++.|+.
T Consensus       285 GkIKvWri~tG---~ClRrFdr--AHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~---LKEf--rGHsSyvn~  353 (508)
T KOG0275|consen  285 GKIKVWRIETG---QCLRRFDR--AHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKC---LKEF--RGHSSYVNE  353 (508)
T ss_pred             CcEEEEEEecc---hHHHHhhh--hhccCeeEEEEcc-CcchhhcccccceEEEeccccchh---HHHh--cCccccccc
Confidence            99999999998   66776663  4667799999999 999999999999999999999987   3433  579999999


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      ..|.++|..+++++.||+|++|+..+++++..+..   +..+.++..-|.++.  .++++...++|++.++...  ....
T Consensus       354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe--h~iVCNrsntv~imn~qGQ--vVrs  429 (508)
T KOG0275|consen  354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE--HFIVCNRSNTVYIMNMQGQ--VVRS  429 (508)
T ss_pred             eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc--eEEEEcCCCeEEEEeccce--EEee
Confidence            99999999999999999999999999999776543   456777887777754  6778888899999998732  3333


Q ss_pred             eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203          457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG  536 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~  536 (540)
                      +.   ..+...+...+.+.||.|.++.+.++|+.++.|.+.+  ++...++..|...|-.++.+|..+.|++-+.||.++
T Consensus       430 fs---SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s--G~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllK  504 (508)
T KOG0275|consen  430 FS---SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS--GKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLK  504 (508)
T ss_pred             ec---cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec--CceeeeeecccccccccccCcccchhhhhcccchhh
Confidence            22   1223345677888999999999999999999999998  788889999999999999999999999999999999


Q ss_pred             EEe
Q 009203          537 LHK  539 (540)
Q Consensus       537 iw~  539 (540)
                      +|.
T Consensus       505 LWk  507 (508)
T KOG0275|consen  505 LWK  507 (508)
T ss_pred             hcC
Confidence            996

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-33  Score=262.50  Aligned_cols=287  Identities=17%  Similarity=0.197  Sum_probs=247.9

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      ..+..|+..|.++.|+|. ..+++++-.+|.|.|||.++...+..+.        -...+|.++.|-+-.+++++|    
T Consensus         7 rk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfe--------V~~~PvRa~kfiaRknWiv~G----   73 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFE--------VSEVPVRAAKFIARKNWIVTG----   73 (794)
T ss_pred             hHhhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeee--------ecccchhhheeeeccceEEEe----
Confidence            345668999999999995 8999999999999999999987776663        334678999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|..|+||+.+++   ..+..+..   |.+.|.+++.+| ...++++++.|-+|++||.+..=.    ......+|...
T Consensus        74 sDD~~IrVfnynt~---ekV~~FeA---H~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa----~~qtfeGH~Hy  142 (794)
T KOG0276|consen   74 SDDMQIRVFNYNTG---EKVKTFEA---HSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWA----CEQTFEGHEHY  142 (794)
T ss_pred             cCCceEEEEecccc---eeeEEeec---cccceeeeeecC-CCCeEEecCCccEEEEeeccCcee----eeeEEcCcceE
Confidence            99999999999997   56888876   788999999999 888999999999999999987642    33344789999


Q ss_pred             eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      |++++|+| |.+.+++++.|++|++|.+....+.++.. +...+.++.+-+.+.. .+|++|+.|.+|+|||..+..+..
T Consensus       143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdk-pylIsgaDD~tiKvWDyQtk~CV~  221 (794)
T KOG0276|consen  143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDK-PYLISGADDLTIKVWDYQTKSCVQ  221 (794)
T ss_pred             EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCc-ceEEecCCCceEEEeecchHHHHH
Confidence            99999999 66899999999999999999888766644 4466777777665544 599999999999999999988744


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCc
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLN  534 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~  534 (540)
                             ++.||...|..+.|+|.-.++++|++||+++||+..+  .+...++.....+|++++-.+.+..++.|.++|.
T Consensus       222 -------TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T--y~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~  292 (794)
T KOG0276|consen  222 -------TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT--YKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGS  292 (794)
T ss_pred             -------HhhcccccceEEEecCCCcEEEEecCCccEEEecCcc--eehhhhhhcCCceEEEEeecCCCCeEEEeccCCc
Confidence                   7789999999999999999999999999999999988  6777777777889999999999888999988887


Q ss_pred             EEE
Q 009203          535 IGL  537 (540)
Q Consensus       535 v~i  537 (540)
                      |.|
T Consensus       293 i~v  295 (794)
T KOG0276|consen  293 VTV  295 (794)
T ss_pred             EEE
Confidence            754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.5e-33  Score=239.61  Aligned_cols=280  Identities=16%  Similarity=0.186  Sum_probs=238.2

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc------hhccc
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN------HVSSL  221 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~------~~~~~  221 (540)
                      +..+++|.+.|+.+.|.|..+                               ++++++.|+.|.+|+..      .+++|
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs-------------------------------~~aSgG~Dr~I~LWnv~gdceN~~~lkg   88 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGS-------------------------------CFASGGSDRAIVLWNVYGDCENFWVLKG   88 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCC-------------------------------eEeecCCcceEEEEeccccccceeeecc
Confidence            456689999999999999864                               79999999999999632      56899


Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCe-EEEEeecCCCCC
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNS-LFSAHTADSGDS  300 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~s~~~~~~~d~  300 (540)
                      |++.|..+.|.+| +..|++++.|.+|+.||+++++..+..        .+|..-|+++.-+.-|.. +.++    +.|+
T Consensus        89 HsgAVM~l~~~~d-~s~i~S~gtDk~v~~wD~~tG~~~rk~--------k~h~~~vNs~~p~rrg~~lv~Sg----sdD~  155 (338)
T KOG0265|consen   89 HSGAVMELHGMRD-GSHILSCGTDKTVRGWDAETGKRIRKH--------KGHTSFVNSLDPSRRGPQLVCSG----SDDG  155 (338)
T ss_pred             ccceeEeeeeccC-CCEEEEecCCceEEEEecccceeeehh--------ccccceeeecCccccCCeEEEec----CCCc
Confidence            9999999999996 999999999999999999999988877        688888998885555554 4555    9999


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                      ++++||+++.   .+++++..    +..++++.|.. .+..+.+|+-|+.|++||++....     .....+|.+.|+.+
T Consensus       156 t~kl~D~R~k---~~~~t~~~----kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~-----~~~lsGh~DtIt~l  222 (338)
T KOG0265|consen  156 TLKLWDIRKK---EAIKTFEN----KYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDG-----LYTLSGHADTITGL  222 (338)
T ss_pred             eEEEEeeccc---chhhcccc----ceeEEEEEecc-cccceeeccccCceeeeccccCcc-----eEEeecccCceeeE
Confidence            9999999974   55666654    45699999998 899999999999999999998875     23336799999999


Q ss_pred             EeccCCCEEEEEeCCCeEEEEECCCCC----eeee-----eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          381 AGMQQKQIVLSAGADKRIIGFDAGVGR----ADFK-----HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      ..+++|.++.+-+.|.++++||++--.    ++..     +..+...+...|+|++   ..+.+|+.|..+++||.....
T Consensus       223 sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~---~~i~ags~dr~vyvwd~~~r~  299 (338)
T KOG0265|consen  223 SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG---TKITAGSADRFVYVWDTTSRR  299 (338)
T ss_pred             EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC---CccccccccceEEEeeccccc
Confidence            999999999999999999999998522    2332     3445677888999987   789999999999999998766


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLF  494 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iw  494 (540)
                      ...       .+++|.+.|.+++|+|...+|.+++.|.+|++=
T Consensus       300 ~ly-------klpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  300 ILY-------KLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             EEE-------EcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence            433       568999999999999999999999999999863

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-33  Score=273.31  Aligned_cols=304  Identities=17%  Similarity=0.246  Sum_probs=237.2

Q ss_pred             cceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccCceEEE
Q 009203          155 AHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKRKLRSL  229 (540)
Q Consensus       155 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l  229 (540)
                      +..|..++|+|++|                               -+-++-..+.|++||..     +-+.+|.++|..+
T Consensus         9 SsRvKglsFHP~rP-------------------------------wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv   57 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRP-------------------------------WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGV   57 (1202)
T ss_pred             cccccceecCCCCC-------------------------------EEEEeecCceeeeehhhhhhHHhhhhccCCcccee
Confidence            34677889999988                               24445557899999887     3378999999999


Q ss_pred             EEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC
Q 009203          230 SLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK  309 (540)
Q Consensus       230 ~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~  309 (540)
                      +|+|+ +.++++|+.|..|+||+....+++.++        .||.+.|..+.|++.-.+|+++    +.|.+|+||++.+
T Consensus        58 ~FH~~-qplFVSGGDDykIkVWnYk~rrclftL--------~GHlDYVRt~~FHheyPWIlSA----SDDQTIrIWNwqs  124 (1202)
T KOG0292|consen   58 DFHPT-QPLFVSGGDDYKIKVWNYKTRRCLFTL--------LGHLDYVRTVFFHHEYPWILSA----SDDQTIRIWNWQS  124 (1202)
T ss_pred             eecCC-CCeEEecCCccEEEEEecccceehhhh--------ccccceeEEeeccCCCceEEEc----cCCCeEEEEeccC
Confidence            99995 999999999999999999999998888        6999999999999999999999    9999999999998


Q ss_pred             CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEE
Q 009203          310 TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV  389 (540)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  389 (540)
                      .   .++..+.+   |.-.|.|..|+| ..++++++|-|.+|++||+..-..    .      +..+. ++.=...+..+
T Consensus       125 r---~~iavltG---HnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRk----k------~~~pg-~~e~~~~~~~~  186 (1202)
T KOG0292|consen  125 R---KCIAVLTG---HNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRK----K------NKAPG-SLEDQMRGQQG  186 (1202)
T ss_pred             C---ceEEEEec---CceEEEeeccCC-ccceEEEecccceEEEEeecchhc----c------CCCCC-Cchhhhhcccc
Confidence            5   78999987   555799999999 999999999999999999986442    1      11111 11100111111


Q ss_pred             ---EEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc
Q 009203          390 ---LSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES  466 (540)
Q Consensus       390 ---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  466 (540)
                         +.|+.|-.|+..         ...++..+..++|+|.-   -++++|+.|..|++|.+...+.  ..   ..+..+|
T Consensus       187 ~~dLfg~~DaVVK~V---------LEGHDRGVNwaAfhpTl---pliVSG~DDRqVKlWrmnetKa--WE---vDtcrgH  249 (1202)
T KOG0292|consen  187 NSDLFGQTDAVVKHV---------LEGHDRGVNWAAFHPTL---PLIVSGADDRQVKLWRMNETKA--WE---VDTCRGH  249 (1202)
T ss_pred             chhhcCCcCeeeeee---------ecccccccceEEecCCc---ceEEecCCcceeeEEEeccccc--ee---ehhhhcc
Confidence               223334333211         12233456677788765   4888899999999998874332  11   2256799


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          467 QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       467 ~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .+.|.++-|+|....+++.++|++|+|||++.  .+.+.+++...+.-+.++-+|..+++++| .|+-+.||.|
T Consensus       250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~k--Rt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkl  320 (1202)
T KOG0292|consen  250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK--RTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKL  320 (1202)
T ss_pred             cCCcceEEecCccceeEecCCCccEEEEeccc--ccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEE
Confidence            99999999999999999999999999999998  78899998778899999999999977766 5555666653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=8.3e-35  Score=253.12  Aligned_cols=261  Identities=16%  Similarity=0.245  Sum_probs=220.6

Q ss_pred             EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR  275 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~  275 (540)
                      +.++..|.+|++||..     .++.||++.|.|+.|.   .+.|++|+.|.+|+|||+++++.+.++        -+|.+
T Consensus       210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tl--------ihHce  278 (499)
T KOG0281|consen  210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTL--------IHHCE  278 (499)
T ss_pred             hhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHH--------hhhcc
Confidence            4578889999999876     6789999999999996   459999999999999999999998888        58889


Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      .|..+.|+.  .+++++    +.|.++.+||+.+.....+...+.+   |...|+.+.|+   .+++++++.|.+|++|+
T Consensus       279 aVLhlrf~n--g~mvtc----SkDrsiaVWdm~sps~it~rrVLvG---HrAaVNvVdfd---~kyIVsASgDRTikvW~  346 (499)
T KOG0281|consen  279 AVLHLRFSN--GYMVTC----SKDRSIAVWDMASPTDITLRRVLVG---HRAAVNVVDFD---DKYIVSASGDRTIKVWS  346 (499)
T ss_pred             eeEEEEEeC--CEEEEe----cCCceeEEEeccCchHHHHHHHHhh---hhhheeeeccc---cceEEEecCCceEEEEe
Confidence            999999974  589999    9999999999998765555566665   77889999995   47999999999999999


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEE
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~  434 (540)
                      +.++++   ..++  .+|...|.|+.+  .|+++++|+.|.+|++||+..|.++...+. +.-+.++.|+.     ..++
T Consensus       347 ~st~ef---vRtl--~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~-----krIV  414 (499)
T KOG0281|consen  347 TSTCEF---VRTL--NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-----KRIV  414 (499)
T ss_pred             ccceee---ehhh--hcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC-----ceee
Confidence            999986   4444  569999999998  489999999999999999999999877544 45667888876     5799


Q ss_pred             EEcCCCeEEEEECCCCcceeeeec--cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFG--WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      +|..||+|++||+.....+...-+  ....+..|.+.|..+.|  |...+++++.|.+|.|||+.+
T Consensus       415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~  478 (499)
T KOG0281|consen  415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN  478 (499)
T ss_pred             eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence            999999999999987654322111  12345678999999999  667899999999999999987

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.4e-33  Score=243.64  Aligned_cols=291  Identities=15%  Similarity=0.152  Sum_probs=232.2

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +.|..|+++|.+++.+| +.+++|||+.|....||++.++.....+        .+|++.|+++.|+.+|.+||+|    
T Consensus        58 ~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~el--------tgHKDSVt~~~FshdgtlLATG----  124 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGEL--------TGHKDSVTCCSFSHDGTLLATG----  124 (399)
T ss_pred             eehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEe--------cCCCCceEEEEEccCceEEEec----
Confidence            34689999999999999 6999999999999999999999866666        7999999999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      ..+|.|+||+..++..  ......    .-+.+.-+.|+| .+..|+.|+.||.+.+|.+..+..   .+.+  .+|..+
T Consensus       125 dmsG~v~v~~~stg~~--~~~~~~----e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~---~kv~--~Gh~~~  192 (399)
T KOG0296|consen  125 DMSGKVLVFKVSTGGE--QWKLDQ----EVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQAL---CKVM--SGHNSP  192 (399)
T ss_pred             CCCccEEEEEcccCce--EEEeec----ccCceEEEEecc-cccEEEeecCCCcEEEEECCCcce---eeEe--cCCCCC
Confidence            9999999999998743  222221    134588899999 999999999999999999998532   3444  569999


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc--CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      +++=.|.|+|+.++++..||+|++||+.++.++.....  +....++.++..+   ..++.|+.++.+++-+..+++...
T Consensus       193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~---~~~~~g~~e~~~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG---STLTKGNSEGVACGVNNGSGKVVN  269 (399)
T ss_pred             cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc---ceeEeccCCccEEEEccccceEEE
Confidence            99999999999999999999999999999998776442  2222333333333   578889999999988888776544


Q ss_pred             eeec-cccccCccccCeEEE---EEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          455 HAFG-WKQESSESQSALINQ---SWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       455 ~~~~-~~~~~~~~~~~v~~~---~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ...+ .......+...+.++   .|+..-.+.|+|+-||+|.|||+..   ..++..-.|..+|+.+.|-+ ..+|++++
T Consensus       270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~---~~~R~~c~he~~V~~l~w~~-t~~l~t~c  345 (399)
T KOG0296|consen  270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA---STLRHICEHEDGVTKLKWLN-TDYLLTAC  345 (399)
T ss_pred             ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc---chhheeccCCCceEEEEEcC-cchheeec
Confidence            3321 111222344444454   4555667889999999999999996   33445556888999999988 78999999


Q ss_pred             cCCcEEEEe
Q 009203          531 SDLNIGLHK  539 (540)
Q Consensus       531 ~dg~v~iw~  539 (540)
                      .||.|+.||
T Consensus       346 ~~g~v~~wD  354 (399)
T KOG0296|consen  346 ANGKVRQWD  354 (399)
T ss_pred             cCceEEeee
Confidence            999999998

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.7e-34  Score=252.63  Aligned_cols=280  Identities=20%  Similarity=0.300  Sum_probs=231.3

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      |.||.++|.|++=+|..-..+|+|+.||.|+|||+....+..++        ..|.+.|..+++..  ..++++    +.
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f--------~AH~G~V~Gi~v~~--~~~~tv----gd  127 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF--------KAHEGLVRGICVTQ--TSFFTV----GD  127 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee--------ecccCceeeEEecc--cceEEe----cC
Confidence            57999999999999953378999999999999999998888888        58899999999987  567777    89


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      |.+|+.|.++..    ...++.+    .+.+..+.-+. .++.++|+|.  .|.|||.....+   ...+..  ..+.|.
T Consensus       128 DKtvK~wk~~~~----p~~tilg----~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~P---v~smsw--G~Dti~  191 (433)
T KOG0268|consen  128 DKTVKQWKIDGP----PLHTILG----KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNP---VSSMSW--GADSIS  191 (433)
T ss_pred             CcceeeeeccCC----cceeeec----ccccccccccc-ccccccccCc--eeeecccccCCc---cceeec--CCCcee
Confidence            999999998842    3444443    45577787776 7788999886  499999987664   333332  557799


Q ss_pred             EEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          379 GVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       379 ~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      ++.|+|.. ..|++|+.|+.|.+||++.+.++...........++|+|..   ..+++|+.|..++.||++....+..  
T Consensus       192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea---fnF~~a~ED~nlY~~DmR~l~~p~~--  266 (433)
T KOG0268|consen  192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA---FNFVAANEDHNLYTYDMRNLSRPLN--  266 (433)
T ss_pred             EEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccc---cceeeccccccceehhhhhhcccch--
Confidence            99999965 56677779999999999999999888888888999999955   5789999999999999998776554  


Q ss_pred             ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc-ccccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203          458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK-PSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG  536 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~  536 (540)
                          ...+|.+.|.+++|||.|+-+++|+.|.+|+||.++.+..+ ...+-  -...|.++.||.|.+++++||+|+.|+
T Consensus       267 ----v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvR  340 (433)
T KOG0268|consen  267 ----VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNVR  340 (433)
T ss_pred             ----hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCccee
Confidence                45789999999999999999999999999999999863111 11111  123599999999999999999999999


Q ss_pred             EEe
Q 009203          537 LHK  539 (540)
Q Consensus       537 iw~  539 (540)
                      +|+
T Consensus       341 lWk  343 (433)
T KOG0268|consen  341 LWK  343 (433)
T ss_pred             eee
Confidence            996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2e-31  Score=253.97  Aligned_cols=358  Identities=16%  Similarity=0.237  Sum_probs=291.2

Q ss_pred             eeeecCCcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccc---------eEEecCCCCeEEEeccc
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIP---------LVRTSASPATIHCHTSN  216 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~~d~~i~~~~~~  216 (540)
                      .-...||..+|+++.+.......+  +-|..++-.-..+-...|.+.+|...|.         .+.+.+.|..|++|+..
T Consensus       100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~  179 (888)
T KOG0306|consen  100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE  179 (888)
T ss_pred             eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence            344568999999999998876666  5555555334456666778888877663         35677889999999886


Q ss_pred             -----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC------------------------Ccc-------
Q 009203          217 -----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG------------------------SGA-------  260 (540)
Q Consensus       217 -----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~------------------------~~~-------  260 (540)
                           .+.-+|.+.|+++++.+   ..+++++.|+.+++|++....                        .+.       
T Consensus       180 tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~  256 (888)
T KOG0306|consen  180 TQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSD  256 (888)
T ss_pred             cceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcc
Confidence                 33568899999999986   478999999999999982100                        000       


Q ss_pred             e-------------------------------------------------------------------------------
Q 009203          261 S-------------------------------------------------------------------------------  261 (540)
Q Consensus       261 ~-------------------------------------------------------------------------------  261 (540)
                      .                                                                               
T Consensus       257 r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~  336 (888)
T KOG0306|consen  257 RFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTEN  336 (888)
T ss_pred             cEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcce
Confidence            0                                                                               


Q ss_pred             -e-------------ecccc----------cCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203          262 -L-------------LSTTD----------CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT  317 (540)
Q Consensus       262 -~-------------~~~~~----------~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~  317 (540)
                       +             ..+..          ....||...|.+++++.+...++++     ..+.|.+|+..+.   +|++
T Consensus       337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-----a~~SikiWn~~t~---kciR  408 (888)
T KOG0306|consen  337 TLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-----AGESIKIWNRDTL---KCIR  408 (888)
T ss_pred             eEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-----CCCcEEEEEccCc---ceeE
Confidence             0             00000          0114788999999999998888884     7889999999986   7788


Q ss_pred             eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCe
Q 009203          318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKR  397 (540)
Q Consensus       318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~  397 (540)
                      ++..     +.+.+..|.| .+.++++|...|.+.+||+.....   ...+  ..|.+.|.+++.+||+..+++|+.|.+
T Consensus       409 Ti~~-----~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l---~Eti--~AHdgaIWsi~~~pD~~g~vT~saDkt  477 (888)
T KOG0306|consen  409 TITC-----GYILASKFVP-GDRYIVLGTKNGELQVFDLASASL---VETI--RAHDGAIWSISLSPDNKGFVTGSADKT  477 (888)
T ss_pred             Eecc-----ccEEEEEecC-CCceEEEeccCCceEEEEeehhhh---hhhh--hccccceeeeeecCCCCceEEecCCcE
Confidence            8874     5799999999 889999999999999999998875   2333  469999999999999999999999999


Q ss_pred             EEEEECCC-----CCe--------eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccC
Q 009203          398 IIGFDAGV-----GRA--------DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESS  464 (540)
Q Consensus       398 i~iwd~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~  464 (540)
                      |++||..-     |..        .........+.++.++|++   .+|+++--|++|++|-+++.+..+       .+.
T Consensus       478 VkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg---k~LaVsLLdnTVkVyflDtlKFfl-------sLY  547 (888)
T KOG0306|consen  478 VKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG---KLLAVSLLDNTVKVYFLDTLKFFL-------SLY  547 (888)
T ss_pred             EEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC---cEEEEEeccCeEEEEEecceeeee-------eec
Confidence            99999742     111        1235567889999999998   899999999999999999776444       567


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ||.-+|.|+..|||++.++||+.|..|+||-++-  +.+-..+-+|.+.|.++.|-|....++++|.|+.|+-||
T Consensus       548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdF--GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF--GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             ccccceeEEeccCCcCeEEeccCCCceEEecccc--chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence            8999999999999999999999999999999998  789999999999999999999999999999999999997

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=239.60  Aligned_cols=268  Identities=18%  Similarity=0.244  Sum_probs=225.6

Q ss_pred             EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR  275 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~  275 (540)
                      .++++.|++++|||..     .++.||...|..|++|+ ...||++++.|+.|+.||++..+.++.+        .||..
T Consensus       166 f~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~nkvIR~Y--------hGHlS  236 (460)
T KOG0285|consen  166 FATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEYNKVIRHY--------HGHLS  236 (460)
T ss_pred             EEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechhhhhHHHh--------ccccc
Confidence            4578899999999875     45889999999999999 4889999999999999999998887777        69999


Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      .|.|++.+|.-+.|++|    +.|.+++|||+++.   ..+..+.+   |..+|..+.+.| ....+++|+.|++|++||
T Consensus       237 ~V~~L~lhPTldvl~t~----grDst~RvWDiRtr---~~V~~l~G---H~~~V~~V~~~~-~dpqvit~S~D~tvrlWD  305 (460)
T KOG0285|consen  237 GVYCLDLHPTLDVLVTG----GRDSTIRVWDIRTR---ASVHVLSG---HTNPVASVMCQP-TDPQVITGSHDSTVRLWD  305 (460)
T ss_pred             eeEEEeccccceeEEec----CCcceEEEeeeccc---ceEEEecC---CCCcceeEEeec-CCCceEEecCCceEEEee
Confidence            99999999999999999    99999999999985   55777776   788999999999 666799999999999999


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEE
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  434 (540)
                      ++.++.     ......|...|.+++.+|....+++++.| .|+-|++-.|..+.... ....+.++..+.++    +++
T Consensus       306 l~agkt-----~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~----v~~  375 (460)
T KOG0285|consen  306 LRAGKT-----MITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG----VLV  375 (460)
T ss_pred             eccCce-----eEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc----eEE
Confidence            999874     33334599999999999999999999987 69999999888766533 34566778888876    899


Q ss_pred             EEcCCCeEEEEECCCCcceeeeeccccc-cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGWKQE-SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      +|+.+|.+.+||.+++-.........+. .-.....|.+.+|+..|..|++|..|.+|.+|.-+.
T Consensus       376 ~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  376 SGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             EcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            9999999999999987643322111110 112355799999999999999999999999998764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-32  Score=228.52  Aligned_cols=288  Identities=14%  Similarity=0.122  Sum_probs=233.9

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+.||+.+++-+.|+.+ |.+|++++.|.++.||-..+++.+.++        .||.+.|+|++...+.+.+++|    +
T Consensus         5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty--------~GHtGavW~~Did~~s~~liTG----S   71 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTY--------DGHTGAVWCCDIDWDSKHLITG----S   71 (327)
T ss_pred             ccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeee--------cCCCceEEEEEecCCcceeeec----c
Confidence            46899999999999995 999999999999999999888888877        6999999999999999999999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-----CCcEEEEecCCCCC--ccccceeec
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-----DHAVVLWSERDAED--SWKPKALHR  370 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-----dg~i~iwd~~~~~~--~~~~~~~~~  370 (540)
                      .|.++++||+.+|   +++..+..    ..+|..+.|++ ++++++....     .+.|.++|++....  ...-..+..
T Consensus        72 AD~t~kLWDv~tG---k~la~~k~----~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI  143 (327)
T KOG0643|consen   72 ADQTAKLWDVETG---KQLATWKT----NSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI  143 (327)
T ss_pred             ccceeEEEEcCCC---cEEEEeec----CCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence            9999999999998   44555553    56799999999 8888877654     36799999984331  011112233


Q ss_pred             ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      ..+.+.++.+-|.|-+++|++|..||.|.+||+++|..+..  ..+...+..+.++++.   .++++++.|.+-++||+.
T Consensus       144 ~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~---T~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  144 PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR---TYFITGSKDTTAKLVDVR  220 (327)
T ss_pred             cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc---ceEEecccCccceeeecc
Confidence            44778999999999999999999999999999999876544  3445688899999988   799999999999999999


Q ss_pred             CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcE--------------EEEeccCCCCcccccccccccce
Q 009203          449 LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVI--------------HLFDIRYSANKPSQSIRAHQKRV  514 (540)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i--------------~iwd~~~~~~~~~~~~~~h~~~i  514 (540)
                      +.+......        ...+|++.+++|....++.|+.....              ++|++-.  .+.+..+++|-++|
T Consensus       221 tl~v~Kty~--------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~--eEEigrvkGHFGPI  290 (327)
T KOG0643|consen  221 TLEVLKTYT--------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF--EEEIGRVKGHFGPI  290 (327)
T ss_pred             ceeeEEEee--------ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHH--HHHhccccccccCc
Confidence            877544332        35689999999988887777543222              1222221  23456778999999


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          515 FKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       515 ~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ++++|+|+|+..+||++||.|++.-
T Consensus       291 NsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  291 NSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             ceeEECCCCcccccCCCCceEEEEE
Confidence            9999999999999999999999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.8e-32  Score=251.62  Aligned_cols=277  Identities=14%  Similarity=0.170  Sum_probs=233.0

Q ss_pred             cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccCce
Q 009203          152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKRKL  226 (540)
Q Consensus       152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V  226 (540)
                      ..++..|.++.++|+.|.                               +-.+--.+.+.+|+.+     ..+.-..-+|
T Consensus        10 ~~rSdRVKsVd~HPtePw-------------------------------~la~LynG~V~IWnyetqtmVksfeV~~~Pv   58 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPW-------------------------------ILAALYNGDVQIWNYETQTMVKSFEVSEVPV   58 (794)
T ss_pred             hccCCceeeeecCCCCce-------------------------------EEEeeecCeeEEEecccceeeeeeeecccch
Confidence            457889999999999872                               2222336788899765     2255667899


Q ss_pred             EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203          227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN  306 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd  306 (540)
                      .+..|-+ ..+++++|+.|..|+||+..+.+.+..+        ..|.+.|.+++.+|...+++++    +.|-+|++||
T Consensus        59 Ra~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~F--------eAH~DyIR~iavHPt~P~vLts----SDDm~iKlW~  125 (794)
T KOG0276|consen   59 RAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTF--------EAHSDYIRSIAVHPTLPYVLTS----SDDMTIKLWD  125 (794)
T ss_pred             hhheeee-ccceEEEecCCceEEEEecccceeeEEe--------eccccceeeeeecCCCCeEEec----CCccEEEEee
Confidence            9999999 4899999999999999999999988888        6899999999999999999999    9999999999


Q ss_pred             cCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC
Q 009203          307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK  386 (540)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~  386 (540)
                      .+..  -.+.+++++   |...|.+++|+|.|.+.+++++-|++|++|.+....+     .+...+|...|+|++|-+.|
T Consensus       126 we~~--wa~~qtfeG---H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~-----nfTl~gHekGVN~Vdyy~~g  195 (794)
T KOG0276|consen  126 WENE--WACEQTFEG---HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP-----NFTLEGHEKGVNCVDYYTGG  195 (794)
T ss_pred             ccCc--eeeeeEEcC---cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC-----ceeeeccccCcceEEeccCC
Confidence            9976  678888887   5668999999999999999999999999999998764     44456899999999997744


Q ss_pred             --CEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc
Q 009203          387 --QIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES  463 (540)
Q Consensus       387 --~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  463 (540)
                        .+|++|+.|.++++||..+..++.+.. +...+..+.|+|.-   .++++|+.||+|+||+..+-+...       ++
T Consensus       196 dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l---piiisgsEDGTvriWhs~Ty~lE~-------tL  265 (794)
T KOG0276|consen  196 DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL---PIIISGSEDGTVRIWNSKTYKLEK-------TL  265 (794)
T ss_pred             CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC---cEEEEecCCccEEEecCcceehhh-------hh
Confidence              699999999999999999999988865 45677788899876   589999999999999998765432       22


Q ss_pred             CccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 009203          464 SESQSALINQSWSPDGLYITSGSADPVIH  492 (540)
Q Consensus       464 ~~~~~~v~~~~~sp~g~~l~sg~~dg~i~  492 (540)
                      .-.-..|+|++-.+.++.++.|...|.|.
T Consensus       266 n~gleRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  266 NYGLERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             hcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence            33456799999888888888887777653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-31  Score=265.49  Aligned_cols=264  Identities=19%  Similarity=0.271  Sum_probs=218.2

Q ss_pred             EEecCCCCeEEEecc-------chhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcC-CCCCcceeecccccCCCC
Q 009203          201 VRTSASPATIHCHTS-------NHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQ-SRGSGASLLSTTDCLSPK  272 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~-------~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~  272 (540)
                      ++.++.++.+++|..       .+.+.+|...|++++|+|| +.++++|+.|++++|||+. .+..+.++        .+
T Consensus       174 l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~~~~~l--------~g  244 (456)
T KOG0266|consen  174 LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGRNLKTL--------KG  244 (456)
T ss_pred             EEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCeEEEEe--------cC
Confidence            667778999999966       2456899999999999996 8999999999999999994 43555666        69


Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV  352 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  352 (540)
                      |...|++++|+|+|+++++|    +.|++|+|||+.++   .+...+.+   |.+.|.+++|++ ++.+|++++.|+.|+
T Consensus       245 H~~~v~~~~f~p~g~~i~Sg----s~D~tvriWd~~~~---~~~~~l~~---hs~~is~~~f~~-d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  245 HSTYVTSVAFSPDGNLLVSG----SDDGTVRIWDVRTG---ECVRKLKG---HSDGISGLAFSP-DGNLLVSASYDGTIR  313 (456)
T ss_pred             CCCceEEEEecCCCCEEEEe----cCCCcEEEEeccCC---eEEEeeec---cCCceEEEEECC-CCCEEEEcCCCccEE
Confidence            99999999999999999999    99999999999985   67777776   778899999999 999999999999999


Q ss_pred             EEecCCCCCccccceeecccCCc--ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCcc----EEEEeecCC
Q 009203          353 LWSERDAEDSWKPKALHRNLHSS--AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESK----CMSVLPNPC  426 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~  426 (540)
                      |||+.++... ....+.  .+..  .+++++|+|++.++++++.|+.+++||+..+...........    ..+....+.
T Consensus       314 vwd~~~~~~~-~~~~~~--~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (456)
T KOG0266|consen  314 VWDLETGSKL-CLKLLS--GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG  390 (456)
T ss_pred             EEECCCCcee-eeeccc--CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence            9999998721 012222  2222  699999999999999999999999999998877655333221    123333444


Q ss_pred             CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc-ccCeEEEEEcCCCCEEEEEe--CCCcEEEEecc
Q 009203          427 DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES-QSALINQSWSPDGLYITSGS--ADPVIHLFDIR  497 (540)
Q Consensus       427 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg~--~dg~i~iwd~~  497 (540)
                      +   .++++|+.|+.|++||+.++....       .+.+| ...+..+.++|..+++++++  .|+.+++|..+
T Consensus       391 ~---~~i~sg~~d~~v~~~~~~s~~~~~-------~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  391 G---KLIYSGSEDGSVYVWDSSSGGILQ-------RLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             C---CeEEEEeCCceEEEEeCCccchhh-------hhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            4   799999999999999999865433       55678 88899999999999999998  78999999765

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.5e-33  Score=252.74  Aligned_cols=289  Identities=16%  Similarity=0.213  Sum_probs=239.2

Q ss_pred             CCCCCCeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----
Q 009203          142 KDPSGSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----  216 (540)
Q Consensus       142 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----  216 (540)
                      ..+...+...++|...|+++.+.|..                         +     ..+.+++.|+.|+||+..     
T Consensus       201 ~~Pkk~~~~~~gH~kgvsai~~fp~~-------------------------~-----hLlLS~gmD~~vklW~vy~~~~~  250 (503)
T KOG0282|consen  201 YLPKKLSHNLSGHTKGVSAIQWFPKK-------------------------G-----HLLLSGGMDGLVKLWNVYDDRRC  250 (503)
T ss_pred             eccHhheeeccCCccccchhhhccce-------------------------e-----eEEEecCCCceEEEEEEecCcce
Confidence            44666777888999999998888861                         1     368899999999999653     


Q ss_pred             -hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEee
Q 009203          217 -HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHT  294 (540)
Q Consensus       217 -~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~  294 (540)
                       +++.||..+|.+++|+.+ |..+++++.|+.+++||+++|++...+..         ...++|+.|+|++ +.+++|  
T Consensus       251 lrtf~gH~k~Vrd~~~s~~-g~~fLS~sfD~~lKlwDtETG~~~~~f~~---------~~~~~cvkf~pd~~n~fl~G--  318 (503)
T KOG0282|consen  251 LRTFKGHRKPVRDASFNNC-GTSFLSASFDRFLKLWDTETGQVLSRFHL---------DKVPTCVKFHPDNQNIFLVG--  318 (503)
T ss_pred             ehhhhcchhhhhhhhcccc-CCeeeeeecceeeeeeccccceEEEEEec---------CCCceeeecCCCCCcEEEEe--
Confidence             679999999999999996 99999999999999999999998777632         2447899999999 678888  


Q ss_pred             cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203          295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                        +.|+.|+.||++++   +.++...   +|-+.|..+.|-+ ++..+++.+.|++++||+.+.+-.+.    .....+.
T Consensus       319 --~sd~ki~~wDiRs~---kvvqeYd---~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik----~i~~~~~  385 (503)
T KOG0282|consen  319 --GSDKKIRQWDIRSG---KVVQEYD---RHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIK----NIADPEM  385 (503)
T ss_pred             --cCCCcEEEEeccch---HHHHHHH---hhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccch----hhcchhh
Confidence              99999999999987   3444444   4778899999999 99999999999999999999876421    1112234


Q ss_pred             cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe------eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA------DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      -.+.++..+|++.+++.-+.|..|.+|.+...-.      ...+...+..+.+.|+|++   .+|++|+.||.+.+||.+
T Consensus       386 hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG---~~l~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  386 HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG---RTLCSGDSDGKVNFWDWK  462 (503)
T ss_pred             ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC---CeEEeecCCccEEEeech
Confidence            4577899999999999999999999998754222      2336667888899999998   799999999999999999


Q ss_pred             CCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEe
Q 009203          449 LRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFD  495 (540)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd  495 (540)
                      +.....       .++.|...+..+.|+|.. ..+|+++.||.|++|+
T Consensus       463 t~kl~~-------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  463 TTKLVS-------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hhhhhh-------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            776432       567899999999999964 6799999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.9e-30  Score=273.17  Aligned_cols=270  Identities=16%  Similarity=0.212  Sum_probs=211.1

Q ss_pred             eEEecCCCCeEEEeccch------------hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccc
Q 009203          200 LVRTSASPATIHCHTSNH------------VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD  267 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~~------------~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~  267 (540)
                      .+++++.|++|++|+...            ....+...|.+++|+|..+.+|++|+.||+|+|||+.+++....+     
T Consensus       497 ~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-----  571 (793)
T PLN00181        497 FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-----  571 (793)
T ss_pred             EEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-----
Confidence            477888999999997531            012345689999999866889999999999999999987655544     


Q ss_pred             cCCCCCCCCceeEEEec-CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe
Q 009203          268 CLSPKHRRWPEDIAWHP-QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG  346 (540)
Q Consensus       268 ~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  346 (540)
                         .+|...|++++|+| ++.+|+++    +.|+.|++||+.++   ..+..+..    ...|.++.|++.++.+|++|+
T Consensus       572 ---~~H~~~V~~l~~~p~~~~~L~Sg----s~Dg~v~iWd~~~~---~~~~~~~~----~~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        572 ---KEHEKRVWSIDYSSADPTLLASG----SDDGSVKLWSINQG---VSIGTIKT----KANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             ---cCCCCCEEEEEEcCCCCCEEEEE----cCCCEEEEEECCCC---cEEEEEec----CCCeEEEEEeCCCCCEEEEEe
Confidence               58999999999997 78899999    99999999999876   34555543    246999999765899999999


Q ss_pred             cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC------Ceeeeec-cCccEE
Q 009203          347 SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG------RADFKHQ-IESKCM  419 (540)
Q Consensus       347 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~-~~~~~~  419 (540)
                      .||.|++||++....    ......+|...|.++.|. ++.+|++++.|+.|++||++.+      ..+..+. +...+.
T Consensus       638 ~dg~I~iwD~~~~~~----~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~  712 (793)
T PLN00181        638 ADHKVYYYDLRNPKL----PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN  712 (793)
T ss_pred             CCCeEEEEECCCCCc----cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence            999999999987642    122235699999999997 6889999999999999999753      2333332 345566


Q ss_pred             EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee-eccc-----cccCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 009203          420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA-FGWK-----QESSESQSALINQSWSPDGLYITSGSADPVIHL  493 (540)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~-~~~~-----~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~i  493 (540)
                      .+.++|++   .+|++|+.|+.|++|+.......... +...     .....+...|.+++|+|++.+|++|+.||.|+|
T Consensus       713 ~v~~s~~~---~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i  789 (793)
T PLN00181        713 FVGLSVSD---GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI  789 (793)
T ss_pred             EEEEcCCC---CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence            78888876   69999999999999998755422111 1000     012345667999999999999999999999999


Q ss_pred             Eec
Q 009203          494 FDI  496 (540)
Q Consensus       494 wd~  496 (540)
                      |++
T Consensus       790 ~~~  792 (793)
T PLN00181        790 LEM  792 (793)
T ss_pred             Eec
Confidence            996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-32  Score=227.16  Aligned_cols=285  Identities=18%  Similarity=0.205  Sum_probs=229.1

Q ss_pred             eEEEEEecCCCcEEEEE-------eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCC
Q 009203          226 LRSLSLNPVNEQLFVTS-------ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADS  297 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg-------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~  297 (540)
                      =.++.|||--...||.+       ...|++.|-++...+.+..+.. +     .-.+.+..++|++.. +.++++    +
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s-~-----d~~D~LfdV~Wse~~e~~~~~a----~   80 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQS-Y-----DTEDGLFDVAWSENHENQVIAA----S   80 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEe-e-----ecccceeEeeecCCCcceEEEE----e
Confidence            36788998544455544       2468899999875554443322 1     234668899999864 477777    8


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .||++++||+...  ..++..++.   |...|.++.|++..+..+++++.|++|++|+...+..   +.+  ..+|...|
T Consensus        81 GDGSLrl~d~~~~--s~Pi~~~kE---H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S---v~T--f~gh~~~I  150 (311)
T KOG0277|consen   81 GDGSLRLFDLTMP--SKPIHKFKE---HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS---VQT--FNGHNSCI  150 (311)
T ss_pred             cCceEEEeccCCC--CcchhHHHh---hhhheEEeccccccceeEEeeccCCceEeecCCCCcc---eEe--ecCCccEE
Confidence            9999999996533  456666665   7788999999998888999999999999999988775   333  46799999


Q ss_pred             eEEEecc-CCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          378 MGVAGMQ-QKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       378 ~~l~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      ...+|+| .++++++++.|+.+++||++. |+.+....+...+.+..|+..+.  .++++|+.|+.|+.||+++.+.++.
T Consensus       151 y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--~vl~Tg~vd~~vr~wDir~~r~pl~  228 (311)
T KOG0277|consen  151 YQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--NVLATGGVDNLVRGWDIRNLRTPLF  228 (311)
T ss_pred             EEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--cEEEecCCCceEEEEehhhccccce
Confidence            9999999 578999999999999999987 45444444446788888887654  5899999999999999998876554


Q ss_pred             eeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC-CCEEEEEEcCC
Q 009203          456 AFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS-HPLLISISSDL  533 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~-~~~l~s~~~dg  533 (540)
                            ++.+|.-.|..+.|||. ...||+++.|-+++|||.... ...+.+...|+.-|..+.|++- ..++|+++.|+
T Consensus       229 ------eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~-ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe  301 (311)
T KOG0277|consen  229 ------ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ-DSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDE  301 (311)
T ss_pred             ------eecCCceEEEEEecCcchhhHhhhccccceEEecccccc-hhhhhhhhccceEEeccccccccCceeeeccccc
Confidence                  55799999999999996 467999999999999999864 5677788889999999999974 56899999999


Q ss_pred             cEEEEe
Q 009203          534 NIGLHK  539 (540)
Q Consensus       534 ~v~iw~  539 (540)
                      .++||+
T Consensus       302 ~l~Vw~  307 (311)
T KOG0277|consen  302 LLYVWN  307 (311)
T ss_pred             ceeeec
Confidence            999997

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=2.9e-32  Score=248.99  Aligned_cols=298  Identities=15%  Similarity=0.211  Sum_probs=235.0

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +++|+..|.++++.| .|..|++|+.|.+|++||+.........   +....+.....|.++.|++.|..|++.    +.
T Consensus       163 l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~---fr~l~P~E~h~i~sl~ys~Tg~~iLvv----sg  234 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRS---FRQLQPCETHQINSLQYSVTGDQILVV----SG  234 (641)
T ss_pred             ccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchh---hhccCcccccccceeeecCCCCeEEEE----ec
Confidence            589999999999999 6999999999999999999876532222   222224556779999999999999988    88


Q ss_pred             CCeEEEEecCCCCCceeEEeec---------CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee
Q 009203          299 DSQISVLNLNKTKGRACVTFLD---------DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH  369 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  369 (540)
                      ....+|+|-+..   ..+....         .-.+|...++|.+|+|.+...|+|++.||+++|||+...+..  .+++.
T Consensus       235 ~aqakl~DRdG~---~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q--~qVik  309 (641)
T KOG0772|consen  235 SAQAKLLDRDGF---EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ--LQVIK  309 (641)
T ss_pred             CcceeEEccCCc---eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh--eeEEe
Confidence            999999998743   2222222         223577889999999988899999999999999999876531  22222


Q ss_pred             ---cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--e----eeeccCccEEEEeecCCCCCceEEEEEcCCC
Q 009203          370 ---RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--D----FKHQIESKCMSVLPNPCDFNLFMVQTGTPGR  440 (540)
Q Consensus       370 ---~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  440 (540)
                         ..+..-.++.++|+++|++|++|+.||.|.+|+..+...  .    ..|..+..+.++.|++++   .+|++-+.|+
T Consensus       310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg---~~LlSRg~D~  386 (641)
T KOG0772|consen  310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG---NYLLSRGFDD  386 (641)
T ss_pred             eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc---chhhhccCCC
Confidence               123445789999999999999999999999999864322  1    124555689999999998   7999999999


Q ss_pred             eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC------CCcEEEEeccCCCCcccccccccccce
Q 009203          441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA------DPVIHLFDIRYSANKPSQSIRAHQKRV  514 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~h~~~i  514 (540)
                      ++++||++..+.++....    --....+-+.++|||+.++|++|..      .|.+.+||..+  ...+..+......|
T Consensus       387 tLKvWDLrq~kkpL~~~t----gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t--~d~v~ki~i~~aSv  460 (641)
T KOG0772|consen  387 TLKVWDLRQFKKPLNVRT----GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT--LDTVYKIDISTASV  460 (641)
T ss_pred             ceeeeeccccccchhhhc----CCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc--eeeEEEecCCCceE
Confidence            999999998876655431    1112235578899999999999864      47899999987  67777777778889


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          515 FKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       515 ~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      ..+.|+|.-+.|+.|+.||+++||
T Consensus       461 v~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  461 VRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             EEEeecchhhheeeecCCCceEEE
Confidence            999999999999999999999986

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5e-32  Score=258.04  Aligned_cols=286  Identities=15%  Similarity=0.219  Sum_probs=242.5

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +.||...|.++++|.| ...+++|+ .+.++||+..+.++++++..          +.+.+..|.|.++++++|    ..
T Consensus       369 ~~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn~~t~kciRTi~~----------~y~l~~~Fvpgd~~Iv~G----~k  432 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSD-SILLASGA-GESIKIWNRDTLKCIRTITC----------GYILASKFVPGDRYIVLG----TK  432 (888)
T ss_pred             eccchhheeEEEeecC-ceeeeecC-CCcEEEEEccCcceeEEecc----------ccEEEEEecCCCceEEEe----cc
Confidence            5799999999999985 66666665 56899999999999988843          258899999999999999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC--ccccceee-----cc
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED--SWKPKALH-----RN  371 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~-----~~  371 (540)
                      +|.+.+||+.+.   ..+....   .|.+.|++++.+| ++..+++|+.|.+|++||..--..  ..+.+.+.     ..
T Consensus       433 ~Gel~vfdlaS~---~l~Eti~---AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL  505 (888)
T KOG0306|consen  433 NGELQVFDLASA---SLVETIR---AHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL  505 (888)
T ss_pred             CCceEEEEeehh---hhhhhhh---ccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE
Confidence            999999999975   3333333   4789999999999 999999999999999999752111  00011111     11


Q ss_pred             cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      .-...|.|+.+||||++|+++--|.++++|-+.+-+.... +.+.-++.++..+|++   .++++|+.|.+|++|-+.-+
T Consensus       506 el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS---klivTgSADKnVKiWGLdFG  582 (888)
T KOG0306|consen  506 ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS---KLIVTGSADKNVKIWGLDFG  582 (888)
T ss_pred             eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc---CeEEeccCCCceEEeccccc
Confidence            2457899999999999999999999999999998776443 5666788888888888   79999999999999999988


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      .+..       .+-+|...|.++.|-|+...++++|.|+.|+-||-..  ...+..+.+|...|++++.+|+|.+++|+|
T Consensus       583 DCHK-------S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~G~~vvs~s  653 (888)
T KOG0306|consen  583 DCHK-------SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPNGSFVVSSS  653 (888)
T ss_pred             hhhh-------hhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCCCCeEEecc
Confidence            8754       4457999999999999999999999999999999997  889999999999999999999999999999


Q ss_pred             cCCcEEEEe
Q 009203          531 SDLNIGLHK  539 (540)
Q Consensus       531 ~dg~v~iw~  539 (540)
                      .|.+|++|.
T Consensus       654 hD~sIRlwE  662 (888)
T KOG0306|consen  654 HDKSIRLWE  662 (888)
T ss_pred             CCceeEeee
Confidence            999999996

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-32  Score=234.38  Aligned_cols=303  Identities=16%  Similarity=0.174  Sum_probs=237.7

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC----Ccceeec------ccccCCCCCCCCceeEEEecCCCe
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG----SGASLLS------TTDCLSPKHRRWPEDIAWHPQGNS  288 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~----~~~~~~~------~~~~~~~~h~~~V~~~~~~~~~~~  288 (540)
                      +..|++++.+-+|+|| |.++|||+.|..|+|.|++..-    .......      ..-...-.|.+.|+++.|+|....
T Consensus       108 lt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             EeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            4689999999999997 9999999999999999987210    0000000      000011368899999999999999


Q ss_pred             EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee
Q 009203          289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL  368 (540)
Q Consensus       289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  368 (540)
                      |+++    +.|++|++||+.....++..+.+..    ..+|.++.|+| .|.+|+.|....++++||+.+-++.....  
T Consensus       187 LiS~----srD~tvKlFDfsK~saKrA~K~~qd----~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfvsan--  255 (430)
T KOG0640|consen  187 LISG----SRDNTVKLFDFSKTSAKRAFKVFQD----TEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSAN--  255 (430)
T ss_pred             EEec----cCCCeEEEEecccHHHHHHHHHhhc----cceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecC--
Confidence            9999    9999999999986654455555553    46799999999 99999999999999999999988633222  


Q ss_pred             ecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec---cCccEEEEeecCCCCCceEEEEEcCCCeEEEE
Q 009203          369 HRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLY  445 (540)
Q Consensus       369 ~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~  445 (540)
                      ....|.+.|+++.+++.|++.++++.||.|++||--+++++..+.   .+..+.+..|..++   +++++.+.|..|++|
T Consensus       256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~---kyiLsSG~DS~vkLW  332 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG---KYILSSGKDSTVKLW  332 (430)
T ss_pred             cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC---eEEeecCCcceeeee
Confidence            335699999999999999999999999999999999898876643   34677888888877   899999999999999


Q ss_pred             ECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC
Q 009203          446 DIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP  524 (540)
Q Consensus       446 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~  524 (540)
                      .+.++.......+.-  ..+...--+...|+....|++.-. ..+.+.-||.++.....+ --.+|.+.+..+.-+|.+.
T Consensus       333 Ei~t~R~l~~YtGAg--~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l-~slgHn~a~R~i~HSP~~p  409 (430)
T KOG0640|consen  333 EISTGRMLKEYTGAG--TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL-LSLGHNGAVRWIVHSPVEP  409 (430)
T ss_pred             eecCCceEEEEecCC--cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh-cccCCCCCceEEEeCCCCC
Confidence            999998777655421  112222234456777777776654 357899999998522222 2347999999999999999


Q ss_pred             EEEEEEcCCcEEEEe
Q 009203          525 LLISISSDLNIGLHK  539 (540)
Q Consensus       525 ~l~s~~~dg~v~iw~  539 (540)
                      .+++||.|..+++|-
T Consensus       410 ~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  410 AFMTCSDDFRARFWY  424 (430)
T ss_pred             ceeeecccceeeeee
Confidence            999999999999994

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=8.9e-31  Score=219.68  Aligned_cols=284  Identities=18%  Similarity=0.270  Sum_probs=235.2

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~  296 (540)
                      -+.+|...|.+|+|+.+ |..|++|+.|+++++|+++........      ...+|.+.|-.++|+|. .+.|+++    
T Consensus        15 ~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~~~~------~~~gh~~svdql~w~~~~~d~~ata----   83 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFRKEL------VYRGHTDSVDQLCWDPKHPDLFATA----   83 (313)
T ss_pred             HhhhhhhcceEEEEccc-CceeeecccCCceEEEEecchhhhhhh------cccCCCcchhhheeCCCCCcceEEe----
Confidence            35799999999999996 999999999999999999876433222      22689999999999884 5688888    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|..|++||+..+   ++......    .+.-.-+.|+| ++.+++.++.|..|.+.|.++.+.      .......-.
T Consensus        84 s~dk~ir~wd~r~~---k~~~~i~~----~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~------~~~~~~~~e  149 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSG---KCTARIET----KGENINITWSP-DGEYIAVGNKDDRITFIDARTYKI------VNEEQFKFE  149 (313)
T ss_pred             cCCceEEEEEeccC---cEEEEeec----cCcceEEEEcC-CCCEEEEecCcccEEEEEecccce------eehhcccce
Confidence            99999999999987   44544443    23345688999 999999999999999999998763      222224556


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      +..++|+-++++++.....|+|.|......+++.... +...|.++.|+|.+   +++++|+.|..+.+||+...-+.. 
T Consensus       150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G---ryfA~GsADAlvSLWD~~ELiC~R-  225 (313)
T KOG1407|consen  150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG---RYFATGSADALVSLWDVDELICER-  225 (313)
T ss_pred             eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC---ceEeeccccceeeccChhHhhhhe-
Confidence            8889999888888888888999999998888877644 45889999999998   899999999999999998665543 


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC---
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD---  532 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d---  532 (540)
                            .+..+..+|..+.||.||++||+|++|..|-|=++.+  +..+..++ +.++-..++|+|...+||-++.|   
T Consensus       226 ------~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vet--Gd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~  296 (313)
T KOG1407|consen  226 ------CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVET--GDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDG  296 (313)
T ss_pred             ------eeccccCceEEEEeccCcceeeccCccceEEeEeccc--CCeEEEee-ccCCceeEEecCCCceeeEEecCCCC
Confidence                  4467889999999999999999999999999999998  66676666 77889999999999999988765   


Q ss_pred             ------CcEEEEe
Q 009203          533 ------LNIGLHK  539 (540)
Q Consensus       533 ------g~v~iw~  539 (540)
                            |.|++|-
T Consensus       297 d~~reag~vKiFG  309 (313)
T KOG1407|consen  297 DSNREAGTVKIFG  309 (313)
T ss_pred             ccccccceeEEec
Confidence                  5677763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.1e-30  Score=242.96  Aligned_cols=281  Identities=24%  Similarity=0.378  Sum_probs=232.5

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccccc
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHK  223 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~  223 (540)
                      ..+.+|...|.++.+.|...                               .++++..++.+.+|+..     ..+.+|.
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~-------------------------------~l~~~~~~g~i~i~~~~~~~~~~~~~~~~   51 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGK-------------------------------LLATGSGDGTIKVWDLETGELLRTLKGHT   51 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCC-------------------------------EEEEeecCcEEEEEEeeCCCcEEEEecCC
Confidence            34568889999999988632                               45666678999999764     4578899


Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ..+.++.|+|+ +.+|++++.||.|++|++..++....+        ..|...|.++.|++++.+++++    +.++.|.
T Consensus        52 ~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~----~~~~~i~  118 (289)
T cd00200          52 GPVRDVAASAD-GTYLASGSSDKTIRLWDLETGECVRTL--------TGHTSYVSSVAFSPDGRILSSS----SRDKTIK  118 (289)
T ss_pred             cceeEEEECCC-CCEEEEEcCCCeEEEEEcCcccceEEE--------eccCCcEEEEEEcCCCCEEEEe----cCCCeEE
Confidence            99999999996 789999999999999999987655554        4677789999999998888888    7799999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      +||+.++   .....+..   |...+.+++|+| ++.++++++.|+.|++||+++++.   ...+  ..|...+.++.|+
T Consensus       119 ~~~~~~~---~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~---~~~~--~~~~~~i~~~~~~  186 (289)
T cd00200         119 VWDVETG---KCLTTLRG---HTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKC---VATL--TGHTGEVNSVAFS  186 (289)
T ss_pred             EEECCCc---EEEEEecc---CCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEcccccc---ceeE--ecCccccceEEEC
Confidence            9999865   34444443   567899999999 788888888899999999987764   2222  3577899999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc
Q 009203          384 QQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE  462 (540)
Q Consensus       384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  462 (540)
                      |+++.+++++.++.|++||++.++.+... .....+.++.++|++   .++++++.+|.|++||+.++....       .
T Consensus       187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~i~i~~~~~~~~~~-------~  256 (289)
T cd00200         187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG---YLLASGSEDGTIRVWDLRTGECVQ-------T  256 (289)
T ss_pred             CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC---cEEEEEcCCCcEEEEEcCCceeEE-------E
Confidence            99999999999999999999988877666 555688899999975   688888889999999998765433       3


Q ss_pred             cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          463 SSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      +..|...|.+++|+|++.+|++++.||.|++|+
T Consensus       257 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            346788999999999999999999999999996

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=3.1e-30  Score=231.07  Aligned_cols=268  Identities=18%  Similarity=0.218  Sum_probs=222.7

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      .+.+++.|.++.+++..     .+++||+..|+.+.|+|+ ...+++++.|..|+||...........        ..|.
T Consensus       233 ~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~~~~--------~~h~  303 (506)
T KOG0289|consen  233 KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEPTSS--------RPHE  303 (506)
T ss_pred             cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCcccc--------cccc
Confidence            46778889889998775     568999999999999996 889999999999999999876543333        5799


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      .+|+.+..+|.|.||+++    +.|++..+.|+.++   .++...... ...-.+++.+|+| ||.+|.+|..||.|+||
T Consensus       304 ~~V~~ls~h~tgeYllsA----s~d~~w~Fsd~~~g---~~lt~vs~~-~s~v~~ts~~fHp-DgLifgtgt~d~~vkiw  374 (506)
T KOG0289|consen  304 EPVTGLSLHPTGEYLLSA----SNDGTWAFSDISSG---SQLTVVSDE-TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIW  374 (506)
T ss_pred             ccceeeeeccCCcEEEEe----cCCceEEEEEccCC---cEEEEEeec-cccceeEEeeEcC-CceEEeccCCCceEEEE
Confidence            999999999999999999    99999999999987   334333321 1234589999999 99999999999999999


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  434 (540)
                      |+..+..     .....+|.++|..++|+.+|.+|++++.|+.|++||+|..+....+.                     
T Consensus       375 dlks~~~-----~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~---------------------  428 (506)
T KOG0289|consen  375 DLKSQTN-----VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ---------------------  428 (506)
T ss_pred             EcCCccc-----cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee---------------------
Confidence            9998764     33336699999999999999999999999999999999654211110                     


Q ss_pred             EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccce
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRV  514 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i  514 (540)
                                  +.                 ....+.++.|++.|.+|+.++.|=.|++++-.+.....+..+..|.+..
T Consensus       429 ------------l~-----------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s  479 (506)
T KOG0289|consen  429 ------------LD-----------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLS  479 (506)
T ss_pred             ------------cc-----------------ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccc
Confidence                        00                 1125888999999999999988888888887665577888888999999


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          515 FKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       515 ~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +++.|....++++++|.|..++++.+
T Consensus       480 t~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  480 TGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeeecccceEEeeccchhheEEeec
Confidence            99999999999999999999998864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=3.2e-32  Score=226.82  Aligned_cols=283  Identities=18%  Similarity=0.208  Sum_probs=234.0

Q ss_pred             cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccCce
Q 009203          152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKRKL  226 (540)
Q Consensus       152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V  226 (540)
                      .+|+.+|-.+++.|-.|                            ..+.+.+++.|+.-.+-+++     .++.||.+.|
T Consensus        11 ~ghtrpvvdl~~s~itp----------------------------~g~flisa~kd~~pmlr~g~tgdwigtfeghkgav   62 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITP----------------------------DGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAV   62 (334)
T ss_pred             cCCCcceeEEeccCCCC----------------------------CceEEEEeccCCCchhccCCCCCcEEeeeccCcce
Confidence            47777777777777644                            11234444555554444333     4689999999


Q ss_pred             EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203          227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN  306 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd  306 (540)
                      ++..++. +....|+++.|-+.+|||.-++..+..+         .|..-|.+++|+.|.++|++|    +.+..++|||
T Consensus        63 w~~~l~~-na~~aasaaadftakvw~a~tgdelhsf---------~hkhivk~~af~~ds~~lltg----g~ekllrvfd  128 (334)
T KOG0278|consen   63 WSATLNK-NATRAASAAADFTAKVWDAVTGDELHSF---------EHKHIVKAVAFSQDSNYLLTG----GQEKLLRVFD  128 (334)
T ss_pred             eeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhh---------hhhheeeeEEecccchhhhcc----chHHHhhhhh
Confidence            9999998 4788899999999999999999877776         688889999999999999999    9999999999


Q ss_pred             cCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC
Q 009203          307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK  386 (540)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~  386 (540)
                      ++..+  .....+.+   |.+.|..+-|.. ..+.|++.+.|++|++||.+++..   .+.+.   ....|+++.++++|
T Consensus       129 ln~p~--App~E~~g---htg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~---v~sL~---~~s~VtSlEvs~dG  196 (334)
T KOG0278|consen  129 LNRPK--APPKEISG---HTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTE---VQSLE---FNSPVTSLEVSQDG  196 (334)
T ss_pred             ccCCC--CCchhhcC---CCCcceeEEEec-cCceEEeeccCCceEEEEeccCcE---EEEEe---cCCCCcceeeccCC
Confidence            98762  33444443   678899999998 778888889999999999999986   33333   45779999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc
Q 009203          387 QIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES  466 (540)
Q Consensus       387 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  466 (540)
                      .+|.++ ..+.|.+||..+-..+........+.+...+|..   ..+++|+.|..++.||..++.....      ..++|
T Consensus       197 ~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k---~~fVaGged~~~~kfDy~TgeEi~~------~nkgh  266 (334)
T KOG0278|consen  197 RILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK---EFFVAGGEDFKVYKFDYNTGEEIGS------YNKGH  266 (334)
T ss_pred             CEEEEe-cCceeEEeccccccceeeccCccccccccccCCC---ceEEecCcceEEEEEeccCCceeee------cccCC
Confidence            987665 4568999999999999999999999999999987   5899999999999999999886443      24789


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          467 QSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       467 ~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .++|.|+.|+|+|...++|+.||+|++|.+..
T Consensus       267 ~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  267 FGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             CCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence            99999999999999999999999999999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.8e-31  Score=234.74  Aligned_cols=265  Identities=12%  Similarity=0.142  Sum_probs=215.7

Q ss_pred             eEEecCCCCeEEEeccc--------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCC
Q 009203          200 LVRTSASPATIHCHTSN--------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP  271 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~--------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  271 (540)
                      .+|+++.|.+..+|...        +++.||..+|.-+.|||| .++|++|+.|..+.+||+.++.....+.       .
T Consensus       238 yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lwDv~tgd~~~~y~-------~  309 (519)
T KOG0293|consen  238 YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLWDVDTGDLRHLYP-------S  309 (519)
T ss_pred             eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC-CCeEEecCchHheeeccCCcchhhhhcc-------c
Confidence            57888899999999432        568999999999999997 8899999999999999999998766653       2


Q ss_pred             CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203          272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV  351 (540)
Q Consensus       272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  351 (540)
                      +|...+.+++|.|||..+++|    +.|+++..||++..    .....++.  ....|.+++..+ ||.++++.+.|..|
T Consensus       310 ~~~~S~~sc~W~pDg~~~V~G----s~dr~i~~wdlDgn----~~~~W~gv--r~~~v~dlait~-Dgk~vl~v~~d~~i  378 (519)
T KOG0293|consen  310 GLGFSVSSCAWCPDGFRFVTG----SPDRTIIMWDLDGN----ILGNWEGV--RDPKVHDLAITY-DGKYVLLVTVDKKI  378 (519)
T ss_pred             CcCCCcceeEEccCCceeEec----CCCCcEEEecCCcc----hhhccccc--ccceeEEEEEcC-CCcEEEEEecccce
Confidence            456789999999999999999    99999999999853    12222221  124599999999 99999999999999


Q ss_pred             EEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCC
Q 009203          352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDF  428 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~  428 (540)
                      ++|+..+...   ...+   ....+|++++.|.+|+++++--.+..+++||+.....+..+   ..+..+..-+|...+.
T Consensus       379 ~l~~~e~~~d---r~li---se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~  452 (519)
T KOG0293|consen  379 RLYNREARVD---RGLI---SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND  452 (519)
T ss_pred             eeechhhhhh---hccc---cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence            9999988654   1111   14567999999999999999999999999999977665543   3344455555544332


Q ss_pred             CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccC
Q 009203          429 NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       429 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~  498 (540)
                        .++++|+.|+.|+||+..++....       .+.||...|++++|+|.. .++|+++.||+|+||....
T Consensus       453 --~fiaSGSED~kvyIWhr~sgkll~-------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  453 --KFIASGSEDSKVYIWHRISGKLLA-------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             --ceEEecCCCceEEEEEccCCceeE-------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence              599999999999999999888644       678999999999999954 6789999999999998774

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-31  Score=258.82  Aligned_cols=274  Identities=19%  Similarity=0.264  Sum_probs=222.3

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      ..-+..|.+++|+| ...+++++-..|.|++||...+.++..+        ..|.++|..++|+|.+.++++|    +.|
T Consensus         6 EskSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rF--------deHdGpVRgv~FH~~qplFVSG----GDD   72 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRF--------DEHDGPVRGVDFHPTQPLFVSG----GDD   72 (1202)
T ss_pred             hcccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhh--------hccCCccceeeecCCCCeEEec----CCc
Confidence            34457799999999 5999999999999999999998887777        5899999999999999999999    999


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      -.|++|+..+.   +|+.++.+   |-+.|..+.|++ .-.+|+++|.|.+|+||+..++.+   +..+  .+|...|+|
T Consensus        73 ykIkVWnYk~r---rclftL~G---HlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~---iavl--tGHnHYVMc  140 (1202)
T KOG0292|consen   73 YKIKVWNYKTR---RCLFTLLG---HLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKC---IAVL--TGHNHYVMC  140 (1202)
T ss_pred             cEEEEEecccc---eehhhhcc---ccceeEEeeccC-CCceEEEccCCCeEEEEeccCCce---EEEE--ecCceEEEe
Confidence            99999999974   66766665   778899999999 889999999999999999999987   3444  569999999


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      ..|+|....++++|-|.+|++||+..-+......  +   ++.-...+..+..=+.|+.|-.|                 
T Consensus       141 AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~p--g---~~e~~~~~~~~~~dLfg~~DaVV-----------------  198 (1202)
T KOG0292|consen  141 AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAP--G---SLEDQMRGQQGNSDLFGQTDAVV-----------------  198 (1202)
T ss_pred             eccCCccceEEEecccceEEEEeecchhccCCCC--C---CchhhhhccccchhhcCCcCeee-----------------
Confidence            9999999999999999999999997433211110  0   00000000000000111112111                 


Q ss_pred             ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      +..+.||...|+-++|+|.-..|++|+.|..|++|.++....-.+.++.+|.+.|.++-|+|...+++|.|+|++|+|||
T Consensus       199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             eeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            22568999999999999999999999999999999998643446778899999999999999999999999999999999


Q ss_pred             C
Q 009203          540 I  540 (540)
Q Consensus       540 l  540 (540)
                      +
T Consensus       279 m  279 (1202)
T KOG0292|consen  279 M  279 (1202)
T ss_pred             c
Confidence            6

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.8e-31  Score=239.55  Aligned_cols=277  Identities=15%  Similarity=0.204  Sum_probs=232.1

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      +.|++++|+|....-+|+.+. -.|.||+..+.....++        ....+.|.++.|..||++|++|    ...|.|+
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~--------srFk~~v~s~~fR~DG~LlaaG----D~sG~V~   93 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF--------SRFKDVVYSVDFRSDGRLLAAG----DESGHVK   93 (487)
T ss_pred             CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH--------HhhccceeEEEeecCCeEEEcc----CCcCcEE
Confidence            689999999965555666553 47999999887665555        2445678999999999999999    9999999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      |||+.+   ...++.+..   |..+|..+.|+|.++..|++|+.|+.+++||+.+..    . .....+|++.|.|.+|+
T Consensus        94 vfD~k~---r~iLR~~~a---h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v-~~~l~~htDYVR~g~~~  162 (487)
T KOG0310|consen   94 VFDMKS---RVILRQLYA---HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----V-QAELSGHTDYVRCGDIS  162 (487)
T ss_pred             Eecccc---HHHHHHHhh---ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----E-EEEecCCcceeEeeccc
Confidence            999665   234555554   788999999999999999999999999999999876    2 44557899999999999


Q ss_pred             cC-CCEEEEEeCCCeEEEEECCCC-CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203          384 QQ-KQIVLSAGADKRIIGFDAGVG-RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ  461 (540)
Q Consensus       384 ~~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  461 (540)
                      |. +.++++|+.||.|++||++.. ..+....++.++-++.+-|.+   ..+++++ .+.|++||+.++.....      
T Consensus       163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsg---s~iasAg-Gn~vkVWDl~~G~qll~------  232 (487)
T KOG0310|consen  163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSG---SLIASAG-GNSVKVWDLTTGGQLLT------  232 (487)
T ss_pred             cCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCC---CEEEEcC-CCeEEEEEecCCceehh------
Confidence            85 558999999999999999987 667788899999999999987   4666665 46899999997776543      


Q ss_pred             ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203          462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGL  537 (540)
Q Consensus       462 ~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~i  537 (540)
                      ....|...|+|+.+..++..|++|+-|+.+++||+.+  .+.+..+. ..++|.+++.+|+++.++.|-.||.+.+
T Consensus       233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~--~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN--YKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             hhhcccceEEEEEeecCCceEeecccccceEEEEccc--eEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence            2344889999999999999999999999999999876  67777776 5679999999999999999999998765

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-30  Score=214.16  Aligned_cols=259  Identities=14%  Similarity=0.133  Sum_probs=211.7

Q ss_pred             EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR  275 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~  275 (540)
                      +.+...|+++++|+..     +++.||...|..++.+.| ...+++|+.|..|.+||+++++..+.+        .+|.+
T Consensus        32 ~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vwDV~TGkv~Rr~--------rgH~a  102 (307)
T KOG0316|consen   32 CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVWDVNTGKVDRRF--------RGHLA  102 (307)
T ss_pred             EEEcCCCceEEeecccccceeeeecCCCceeeecccccc-ccccccCCCCceEEEEEcccCeeeeec--------ccccc
Confidence            4456779999999775     568999999999999997 778999999999999999999998888        79999


Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      .|+.++|+.+...+++|    +.|.++++||.++.. .++++.+..   ..+.|.++..+   +..|++|+.||+++.||
T Consensus       103 qVNtV~fNeesSVv~Sg----sfD~s~r~wDCRS~s-~ePiQilde---a~D~V~Si~v~---~heIvaGS~DGtvRtyd  171 (307)
T KOG0316|consen  103 QVNTVRFNEESSVVASG----SFDSSVRLWDCRSRS-FEPIQILDE---AKDGVSSIDVA---EHEIVAGSVDGTVRTYD  171 (307)
T ss_pred             eeeEEEecCcceEEEec----cccceeEEEEcccCC-CCccchhhh---hcCceeEEEec---ccEEEeeccCCcEEEEE
Confidence            99999999999999999    999999999999653 466777765   45679999984   57899999999999999


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCCCceE
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  432 (540)
                      ++.|..     ..  .....+|+++.|+++++..+.++.|+++++.|-.+|+.+..+   .....-...+++...   ..
T Consensus       172 iR~G~l-----~s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd---th  241 (307)
T KOG0316|consen  172 IRKGTL-----SS--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD---TH  241 (307)
T ss_pred             eeccee-----eh--hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc---ee
Confidence            999874     22  235678999999999999999999999999999999987653   333444455555555   68


Q ss_pred             EEEEcCCCeEEEEECCCCcceeeeeccccccCccccC-eEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA-LINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      +++|+.||.|++||+........       +..+... |++++++|.-..++++.. +.+.+|--.
T Consensus       242 V~sgSEDG~Vy~wdLvd~~~~sk-------~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~  299 (307)
T KOG0316|consen  242 VFSGSEDGKVYFWDLVDETQISK-------LSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQE  299 (307)
T ss_pred             EEeccCCceEEEEEeccceeeee-------eccCCceeEEeeecccCccceeEecC-Cceeceeeh
Confidence            99999999999999987765432       2334444 889999998877777754 446666443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=9.5e-31  Score=253.93  Aligned_cols=302  Identities=15%  Similarity=0.124  Sum_probs=211.6

Q ss_pred             cc-cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCC-----CCCCCCceeEEEecCCCeEEEE
Q 009203          219 SS-LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS-----PKHRRWPEDIAWHPQGNSLFSA  292 (540)
Q Consensus       219 ~~-~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~~~~~~~~~~l~s~  292 (540)
                      +. +|.+.|+++.||+| |+|||+||.||.|+||.+...+....-.....+..     .+...++..-.-...++....-
T Consensus       262 ~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             cccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            44 99999999999996 99999999999999999976443111100000000     0000000000000001111110


Q ss_pred             eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203          293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL  372 (540)
Q Consensus       293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  372 (540)
                        .+.....+.+-+..-.-...++..+.+   |.+.|..+.|+  .+++|++++.|.+|++|++....|   +..+   .
T Consensus       341 --~~~~s~~~~~p~~~f~f~ekP~~ef~G---Ht~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~C---L~~F---~  407 (712)
T KOG0283|consen  341 --KGSQSPCVLLPLKAFVFSEKPFCEFKG---HTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKEC---LKVF---S  407 (712)
T ss_pred             --cccCCccccCCCccccccccchhhhhc---cchhheecccc--cCCeeEeccccccEEeecCCCcce---eeEE---e
Confidence              001222222211111111233444444   78899999999  567899999999999999998887   3333   3


Q ss_pred             CCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          373 HSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       373 ~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      |.+.|+|++|+| |.+++++|+-||.|+||++...+.+.......-+.++++.|+|   .+.++|+.+|.+++|+....+
T Consensus       408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdG---k~avIGt~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDG---KGAVIGTFNGYCRFYDTEGLK  484 (712)
T ss_pred             cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCC---ceEEEEEeccEEEEEEccCCe
Confidence            999999999999 7899999999999999999988888888888999999999997   799999999999999998765


Q ss_pred             ceeeee-cccc-ccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCccccccccccc--ceeEEEEcCCCCEE
Q 009203          452 TEIHAF-GWKQ-ESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQK--RVFKAVWHYSHPLL  526 (540)
Q Consensus       452 ~~~~~~-~~~~-~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~--~i~~l~~s~~~~~l  526 (540)
                      ...... .... .-..|. .|+++.|.|.. ..|++.+.|..|+|||.+.  ..++..++++..  .-....|+.||++|
T Consensus       485 ~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I  561 (712)
T KOG0283|consen  485 LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--KDLVHKFKGFRNTSSQISASFSSDGKHI  561 (712)
T ss_pred             EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc--hhhhhhhcccccCCcceeeeEccCCCEE
Confidence            332211 0011 112233 79999999843 3577777999999999986  678888886543  34567899999999


Q ss_pred             EEEEcCCcEEEEeC
Q 009203          527 ISISSDLNIGLHKI  540 (540)
Q Consensus       527 ~s~~~dg~v~iw~l  540 (540)
                      +++++|..|+||++
T Consensus       562 Vs~seDs~VYiW~~  575 (712)
T KOG0283|consen  562 VSASEDSWVYIWKN  575 (712)
T ss_pred             EEeecCceEEEEeC
Confidence            99999999999985

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=2.7e-30  Score=227.85  Aligned_cols=279  Identities=17%  Similarity=0.272  Sum_probs=223.3

Q ss_pred             ecccccccce-------EEecCCCCeEEEeccc----hhcccccCceEEEEEecC--CCcEEEEEeCCceEEEEEcCCCC
Q 009203          191 QKEHRELIPL-------VRTSASPATIHCHTSN----HVSSLHKRKLRSLSLNPV--NEQLFVTSALDGVIRLWQLQSRG  257 (540)
Q Consensus       191 ~~~~~~~v~~-------~~~~~~d~~i~~~~~~----~~~~~h~~~V~~l~~spd--~~~~l~tg~~dg~v~iw~~~~~~  257 (540)
                      .--|+.+|..       +-+++-|+++++|+..    .++.||.++|.+++|.--  ....|++++.|.++++|..+.+.
T Consensus       101 ~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  101 CFLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             cccchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            3456666644       5577789999999765    568999999999988541  23369999999999999998877


Q ss_pred             CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC----------------------Ccee
Q 009203          258 SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK----------------------GRAC  315 (540)
Q Consensus       258 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~----------------------~~~~  315 (540)
                      .........    .||...|-+++..++|..+++|    +.|..|.||+..+..                      ....
T Consensus       181 ~~~~~~~~~----~GHk~~V~sVsv~~sgtr~~Sg----S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P  252 (423)
T KOG0313|consen  181 NKVKALKVC----RGHKRSVDSVSVDSSGTRFCSG----SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP  252 (423)
T ss_pred             hhhhHHhHh----cccccceeEEEecCCCCeEEee----cccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence            544433221    4999999999999999999999    999999999933211                      0123


Q ss_pred             EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC
Q 009203          316 VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD  395 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d  395 (540)
                      +..+.   +|..+|.++.|++  ...+++++.|.+|+.||+.++.+..   .+.   ....++++.++|...+|++|+.|
T Consensus       253 ~vtl~---GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~---~~~---~~ksl~~i~~~~~~~Ll~~gssd  321 (423)
T KOG0313|consen  253 LVTLE---GHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKS---TLT---TNKSLNCISYSPLSKLLASGSSD  321 (423)
T ss_pred             eEEec---ccccceeeEEEcC--CCceEeecccceEEEEEeeccccee---eee---cCcceeEeecccccceeeecCCC
Confidence            33444   4789999999985  6789999999999999999998622   221   45679999999999999999999


Q ss_pred             CeEEEEECCCCCe--e--eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeE
Q 009203          396 KRIIGFDAGVGRA--D--FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALI  471 (540)
Q Consensus       396 g~i~iwd~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~  471 (540)
                      ..+++||.+++.-  +  ....+...+.++.|+|.+.  ..|++|+.|+++++||+++...++.      .+.+|...|.
T Consensus       322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~--~~~~S~S~D~t~klWDvRS~k~ply------dI~~h~DKvl  393 (423)
T KOG0313|consen  322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE--FQLVSGSYDNTVKLWDVRSTKAPLY------DIAGHNDKVL  393 (423)
T ss_pred             CceeecCCCCCCCceeEEeeecchhhhhheecCCCCc--eEEEEEecCCeEEEEEeccCCCcce------eeccCCceEE
Confidence            9999999998643  2  1244556888999999876  5899999999999999998875554      4578999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          472 NQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       472 ~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      ++.|. ++.+|++|+.|.+|+|+...
T Consensus       394 ~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  394 SVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             EEecc-CCceEEeccCcceEEEeccc
Confidence            99998 57799999999999999765

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.4e-30  Score=242.07  Aligned_cols=275  Identities=13%  Similarity=0.205  Sum_probs=226.6

Q ss_pred             EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203          227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN  306 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd  306 (540)
                      +-++|+.  ...||.|.. ..|.+|+..++....-.        ..+.+.|+++.|+++|.+|++|    ..+|.|.|||
T Consensus       181 nlldWss--~n~laValg-~~vylW~~~s~~v~~l~--------~~~~~~vtSv~ws~~G~~LavG----~~~g~v~iwD  245 (484)
T KOG0305|consen  181 NLLDWSS--ANVLAVALG-QSVYLWSASSGSVTELC--------SFGEELVTSVKWSPDGSHLAVG----TSDGTVQIWD  245 (484)
T ss_pred             hHhhccc--CCeEEEEec-ceEEEEecCCCceEEeE--------ecCCCceEEEEECCCCCEEEEe----ecCCeEEEEe
Confidence            4467884  567888764 47999999988732222        1236789999999999999999    9999999999


Q ss_pred             cCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC
Q 009203          307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK  386 (540)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~  386 (540)
                      ..+.   ..+..+.+  +|...|.+++|.   +..+.+|+.|+.|.++|++..+....    ...+|...|..+.|++|+
T Consensus       246 ~~~~---k~~~~~~~--~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~----~~~~H~qeVCgLkws~d~  313 (484)
T KOG0305|consen  246 VKEQ---KKTRTLRG--SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVS----TLQGHRQEVCGLKWSPDG  313 (484)
T ss_pred             hhhc---cccccccC--CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhh----hhhcccceeeeeEECCCC
Confidence            9875   33555544  377889999995   57899999999999999999875322    246799999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEE--cCCCeEEEEECCCCcceeeeecccccc
Q 009203          387 QIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTG--TPGRQLRLYDIRLRQTEIHAFGWKQES  463 (540)
Q Consensus       387 ~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~~  463 (540)
                      .++++|+.|+.+.|||.....+... ..+...+.+++|+|....  +||+|  +.|++|++||..++......       
T Consensus       314 ~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~--lLAsGGGs~D~~i~fwn~~~g~~i~~v-------  384 (484)
T KOG0305|consen  314 NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSG--LLATGGGSADRCIKFWNTNTGARIDSV-------  384 (484)
T ss_pred             CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccC--ceEEcCCCcccEEEEEEcCCCcEeccc-------
Confidence            9999999999999999976665444 667788889999998765  56664  67999999999987754432       


Q ss_pred             CccccCeEEEEEcCCCCEEEEE--eCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          464 SESQSALINQSWSPDGLYITSG--SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       464 ~~~~~~v~~~~~sp~g~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                       ...+.|+++.|++..+-|+++  ..++.|.||++.+  .+++..+.+|...|..++++|||..+++|+.|.++++|++
T Consensus       385 -dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  385 -DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             -ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence             245689999999998777754  4678999999998  8899999999999999999999999999999999999985

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=9.7e-30  Score=214.13  Aligned_cols=279  Identities=13%  Similarity=0.139  Sum_probs=215.2

Q ss_pred             eEEecCCCCeEEEe---ccc--hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          200 LVRTSASPATIHCH---TSN--HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       200 ~~~~~~~d~~i~~~---~~~--~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      .+-+...|.++.+|   +++  ..+.||++.|+|++.+-+ ..+|+||+.|.++++||+.+++.+.++..         .
T Consensus        24 LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~tGk~la~~k~---------~   93 (327)
T KOG0643|consen   24 LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVETGKQLATWKT---------N   93 (327)
T ss_pred             EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEcCCCcEEEEeec---------C
Confidence            34455678888998   555  458999999999999995 89999999999999999999998877743         3


Q ss_pred             CCceeEEEecCCCeEEEEeec-CCCCCeEEEEecCCCC----CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203          275 RWPEDIAWHPQGNSLFSAHTA-DSGDSQISVLNLNKTK----GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH  349 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~-~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  349 (540)
                      .+|..+.|+++|++++.+... -+..+.|.++|++...    ...++..+..   +.+.++.+-|.| .+..|++|..||
T Consensus        94 ~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t---~~skit~a~Wg~-l~~~ii~Ghe~G  169 (327)
T KOG0643|consen   94 SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT---PDSKITSALWGP-LGETIIAGHEDG  169 (327)
T ss_pred             CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC---Cccceeeeeecc-cCCEEEEecCCC
Confidence            568999999999988876211 1355789999998443    2333433333   357799999999 999999999999


Q ss_pred             cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCC
Q 009203          350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFN  429 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (540)
                      .|.+||++++..    ..-....|...|+.+++++|..++++++.|.+-++||.++.+.+..+....++.+.+++|... 
T Consensus       170 ~is~~da~~g~~----~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d-  244 (327)
T KOG0643|consen  170 SISIYDARTGKE----LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD-  244 (327)
T ss_pred             cEEEEEcccCce----eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccc-
Confidence            999999999864    222224588999999999999999999999999999999999999999999999999998652 


Q ss_pred             ceEEEEEcCCC-eEEEEECCCCcceeeeec-----cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          430 LFMVQTGTPGR-QLRLYDIRLRQTEIHAFG-----WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       430 ~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                       ..++.|+.+- .|.--+.+.++-..+.+.     .....++|-++|++++|+|+|+..++|++||.|++.-++.
T Consensus       245 -~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  245 -HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             -eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence             2333333331 122222222221111110     1235689999999999999999999999999999987764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.6e-29  Score=216.48  Aligned_cols=288  Identities=19%  Similarity=0.243  Sum_probs=238.1

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      ..+.||.++|+.++... ...++.+++.|-+.+||.++++.|+.++        .||.+.|++++|++.+.+++++    
T Consensus       142 re~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y--------~GH~GSVNsikfh~s~~L~lTa----  208 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATY--------TGHTGSVNSIKFHNSGLLLLTA----  208 (481)
T ss_pred             hhhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeee--------cccccceeeEEeccccceEEEc----
Confidence            45789999999999987 4779999999999999999999998888        7999999999999999999999    


Q ss_pred             CCCCeEEEEec------CCCCC-------------------------------ceeEEeecCCCCcccceeEEEEeCCCC
Q 009203          297 SGDSQISVLNL------NKTKG-------------------------------RACVTFLDDKPHVKGIINSIIFLPWEN  339 (540)
Q Consensus       297 ~~d~~i~vwd~------~~~~~-------------------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~  339 (540)
                      +.|++-.||..      .....                               ...+..+.   .|.+.|.+..|.. .+
T Consensus       209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt---gH~~vV~a~dWL~-gg  284 (481)
T KOG0300|consen  209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT---GHRAVVSACDWLA-GG  284 (481)
T ss_pred             cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee---ccccceEehhhhc-Cc
Confidence            99999999972      21100                               00111222   4778899999998 99


Q ss_pred             CEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-eeee-ccCcc
Q 009203          340 PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DFKH-QIESK  417 (540)
Q Consensus       340 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~-~~~~~  417 (540)
                      +.+++++.|.+..+||+++++.   ...+  .+|....+.++-+|..+++++.+.|.+.++||++..-. +..+ .+...
T Consensus       285 ~Q~vTaSWDRTAnlwDVEtge~---v~~L--tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt  359 (481)
T KOG0300|consen  285 QQMVTASWDRTANLWDVETGEV---VNIL--TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT  359 (481)
T ss_pred             ceeeeeeccccceeeeeccCce---eccc--cCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence            9999999999999999999985   3333  56999999999999999999999999999999985332 2233 34577


Q ss_pred             EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      +.+..|+.++    .+++|+.|.+|++||++++..++..+.       ..++++.++.+..+.+|+.--.+..|++||++
T Consensus       360 VTS~vF~~dd----~vVSgSDDrTvKvWdLrNMRsplATIR-------tdS~~NRvavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  360 VTSVVFNTDD----RVVSGSDDRTVKVWDLRNMRSPLATIR-------TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             eeEEEEecCC----ceeecCCCceEEEeeeccccCcceeee-------cCCccceeEeecCCceEEeccCCceEEEEecC
Confidence            8899998876    799999999999999999887665542       35688999999888899999899999999999


Q ss_pred             CCCCccccc-----ccccccceeEEEEcCCC--CEEEEEEcCCcEEEEeC
Q 009203          498 YSANKPSQS-----IRAHQKRVFKAVWHYSH--PLLISISSDLNIGLHKI  540 (540)
Q Consensus       498 ~~~~~~~~~-----~~~h~~~i~~l~~s~~~--~~l~s~~~dg~v~iw~l  540 (540)
                      .   ..+..     -.+|...|+|++|..+-  .-|++||-|..+.=|+|
T Consensus       429 G---~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  429 G---NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             C---CccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence            4   43433     35899999999997554  35899999999999975

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.1e-28  Score=211.73  Aligned_cols=284  Identities=18%  Similarity=0.204  Sum_probs=226.3

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +..-.+.|+++.|+++ |.+|++++.|.+++|||..+++...++        ..++..|..++|......++.+++  -.
T Consensus        10 f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti--------~skkyG~~~~~Fth~~~~~i~sSt--k~   78 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTI--------NSKKYGVDLACFTHHSNTVIHSST--KE   78 (311)
T ss_pred             cccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEe--------ecccccccEEEEecCCceEEEccC--CC
Confidence            4455688999999995 999999999999999999999888777        355667888999877776666521  35


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      |.+|+..++.+.   +.++.+.+   |...|++++.+| -++.+++++.|++|++||++..++    +.+.   +...-.
T Consensus        79 d~tIryLsl~dN---kylRYF~G---H~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~c----qg~l---~~~~~p  144 (311)
T KOG1446|consen   79 DDTIRYLSLHDN---KYLRYFPG---HKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKC----QGLL---NLSGRP  144 (311)
T ss_pred             CCceEEEEeecC---ceEEEcCC---CCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCC----ceEE---ecCCCc
Confidence            899999999986   67888887   778999999999 779999999999999999998775    2221   334445


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCC--Ceeeee----ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVG--RADFKH----QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      .++|.|.|-++|++.....|++||++.-  .+...+    ........+.|+|+|   ++++.+...+.+++.|.-++..
T Consensus       145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG---K~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG---KSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC---CEEEEEeCCCcEEEEEccCCcE
Confidence            6899999999999998889999999873  222222    234667889999998   7888899999999999998874


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCCEEEEEEc
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      ....-+..    ....-....+|+||++++++|+.||+|.+|++.+  +..+..+.+ +.+++.++.|+|.-..++|+  
T Consensus       222 ~~tfs~~~----~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t--g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--  293 (311)
T KOG1446|consen  222 KSTFSGYP----NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET--GKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--  293 (311)
T ss_pred             eeeEeecc----CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC--CcEeeEecCCCCCCccccccCCceeeeeec--
Confidence            33222111    1111226779999999999999999999999988  788888887 78899999999987777766  


Q ss_pred             CCcEEEE
Q 009203          532 DLNIGLH  538 (540)
Q Consensus       532 dg~v~iw  538 (540)
                      +..+-+|
T Consensus       294 ~s~l~fw  300 (311)
T KOG1446|consen  294 SSNLVFW  300 (311)
T ss_pred             CceEEEE
Confidence            4566666

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.1e-29  Score=252.80  Aligned_cols=294  Identities=16%  Similarity=0.228  Sum_probs=230.2

Q ss_pred             cccCceEEEEEecCCCcEEEEEe--CCceEEEEEcCCCC----CcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSA--LDGVIRLWQLQSRG----SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT  294 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~--~dg~v~iw~~~~~~----~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~  294 (540)
                      .+...|.+++.+|| +..+|||+  .||.++||+...--    ..........+....|.+.|+|+.|+|||.+||+|  
T Consensus        11 H~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG--   87 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG--   87 (942)
T ss_pred             cCCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec--
Confidence            34567999999996 99999999  99999999875321    11111122223336899999999999999999999  


Q ss_pred             cCCCCCeEEEEecCCC---------------CCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC
Q 009203          295 ADSGDSQISVLNLNKT---------------KGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA  359 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~---------------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  359 (540)
                        +.|+.|.||+....               ..-+++..+.+   |.+.|..++|+| ++.+|++++.|++|.||+..+.
T Consensus        88 --SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~---H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   88 --SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG---HDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             --cCcceEEEeeecccCCcccccccccccccceeeEEEEEec---CCCccceeccCC-CccEEEEecccceEEEEccccc
Confidence              99999999998831               00124455554   788899999999 9999999999999999999998


Q ss_pred             CCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-------eccCccEEEEeecCCCCCceE
Q 009203          360 EDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-------HQIESKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       360 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  432 (540)
                      +.   ...+  .+|.+.|..+.|.|-|++|++-+.|++|++|++.+-.....       .........+.|+|++   .+
T Consensus       162 ~~---~~vl--~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG---~~  233 (942)
T KOG0973|consen  162 EL---LKVL--RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG---HH  233 (942)
T ss_pred             ee---eeee--ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc---Ce
Confidence            64   3333  56999999999999999999999999999999766333221       2334667889999999   67


Q ss_pred             EEEEc----CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC-----CC------------EEEEEeCCCcE
Q 009203          433 VQTGT----PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-----GL------------YITSGSADPVI  491 (540)
Q Consensus       433 l~~~~----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----g~------------~l~sg~~dg~i  491 (540)
                      |++..    .-.++.|.+-.+.....       .+-||..++.++.|+|.     ..            .+|+|+.|++|
T Consensus       234 las~nA~n~~~~~~~IieR~tWk~~~-------~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl  306 (942)
T KOG0973|consen  234 LASPNAVNGGKSTIAIIERGTWKVDK-------DLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL  306 (942)
T ss_pred             ecchhhccCCcceeEEEecCCceeee-------eeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence            87753    23468888877666433       56789999999999982     11            67899999999


Q ss_pred             EEEeccCCCCccccccc-ccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          492 HLFDIRYSANKPSQSIR-AHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       492 ~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .||....  .+++.... --...|.+++|+|||..|+.||.||+|.+..+
T Consensus       307 SVW~T~~--~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  307 SVWNTAL--PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF  354 (942)
T ss_pred             EEEecCC--CCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence            9999976  56655443 33558999999999999999999999998764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.3e-29  Score=217.63  Aligned_cols=272  Identities=16%  Similarity=0.235  Sum_probs=214.4

Q ss_pred             eEEecCCCCeEEEeccc-----------------------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC
Q 009203          200 LVRTSASPATIHCHTSN-----------------------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR  256 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----------------------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~  256 (540)
                      .+++++.|..|++.+.+                       ++|-.|.++|+++.|+| ...+|++|+.|++|+++|+...
T Consensus       126 lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~ILiS~srD~tvKlFDfsK~  204 (430)
T KOG0640|consen  126 LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETILISGSRDNTVKLFDFSKT  204 (430)
T ss_pred             EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhheEEeccCCCeEEEEecccH
Confidence            57888888888888653                       24678999999999999 4999999999999999999875


Q ss_pred             CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC
Q 009203          257 GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP  336 (540)
Q Consensus       257 ~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  336 (540)
                      ...+.+...      ....+|.++.|+|.|.+|++|    ..-.++++||+++.   +|...-.....|.+.|+++.+++
T Consensus       205 saKrA~K~~------qd~~~vrsiSfHPsGefllvg----TdHp~~rlYdv~T~---QcfvsanPd~qht~ai~~V~Ys~  271 (430)
T KOG0640|consen  205 SAKRAFKVF------QDTEPVRSISFHPSGEFLLVG----TDHPTLRLYDVNTY---QCFVSANPDDQHTGAITQVRYSS  271 (430)
T ss_pred             HHHHHHHHh------hccceeeeEeecCCCceEEEe----cCCCceeEEeccce---eEeeecCcccccccceeEEEecC
Confidence            443333222      234679999999999999999    88999999999986   44444334446788999999999


Q ss_pred             CCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCc
Q 009203          337 WENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIES  416 (540)
Q Consensus       337 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  416 (540)
                       ++++.++|+.||.|++||--+++|+   ..+........|.+..|..+|+++++.+.|..+++|.+.+++.+..+...+
T Consensus       272 -t~~lYvTaSkDG~IklwDGVS~rCv---~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg  347 (430)
T KOG0640|consen  272 -TGSLYVTASKDGAIKLWDGVSNRCV---RTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG  347 (430)
T ss_pred             -CccEEEEeccCCcEEeeccccHHHH---HHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence             9999999999999999999998883   333322234689999999999999999999999999999999987654431


Q ss_pred             ------cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCc
Q 009203          417 ------KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPV  490 (540)
Q Consensus       417 ------~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~  490 (540)
                            ......|+....  ..|.---..+.+.-||.++......      ...+|.+.+..+.-||.+..+++++.|..
T Consensus       348 ~tgrq~~rtqAvFNhtEd--yVl~pDEas~slcsWdaRtadr~~l------~slgHn~a~R~i~HSP~~p~FmTcsdD~r  419 (430)
T KOG0640|consen  348 TTGRQKHRTQAVFNHTED--YVLFPDEASNSLCSWDARTADRVAL------LSLGHNGAVRWIVHSPVEPAFMTCSDDFR  419 (430)
T ss_pred             cccchhhhhhhhhcCccc--eEEccccccCceeeccccchhhhhh------cccCCCCCceEEEeCCCCCceeeecccce
Confidence                  222334443331  3344444557899999998765332      23589999999999999999999999999


Q ss_pred             EEEEecc
Q 009203          491 IHLFDIR  497 (540)
Q Consensus       491 i~iwd~~  497 (540)
                      +++|--.
T Consensus       420 aRFWyrr  426 (430)
T KOG0640|consen  420 ARFWYRR  426 (430)
T ss_pred             eeeeeec
Confidence            9999654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=5e-29  Score=213.54  Aligned_cols=280  Identities=15%  Similarity=0.252  Sum_probs=211.9

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      .-.+.|.+|+|||....+++.||.||+||+|+++.. ....+..       ..|.++|.+++|+.||..+++|    +.|
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-------~~~~~PvL~v~WsddgskVf~g----~~D   93 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-------QSHDGPVLDVCWSDDGSKVFSG----GCD   93 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh-------hccCCCeEEEEEccCCceEEee----ccC
Confidence            445789999999965778889999999999999874 2222111       4788999999999999999999    999


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC--EEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP--CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      +.+++||+.+++    +..+.   .|.++|.++.|-+ ...  .|+||+.|.+|++||++....+...      .-.+.+
T Consensus        94 k~~k~wDL~S~Q----~~~v~---~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~------~LPeRv  159 (347)
T KOG0647|consen   94 KQAKLWDLASGQ----VSQVA---AHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATL------QLPERV  159 (347)
T ss_pred             CceEEEEccCCC----eeeee---ecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeee------ecccee
Confidence            999999999873    23333   3788999999987 554  8999999999999999987652222      234567


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee---eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc-e
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK---HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT-E  453 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~  453 (540)
                      +++..-  ..+++++..++.|.+|+++++...+.   ....-...+++...+.   ...+.|+-+|.+.+..+..+.. .
T Consensus       160 Ya~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~---~~~alGsiEGrv~iq~id~~~~~~  234 (347)
T KOG0647|consen  160 YAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK---DGFALGSIEGRVAIQYIDDPNPKD  234 (347)
T ss_pred             eehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC---CceEeeeecceEEEEecCCCCccC
Confidence            776653  47888899999999999987655432   2334445555555544   2358899999999999987532 1


Q ss_pred             eeeeccccc---cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE-
Q 009203          454 IHAFGWKQE---SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI-  529 (540)
Q Consensus       454 ~~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~-  529 (540)
                      ...+.+...   ..+.-..|++|+|+|....|++++.||++.+||-+.  ...+.+...|..+|++..|+.+|.++|-+ 
T Consensus       235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda--r~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA--RTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh--hhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            111211111   111134688899999999999999999999999997  67788888899999999999999987654 


Q ss_pred             EcC
Q 009203          530 SSD  532 (540)
Q Consensus       530 ~~d  532 (540)
                      |+|
T Consensus       313 gYD  315 (347)
T KOG0647|consen  313 GYD  315 (347)
T ss_pred             ecc
Confidence            444

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.4e-28  Score=225.10  Aligned_cols=297  Identities=15%  Similarity=0.155  Sum_probs=222.7

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------hh
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------HV  218 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------~~  218 (540)
                      ..+++|+..|.++.+.|...                               -+.+++-|.+|++||..          .+
T Consensus       161 i~l~hgtk~Vsal~~Dp~Ga-------------------------------R~~sGs~Dy~v~~wDf~gMdas~~~fr~l  209 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGA-------------------------------RFVSGSLDYTVKFWDFQGMDASMRSFRQL  209 (641)
T ss_pred             EeccCCceEEEEeeecCCCc-------------------------------eeeeccccceEEEEecccccccchhhhcc
Confidence            45567888888888887742                               46788999999999875          33


Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeec-----ccccCCCCCCCCceeEEEecCCC-eEEEE
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLS-----TTDCLSPKHRRWPEDIAWHPQGN-SLFSA  292 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~-----~~~~~~~~h~~~V~~~~~~~~~~-~l~s~  292 (540)
                      ...-...|++++|++. |..|++.+.....+|+|-...........     .... ..||...++|.+|+|+.+ .++++
T Consensus       210 ~P~E~h~i~sl~ys~T-g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n-TKGHia~lt~g~whP~~k~~FlT~  287 (641)
T KOG0772|consen  210 QPCETHQINSLQYSVT-GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN-TKGHIAELTCGCWHPDNKEEFLTC  287 (641)
T ss_pred             CcccccccceeeecCC-CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhc-cCCceeeeeccccccCcccceEEe
Confidence            4455678999999995 67777777778899999765433222211     1111 169999999999999765 77888


Q ss_pred             eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203          293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL  372 (540)
Q Consensus       293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  372 (540)
                          +.||++++||++..+....+..-.......-+++.++|+| ++.+||+|..||.|.+|+......  .+.......
T Consensus       288 ----s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v--~p~~~vk~A  360 (641)
T KOG0772|consen  288 ----SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV--RPVMKVKDA  360 (641)
T ss_pred             ----cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc--ccceEeeec
Confidence                9999999999987644333322222223456789999999 999999999999999999854331  233344466


Q ss_pred             CCc--ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-eee---eccCccEEEEeecCCCCCceEEEEEcC------CC
Q 009203          373 HSS--AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DFK---HQIESKCMSVLPNPCDFNLFMVQTGTP------GR  440 (540)
Q Consensus       373 ~~~--~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg  440 (540)
                      |..  .|+||.||++|++|++-+.|+++++||+++.+. +..   .........++|+|+.   .+|++|..      .|
T Consensus       361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~---kli~TGtS~~~~~~~g  437 (641)
T KOG0772|consen  361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD---KLILTGTSAPNGMTAG  437 (641)
T ss_pred             cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc---eEEEecccccCCCCCc
Confidence            877  999999999999999999999999999998544 332   2233455678899988   78888754      57


Q ss_pred             eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      .+.+||..+.......       .-....|..+.|+|.-+.|++|+.||.++||=
T Consensus       438 ~L~f~d~~t~d~v~ki-------~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  438 TLFFFDRMTLDTVYKI-------DISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             eEEEEeccceeeEEEe-------cCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            8999999887754432       12256789999999999999999999999874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=5.4e-30  Score=228.24  Aligned_cols=259  Identities=18%  Similarity=0.226  Sum_probs=213.7

Q ss_pred             eEEecCCCCeEEEeccc-------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203          200 LVRTSASPATIHCHTSN-------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK  272 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  272 (540)
                      .++++..|..|++|+..       .+|.|-.++|+++.|.++ ++++++++.|+.+++|++...+...++        .|
T Consensus       189 tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnvd~~r~~~TL--------sG  259 (459)
T KOG0288|consen  189 TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNVDSLRLRHTL--------SG  259 (459)
T ss_pred             hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeeccchhhhhhh--------cc
Confidence            46788889999999543       568899999999999996 888999999999999999998877777        79


Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV  352 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  352 (540)
                      |.+.|+++.|......+++|    +.|.+|++||+...   .|.+..-.    ...+..|..+   ...+++|..|+.|+
T Consensus       260 HtdkVt~ak~~~~~~~vVsg----s~DRtiK~WDl~k~---~C~kt~l~----~S~cnDI~~~---~~~~~SgH~DkkvR  325 (459)
T KOG0288|consen  260 HTDKVTAAKFKLSHSRVVSG----SADRTIKLWDLQKA---YCSKTVLP----GSQCNDIVCS---ISDVISGHFDKKVR  325 (459)
T ss_pred             cccceeeehhhccccceeec----cccchhhhhhhhhh---heeccccc----cccccceEec---ceeeeecccccceE
Confidence            99999999999877778998    99999999999974   44444321    3456777764   46789999999999


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-----cCccEEEEeecCCC
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-----IESKCMSVLPNPCD  427 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~  427 (540)
                      +||.++..+   ...+  . -.+.|+++..+++|..|++++.|.++.++|+++......+.     .......+.|+|++
T Consensus       326 fwD~Rs~~~---~~sv--~-~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~  399 (459)
T KOG0288|consen  326 FWDIRSADK---TRSV--P-LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG  399 (459)
T ss_pred             EEeccCCce---eeEe--e-cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence            999999875   2222  2 33589999999999999999999999999999887765533     34557789999998


Q ss_pred             CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                         .|+++|+.||.|+||++.++++....-     .......|++++|+|.|.+|++++.++.+.+|.
T Consensus       400 ---~YvaAGS~dgsv~iW~v~tgKlE~~l~-----~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  400 ---SYVAAGSADGSVYIWSVFTGKLEKVLS-----LSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ---ceeeeccCCCcEEEEEccCceEEEEec-----cCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence               799999999999999999988655321     122223799999999999999999999999993

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5.7e-29  Score=235.63  Aligned_cols=258  Identities=19%  Similarity=0.309  Sum_probs=216.0

Q ss_pred             CCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC-CCCCceeE
Q 009203          207 PATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK-HRRWPEDI  280 (540)
Q Consensus       207 d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~  280 (540)
                      ...+.+|+..     .+...+...|+++.|+++ |.+||+|..+|.|.|||....+.+..+        .+ |...|-++
T Consensus       196 g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~--------~~~h~~rvg~l  266 (484)
T KOG0305|consen  196 GQSVYLWSASSGSVTELCSFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTL--------RGSHASRVGSL  266 (484)
T ss_pred             cceEEEEecCCCceEEeEecCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhccccccc--------cCCcCceeEEE
Confidence            5677888654     223444899999999995 999999999999999999988877766        34 89999999


Q ss_pred             EEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC
Q 009203          281 AWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE  360 (540)
Q Consensus       281 ~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  360 (540)
                      +|.  +..+.+|    +.++.|..+|++..+.  .+..+.   +|...|..++|++ ++.++++|+.|+.+.|||.....
T Consensus       267 aW~--~~~lssG----sr~~~I~~~dvR~~~~--~~~~~~---~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~  334 (484)
T KOG0305|consen  267 AWN--SSVLSSG----SRDGKILNHDVRISQH--VVSTLQ---GHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPE  334 (484)
T ss_pred             ecc--CceEEEe----cCCCcEEEEEEecchh--hhhhhh---cccceeeeeEECC-CCCeeccCCCccceEeccCCCcc
Confidence            998  5678888    9999999999997632  222233   4788899999999 99999999999999999996655


Q ss_pred             CccccceeecccCCcceeEEEecc-CCCEEEEEe--CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc
Q 009203          361 DSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAG--ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       361 ~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      .     .+....|...|.+++|+| ...+||+|+  .|++|++||..++..+........+.++.|++.... .....|.
T Consensus       335 p-----~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kE-i~sthG~  408 (484)
T KOG0305|consen  335 P-----KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKE-LLSTHGY  408 (484)
T ss_pred             c-----cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCE-EEEecCC
Confidence            3     334456999999999999 567788865  499999999999999999999999999999997632 2344467


Q ss_pred             CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .++.|.||+..+.....       .+.+|...|..+++||||..+++|+.|.++++|++-.
T Consensus       409 s~n~i~lw~~ps~~~~~-------~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  409 SENQITLWKYPSMKLVA-------ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             CCCcEEEEeccccceee-------eecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            78899999998865433       6679999999999999999999999999999999986

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2e-28  Score=221.38  Aligned_cols=289  Identities=14%  Similarity=0.169  Sum_probs=229.2

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecc----------cccCCCCCCCCceeEEEecCCCe
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLST----------TDCLSPKHRRWPEDIAWHPQGNS  288 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~----------~~~~~~~h~~~V~~~~~~~~~~~  288 (540)
                      +..|.-+|+||+++|| ..+.++++.||+|.=|++.+++...-+...          ......+|...+.+++.++||++
T Consensus       138 ~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky  216 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY  216 (479)
T ss_pred             eccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence            3689999999999996 889999999999999999988744111111          11111378899999999999999


Q ss_pred             EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee
Q 009203          289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL  368 (540)
Q Consensus       289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  368 (540)
                      |++|    +.|..|.||+.++.   ..++.+.+   |.+.|.+++|-. ....+++++.|++|++|+++....   ...+
T Consensus       217 latg----g~d~~v~Iw~~~t~---ehv~~~~g---hr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~---vetl  282 (479)
T KOG0299|consen  217 LATG----GRDRHVQIWDCDTL---EHVKVFKG---HRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSY---VETL  282 (479)
T ss_pred             EEec----CCCceEEEecCccc---chhhcccc---cccceeeeeeec-CccceeeeecCCceEEEehhHhHH---HHHH
Confidence            9999    99999999999987   44555554   789999999988 778899999999999999988654   3333


Q ss_pred             ecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          369 HRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       369 ~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                        .+|.+.|.+|....-++.+-+|+.|+++++|++.....+......+.+-+++|-.+.    .+++|+.+|.|.+|++-
T Consensus       283 --yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~----HfvsGSdnG~IaLWs~~  356 (479)
T KOG0299|consen  283 --YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE----HFVSGSDNGSIALWSLL  356 (479)
T ss_pred             --hCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc----ceeeccCCceEEEeeec
Confidence              569999999999888888888889999999999766655556666777788877664    89999999999999998


Q ss_pred             CCcceeeeeccccccC-----ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC--CcccccccccccceeEEEEcC
Q 009203          449 LRQTEIHAFGWKQESS-----ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA--NKPSQSIRAHQKRVFKAVWHY  521 (540)
Q Consensus       449 ~~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~i~~l~~s~  521 (540)
                      ..+.............     .+..+|++++..|...++|+|+.+|.|++|.+..+.  ..++..+. -.+.|++++|++
T Consensus       357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~  435 (479)
T KOG0299|consen  357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSN  435 (479)
T ss_pred             ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEcc
Confidence            8775443321111111     223489999999999999999999999999998741  23444555 567899999999


Q ss_pred             CCCEEEEE
Q 009203          522 SHPLLISI  529 (540)
Q Consensus       522 ~~~~l~s~  529 (540)
                      +|+.|++|
T Consensus       436 sgk~ivag  443 (479)
T KOG0299|consen  436 SGKRIVAG  443 (479)
T ss_pred             CCCEEEEe
Confidence            99966655

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=1.8e-28  Score=241.52  Aligned_cols=271  Identities=18%  Similarity=0.242  Sum_probs=232.4

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcce-eecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGAS-LLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      |...+.|..|..   .++++++.|+++++|+...+..+.. +        .||.+.|.+++|...+.+|++|    +.|.
T Consensus       207 ~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l--------~GH~g~V~~l~~~~~~~~lvsg----S~D~  271 (537)
T KOG0274|consen  207 DDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRL--------VGHFGGVWGLAFPSGGDKLVSG----STDK  271 (537)
T ss_pred             Ccchhhhheeec---CeEEecCCCceeEEeecccceEEEeec--------cCCCCCceeEEEecCCCEEEEE----ecCC
Confidence            667899999984   3789999999999999998876555 4        6999999999998878899999    9999


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                      ++++||..++   .|...+.+   |.+.|.++...+   ..+++|+.|.+|++|++.++.+   ...+  .+|.++|.++
T Consensus       272 t~rvWd~~sg---~C~~~l~g---h~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~---l~l~--~~h~~~V~~v  337 (537)
T KOG0274|consen  272 TERVWDCSTG---ECTHSLQG---HTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC---LNLL--RGHTGPVNCV  337 (537)
T ss_pred             cEEeEecCCC---cEEEEecC---CCceEEEEEccC---ceEeeccCCceEEEEeccCcce---EEEe--ccccccEEEE
Confidence            9999999987   78888886   678899998854   7788999999999999998875   3333  3499999999


Q ss_pred             EeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC-cceeeeec
Q 009203          381 AGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR-QTEIHAFG  458 (540)
Q Consensus       381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~-~~~~~~~~  458 (540)
                      ..+  +.++++|+.|++|++||+.+++++.... +...+.++.+.+.    ..+++|+.|++|++||+++. ++.     
T Consensus       338 ~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~----~~~~Sgs~D~~IkvWdl~~~~~c~-----  406 (537)
T KOG0274|consen  338 QLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE----NRLLSGSLDTTIKVWDLRTKRKCI-----  406 (537)
T ss_pred             Eec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc----ceEEeeeeccceEeecCCchhhhh-----
Confidence            997  8999999999999999999999988754 4567778877774    28999999999999999988 442     


Q ss_pred             cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203          459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHPLLISISSDLNIGL  537 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~~l~s~~~dg~v~i  537 (540)
                        ..+.+|..-+..+.+  .+++|++++.|+.|++||...  +.++.++.+ |.+.|+.+++.  ...+++++.||.+++
T Consensus       407 --~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~--~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l  478 (537)
T KOG0274|consen  407 --HTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE--GECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKL  478 (537)
T ss_pred             --hhhcCCccccccccc--ccceeEeccccccEEEeeccc--CceeeeeccCCcccEEEeecC--cceEEEEecCCeeEE
Confidence              266788888877766  688999999999999999998  788888888 67889999886  467899999999999


Q ss_pred             EeC
Q 009203          538 HKI  540 (540)
Q Consensus       538 w~l  540 (540)
                      ||+
T Consensus       479 ~dl  481 (537)
T KOG0274|consen  479 WDL  481 (537)
T ss_pred             Eec
Confidence            996

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.1e-27  Score=235.86  Aligned_cols=277  Identities=15%  Similarity=0.125  Sum_probs=197.6

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeec-----ccccCCCCCCCCceeEEEec-CCCeEEEEeecCC
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLS-----TTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTADS  297 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~-----~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~  297 (540)
                      ..|.....++| +..+++++.+..+..|+...+..+..+..     .......+|.+.|.+++|+| ++++|+++    +
T Consensus        21 ~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg----S   95 (493)
T PTZ00421         21 LNVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTA----S   95 (493)
T ss_pred             eccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE----e
Confidence            45666666664 55567777777777777654432111110     00011258999999999999 88899999    9


Q ss_pred             CCCeEEEEecCCCCC----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203          298 GDSQISVLNLNKTKG----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH  373 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  373 (540)
                      .|++|++||+.++..    ...+..+.+   |...|.+++|+|..+++|++|+.|++|+|||+.+++.   ..  ...+|
T Consensus        96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~g---H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~---~~--~l~~h  167 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNISDPIVHLQG---HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA---VE--VIKCH  167 (493)
T ss_pred             CCCEEEEEecCCCccccccCcceEEecC---CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE---EE--EEcCC
Confidence            999999999976421    123444554   6788999999994457999999999999999998764   22  23568


Q ss_pred             CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccEEEEeecCCCCCceEEEEE---cCCCeEEEEECC
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKCMSVLPNPCDFNLFMVQTG---TPGRQLRLYDIR  448 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~---~~dg~v~i~d~~  448 (540)
                      ...|.+++|+|+|.+|++++.|+.|++||+++++.+......  .....+.|.+.+.  .++.+|   +.|+.|++||++
T Consensus       168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~--~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD--LIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC--eEEEEecCCCCCCeEEEEeCC
Confidence            899999999999999999999999999999998876654332  2234566777652  234444   357999999998


Q ss_pred             CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcccccccc-cccceeEEEEcCC
Q 009203          449 LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYS  522 (540)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~  522 (540)
                      +.........     ..+...+....|++++++|++|+ .|+.|++||+.+  +.++..... +..++.+++|.|.
T Consensus       246 ~~~~p~~~~~-----~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~--~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        246 KMASPYSTVD-----LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN--ERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CCCCceeEec-----cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC--CceEEEeeccCCCCCcceEeccc
Confidence            7664443221     12234566678999999999887 599999999997  555544432 4456788888874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.97  E-value=2.2e-27  Score=224.78  Aligned_cols=378  Identities=18%  Similarity=0.245  Sum_probs=262.7

Q ss_pred             CCeeeecCCcceeeEEEEcccccccC-----CCCc--cEEEEeecCCCceEEecccccccceEEe-------cCCCCeEE
Q 009203          146 GSSTQASPAAHSIGIVKVKGEKSHRN-----SSDS--EIVEVRDRGTKRKFEQKEHRELIPLVRT-------SASPATIH  211 (540)
Q Consensus       146 ~~~~~~~~h~~~v~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~d~~i~  211 (540)
                      ...+.+.||..+|+|+.+-|.....+     +.|.  .++++.+......+.+.+|..-+.++.-       ...|+++.
T Consensus        45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~  124 (764)
T KOG1063|consen   45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVS  124 (764)
T ss_pred             eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEE
Confidence            34567789999999999998877333     4455  3443443444444444555544433221       13456666


Q ss_pred             Eecc------------------------------------------------c-------hhcccccCceEEEEEecCCC
Q 009203          212 CHTS------------------------------------------------N-------HVSSLHKRKLRSLSLNPVNE  236 (540)
Q Consensus       212 ~~~~------------------------------------------------~-------~~~~~h~~~V~~l~~spd~~  236 (540)
                      +|+.                                                .       ..+.||.+.|.+++|...++
T Consensus       125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~  204 (764)
T KOG1063|consen  125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG  204 (764)
T ss_pred             EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence            6633                                                1       22689999999999986533


Q ss_pred             --cEEEEEeCCceEEEEEcCCCCCcc-----------------------eeecccccCCCCCCCCceeEEEecCCCeEEE
Q 009203          237 --QLFVTSALDGVIRLWQLQSRGSGA-----------------------SLLSTTDCLSPKHRRWPEDIAWHPQGNSLFS  291 (540)
Q Consensus       237 --~~l~tg~~dg~v~iw~~~~~~~~~-----------------------~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s  291 (540)
                        .+||++|.|..||||.+.-.....                       .+....+....||.++|.++.|+|.+..|++
T Consensus       205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS  284 (764)
T KOG1063|consen  205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS  284 (764)
T ss_pred             CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence              489999999999999875433111                       1222333444699999999999999988999


Q ss_pred             EeecCCCCCeEEEEecCCCCCceeE-EeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203          292 AHTADSGDSQISVLNLNKTKGRACV-TFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       292 ~~~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                      +    +.|.++.+|...+..+.... -.+....+..+..++.-|+| +++.+++-+.-|..++|...... .|. +....
T Consensus       285 A----SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~-~w~-~~~~i  357 (764)
T KOG1063|consen  285 A----SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKT-FWT-QEPVI  357 (764)
T ss_pred             c----ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCcc-cee-ecccc
Confidence            9    99999999988765432222 22233233345588999999 99999999999999999933322 121 22233


Q ss_pred             ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee-------eeecc-----------------------------
Q 009203          371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD-------FKHQI-----------------------------  414 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~-----------------------------  414 (540)
                      .+|.+.|.+++|.|.|.+|++.+.|.+-|+|-.-..+..       +.|..                             
T Consensus       358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP  437 (764)
T KOG1063|consen  358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP  437 (764)
T ss_pred             ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence            679999999999999999999999988777654310000       00000                             


Q ss_pred             --------------------------------------------------------------------------------
Q 009203          415 --------------------------------------------------------------------------------  414 (540)
Q Consensus       415 --------------------------------------------------------------------------------  414 (540)
                                                                                                      
T Consensus       438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE  517 (764)
T KOG1063|consen  438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE  517 (764)
T ss_pred             HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence                                                                                            


Q ss_pred             -------CccEEEEeecCCCCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203          415 -------ESKCMSVLPNPCDFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI  482 (540)
Q Consensus       415 -------~~~~~~~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  482 (540)
                             +..+.+++.+|.+   .++++++..     ..|++|+..+.....       .+.+|.-.|+.++|||||++|
T Consensus       518 v~KLYGHGyEv~~l~~s~~g---nliASaCKS~~~ehAvI~lw~t~~W~~~~-------~L~~HsLTVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTG---NLIASACKSSLKEHAVIRLWNTANWLQVQ-------ELEGHSLTVTRLAFSPDGRYL  587 (764)
T ss_pred             hHHhccCceeEEEEEecCCC---CEEeehhhhCCccceEEEEEeccchhhhh-------eecccceEEEEEEECCCCcEE
Confidence                   1122333333333   466666543     248889888766432       567899999999999999999


Q ss_pred             EEEeCCCcEEEEeccCCC--CcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          483 TSGSADPVIHLFDIRYSA--NKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       483 ~sg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++.+.|.++.+|......  .......+.|..-|++..|+|++.+++|+|.|.+|+||.+
T Consensus       588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            999999999999986521  1123346789999999999999999999999999999974

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=1.4e-28  Score=206.61  Aligned_cols=241  Identities=20%  Similarity=0.220  Sum_probs=203.5

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA  350 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  350 (540)
                      .+|...|.+++|+.+|..|+++    +.|+++.+|++...   .....+... .|.+.|-.++|+|...++|++++.|.+
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasg----s~dktv~v~n~e~~---r~~~~~~~~-gh~~svdql~w~~~~~d~~atas~dk~   88 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASG----SFDKTVSVWNLERD---RFRKELVYR-GHTDSVDQLCWDPKHPDLFATASGDKT   88 (313)
T ss_pred             hhhhhcceEEEEcccCceeeec----ccCCceEEEEecch---hhhhhhccc-CCCcchhhheeCCCCCcceEEecCCce
Confidence            5788999999999999999999    99999999999865   223333333 356679999999989999999999999


Q ss_pred             EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203          351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (540)
                      |++||++.+++   ...+.   ..+.-.-+.|+|+|.++++++.|..|.+.|.++.+.+...+....+..+.|+-++   
T Consensus        89 ir~wd~r~~k~---~~~i~---~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n---  159 (313)
T KOG1407|consen   89 IRIWDIRSGKC---TARIE---TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN---  159 (313)
T ss_pred             EEEEEeccCcE---EEEee---ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCC---
Confidence            99999999986   22222   2334456889999999999999999999999999888888877788888888544   


Q ss_pred             eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      .+++.....|+|.|......+.       ...++.|.....||.|+|+|+++|+|+.|-.+.+||++.  ..+++.+..+
T Consensus       160 d~Fflt~GlG~v~ILsypsLkp-------v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E--LiC~R~isRl  230 (313)
T KOG1407|consen  160 DLFFLTNGLGCVEILSYPSLKP-------VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE--LICERCISRL  230 (313)
T ss_pred             CEEEEecCCceEEEEecccccc-------ccccccCCcceEEEEECCCCceEeeccccceeeccChhH--hhhheeeccc
Confidence            3555556679999988875443       336788999999999999999999999999999999997  7888999999


Q ss_pred             ccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203          511 QKRVFKAVWHYSHPLLISISSDLNIGL  537 (540)
Q Consensus       511 ~~~i~~l~~s~~~~~l~s~~~dg~v~i  537 (540)
                      .-+|..+.|+.||++||+||+|..|-|
T Consensus       231 dwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             cCceEEEEeccCcceeeccCccceEEe
Confidence            999999999999999999999988765

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.9e-28  Score=209.24  Aligned_cols=275  Identities=16%  Similarity=0.194  Sum_probs=218.8

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcC------CCCC----------
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQ------SRGS----------  258 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~------~~~~----------  258 (540)
                      .+.+++.|.+.++|..+     ..+.||.+.|+|+.|++ .+.++++++.|++..||...      ....          
T Consensus       162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~  240 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE  240 (481)
T ss_pred             ceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence            46788899999999765     34789999999999999 59999999999999999721      1000          


Q ss_pred             ------c-----------ceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecC
Q 009203          259 ------G-----------ASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDD  321 (540)
Q Consensus       259 ------~-----------~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~  321 (540)
                            .           .++... .+...||...|.++.|...|+.++++    +.|.+-.+||++++   ..+..+.+
T Consensus       241 e~sDe~~~d~d~~~~sD~~tiRvP-l~~ltgH~~vV~a~dWL~gg~Q~vTa----SWDRTAnlwDVEtg---e~v~~LtG  312 (481)
T KOG0300|consen  241 EHSDEHNRDTDSSEKSDGHTIRVP-LMRLTGHRAVVSACDWLAGGQQMVTA----SWDRTANLWDVETG---EVVNILTG  312 (481)
T ss_pred             hcccccccccccccccCCceeeee-eeeeeccccceEehhhhcCcceeeee----eccccceeeeeccC---ceeccccC
Confidence                  0           011111 11225899999999999999999999    99999999999997   66888876


Q ss_pred             CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEE
Q 009203          322 KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGF  401 (540)
Q Consensus       322 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iw  401 (540)
                         |....+.++-+| +..++++.+.|.+.++||++..-  .  .....++|...|+++.|.- +..+++|+.|.+|++|
T Consensus       313 ---Hd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI--~--sV~VFQGHtdtVTS~vF~~-dd~vVSgSDDrTvKvW  383 (481)
T KOG0300|consen  313 ---HDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI--Q--SVAVFQGHTDTVTSVVFNT-DDRVVSGSDDRTVKVW  383 (481)
T ss_pred             ---cchhccccccCC-cceEEEEeccCceeEeccchhhc--c--eeeeecccccceeEEEEec-CCceeecCCCceEEEe
Confidence               667799999999 99999999999999999999543  2  2333478999999999986 4668999999999999


Q ss_pred             ECCCCC-eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-
Q 009203          402 DAGVGR-ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-  479 (540)
Q Consensus       402 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-  479 (540)
                      |+++.. ++........+..+..+...   .+++.-..+..|++||++........   ...-.+|..-|+|++|..+. 
T Consensus       384 dLrNMRsplATIRtdS~~NRvavs~g~---~iIAiPhDNRqvRlfDlnG~RlaRlP---rtsRqgHrRMV~c~AW~eehp  457 (481)
T KOG0300|consen  384 DLRNMRSPLATIRTDSPANRVAVSKGH---PIIAIPHDNRQVRLFDLNGNRLARLP---RTSRQGHRRMVTCCAWLEEHP  457 (481)
T ss_pred             eeccccCcceeeecCCccceeEeecCC---ceEEeccCCceEEEEecCCCccccCC---cccccccceeeeeeeccccCc
Confidence            999754 46667777778877777655   58888888999999999865532221   11346899999999998654 


Q ss_pred             -CEEEEEeCCCcEEEEeccC
Q 009203          480 -LYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       480 -~~l~sg~~dg~i~iwd~~~  498 (540)
                       .-|++++.|..+.-|++..
T Consensus       458 ~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  458 ACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             ccccccccccceeeeeEecc
Confidence             3488899999999999986

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.3e-29  Score=207.79  Aligned_cols=243  Identities=17%  Similarity=0.274  Sum_probs=198.7

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC-cceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCCCCC
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS-GASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADSGDS  300 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~  300 (540)
                      .+.+..|+|++.....+++++.||+++|||...... +..+        ..|...|.++.|++. +..++++    +.|+
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~--------kEH~~EV~Svdwn~~~r~~~lts----SWD~  127 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKF--------KEHKREVYSVDWNTVRRRIFLTS----SWDG  127 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHH--------HhhhhheEEeccccccceeEEee----ccCC
Confidence            368999999998788999999999999999654332 1111        579999999999985 4466777    9999


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                      +|++|+...+   ..+.++.+   |...|...+|+|..++++++++.|+++++||++....   ...  ...|...|.++
T Consensus       128 TiKLW~~~r~---~Sv~Tf~g---h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~~~--i~ah~~Eil~c  196 (311)
T KOG0277|consen  128 TIKLWDPNRP---NSVQTFNG---HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---FMS--IEAHNSEILCC  196 (311)
T ss_pred             ceEeecCCCC---cceEeecC---CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---eeE--EEeccceeEee
Confidence            9999999876   44777776   6788999999999999999999999999999987642   233  45699999999


Q ss_pred             Eecc-CCCEEEEEeCCCeEEEEECCCCCe-eee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          381 AGMQ-QKQIVLSAGADKRIIGFDAGVGRA-DFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       381 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      .|+. +.+.+++|+.|+.|+.||+++-+. +.. ..++-.+..+.|+|...  .+|++++.|-+++|||.........  
T Consensus       197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--~lLaSasYDmT~riw~~~~~ds~~e--  272 (311)
T KOG0277|consen  197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--SLLASASYDMTVRIWDPERQDSAIE--  272 (311)
T ss_pred             cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--hHhhhccccceEEecccccchhhhh--
Confidence            9987 678899999999999999998543 333 34456778899999765  4899999999999999986554332  


Q ss_pred             ccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEec
Q 009203          458 GWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDI  496 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~  496 (540)
                          +..-|..-|..+.||+ ++.++|+.+.|+.++||+.
T Consensus       273 ----~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 ----TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ----hhhccceEEeccccccccCceeeecccccceeeecc
Confidence                3456888899999998 6789999999999999984

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=9.7e-29  Score=225.30  Aligned_cols=289  Identities=14%  Similarity=0.240  Sum_probs=238.2

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      ...|..-|.++.+|.. .+++.||+ .|.|+|||+..... +......+|.  .....|.++...|||+.|++|    +.
T Consensus       415 tL~HGEvVcAvtIS~~-trhVyTgG-kgcVKVWdis~pg~-k~PvsqLdcl--~rdnyiRSckL~pdgrtLivG----Ge  485 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISQPGN-KSPVSQLDCL--NRDNYIRSCKLLPDGRTLIVG----GE  485 (705)
T ss_pred             hhccCcEEEEEEecCC-cceeEecC-CCeEEEeeccCCCC-CCcccccccc--CcccceeeeEecCCCceEEec----cc
Confidence            3578888999999985 88899987 47899999976532 3333344443  345779999999999999999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      -.++.|||+......... .+..   ..-.+.+++.+| |.+..+++..||.|.|||+.+...     +-...+|.+.+.
T Consensus       486 astlsiWDLAapTprika-elts---sapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~-----VrqfqGhtDGas  555 (705)
T KOG0639|consen  486 ASTLSIWDLAAPTPRIKA-ELTS---SAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTL-----VRQFQGHTDGAS  555 (705)
T ss_pred             cceeeeeeccCCCcchhh-hcCC---cchhhhhhhcCC-ccceeeeeccCCcEEEEEccccee-----eecccCCCCCce
Confidence            999999999876331111 1111   123477899999 999999999999999999998764     333477999999


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG  458 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  458 (540)
                      ||..++||..|.+|+-|.+||.||++.++.+..+.....+.++..+|.+   .+++.|-.++.+.|......+..     
T Consensus       556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~---dWlavGMens~vevlh~skp~ky-----  627 (705)
T KOG0639|consen  556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTG---DWLAVGMENSNVEVLHTSKPEKY-----  627 (705)
T ss_pred             eEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCc---cceeeecccCcEEEEecCCccce-----
Confidence            9999999999999999999999999999999999999999999999988   69999999999998887755432     


Q ss_pred             cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                         .+.-|.+.|.++.|.+.|+++++.+.|+.+..|.+..  +..+...+ ...+|.++..+-|.++||||+.|....||
T Consensus       628 ---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy--GasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  628 ---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--GASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             ---eecccccEEEEEEecccCceeeecCchhhhhhccCcc--ccceeecc-ccCcceeeeeccCceEEEecCCCcceEEE
Confidence               2345888999999999999999999999999999887  56565555 35589999999999999999999988888


Q ss_pred             eC
Q 009203          539 KI  540 (540)
Q Consensus       539 ~l  540 (540)
                      .+
T Consensus       702 eV  703 (705)
T KOG0639|consen  702 EV  703 (705)
T ss_pred             EE
Confidence            64

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.5e-27  Score=191.98  Aligned_cols=297  Identities=20%  Similarity=0.239  Sum_probs=223.0

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcc------eee-cccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGA------SLL-STTDCLSPKHRRWPEDIAWHPQGNSLFSAHT  294 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~------~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~  294 (540)
                      .+..|.+++|+| .|.+.+.|+...+++|.....--.++      ... ...-.....|.+.|.|.+|+|+|.+|++|  
T Consensus        31 dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg--  107 (350)
T KOG0641|consen   31 DSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG--  107 (350)
T ss_pred             chhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec--
Confidence            346799999999 59999999999999987553211110      000 00001114688999999999999999999  


Q ss_pred             cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC---CCCEEEEEe-cCCcEEEEecCCCCCccccceeec
Q 009203          295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW---ENPCFATGG-SDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                        +.|.+|++.-++.......-..++. .-|.+.|..++|..+   .+.+|++++ .|..|++-|-.+++.   +..+  
T Consensus       108 --sndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~---~~a~--  179 (350)
T KOG0641|consen  108 --SNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG---FHAL--  179 (350)
T ss_pred             --CCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc---ceee--
Confidence              9999999987664311110011111 136788999999741   345667665 466777778888775   3444  


Q ss_pred             ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc--------CccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203          371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI--------ESKCMSVLPNPCDFNLFMVQTGTPGRQL  442 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~dg~v  442 (540)
                      .+|++.|.++. +=+|-++++|+.|.+|++||++-..++.....        ...+.+++.+|.+   ++|++|..|...
T Consensus       180 sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg---rll~sg~~dssc  255 (350)
T KOG0641|consen  180 SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG---RLLASGHADSSC  255 (350)
T ss_pred             cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc---ceeeeccCCCce
Confidence            56999998874 23589999999999999999998877654322        2567788889988   899999999999


Q ss_pred             EEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC--CcccccccccccceeEEEEc
Q 009203          443 RLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA--NKPSQSIRAHQKRVFKAVWH  520 (540)
Q Consensus       443 ~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~i~~l~~s  520 (540)
                      .+||++.+....       .+..|...|.++.|||...|+++++.|..|++-|++..-  .-++.....|...+..+.|+
T Consensus       256 ~lydirg~r~iq-------~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh  328 (350)
T KOG0641|consen  256 MLYDIRGGRMIQ-------RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH  328 (350)
T ss_pred             EEEEeeCCceee-------eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence            999999887544       446789999999999999999999999999999998411  11333445799999999999


Q ss_pred             CCCCEEEEEEcCCcEEEEeC
Q 009203          521 YSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       521 ~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |..-.+++.+.|.++.+|-+
T Consensus       329 ~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  329 PQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             CccceeeeccCcceEEEecc
Confidence            99999999999999999965

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.7e-27  Score=203.85  Aligned_cols=273  Identities=15%  Similarity=0.188  Sum_probs=211.8

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      -.+.|+.|.|+|. +..|+.+++||++++|++........+         .|..++.+++|.+ ...+++|    +.||.
T Consensus        12 P~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~---------~~~~plL~c~F~d-~~~~~~G----~~dg~   76 (323)
T KOG1036|consen   12 PEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKF---------KHGAPLLDCAFAD-ESTIVTG----GLDGQ   76 (323)
T ss_pred             ChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhhe---------ecCCceeeeeccC-CceEEEe----ccCce
Confidence            3578999999994 777888889999999999987544433         6889999999987 4577888    99999


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      |+.+|++++..   . .+.   .|...|.||.+++ ....+++|+.|++|++||.+....   ...   ......|.++.
T Consensus        77 vr~~Dln~~~~---~-~ig---th~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~---~~~---~d~~kkVy~~~  142 (323)
T KOG1036|consen   77 VRRYDLNTGNE---D-QIG---THDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVV---VGT---FDQGKKVYCMD  142 (323)
T ss_pred             EEEEEecCCcc---e-eec---cCCCceEEEEeec-cCCeEEEcccCccEEEEecccccc---ccc---cccCceEEEEe
Confidence            99999998733   2 222   3678899999999 788899999999999999997443   111   12345788888


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeee---eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc---eee
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADF---KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT---EIH  455 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---~~~  455 (540)
                      .+  |+.|++|+.|..+.+||+++.....   .......+.+++..|..   .-+++++-||.|.+=.++....   ...
T Consensus       143 v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~---eGy~~sSieGRVavE~~d~s~~~~skky  217 (323)
T KOG1036|consen  143 VS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG---EGYVVSSIEGRVAVEYFDDSEEAQSKKY  217 (323)
T ss_pred             cc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC---CceEEEeecceEEEEccCCchHHhhhce
Confidence            75  7889999999999999999876644   34556677788888844   3477889999998866665421   111


Q ss_pred             eecccccc---CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          456 AFGWKQES---SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       456 ~~~~~~~~---~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      .|......   ..--.+|++++|+|-...||||+.||.|.+||+.+  .+.+..+......|.+++|+.||..||.++
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~--rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN--RKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc--hhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            11111111   11234899999999999999999999999999998  788888887778899999999999999886

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=9.7e-28  Score=236.35  Aligned_cols=262  Identities=18%  Similarity=0.257  Sum_probs=218.5

Q ss_pred             eEEecCCCCeEEEeccc-----hh-cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HV-SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~-~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      .+.+++.+.++.+|+..     .. +.||.+.|++++|.. ++.+|++|+.|.++++||..++++...+        .||
T Consensus       220 ~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l--------~gh  290 (537)
T KOG0274|consen  220 FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSL--------QGH  290 (537)
T ss_pred             eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEe--------cCC
Confidence            36678899999999765     33 789999999999997 6889999999999999999999998888        689


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      ...|.++...  +..+++|    +.|.+|++|++.++   .++..+.+   |.++|.++..   ++.++++|+.|++|++
T Consensus       291 ~stv~~~~~~--~~~~~sg----s~D~tVkVW~v~n~---~~l~l~~~---h~~~V~~v~~---~~~~lvsgs~d~~v~V  355 (537)
T KOG0274|consen  291 TSSVRCLTID--PFLLVSG----SRDNTVKVWDVTNG---ACLNLLRG---HTGPVNCVQL---DEPLLVSGSYDGTVKV  355 (537)
T ss_pred             CceEEEEEcc--CceEeec----cCCceEEEEeccCc---ceEEEecc---ccccEEEEEe---cCCEEEEEecCceEEE
Confidence            9999888775  4577777    99999999999976   77888876   7889999999   4689999999999999


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC-CeeeeeccCccEE-EEeecCCCCCce
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG-RADFKHQIESKCM-SVLPNPCDFNLF  431 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~  431 (540)
                      ||+.++++   ...+  .+|...|.++.+.+. ..+++|+.|+.|++||+++. +++.......... .+.+..     .
T Consensus       356 W~~~~~~c---l~sl--~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~-----~  424 (537)
T KOG0274|consen  356 WDPRTGKC---LKSL--SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD-----N  424 (537)
T ss_pred             EEhhhcee---eeee--cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccccc-----c
Confidence            99999887   3444  559999999988654 89999999999999999999 7777655544333 333332     5


Q ss_pred             EEEEEcCCCeEEEEECCCCcceeeeeccccccCc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc
Q 009203          432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE-SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI  507 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~  507 (540)
                      +|++++.|++|++||..++++....       .+ |...|+.+++.  ...+++++.||.+.+||+.+  +.+...+
T Consensus       425 ~Lvs~~aD~~Ik~WD~~~~~~~~~~-------~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~--~~~~~~l  490 (537)
T KOG0274|consen  425 FLVSSSADGTIKLWDAEEGECLRTL-------EGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS--GTLIRTL  490 (537)
T ss_pred             eeEeccccccEEEeecccCceeeee-------ccCCcccEEEeecC--cceEEEEecCCeeEEEeccc--Cchhhhh
Confidence            8999999999999999998875532       33 66788888875  46788889999999999998  6666655

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.5e-27  Score=203.56  Aligned_cols=296  Identities=13%  Similarity=0.151  Sum_probs=209.4

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcce-eecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGAS-LLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +|+||.+.|++|+|+.| |+.|||++.|++|+||++.+-..... ....  .   -.-+..+.++|.||-+-++...   
T Consensus        81 ~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~--n---ve~dhpT~V~FapDc~s~vv~~---  151 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQ--N---VEYDHPTRVVFAPDCKSVVVSV---  151 (420)
T ss_pred             hhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhc--c---ccCCCceEEEECCCcceEEEEE---
Confidence            57999999999999996 99999999999999999976332111 1000  0   1112357899999987554442   


Q ss_pred             CCCCeEEEEecCCCCC---ceeEEee---cCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203          297 SGDSQISVLNLNKTKG---RACVTFL---DDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~---~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                      -...++++|.+.....   .......   ..+..|...+..+-... ++.+|++++.|..|.+|++. |+.   +..+. 
T Consensus       152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~---L~~id-  225 (420)
T KOG2096|consen  152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQL---LQSID-  225 (420)
T ss_pred             ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cce---eeeec-
Confidence            5677899997753221   1111111   12224566677777777 88999999999999999999 554   23332 


Q ss_pred             ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC---CCCe------eeeeccCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203          371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG---VGRA------DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ  441 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  441 (540)
                       .....-+..+.||+|+++++++-.-.|++|.+-   .|..      .....+...+.+++|+++.   ..+++.+.||+
T Consensus       226 -tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S---~r~vtvSkDG~  301 (420)
T KOG2096|consen  226 -TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS---TRAVTVSKDGK  301 (420)
T ss_pred             -cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc---ceeEEEecCCc
Confidence             234455677899999999999999999999863   2222      1223456788899999988   78999999999


Q ss_pred             EEEEECCCCcc------eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-ccccce
Q 009203          442 LRLYDIRLRQT------EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-AHQKRV  514 (540)
Q Consensus       442 v~i~d~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~i  514 (540)
                      +++||.+-.-.      .+...  ...+....+....+.++|.|..||.+. ...+.+|..+.  ++....+. .|...|
T Consensus       302 wriwdtdVrY~~~qDpk~Lk~g--~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~--g~~~~~~e~~h~~~I  376 (420)
T KOG2096|consen  302 WRIWDTDVRYEAGQDPKILKEG--SAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASED--GKDYPELEDIHSTTI  376 (420)
T ss_pred             EEEeeccceEecCCCchHhhcC--CcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEccc--CccchhHHHhhcCce
Confidence            99999873211      11111  012223344556899999999998774 46699999988  55554443 689999


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          515 FKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       515 ~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      .+++|+++|++++++| |..+++.
T Consensus       377 s~is~~~~g~~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  377 SSISYSSDGKYIATCG-DRYVRVI  399 (420)
T ss_pred             eeEEecCCCcEEeeec-ceeeeee
Confidence            9999999999999987 7777775

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=4.8e-27  Score=232.19  Aligned_cols=252  Identities=15%  Similarity=0.142  Sum_probs=182.3

Q ss_pred             EeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCc-----ee
Q 009203          242 SALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGR-----AC  315 (540)
Q Consensus       242 g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~-----~~  315 (540)
                      |+.++.|++|+......+..+        .+|.+.|.+++|+|+ +.+|++|    +.|+.|++||+.++...     ..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L--------~gH~~~V~~lafsP~~~~lLASg----S~DgtIrIWDi~t~~~~~~~i~~p  117 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKL--------KGHTSSILDLQFNPCFSEILASG----SEDLTIRVWEIPHNDESVKEIKDP  117 (568)
T ss_pred             CCceeEEEeeecCCCceEEEE--------cCCCCCEEEEEEcCCCCCEEEEE----eCCCeEEEEECCCCCccccccccc
Confidence            667899999998765443333        589999999999997 7899999    99999999999864210     12


Q ss_pred             EEeecCCCCcccceeEEEEeCCCCC-EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203          316 VTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA  394 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  394 (540)
                      +..+.   .|...|.+++|+| ++. +|++++.|++|+|||+++++..   ..+   .|...|.+++|+|+|.+|++++.
T Consensus       118 ~~~L~---gH~~~V~sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~~---~~i---~~~~~V~SlswspdG~lLat~s~  187 (568)
T PTZ00420        118 QCILK---GHKKKISIIDWNP-MNYYIMCSSGFDSFVNIWDIENEKRA---FQI---NMPKKLSSLKWNIKGNLLSGTCV  187 (568)
T ss_pred             eEEee---cCCCcEEEEEECC-CCCeEEEEEeCCCeEEEEECCCCcEE---EEE---ecCCcEEEEEECCCCCEEEEEec
Confidence            22344   3678899999999 665 4679999999999999988642   122   25578999999999999999999


Q ss_pred             CCeEEEEECCCCCeeeeeccC-ccEE--EE---eecCCCCCceEEEEEcCCC----eEEEEECCCCcceeeeeccccccC
Q 009203          395 DKRIIGFDAGVGRADFKHQIE-SKCM--SV---LPNPCDFNLFMVQTGTPGR----QLRLYDIRLRQTEIHAFGWKQESS  464 (540)
Q Consensus       395 dg~i~iwd~~~~~~~~~~~~~-~~~~--~~---~~~~~~~~~~~l~~~~~dg----~v~i~d~~~~~~~~~~~~~~~~~~  464 (540)
                      |+.|++||++++..+.....+ +.+.  .+   .+++++   .++++++.++    +|+|||++....++...    .+.
T Consensus       188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~---~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~----~ld  260 (568)
T PTZ00420        188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD---NYILSTGFSKNNMREMKLWDLKNTTSALVTM----SID  260 (568)
T ss_pred             CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC---CEEEEEEcCCCCccEEEEEECCCCCCceEEE----Eec
Confidence            999999999999887654332 2221  11   233544   4677766553    79999999755444332    222


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203          465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH  523 (540)
Q Consensus       465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~  523 (540)
                      .+.+.+......++|.++++|+.|+.|++|++..+....+..+. +..++.+++|.|..
T Consensus       261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence            33344444444556899999999999999999864222333333 56788899999864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2.9e-28  Score=220.41  Aligned_cols=260  Identities=18%  Similarity=0.297  Sum_probs=201.2

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceee--cccccCCCCCCCCceeEEEecCCC-eEEEEeecCC
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLL--STTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADS  297 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~--~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~  297 (540)
                      -|.+.|+.+.+-|++..++|+++..+.|.|||..+........  ........||.+.=.+++|++... .|+++    +
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~----~  197 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG----S  197 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec----c
Confidence            6889999999999988999999999999999998755433221  111112258888778899998654 78888    9


Q ss_pred             CCCeEEEEecCCCCC----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203          298 GDSQISVLNLNKTKG----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH  373 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  373 (540)
                      .|+.|++||+.....    ......+.   .|.+.|..++|++.+..+|++++.|+.+.|||++++..   .......+|
T Consensus       198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~---~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~---~~~~~~~ah  271 (422)
T KOG0264|consen  198 DDHTICLWDINAESKEDKVVDPKTIFS---GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS---KPSHSVKAH  271 (422)
T ss_pred             CCCcEEEEeccccccCCccccceEEee---cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC---CCccccccc
Confidence            999999999986543    12233444   37889999999998899999999999999999996321   223334679


Q ss_pred             CcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          374 SSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       374 ~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      .+.|+|++|+| ++..||+|+.|++|++||+|+..                                            .
T Consensus       272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------------------------------------------~  307 (422)
T KOG0264|consen  272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------------------------------------------K  307 (422)
T ss_pred             CCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------------------------------------------c
Confidence            99999999998 45566677777777777777432                                            1


Q ss_pred             eeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeccCCCC------------cccccccccccceeEEEE
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIRYSAN------------KPSQSIRAHQKRVFKAVW  519 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~~------------~~~~~~~~h~~~i~~l~~  519 (540)
                      .++      .+.+|...|.+|.|||+ ...||+++.|+.+.|||+..-..            +++..-.||.+.|..+.|
T Consensus       308 ~lh------~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW  381 (422)
T KOG0264|consen  308 PLH------TFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW  381 (422)
T ss_pred             Cce------eccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccC
Confidence            222      45678999999999995 56789999999999999975211            234566789999999999


Q ss_pred             cCCCC-EEEEEEcCCcEEEEeC
Q 009203          520 HYSHP-LLISISSDLNIGLHKI  540 (540)
Q Consensus       520 s~~~~-~l~s~~~dg~v~iw~l  540 (540)
                      +|... .|+|++.|+.+.||++
T Consensus       382 np~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  382 NPNEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             CCCCCeEEEEecCCceEEEeec
Confidence            99987 5788999999999974

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.3e-27  Score=234.48  Aligned_cols=253  Identities=15%  Similarity=0.199  Sum_probs=182.5

Q ss_pred             EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC-cceeecccccCCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS-GASLLSTTDCLSPKHR  274 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~h~  274 (540)
                      +..++.++.+++|+..     ..+.+|.+.|.+++|+|+++.+||+|+.||+|+|||+.++.. ...+. .......+|.
T Consensus        47 ~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~-~p~~~L~gH~  125 (568)
T PTZ00420         47 VEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK-DPQCILKGHK  125 (568)
T ss_pred             cCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-cceEEeecCC
Confidence            3456678889999643     457899999999999996578999999999999999986432 11110 0001125899


Q ss_pred             CCceeEEEecCCCe-EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          275 RWPEDIAWHPQGNS-LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       275 ~~V~~~~~~~~~~~-l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      ..|.+++|+|++.. |+++    +.|++|++||+.++.   ....+.    +...|.+++|+| +|.+|++++.|+.|+|
T Consensus       126 ~~V~sVaf~P~g~~iLaSg----S~DgtIrIWDl~tg~---~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~IrI  193 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSS----GFDSFVNIWDIENEK---RAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKHMHI  193 (568)
T ss_pred             CcEEEEEECCCCCeEEEEE----eCCCeEEEEECCCCc---EEEEEe----cCCcEEEEEECC-CCCEEEEEecCCEEEE
Confidence            99999999999875 4687    899999999999863   233332    235699999999 9999999999999999


Q ss_pred             EecCCCCCccccceeecccCCcceeE-----EEeccCCCEEEEEeCCC----eEEEEECCC-CCeeeeeccCccEEE--E
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMG-----VAGMQQKQIVLSAGADK----RIIGFDAGV-GRADFKHQIESKCMS--V  421 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~-----l~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~--~  421 (540)
                      ||++++..   ...  ..+|.+.+.+     ..|++++.+|++++.|+    .|+|||+++ +.++.....+.....  .
T Consensus       194 wD~Rsg~~---i~t--l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p  268 (568)
T PTZ00420        194 IDPRKQEI---ASS--FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP  268 (568)
T ss_pred             EECCCCcE---EEE--EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE
Confidence            99999874   222  2457665433     33568889999988774    799999995 555544443333222  2


Q ss_pred             eecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC
Q 009203          422 LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG  479 (540)
Q Consensus       422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  479 (540)
                      .++++  .+.++++|+.|+.|++|++..+.  ...+.   . -.+..++.+++|.|+.
T Consensus       269 ~~D~~--tg~l~lsGkGD~tIr~~e~~~~~--~~~l~---~-~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        269 HYDES--TGLIYLIGKGDGNCRYYQHSLGS--IRKVN---E-YKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             eeeCC--CCCEEEEEECCCeEEEEEccCCc--EEeec---c-cccCCCccceEEcccc
Confidence            33333  23688999999999999998653  22221   1 1255678889999964

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=9.1e-28  Score=227.69  Aligned_cols=311  Identities=20%  Similarity=0.256  Sum_probs=239.2

Q ss_pred             CCCeEEEeccc--------hhcccccCceEEEEEecC----------CCcEEEEEeCCceEEEEEcCCCCCcceeeccc-
Q 009203          206 SPATIHCHTSN--------HVSSLHKRKLRSLSLNPV----------NEQLFVTSALDGVIRLWQLQSRGSGASLLSTT-  266 (540)
Q Consensus       206 ~d~~i~~~~~~--------~~~~~h~~~V~~l~~spd----------~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~-  266 (540)
                      +|..+.+||..        +.+.-|...|+.+.--|-          -...+.|++.|++||+|++..+..-..+.... 
T Consensus       344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil  423 (1080)
T KOG1408|consen  344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL  423 (1080)
T ss_pred             cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence            47888899765        335678889998886551          02358999999999999998633211111000 


Q ss_pred             ----------------------------ccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEe
Q 009203          267 ----------------------------DCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTF  318 (540)
Q Consensus       267 ----------------------------~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~  318 (540)
                                                  .....+....+.+++.+|+|++||+|    ...|.++||++..-   .....
T Consensus       424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsG----Dr~GnlrVy~Lq~l---~~~~~  496 (1080)
T KOG1408|consen  424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASG----DRGGNLRVYDLQEL---EYTCF  496 (1080)
T ss_pred             hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceeccc----CccCceEEEEehhh---hhhhh
Confidence                                        00001234568999999999999999    99999999999864   33444


Q ss_pred             ecCCCCcccceeEEEEeCC--CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC--CEEEEEeC
Q 009203          319 LDDKPHVKGIINSIIFLPW--ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK--QIVLSAGA  394 (540)
Q Consensus       319 ~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~--~~l~~~~~  394 (540)
                      ++.   |...|.|+.|+-.  ...+|++++.|..|+|||+...-.    ......+|...|+++.|.-+|  ..+++++.
T Consensus       497 ~eA---HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~----l~qtld~HSssITsvKFa~~gln~~MiscGA  569 (1080)
T KOG1408|consen  497 MEA---HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD----LVQTLDGHSSSITSVKFACNGLNRKMISCGA  569 (1080)
T ss_pred             eec---ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc----hhhhhcccccceeEEEEeecCCceEEEeccC
Confidence            554   7889999999832  356899999999999999986542    222336799999999997766  67889999


Q ss_pred             CCeEEEEECCC----CCeeeee---ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc
Q 009203          395 DKRIIGFDAGV----GRADFKH---QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ  467 (540)
Q Consensus       395 dg~i~iwd~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  467 (540)
                      |..|. |+...    |.....+   ........+...|..   .++++++.|..|+|||+.+++....+.    ...+|.
T Consensus       570 Dksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~---k~v~t~cQDrnirif~i~sgKq~k~FK----gs~~~e  641 (1080)
T KOG1408|consen  570 DKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS---KLVVTVCQDRNIRIFDIESGKQVKSFK----GSRDHE  641 (1080)
T ss_pred             chhhh-eehhccccCceeccccccccccceEEEeeeCCCc---ceEEEEecccceEEEeccccceeeeec----ccccCC
Confidence            98765 44332    2222211   123566778888876   799999999999999999988654332    335678


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          468 SALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       468 ~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +....+..+|.|.|||+...|.++.+||+.+  ++++..+.+|...|+.+.|.+|-+.|++.+.||+|.||.+
T Consensus       642 G~lIKv~lDPSgiY~atScsdktl~~~Df~s--gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVS--GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             CceEEEEECCCccEEEEeecCCceEEEEecc--chhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence            8899999999999999999999999999998  8999999999999999999999999999999999999986

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.7e-27  Score=214.20  Aligned_cols=255  Identities=17%  Similarity=0.229  Sum_probs=203.2

Q ss_pred             CeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEE
Q 009203          208 ATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAW  282 (540)
Q Consensus       208 ~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  282 (540)
                      ..+.+|+..     ..+.-..+.|++++|..| |++||.|...|.|+|+|..+...+..+        .+|+.+|..+.|
T Consensus        48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~iLR~~--------~ah~apv~~~~f  118 (487)
T KOG0310|consen   48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRVILRQL--------YAHQAPVHVTKF  118 (487)
T ss_pred             cEEEEEecchhhhhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHHHHHHH--------hhccCceeEEEe
Confidence            345566443     345667789999999996 999999999999999996653333334        589999999999


Q ss_pred             ecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC
Q 009203          283 HPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED  361 (540)
Q Consensus       283 ~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  361 (540)
                      +|.++ .|++|    +.|+.+++||+.+.   .....+.+   |.+.|.|.+|+|.++.+++||+.||.|++||++....
T Consensus       119 ~~~d~t~l~s~----sDd~v~k~~d~s~a---~v~~~l~~---htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~  188 (487)
T KOG0310|consen  119 SPQDNTMLVSG----SDDKVVKYWDLSTA---YVQAELSG---HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS  188 (487)
T ss_pred             cccCCeEEEec----CCCceEEEEEcCCc---EEEEEecC---CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc
Confidence            99765 56666    89999999999976   23334554   7899999999998888999999999999999998741


Q ss_pred             ccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCC
Q 009203          362 SWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPG  439 (540)
Q Consensus       362 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d  439 (540)
                           ......|..+|..+.|-|.|..+++++.. .|++||+.+|..+..  ..+...++|+.+..++   ..|++|+-|
T Consensus       189 -----~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~---~rLlS~sLD  259 (487)
T KOG0310|consen  189 -----RVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS---TRLLSGSLD  259 (487)
T ss_pred             -----eeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCC---ceEeecccc
Confidence                 22224599999999999999999998764 899999997665443  3367788888888766   689999999


Q ss_pred             CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          440 RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       440 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      +.|++||+.+.+. .+.+.       ..++|.+++.+|++..++.|..||.+.+-+...
T Consensus       260 ~~VKVfd~t~~Kv-v~s~~-------~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  260 RHVKVFDTTNYKV-VHSWK-------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             cceEEEEccceEE-EEeee-------cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence            9999999776553 33332       356899999999999999999999888775443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.4e-27  Score=203.55  Aligned_cols=260  Identities=15%  Similarity=0.164  Sum_probs=208.7

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC--eEEEEeecC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN--SLFSAHTAD  296 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~~~~~  296 (540)
                      +..|.++|++|+.+   +.++|+|+.|-+|+|||+........+        -.|.+.|+++.|.+.-.  .|++|    
T Consensus        39 ~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~l--------l~HagsitaL~F~~~~S~shLlS~----  103 (362)
T KOG0294|consen   39 FSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGIL--------LSHAGSITALKFYPPLSKSHLLSG----  103 (362)
T ss_pred             ccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcce--------eccccceEEEEecCCcchhheeee----
Confidence            57999999999996   789999999999999999988777766        36889999999998765  89999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.||.|.+|+....   .++..+..   |.+.|+.++.+| .+.+.++.+.|+.+++|++-+|+..+...    ..+  .
T Consensus       104 sdDG~i~iw~~~~W---~~~~slK~---H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~----L~~--~  170 (362)
T KOG0294|consen  104 SDDGHIIIWRVGSW---ELLKSLKA---HKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLN----LKN--K  170 (362)
T ss_pred             cCCCcEEEEEcCCe---EEeeeecc---cccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeec----cCC--c
Confidence            99999999999874   66777775   677799999999 99999999999999999999887422111    112  2


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      .+.+.|+|.|.+++.+..+ .|-+|.+.+............+.++.|...+    .|++|..|+.|.+||..+..+..  
T Consensus       171 at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~----~L~vG~d~~~i~~~D~ds~~~~~--  243 (362)
T KOG0294|consen  171 ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGS----ELLVGGDNEWISLKDTDSDTPLT--  243 (362)
T ss_pred             ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCc----eEEEecCCceEEEeccCCCccce--
Confidence            3449999999998888876 6899999887776666666677787777654    89999999999999999754332  


Q ss_pred             eccccccCccccCeEEEEE--cCCCCEEEEEeCCCcEEEEeccCCCCc---ccccccccccceeEEEE
Q 009203          457 FGWKQESSESQSALINQSW--SPDGLYITSGSADPVIHLFDIRYSANK---PSQSIRAHQKRVFKAVW  519 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~--sp~g~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~h~~~i~~l~~  519 (540)
                           .+.+|...|-++.+  .|++.+|+++++||.|+|||++....+   ++..+.. ...++|+..
T Consensus       244 -----~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  244 -----EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             -----eeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence                 55789999999884  567899999999999999999973222   2333222 445666654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.9e-28  Score=210.66  Aligned_cols=263  Identities=13%  Similarity=0.172  Sum_probs=224.8

Q ss_pred             eEEecCCCCeEEEeccc-------------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccc
Q 009203          200 LVRTSASPATIHCHTSN-------------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTT  266 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-------------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~  266 (540)
                      .+++++.|+-|.+|+..             .-+--|.+.|.|++|+.| ..+||+|+.||.|+||.+.++.+++.+.   
T Consensus       227 yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkIKvWri~tG~ClRrFd---  302 (508)
T KOG0275|consen  227 YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKIKVWRIETGQCLRRFD---  302 (508)
T ss_pred             eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCCcEEEEEEecchHHHHhh---
Confidence            57888999999999653             225678899999999996 8999999999999999999999998885   


Q ss_pred             ccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe
Q 009203          267 DCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG  346 (540)
Q Consensus       267 ~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  346 (540)
                          ..|...|+|+.|+.|+..++++    +.|.++++.-+.+|   +++..+.+   |.+.|+...|.+ +|..+++++
T Consensus       303 ----rAHtkGvt~l~FSrD~SqiLS~----sfD~tvRiHGlKSG---K~LKEfrG---HsSyvn~a~ft~-dG~~iisaS  367 (508)
T KOG0275|consen  303 ----RAHTKGVTCLSFSRDNSQILSA----SFDQTVRIHGLKSG---KCLKEFRG---HSSYVNEATFTD-DGHHIISAS  367 (508)
T ss_pred             ----hhhccCeeEEEEccCcchhhcc----cccceEEEeccccc---hhHHHhcC---ccccccceEEcC-CCCeEEEec
Confidence                4799999999999999999999    99999999999987   56777775   788999999999 999999999


Q ss_pred             cCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeec----cCccEEEE
Q 009203          347 SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQ----IESKCMSV  421 (540)
Q Consensus       347 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~  421 (540)
                      .||+|++|+..+.+|...++   ..+...+|+++..-| +...+++|....+|++.++. |+.+..+.    .++...+.
T Consensus       368 sDgtvkvW~~KtteC~~Tfk---~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~  443 (508)
T KOG0275|consen  368 SDGTVKVWHGKTTECLSTFK---PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA  443 (508)
T ss_pred             CCccEEEecCcchhhhhhcc---CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence            99999999999999844443   344566788888776 45678889999999999987 66655433    34667788


Q ss_pred             eecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          422 LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      ..+|.+   .++.+.+.|+.++.|.+.++....       .+.-|...|..++-+|..+.||+-++||.+++|.
T Consensus       444 ~lSpkG---ewiYcigED~vlYCF~~~sG~LE~-------tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  444 ILSPKG---EWIYCIGEDGVLYCFSVLSGKLER-------TLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EecCCC---cEEEEEccCcEEEEEEeecCceee-------eeecccccccccccCcccchhhhhcccchhhhcC
Confidence            888887   689999999999999999887543       4466888999999999999999999999999995

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3e-28  Score=228.92  Aligned_cols=296  Identities=21%  Similarity=0.284  Sum_probs=229.4

Q ss_pred             cccCceE---EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          221 LHKRKLR---SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       221 ~h~~~V~---~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .|...|.   .+..++.++++|+|||.||.|++|++........-.  .......|.++|+.++...+|+.|+++    +
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--~~asme~HsDWVNDiiL~~~~~tlIS~----S   92 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--YIASMEHHSDWVNDIILCGNGKTLISA----S   92 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc--hhhhhhhhHhHHhhHHhhcCCCceEEe----c
Confidence            4555666   666666578899999999999999987654321111  111125799999999999999999999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE-eCCCCCEEEEEecCCcEEEEecCCCCC--cccccee---ec-
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF-LPWENPCFATGGSDHAVVLWSERDAED--SWKPKAL---HR-  370 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~---~~-  370 (540)
                      .|-+|++|+...+. ..|..++..   |.+.|.|++. .+ +..++|+||.|+.|.+||+.++..  +.....+   .. 
T Consensus        93 sDtTVK~W~~~~~~-~~c~stir~---H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~  167 (735)
T KOG0308|consen   93 SDTTVKVWNAHKDN-TFCMSTIRT---HKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG  167 (735)
T ss_pred             CCceEEEeecccCc-chhHhhhhc---ccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence            99999999998653 356666664   7899999999 56 889999999999999999998732  1111111   11 


Q ss_pred             ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203          371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL  449 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  449 (540)
                      .++...|++++.++.|..|++|+..+.+++||.++++.+... .+...+..+..++++   ..+++++.||+|++||+..
T Consensus       168 sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG---t~~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  168 SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG---TRLLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             CCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC---CeEeecCCCceEEeeeccc
Confidence            268889999999999999999999999999999998876654 455778888888888   7899999999999999998


Q ss_pred             CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE
Q 009203          450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI  529 (540)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~  529 (540)
                      ..+..       ++..|...|+++..+|+-.++++|+.||.|+.=|+.+. .+....++ ...+|..+..+...+-+-++
T Consensus       245 QrCl~-------T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~-~~~tlick-~daPv~~l~~~~~~~~~Wvt  315 (735)
T KOG0308|consen  245 QRCLA-------TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP-AKSTLICK-EDAPVLKLHLHEHDNSVWVT  315 (735)
T ss_pred             cceee-------eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc-hhheEeec-CCCchhhhhhccccCCceee
Confidence            77655       34568888999999999999999999999999999974 22222222 34467777766444444566


Q ss_pred             EcCCcEEEEe
Q 009203          530 SSDLNIGLHK  539 (540)
Q Consensus       530 ~~dg~v~iw~  539 (540)
                      ..|+.|+-|.
T Consensus       316 Ttds~I~rW~  325 (735)
T KOG0308|consen  316 TTDSSIKRWK  325 (735)
T ss_pred             eccccceecC
Confidence            6788888875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=1e-25  Score=205.88  Aligned_cols=355  Identities=15%  Similarity=0.235  Sum_probs=255.1

Q ss_pred             cCCcceeeEEEEcccccccCCCCccEE---------EEeecCCC-ceEEecccccccceEEecC-------------CCC
Q 009203          152 SPAAHSIGIVKVKGEKSHRNSSDSEIV---------EVRDRGTK-RKFEQKEHRELIPLVRTSA-------------SPA  208 (540)
Q Consensus       152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~v~~~~~~~-------------~d~  208 (540)
                      -+|...|.|+.++|.+...+.+...-.         ..|..-.- ....+...+.-|.+++|+.             ++.
T Consensus       101 ~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h  180 (626)
T KOG2106|consen  101 LGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPH  180 (626)
T ss_pred             cCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCcc
Confidence            489999999999998776663322211         11110000 0111223344555666554             455


Q ss_pred             eEEEeccch-----hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe
Q 009203          209 TIHCHTSNH-----VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH  283 (540)
Q Consensus       209 ~i~~~~~~~-----~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~  283 (540)
                      .+.+|+...     -.+.-+..|....|+|.+.+++++++ .|.+.+|+...+....+... ++   ......|.|++|.
T Consensus       181 ~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~-fe---k~ekk~Vl~v~F~  255 (626)
T KOG2106|consen  181 MLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGI-FE---KREKKFVLCVTFL  255 (626)
T ss_pred             ccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeec-cc---cccceEEEEEEEc
Confidence            667776541     12344567889999997666777765 68999999988765433321 11   1223679999999


Q ss_pred             cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC--
Q 009203          284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED--  361 (540)
Q Consensus       284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--  361 (540)
                      ++|+. ++|    ..+|.|.||+..+.   ...+...   .|.+.|.+++... +|.+| +|+.|..|..||-.-.+.  
T Consensus       256 engdv-iTg----DS~G~i~Iw~~~~~---~~~k~~~---aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~  322 (626)
T KOG2106|consen  256 ENGDV-ITG----DSGGNILIWSKGTN---RISKQVH---AHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRE  322 (626)
T ss_pred             CCCCE-Eee----cCCceEEEEeCCCc---eEEeEee---ecCCceEEEEEec-CccEe-ecCccceEEecccccccccc
Confidence            99874 566    89999999999764   2222222   3678899999997 77655 599999999998321110  


Q ss_pred             ---------------------------------ccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe
Q 009203          362 ---------------------------------SWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA  408 (540)
Q Consensus       362 ---------------------------------~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~  408 (540)
                                                       +..-..+...+|......++.+|+.+.+++++.|+.+++|+  ..+.
T Consensus       323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~  400 (626)
T KOG2106|consen  323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL  400 (626)
T ss_pred             ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence                                             00001122256888889999999999999999999999999  5777


Q ss_pred             eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC
Q 009203          409 DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD  488 (540)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d  488 (540)
                      +........+.++.|+|.+    .++.|+..|...+.|..+......       ... ..+++++.|+|+|.+||.|+.|
T Consensus       401 ~wt~~~~d~~~~~~fhpsg----~va~Gt~~G~w~V~d~e~~~lv~~-------~~d-~~~ls~v~ysp~G~~lAvgs~d  468 (626)
T KOG2106|consen  401 EWTKIIEDPAECADFHPSG----VVAVGTATGRWFVLDTETQDLVTI-------HTD-NEQLSVVRYSPDGAFLAVGSHD  468 (626)
T ss_pred             eEEEEecCceeEeeccCcc----eEEEeeccceEEEEecccceeEEE-------Eec-CCceEEEEEcCCCCEEEEecCC
Confidence            7888888899999999987    899999999999999998543221       122 6789999999999999999999


Q ss_pred             CcEEEEeccCCCCcccccc-cccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          489 PVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       489 g~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      +.|+||.+... +..+... +.|..+|+.+.|++|+++|++-+.|-.|..|+
T Consensus       469 ~~iyiy~Vs~~-g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  469 NHIYIYRVSAN-GRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             CeEEEEEECCC-CcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            99999999875 4433333 33457999999999999999999999999994

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=6.8e-26  Score=219.00  Aligned_cols=372  Identities=15%  Similarity=0.150  Sum_probs=273.4

Q ss_pred             CCCCCeeeecCCcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccc----------eEEecCCCCeE
Q 009203          143 DPSGSSTQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIP----------LVRTSASPATI  210 (540)
Q Consensus       143 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~----------~~~~~~~d~~i  210 (540)
                      +....+.+.+++...|+++.-.|.--..+  -.++.+......-....+..+...+.|.          .++++...+.+
T Consensus       190 rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m  269 (910)
T KOG1539|consen  190 RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM  269 (910)
T ss_pred             ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence            44455566667777777766665533333  3344444222222222222222223333          35555667889


Q ss_pred             EEeccc------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe-
Q 009203          211 HCHTSN------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH-  283 (540)
Q Consensus       211 ~~~~~~------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~-  283 (540)
                      -+||.+      .+...|.+.|+...|.| +...|++++.|+.+++|-.+++.....+....    .||..+..+++|. 
T Consensus       270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R----~GHs~Pp~~irfy~  344 (910)
T KOG1539|consen  270 AFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR----GGHSAPPSCIRFYG  344 (910)
T ss_pred             EEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeec----cCCCCCchheeeec
Confidence            999876      34568999999999999 68899999999999999887666544444433    5999999999998 


Q ss_pred             cCCCeEEEEeecCCCCCeEEEEecCCCCCce-------------------------eEE---------------------
Q 009203          284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRA-------------------------CVT---------------------  317 (540)
Q Consensus       284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~-------------------------~~~---------------------  317 (540)
                      ..|.++.++    +.|++++.+++......+                         .+.                     
T Consensus       345 ~~g~~ilsa----~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~  420 (910)
T KOG1539|consen  345 SQGHFILSA----KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKG  420 (910)
T ss_pred             cCcEEEEec----ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecC
Confidence            678889998    888877777654210000                         000                     


Q ss_pred             -----------------eecCC--CCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          318 -----------------FLDDK--PHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       318 -----------------~~~~~--~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                                       .+...  ......+++++.++ .|++.+.|+..|.|-+|++.+|-.....-  ....|.++|+
T Consensus       421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~--~~~ah~~~V~  497 (910)
T KOG1539|consen  421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFG--DSPAHKGEVT  497 (910)
T ss_pred             cceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccc--cCccccCcee
Confidence                             00000  01235688899999 99999999999999999999986422111  1246999999


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG  458 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  458 (540)
                      +++...-++.+++++.+|.+.+||..+...+.....+..+..+..+...   .+++.+..|-.|.++|..+.....    
T Consensus       498 gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s---~l~a~~~ddf~I~vvD~~t~kvvR----  570 (910)
T KOG1539|consen  498 GLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS---DLLAIALDDFSIRVVDVVTRKVVR----  570 (910)
T ss_pred             EEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh---hhhhhhcCceeEEEEEchhhhhhH----
Confidence            9999888899999999999999999988877777777777888777665   478889999999999998776433    


Q ss_pred             cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC-CcEEE
Q 009203          459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD-LNIGL  537 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-g~v~i  537 (540)
                         .+.+|.+.|++++|||||++|++++.|++|++||+.+  +.++-.+. -..+.+++.|+|+|.+||++..| .-|++
T Consensus       571 ---~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt--~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIyl  644 (910)
T KOG1539|consen  571 ---EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT--GTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYL  644 (910)
T ss_pred             ---HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC--cceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEE
Confidence               6678999999999999999999999999999999998  66665554 35678999999999999999988 66999


Q ss_pred             Ee
Q 009203          538 HK  539 (540)
Q Consensus       538 w~  539 (540)
                      |-
T Consensus       645 Ws  646 (910)
T KOG1539|consen  645 WS  646 (910)
T ss_pred             EE
Confidence            93

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.6e-27  Score=210.80  Aligned_cols=291  Identities=12%  Similarity=0.133  Sum_probs=223.0

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCCCe
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGDSQ  301 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~  301 (540)
                      .++|++|.|+| ...+|++++.||+++||.++.....  +.....    -...+|.+++|.|+|. .++++    +....
T Consensus       213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~--~lqS~~----l~~fPi~~a~f~p~G~~~i~~s----~rrky  281 (514)
T KOG2055|consen  213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIH----LEKFPIQKAEFAPNGHSVIFTS----GRRKY  281 (514)
T ss_pred             cCCceEEEecC-CCceEEEecCCCcEEEEEecCccCh--hheeee----eccCccceeeecCCCceEEEec----ccceE
Confidence            47899999999 5999999999999999999754432  222111    2246789999999999 88888    89999


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      ++.||+.+.+. ..+..+.+..  ...+.....+| ++++|+..+..|.|.+....+++.+..++      -.+.|.+++
T Consensus       282 ~ysyDle~ak~-~k~~~~~g~e--~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K------ieG~v~~~~  351 (514)
T KOG2055|consen  282 LYSYDLETAKV-TKLKPPYGVE--EKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK------IEGVVSDFT  351 (514)
T ss_pred             EEEeecccccc-ccccCCCCcc--cchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee------eccEEeeEE
Confidence            99999997643 2222233322  33477888899 99999999999999999999988632222      557899999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCcc--EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESK--CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      |+.+++.|++++.+|.|.+||++...++..+..++.  ..+++.++.+   .+||+|+..|.|.|||.++........ .
T Consensus       352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng---~ylA~GS~~GiVNIYd~~s~~~s~~Pk-P  427 (514)
T KOG2055|consen  352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG---SYLATGSDSGIVNIYDGNSCFASTNPK-P  427 (514)
T ss_pred             EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC---ceEEeccCcceEEEeccchhhccCCCC-c
Confidence            999999999999999999999999988777655544  4456666655   699999999999999976532111100 0


Q ss_pred             ccccCccccCeEEEEEcCCCCEEEEEeC--CCcEEEEeccCCCCcccccccc---cccceeEEEEcCCCCEEEEEEcCCc
Q 009203          460 KQESSESQSALINQSWSPDGLYITSGSA--DPVIHLFDIRYSANKPSQSIRA---HQKRVFKAVWHYSHPLLISISSDLN  534 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~---h~~~i~~l~~s~~~~~l~s~~~dg~  534 (540)
                      ...+..-...|+++.|++|+.+||.++.  +..+++-.+.+  ......|..   .-+.|+||+|+|.|.+|+.|..+|.
T Consensus       428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS--~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr  505 (514)
T KOG2055|consen  428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS--CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR  505 (514)
T ss_pred             hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc--eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence            1133445668999999999999988764  67899888876  444444443   3346899999999999999999999


Q ss_pred             EEEEeC
Q 009203          535 IGLHKI  540 (540)
Q Consensus       535 v~iw~l  540 (540)
                      |.+|+|
T Consensus       506 v~l~kL  511 (514)
T KOG2055|consen  506 VHLFKL  511 (514)
T ss_pred             eeeEee
Confidence            999986

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=2.2e-26  Score=222.32  Aligned_cols=343  Identities=14%  Similarity=0.150  Sum_probs=264.9

Q ss_pred             CCCccEEEEeecCCCceEEecccccccce---------EEecCCCCeEEEeccc--hh---cccccCceEEEEEecCCCc
Q 009203          172 SSDSEIVEVRDRGTKRKFEQKEHRELIPL---------VRTSASPATIHCHTSN--HV---SSLHKRKLRSLSLNPVNEQ  237 (540)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~~~~~~d~~i~~~~~~--~~---~~~h~~~V~~l~~spd~~~  237 (540)
                      +..+.+..+.....+..+...++...|++         ++.|-.+++|.+++..  .+   ++.-.+.|+.++|.-|+..
T Consensus       179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p  258 (910)
T KOG1539|consen  179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP  258 (910)
T ss_pred             ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe
Confidence            34445554444555566666777776655         4556679999999765  22   3433599999999998888


Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT  317 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~  317 (540)
                      ++|+|+..|.+-+||++..+......       ..|.+.|....|.|....++++    +.|..+++|-.+++.+.  .+
T Consensus       259 ~las~~~~G~m~~wDLe~kkl~~v~~-------nah~~sv~~~~fl~~epVl~ta----~~DnSlk~~vfD~~dg~--pR  325 (910)
T KOG1539|consen  259 LLASGRSNGDMAFWDLEKKKLINVTR-------NAHYGSVTGATFLPGEPVLVTA----GADNSLKVWVFDSGDGV--PR  325 (910)
T ss_pred             eEEeccCCceEEEEEcCCCeeeeeee-------ccccCCcccceecCCCceEeec----cCCCceeEEEeeCCCCc--ch
Confidence            99999999999999999876555443       3688889999999999999999    99999999977766442  33


Q ss_pred             eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC------------------------------------
Q 009203          318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED------------------------------------  361 (540)
Q Consensus       318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~------------------------------------  361 (540)
                      .+....+|..+..|+.|.-..+..+.+++.|++.+.+++.....                                    
T Consensus       326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~  405 (910)
T KOG1539|consen  326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN  405 (910)
T ss_pred             heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence            34444468899999999865888888888888777665422100                                    


Q ss_pred             --------------------ccccce-------ee---cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009203          362 --------------------SWKPKA-------LH---RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK  411 (540)
Q Consensus       362 --------------------~~~~~~-------~~---~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  411 (540)
                                          .|..+.       +.   ...-...+++++.++.|++.+.|+..|.|-+|++.+|.....
T Consensus       406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s  485 (910)
T KOG1539|consen  406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS  485 (910)
T ss_pred             chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence                                000000       00   001225688999999999999999999999999999877655


Q ss_pred             e----ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC
Q 009203          412 H----QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA  487 (540)
Q Consensus       412 ~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~  487 (540)
                      +    .+...+..++.+.-+   +.+++++.+|.+++||...... ...+       .-...++++.++.....++.+..
T Consensus       486 f~~~~ah~~~V~gla~D~~n---~~~vsa~~~Gilkfw~f~~k~l-~~~l-------~l~~~~~~iv~hr~s~l~a~~~d  554 (910)
T KOG1539|consen  486 FGDSPAHKGEVTGLAVDGTN---RLLVSAGADGILKFWDFKKKVL-KKSL-------RLGSSITGIVYHRVSDLLAIALD  554 (910)
T ss_pred             cccCccccCceeEEEecCCC---ceEEEccCcceEEEEecCCcce-eeee-------ccCCCcceeeeeehhhhhhhhcC
Confidence            5    566788888888766   7899999999999999987662 2221       12346888889888889999999


Q ss_pred             CCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          488 DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       488 dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |-.|+++|+.+  .+.++.+.+|.+.|++++|||||++|++++.|++|++||+
T Consensus       555 df~I~vvD~~t--~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  555 DFSIRVVDVVT--RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             ceeEEEEEchh--hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            99999999998  8899999999999999999999999999999999999996

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.5e-26  Score=198.20  Aligned_cols=237  Identities=22%  Similarity=0.288  Sum_probs=194.6

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC--EEEEEecC
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP--CFATGGSD  348 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~s~~~d  348 (540)
                      ..|...|++++.+  +.++|+|    +.|-+|+|||+....   .+..+-   .|.+.|+++.|.+ ...  .|++|+.|
T Consensus        40 ~aH~~sitavAVs--~~~~aSG----ssDetI~IYDm~k~~---qlg~ll---~HagsitaL~F~~-~~S~shLlS~sdD  106 (362)
T KOG0294|consen   40 SAHAGSITALAVS--GPYVASG----SSDETIHIYDMRKRK---QLGILL---SHAGSITALKFYP-PLSKSHLLSGSDD  106 (362)
T ss_pred             cccccceeEEEec--ceeEecc----CCCCcEEEEeccchh---hhccee---ccccceEEEEecC-CcchhheeeecCC
Confidence            6899999999985  7899999    999999999999752   233333   3688999999987 544  89999999


Q ss_pred             CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCC
Q 009203          349 HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDF  428 (540)
Q Consensus       349 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (540)
                      |.|.+|+...-.+   ...+  .+|.+.|+.++.+|.|++-++.+.|+.+++||+-+|+.-+..........+.|+|.+ 
T Consensus       107 G~i~iw~~~~W~~---~~sl--K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~G-  180 (362)
T KOG0294|consen  107 GHIIIWRVGSWEL---LKSL--KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQG-  180 (362)
T ss_pred             CcEEEEEcCCeEE---eeee--cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCC-
Confidence            9999999987654   2333  569999999999999999999999999999999999988877777777779999887 


Q ss_pred             CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203          429 NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR  508 (540)
Q Consensus       429 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  508 (540)
                        .+++.+.. ..|-+|.+.+.......        .....+.++.|. ++.+|++|+.|+.|.+||.++  ..++..+.
T Consensus       181 --d~F~v~~~-~~i~i~q~d~A~v~~~i--------~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds--~~~~~~~~  246 (362)
T KOG0294|consen  181 --DHFVVSGR-NKIDIYQLDNASVFREI--------ENPKRILCATFL-DGSELLVGGDNEWISLKDTDS--DTPLTEFL  246 (362)
T ss_pred             --CEEEEEec-cEEEEEecccHhHhhhh--------hccccceeeeec-CCceEEEecCCceEEEeccCC--Cccceeee
Confidence              45555544 47889998865532221        112346777776 678999999999999999998  78999999


Q ss_pred             ccccceeEEEE--cCCCCEEEEEEcCCcEEEEeC
Q 009203          509 AHQKRVFKAVW--HYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       509 ~h~~~i~~l~~--s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +|..+|-++.+  .|++.+|+|+|.||.|+|||+
T Consensus       247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~  280 (362)
T KOG0294|consen  247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI  280 (362)
T ss_pred             cchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence            99999999985  467889999999999999996

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.4e-27  Score=196.37  Aligned_cols=254  Identities=16%  Similarity=0.205  Sum_probs=201.6

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe-CCCCCEEEEEecCC
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL-PWENPCFATGGSDH  349 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg  349 (540)
                      ..|.+.|.++...--|+.|+++    +.|++|+|+.+........+..+.+   |.++|+.++|. |.-|.+|++++.||
T Consensus         8 t~H~D~IHda~lDyygkrlATc----sSD~tVkIf~v~~n~~s~ll~~L~G---h~GPVwqv~wahPk~G~iLAScsYDg   80 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATC----SSDGTVKIFEVRNNGQSKLLAELTG---HSGPVWKVAWAHPKFGTILASCSYDG   80 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeee----cCCccEEEEEEcCCCCceeeeEecC---CCCCeeEEeecccccCcEeeEeecCc
Confidence            5788889998888889999999    9999999999997755466666775   88999999995 65799999999999


Q ss_pred             cEEEEecCCCCCccccceeecccCCcceeEEEeccC--CCEEEEEeCCCeEEEEECCCC-Ce---eeeeccCccEEEEee
Q 009203          350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ--KQIVLSAGADKRIIGFDAGVG-RA---DFKHQIESKCMSVLP  423 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~-~~---~~~~~~~~~~~~~~~  423 (540)
                      .|.||.-.+++-   .+......|...|++++|-|.  |-.|++++.||.|.+.+.+.. .-   .....+...+.+++|
T Consensus        81 kVIiWke~~g~w---~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw  157 (299)
T KOG1332|consen   81 KVIIWKEENGRW---TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW  157 (299)
T ss_pred             eEEEEecCCCch---hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence            999999998853   233344669999999999885  568899999999999998764 11   112344566777888


Q ss_pred             cCCCCCc-----------eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC----CEEEEEeCC
Q 009203          424 NPCDFNL-----------FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG----LYITSGSAD  488 (540)
Q Consensus       424 ~~~~~~~-----------~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g----~~l~sg~~d  488 (540)
                      .|....+           +.|++|+.|+.|+||+.....-.     ....+.+|...|..++|.|.-    .+||+++.|
T Consensus       158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-----~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD  232 (299)
T KOG1332|consen  158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-----LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD  232 (299)
T ss_pred             cCcCCCccccccCcccccceeeccCCccceeeeecCCcchh-----hhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence            7763222           57999999999999999876321     123578999999999999963    579999999


Q ss_pred             CcEEEEeccCCCCc-ccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          489 PVIHLFDIRYSANK-PSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       489 g~i~iwd~~~~~~~-~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      |++.||..+..... ....+......++.+.||..|++|+.++.|+.|.+|+
T Consensus       233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             CcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            99999988742111 1122233456799999999999999999999999996

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=6.5e-27  Score=221.67  Aligned_cols=279  Identities=15%  Similarity=0.183  Sum_probs=223.1

Q ss_pred             ccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEec-CCCeEEE
Q 009203          214 TSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHP-QGNSLFS  291 (540)
Q Consensus       214 ~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~-~~~~l~s  291 (540)
                      ...+.+.||...|..+++.+  +-.++++|.||++++|+-...+...+...      .+|.+.|.. ++|-+ ++-.|++
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~------~~~~g~i~~~i~y~e~~~~~l~~   76 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAF------EGPKGFIANSICYAESDKGRLVV   76 (745)
T ss_pred             eeEEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceec------ccCcceeeccceeccccCcceEe
Confidence            34467899999999999986  45899999999999999876654432211      467777776 88875 4446888


Q ss_pred             EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc
Q 009203          292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN  371 (540)
Q Consensus       292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  371 (540)
                      |    +.|.+|.+|.....   ..+.++.+   |+..|.|++... ++. +++|+.|.++++|....-..       ...
T Consensus        77 g----~~D~~i~v~~~~~~---~P~~~Lkg---H~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l~~-------~l~  137 (745)
T KOG0301|consen   77 G----GMDTTIIVFKLSQA---EPLYTLKG---HKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGELVY-------SLQ  137 (745)
T ss_pred             e----cccceEEEEecCCC---Cchhhhhc---cccceeeeecCC-cCc-eEecccccceEEecchhhhc-------ccC
Confidence            8    99999999999876   45777776   778899999776 555 99999999999998875432       246


Q ss_pred             cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      +|...|.++++-|++ .+++|+.|.+|++|.-  ++.+..+. +...+..++.-++.    .+++++.||.|++|++ ++
T Consensus       138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~----~flScsNDg~Ir~w~~-~g  209 (745)
T KOG0301|consen  138 GHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS----HFLSCSNDGSIRLWDL-DG  209 (745)
T ss_pred             CcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC----CeEeecCCceEEEEec-cC
Confidence            799999999999877 8899999999999987  44444433 45666788888874    6899999999999999 45


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ++..       +..+|++.|.+++..+++..++++++|++++||+..    .+.+.+.-..-.|+++.+-++|. +++||
T Consensus       210 e~l~-------~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~----e~~q~I~lPttsiWsa~~L~NgD-Ivvg~  277 (745)
T KOG0301|consen  210 EVLL-------EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD----ECVQVITLPTTSIWSAKVLLNGD-IVVGG  277 (745)
T ss_pred             ceee-------eeeccceEEEEEEecCCCCeEEEecCCceEEEeecC----ceEEEEecCccceEEEEEeeCCC-EEEec
Confidence            5544       345799999999988889999999999999999987    45556654455899999988887 77788


Q ss_pred             cCCcEEEEe
Q 009203          531 SDLNIGLHK  539 (540)
Q Consensus       531 ~dg~v~iw~  539 (540)
                      .||.||||-
T Consensus       278 SDG~VrVfT  286 (745)
T KOG0301|consen  278 SDGRVRVFT  286 (745)
T ss_pred             cCceEEEEE
Confidence            899999995

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.8e-26  Score=186.79  Aligned_cols=252  Identities=21%  Similarity=0.293  Sum_probs=196.3

Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC------CCC---ceeEEeecCCCCcccceeEEEEeCCCCCEEEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK------TKG---RACVTFLDDKPHVKGIINSIIFLPWENPCFAT  344 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~------~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  344 (540)
                      ...|.+++|+|.|.+.++|    +...+++|.....      +..   ......+....||++.|.|.+|+| +|.+|++
T Consensus        32 sqairav~fhp~g~lyavg----snskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliat  106 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVG----SNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIAT  106 (350)
T ss_pred             hhheeeEEecCCCceEEec----cCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEe
Confidence            4568999999999999999    8999988875432      100   111223334457899999999999 9999999


Q ss_pred             EecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc----CCCEEEEEeC-CCeEEEEECCCCCeeeee-ccCccE
Q 009203          345 GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ----QKQIVLSAGA-DKRIIGFDAGVGRADFKH-QIESKC  418 (540)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~-~~~~~~  418 (540)
                      |+.|.+|++..++...+...-..+....|.+.|..++|..    .|..|++++. |..|++-|...|+..... .+.+.+
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi  186 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI  186 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence            9999999998877665533334455567999999999954    3556666554 667888888888876654 345666


Q ss_pred             EEEe-ecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc---cccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009203          419 MSVL-PNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE---SQSALINQSWSPDGLYITSGSADPVIHLF  494 (540)
Q Consensus       419 ~~~~-~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~sg~~dg~i~iw  494 (540)
                      .++. |+.     .++++|+.|.+|++||++-..+... ++  ..+.+   ..+.|.+++..|.|++|++|-.|....+|
T Consensus       187 lalyswn~-----~m~~sgsqdktirfwdlrv~~~v~~-l~--~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  187 LALYSWNG-----AMFASGSQDKTIRFWDLRVNSCVNT-LD--NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             EEEEEecC-----cEEEccCCCceEEEEeeeccceeee-cc--CcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            6653 544     5999999999999999997664332 21  12222   13579999999999999999999999999


Q ss_pred             eccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          495 DIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       495 d~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |++.  ++++..+..|...|.++.|+|...|+.+|++|..|++=|+
T Consensus       259 dirg--~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  259 DIRG--GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             EeeC--CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence            9997  8899999999999999999999999999999999998775

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.1e-26  Score=196.52  Aligned_cols=243  Identities=16%  Similarity=0.183  Sum_probs=194.3

Q ss_pred             CCCCCceeEEEecCC-CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203          272 KHRRWPEDIAWHPQG-NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA  350 (540)
Q Consensus       272 ~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  350 (540)
                      .-.+.|.+++|||.. .+++++    +.|++|++|++....  ..+.  .....|.++|.+++|+. +|..+++|+.|+.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~----SWD~tVR~wevq~~g--~~~~--ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~   95 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAG----SWDGTVRIWEVQNSG--QLVP--KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQ   95 (347)
T ss_pred             CcccchheeEeccccCceEEec----ccCCceEEEEEecCC--cccc--hhhhccCCCeEEEEEcc-CCceEEeeccCCc
Confidence            345779999999944 455566    999999999998631  1111  22224678999999999 9999999999999


Q ss_pred             EEEEecCCCCCccccceeecccCCcceeEEEeccCCC--EEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCC
Q 009203          351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ--IVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDF  428 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (540)
                      +++||+.+++.    ..+  ..|.++|.++.|-+...  .|++|+.|.+|+.||++...++........+.++..-.   
T Consensus        96 ~k~wDL~S~Q~----~~v--~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~---  166 (347)
T KOG0647|consen   96 AKLWDLASGQV----SQV--AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY---  166 (347)
T ss_pred             eEEEEccCCCe----eee--eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC---
Confidence            99999999873    444  44999999999977555  89999999999999999999999999888888776543   


Q ss_pred             CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203          429 NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR  508 (540)
Q Consensus       429 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  508 (540)
                        .+++++..+..|.+|+++.........     ...-...+.||+..+|..-.+.|+-.|.+.|..++.+..+.-.+|+
T Consensus       167 --pm~vVata~r~i~vynL~n~~te~k~~-----~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk  239 (347)
T KOG0647|consen  167 --PMAVVATAERHIAVYNLENPPTEFKRI-----ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK  239 (347)
T ss_pred             --ceeEEEecCCcEEEEEcCCCcchhhhh-----cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence              378888999999999998765433321     1223446889999888888899999999999999974334555666


Q ss_pred             cccc---------ceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          509 AHQK---------RVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       509 ~h~~---------~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .|..         .|++|+|+|.-..|+|+|.||++.+||
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence            6752         578999999989999999999999998

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.4e-25  Score=192.88  Aligned_cols=242  Identities=15%  Similarity=0.176  Sum_probs=193.4

Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec--CCcE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS--DHAV  351 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i  351 (540)
                      ...|+++.|+++|.+++++    +.|.+|++||..++   ..+..+..   ++-.+..++|.. ..+.++.++.  |.+|
T Consensus        14 ~~~i~sl~fs~~G~~lits----s~dDsl~LYd~~~g---~~~~ti~s---kkyG~~~~~Fth-~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITS----SEDDSLRLYDSLSG---KQVKTINS---KKYGVDLACFTH-HSNTVIHSSTKEDDTI   82 (311)
T ss_pred             CCceeEEEecCCCCEEEEe----cCCCeEEEEEcCCC---ceeeEeec---ccccccEEEEec-CCceEEEccCCCCCce
Confidence            4669999999999999999    99999999999987   44555543   233488888887 5566666665  8899


Q ss_pred             EEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce
Q 009203          352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (540)
                      +..++.+.+.   ++  ...||...|++++.+|-+..+++++.|++|++||++..++.-....... ...+++|.+   .
T Consensus        83 ryLsl~dNky---lR--YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~G---L  153 (311)
T KOG1446|consen   83 RYLSLHDNKY---LR--YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEG---L  153 (311)
T ss_pred             EEEEeecCce---EE--EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCC---c
Confidence            9999999875   33  3378999999999999999999999999999999997766443333322 345788887   7


Q ss_pred             EEEEEcCCCeEEEEECCCCc-ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          432 MVQTGTPGRQLRLYDIRLRQ-TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      ++|++...+.|++||++... .+...+...   .+.....+.+.|||||++|+.+...+.+++.|.-.  +....++.++
T Consensus       154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~---~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~--G~~~~tfs~~  228 (311)
T KOG1446|consen  154 IFALANGSELIKLYDLRSFDKGPFTTFSIT---DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD--GTVKSTFSGY  228 (311)
T ss_pred             EEEEecCCCeEEEEEecccCCCCceeEccC---CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC--CcEeeeEeec
Confidence            88888888899999999763 344444322   13456789999999999999999999999999988  6777777766


Q ss_pred             ccce---eEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          511 QKRV---FKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       511 ~~~i---~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ...-   ....|+||++++++|+.||+|.+|++
T Consensus       229 ~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  229 PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             cCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence            5432   57889999999999999999999985

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=4.4e-26  Score=227.34  Aligned_cols=280  Identities=15%  Similarity=0.228  Sum_probs=210.0

Q ss_pred             eEEecC--CCCeEEEeccc-----------------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcc
Q 009203          200 LVRTSA--SPATIHCHTSN-----------------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGA  260 (540)
Q Consensus       200 ~~~~~~--~d~~i~~~~~~-----------------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~  260 (540)
                      .+++++  .|+.+++|+.+                 .....|.+.|+|+.|+|| |.+||+|+.|+.|.||..... ...
T Consensus        27 ~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~~~~~-~~~  104 (942)
T KOG0973|consen   27 KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWERAEI-GSG  104 (942)
T ss_pred             eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC-CCeEeeccCcceEEEeeeccc-CCc
Confidence            455666  67888888553                 225689999999999996 999999999999999998841 111


Q ss_pred             eeecc-----------cccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccce
Q 009203          261 SLLST-----------TDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGII  329 (540)
Q Consensus       261 ~~~~~-----------~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v  329 (540)
                      .....           ......+|...|..++|+|++.+|+++    +.|++|.||+..+.   .++..+.+   |.+.|
T Consensus       105 ~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~----s~DnsViiwn~~tF---~~~~vl~~---H~s~V  174 (942)
T KOG0973|consen  105 TVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV----SLDNSVIIWNAKTF---ELLKVLRG---HQSLV  174 (942)
T ss_pred             ccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe----cccceEEEEccccc---eeeeeeec---ccccc
Confidence            11100           011125899999999999999999999    99999999999985   66777776   77889


Q ss_pred             eEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc-eeecccCCcceeEEEeccCCCEEEEEeC----CCeEEEEECC
Q 009203          330 NSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK-ALHRNLHSSAVMGVAGMQQKQIVLSAGA----DKRIIGFDAG  404 (540)
Q Consensus       330 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~~~----dg~i~iwd~~  404 (540)
                      ..+.|.| -|++|++-+.|++|+||++.+-....... .+....-......+.|||||.+|++...    -.++.|.+-.
T Consensus       175 KGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~  253 (942)
T KOG0973|consen  175 KGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG  253 (942)
T ss_pred             cceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC
Confidence            9999999 99999999999999999976633211111 1111123456788999999999998654    2357777765


Q ss_pred             CCCe-eeeeccCccEEEEeecCCC---C-----------CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC
Q 009203          405 VGRA-DFKHQIESKCMSVLPNPCD---F-----------NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA  469 (540)
Q Consensus       405 ~~~~-~~~~~~~~~~~~~~~~~~~---~-----------~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  469 (540)
                      +-+. .....+...+..+.|+|.=   .           ....+|+|+.|++|.||.....+..+...      .-....
T Consensus       254 tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~------~lf~~S  327 (942)
T KOG0973|consen  254 TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH------NLFNKS  327 (942)
T ss_pred             CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh------hhhcCc
Confidence            5443 2335566788888898730   0           11278999999999999997666544322      123458


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          470 LINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       470 v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      |..++|+|||-.|++++.||+|.++.++.
T Consensus       328 I~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  328 IVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             eeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            99999999999999999999999999985

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.9e-25  Score=220.04  Aligned_cols=248  Identities=17%  Similarity=0.109  Sum_probs=182.3

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC----------ceeEEeecCCCCcccceeEEEEeCCCCCEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG----------RACVTFLDDKPHVKGIINSIIFLPWENPCFAT  344 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  344 (540)
                      ..|.....++++..++++    +.+.....|+...+..          ......+.   +|.+.|.+++|+|.++.+|++
T Consensus        21 ~~i~~~~~~~d~~~~~~~----n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~---GH~~~V~~v~fsP~d~~~LaS   93 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIAC----NDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL---GQEGPIIDVAFNPFDPQKLFT   93 (493)
T ss_pred             eccccccccCCCCCcEeE----CCceEEEEEecCCceEEeeccccccCCCCCceEe---CCCCCEEEEEEcCCCCCEEEE
Confidence            445556666676666666    6666666776543310          00011122   478899999999977889999


Q ss_pred             EecCCcEEEEecCCCCCccc--cceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEE
Q 009203          345 GGSDHAVVLWSERDAEDSWK--PKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMS  420 (540)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~  420 (540)
                      |+.|++|++||+.++.....  .......+|...|.+++|+|++ ++|++++.|+.|++||+.+++.+.... +...+.+
T Consensus        94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~s  173 (493)
T PTZ00421         94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITS  173 (493)
T ss_pred             EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEE
Confidence            99999999999986532110  1122336799999999999975 699999999999999999988766654 4567899


Q ss_pred             EeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC-eEEEEEcCCCCEEEEEe----CCCcEEEEe
Q 009203          421 VLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA-LINQSWSPDGLYITSGS----ADPVIHLFD  495 (540)
Q Consensus       421 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~sg~----~dg~i~iwd  495 (540)
                      +.|+|++   .+|++++.|+.|++||++++....       .+.+|.+. +..+.|.+++..|++++    .|+.|++||
T Consensus       174 la~spdG---~lLatgs~Dg~IrIwD~rsg~~v~-------tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD  243 (493)
T PTZ00421        174 LEWNLDG---SLLCTTSKDKKLNIIDPRDGTIVS-------SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD  243 (493)
T ss_pred             EEEECCC---CEEEEecCCCEEEEEECCCCcEEE-------EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence            9999987   689999999999999999876433       23456554 45678999888877654    478999999


Q ss_pred             ccCCCCccccccccc-ccceeEEEEcCCCCEEEEEE-cCCcEEEEeC
Q 009203          496 IRYSANKPSQSIRAH-QKRVFKAVWHYSHPLLISIS-SDLNIGLHKI  540 (540)
Q Consensus       496 ~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~~l~s~~-~dg~v~iw~l  540 (540)
                      +++. ..++.....+ ...+....|++++.+|++++ .|+.|++||+
T Consensus       244 lr~~-~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        244 TRKM-ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             CCCC-CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            9864 3344444333 34566678999999999887 5999999986

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=1.7e-26  Score=209.05  Aligned_cols=252  Identities=19%  Similarity=0.291  Sum_probs=195.7

Q ss_pred             cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc---------------
Q 009203          152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN---------------  216 (540)
Q Consensus       152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~---------------  216 (540)
                      ..|...|+.+...|+.|.                              .|++....+.+.||+..               
T Consensus       121 i~h~gEVnRaRymPQnp~------------------------------iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pd  170 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPN------------------------------IVATKTSSGDVYVFDYTKHPSKPKASGECRPD  170 (422)
T ss_pred             ccCCccchhhhhCCCCCc------------------------------EEEecCCCCCEEEEEeccCCCcccccccCCCc
Confidence            478999999999999773                              34444555555555332               


Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeec
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTA  295 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~  295 (540)
                      ..|.||++.-++|+|++...-.|++|+.|++|++||+.......... .......+|...|..++|++-. ..|+++   
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~-~p~~~~~~h~~~VeDV~~h~~h~~lF~sv---  246 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV-DPKTIFSGHEDVVEDVAWHPLHEDLFGSV---  246 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc-cceEEeecCCcceehhhccccchhhheee---
Confidence            25789999899999999777789999999999999998765421111 1112226999999999999954 477777   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                       +.|+.+.|||++++ ..+......   .|.+.|+|++|+|.++.+||||+.|++|.+||+++...    ......+|..
T Consensus       247 -~dd~~L~iwD~R~~-~~~~~~~~~---ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----~lh~~e~H~d  317 (422)
T KOG0264|consen  247 -GDDGKLMIWDTRSN-TSKPSHSVK---AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK----PLHTFEGHED  317 (422)
T ss_pred             -cCCCeEEEEEcCCC-CCCCccccc---ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----CceeccCCCc
Confidence             99999999999964 223333333   37889999999999999999999999999999998764    3444577999


Q ss_pred             ceeEEEeccCC-CEEEEEeCCCeEEEEECCC-CC-------------eeeeec-cCccEEEEeecCCCCCceEEEEEcCC
Q 009203          376 AVMGVAGMQQK-QIVLSAGADKRIIGFDAGV-GR-------------ADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPG  439 (540)
Q Consensus       376 ~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~-~~-------------~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d  439 (540)
                      .|.++.|+|+. ..|++++.|+.+.+||+.. ++             .++.|. +...+..+.|+|..+  ..+++.+.|
T Consensus       318 ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP--W~I~SvaeD  395 (422)
T KOG0264|consen  318 EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP--WTIASVAED  395 (422)
T ss_pred             ceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC--eEEEEecCC
Confidence            99999999964 6788889999999999965 11             124443 346778899999887  589999999


Q ss_pred             CeEEEEECC
Q 009203          440 RQLRLYDIR  448 (540)
Q Consensus       440 g~v~i~d~~  448 (540)
                      +.+.||.+.
T Consensus       396 N~LqIW~~s  404 (422)
T KOG0264|consen  396 NILQIWQMA  404 (422)
T ss_pred             ceEEEeecc
Confidence            999999986

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.8e-26  Score=217.04  Aligned_cols=311  Identities=14%  Similarity=0.172  Sum_probs=234.5

Q ss_pred             eEEecCCCCeEEEeccc-----------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--Ccceeeccc
Q 009203          200 LVRTSASPATIHCHTSN-----------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTT  266 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~  266 (540)
                      .+-+++.|+.|++|+..           ..+..|.++|+.+....+ ++.|+++|.|-+|++|+...+.  +..++    
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~sti----  113 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCMSTI----  113 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhHhhh----
Confidence            46788999999999543           237899999999999984 8899999999999999998773  33444    


Q ss_pred             ccCCCCCCCCceeEEE-ecCCCeEEEEeecCCCCCeEEEEecCCCCC-----ceeEEeecCCCCcccceeEEEEeCCCCC
Q 009203          267 DCLSPKHRRWPEDIAW-HPQGNSLFSAHTADSGDSQISVLNLNKTKG-----RACVTFLDDKPHVKGIINSIIFLPWENP  340 (540)
Q Consensus       267 ~~~~~~h~~~V~~~~~-~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~  340 (540)
                          ..|.+.|.|+++ .++...+|+|    +-|+.|.+||++++..     ...+..-....++...|++++-++ ++.
T Consensus       114 ----r~H~DYVkcla~~ak~~~lvaSg----GLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t  184 (735)
T KOG0308|consen  114 ----RTHKDYVKCLAYIAKNNELVASG----GLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGT  184 (735)
T ss_pred             ----hcccchheeeeecccCceeEEec----CCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cce
Confidence                589999999999 7788899998    9999999999998732     011111111114677899999999 899


Q ss_pred             EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEE
Q 009203          341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCM  419 (540)
Q Consensus       341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~  419 (540)
                      .|++|+..+.+++||.++.+.     .+...+|+..|.++..++||..+++++.||+|++||+...+++..+..+ ..+.
T Consensus       185 ~ivsGgtek~lr~wDprt~~k-----imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW  259 (735)
T KOG0308|consen  185 IIVSGGTEKDLRLWDPRTCKK-----IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW  259 (735)
T ss_pred             EEEecCcccceEEeccccccc-----eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence            999999999999999999874     4444689999999999999999999999999999999998888775443 3466


Q ss_pred             EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203          420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS  499 (540)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~  499 (540)
                      ++..+|+=   ..+.+|+.||.|..-|+++.......+       ....+|..+..+.+.+-+-+++.|+.|.-|.....
T Consensus       260 aL~~~~sf---~~vYsG~rd~~i~~Tdl~n~~~~tlic-------k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  260 ALQSSPSF---THVYSGGRDGNIYRTDLRNPAKSTLIC-------KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             EEeeCCCc---ceEEecCCCCcEEecccCCchhheEee-------cCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence            66666543   689999999999999999864333322       12345666666654444566667888888866521


Q ss_pred             C-----Ccccc------------------cccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          500 A-----NKPSQ------------------SIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       500 ~-----~~~~~------------------~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .     +.+..                  .+.| ..+|..-+.-.|-++++|=..+|.+.+||+
T Consensus       330 ~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDI  392 (735)
T KOG0308|consen  330 IALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDI  392 (735)
T ss_pred             cccccCCCCCcccccCCCccccccCCCceeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEe
Confidence            0     11110                  1111 113444445557789999999999999996

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.6e-27  Score=205.72  Aligned_cols=279  Identities=16%  Similarity=0.205  Sum_probs=215.7

Q ss_pred             eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccC
Q 009203          150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKR  224 (540)
Q Consensus       150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~  224 (540)
                      .+.||...|.+++-+|..                              ...+++++.|+.|++|+..     ..+..|.+
T Consensus        61 ~L~gHrdGV~~lakhp~~------------------------------ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G  110 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNK------------------------------LSTVASGSCDGEVKIWNLSQRECIRTFKAHEG  110 (433)
T ss_pred             hccccccccchhhcCcch------------------------------hhhhhccccCceEEEEehhhhhhhheeecccC
Confidence            346787777777766663                              3468899999999999876     46899999


Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      .|..|++.-   ..+++++.|.+|+.|.+... ...++..         ...+..+.-+..+..++++      ...|.|
T Consensus       111 ~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~-p~~tilg---------~s~~~gIdh~~~~~~FaTc------Ge~i~I  171 (433)
T KOG0268|consen  111 LVRGICVTQ---TSFFTVGDDKTVKQWKIDGP-PLHTILG---------KSVYLGIDHHRKNSVFATC------GEQIDI  171 (433)
T ss_pred             ceeeEEecc---cceEEecCCcceeeeeccCC-cceeeec---------ccccccccccccccccccc------Cceeee
Confidence            999999985   45789999999999998763 3344422         2345667777777788887      345999


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  384 (540)
                      ||.....   +++.+.-   ..+.|.++.|+|....+|++|+.|+.|.+||++++..+.++.      -.-.-+.|+|+|
T Consensus       172 WD~~R~~---Pv~smsw---G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi------~~mRTN~IswnP  239 (433)
T KOG0268|consen  172 WDEQRDN---PVSSMSW---GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI------LTMRTNTICWNP  239 (433)
T ss_pred             cccccCC---ccceeec---CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee------eeccccceecCc
Confidence            9997653   3444443   135699999999888889999999999999999988633222      234467899999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCe-eee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc
Q 009203          385 QKQIVLSAGADKRIIGFDAGVGRA-DFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE  462 (540)
Q Consensus       385 ~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  462 (540)
                      .+-.+++++.|..++.||++.... +.. ..+.+.++++.|+|.+   .-+++|+.|.+|+||..+.+...-..      
T Consensus       240 eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG---~EfvsgsyDksIRIf~~~~~~SRdiY------  310 (433)
T KOG0268|consen  240 EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG---QEFVSGSYDKSIRIFPVNHGHSRDIY------  310 (433)
T ss_pred             cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc---chhccccccceEEEeecCCCcchhhh------
Confidence            888999999999999999997544 333 3445788999999988   68999999999999999866521110      


Q ss_pred             cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          463 SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ....-..|.|+.||-|.+|+++|+.|+.|++|....
T Consensus       311 htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  311 HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             hHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence            011234699999999999999999999999998875

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=1.2e-25  Score=192.01  Aligned_cols=297  Identities=16%  Similarity=0.153  Sum_probs=222.5

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC--cceeecc-----cccCCCCCCCCceeEEEecCCC-eEEE
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS--GASLLST-----TDCLSPKHRRWPEDIAWHPQGN-SLFS  291 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~-----~~~~~~~h~~~V~~~~~~~~~~-~l~s  291 (540)
                      .-|.+.|+++...+..|+++++|+.||.|.+||++....  ..-+...     ......+|.-.|.++.|.|-.. .+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            578899999999998899999999999999999976431  1111111     1112258999999999999544 6666


Q ss_pred             EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccceee
Q 009203          292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPKALH  369 (540)
Q Consensus       292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  369 (540)
                      +    +.|.+++|||.++.   +....|..    .+.|.+-+++|-.  -.++++|..|-.|++.|+..|.+   ...+ 
T Consensus       120 s----SFDhtlKVWDtnTl---Q~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~---sH~L-  184 (397)
T KOG4283|consen  120 S----SFDHTLKVWDTNTL---QEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF---SHTL-  184 (397)
T ss_pred             c----cccceEEEeecccc---eeeEEeec----CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc---eeee-
Confidence            6    99999999999986   33444442    4668888888732  34678888899999999999986   3333 


Q ss_pred             cccCCcceeEEEeccCCCE-EEEEeCCCeEEEEECCCC-Ceeee---------------eccCccEEEEeecCCCCCceE
Q 009203          370 RNLHSSAVMGVAGMQQKQI-VLSAGADKRIIGFDAGVG-RADFK---------------HQIESKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       370 ~~~~~~~v~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~  432 (540)
                       .+|.+.|.++.|+|...+ |++|+.||.|++||++.. .+...               ..+.+.+..++|..++   .+
T Consensus       185 -sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~---~~  260 (397)
T KOG4283|consen  185 -SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA---RY  260 (397)
T ss_pred             -ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc---hh
Confidence             679999999999997654 678999999999999864 22111               1234677888998887   78


Q ss_pred             EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc
Q 009203          433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK  512 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~  512 (540)
                      +++++.|..+++|+...+......++.........-.+. +. +-+...++---.++.+.++++-.  +..+..+..|..
T Consensus       261 l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~s--gs~ir~l~~h~k  336 (397)
T KOG4283|consen  261 LASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLE--GSFVRRLSTHLK  336 (397)
T ss_pred             hhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccC--ceEEEeeecccc
Confidence            999999999999999988876655543221111111222 22 33444455445668899999987  788899999988


Q ss_pred             ceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          513 RVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       513 ~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .|.+.++.|+-+.+.+|+.|+.|..|-
T Consensus       337 ~i~c~~~~~~fq~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  337 RINCAAYRPDFEQCFTGDMNGNIYMWS  363 (397)
T ss_pred             eeeEEeecCchhhhhccccCCcccccc
Confidence            999999999999999999999999984

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.4e-26  Score=220.54  Aligned_cols=298  Identities=17%  Similarity=0.193  Sum_probs=210.8

Q ss_pred             CCCCCCCCCeeeec-CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-
Q 009203          139 SGAKDPSGSSTQAS-PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-  216 (540)
Q Consensus       139 ~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-  216 (540)
                      ...+....+.++++ .|.++|-++.|.+...                               .+|+++.|+.|+||... 
T Consensus       250 ~kelsal~~~Qe~~~ah~gaIw~mKFS~DGK-------------------------------yLAsaGeD~virVWkVie  298 (712)
T KOG0283|consen  250 PKELSALTVVQEISNAHKGAIWAMKFSHDGK-------------------------------YLASAGEDGVIRVWKVIE  298 (712)
T ss_pred             cccceeeEEeeccccccCCcEEEEEeCCCCc-------------------------------eeeecCCCceEEEEEEec
Confidence            34455566667888 8999999999998753                               68999999999999543 


Q ss_pred             -hhcccccCceEEEEEecC-CCc----------------EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCce
Q 009203          217 -HVSSLHKRKLRSLSLNPV-NEQ----------------LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE  278 (540)
Q Consensus       217 -~~~~~h~~~V~~l~~spd-~~~----------------~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~  278 (540)
                       ..+..+.+.-.++-+.-. ++.                ..-.+.....+.+ +...    ..+....-+...||.+.|.
T Consensus       299 ~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~-p~~~----f~f~ekP~~ef~GHt~DIL  373 (712)
T KOG0283|consen  299 SERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLL-PLKA----FVFSEKPFCEFKGHTADIL  373 (712)
T ss_pred             cchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccC-CCcc----ccccccchhhhhccchhhe
Confidence             122223232222222110 010                0111111111111 1110    1111111222369999999


Q ss_pred             eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC
Q 009203          279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD  358 (540)
Q Consensus       279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  358 (540)
                      ++.|+.+ ++|+++    +.|.+|++|++...   .|+..|.    |.+.|+|++|+|.|.++|++|+-||.|+||++..
T Consensus       374 DlSWSKn-~fLLSS----SMDKTVRLWh~~~~---~CL~~F~----HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d  441 (712)
T KOG0283|consen  374 DLSWSKN-NFLLSS----SMDKTVRLWHPGRK---ECLKVFS----HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD  441 (712)
T ss_pred             ecccccC-CeeEec----cccccEEeecCCCc---ceeeEEe----cCCeeEEEEecccCCCcEeecccccceEEeecCc
Confidence            9999976 588888    99999999999864   7888886    7899999999999999999999999999999988


Q ss_pred             CCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc---------CccEEEEeecCCCCC
Q 009203          359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI---------ESKCMSVLPNPCDFN  429 (540)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  429 (540)
                      .+      +.....-..-|++++|.|||+..+.|+.+|.+++|++...+.......         ...++.+.|.|....
T Consensus       442 ~~------Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~  515 (712)
T KOG0283|consen  442 KK------VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD  515 (712)
T ss_pred             Ce------eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC
Confidence            65      233333447899999999999999999999999999997766433211         236899999987765


Q ss_pred             ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          430 LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       430 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                        .+++.+.|..|+|||.++.......-++..     ...-....|+.||++|+++++|..|+||++.
T Consensus       516 --~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-----~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  516 --EVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-----TSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             --eEEEecCCCceEEEeccchhhhhhhccccc-----CCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence              577778899999999977665443222211     1223556899999999999999999999984

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.9e-25  Score=199.04  Aligned_cols=243  Identities=18%  Similarity=0.222  Sum_probs=192.6

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      ++|.+.|.+++.+|| |++||+|+.|..|.||+..+.+.+..+        .+|.+.|.+++|-.....|+++    +.|
T Consensus       199 ~~h~keil~~avS~D-gkylatgg~d~~v~Iw~~~t~ehv~~~--------~ghr~~V~~L~fr~gt~~lys~----s~D  265 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSD-GKYLATGGRDRHVQIWDCDTLEHVKVF--------KGHRGAVSSLAFRKGTSELYSA----SAD  265 (479)
T ss_pred             ccccceeEEEEEcCC-CcEEEecCCCceEEEecCcccchhhcc--------cccccceeeeeeecCccceeee----ecC
Confidence            389999999999997 999999999999999999999887776        6999999999999888899999    999


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      +.|++|+++..   ..+.++.+   |.+.|.+|.... -...+-+|+.|+++++|++....      .+...++.+.+-|
T Consensus       266 rsvkvw~~~~~---s~vetlyG---Hqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ees------qlifrg~~~sidc  332 (479)
T KOG0299|consen  266 RSVKVWSIDQL---SYVETLYG---HQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEES------QLIFRGGEGSIDC  332 (479)
T ss_pred             CceEEEehhHh---HHHHHHhC---Cccceeeechhc-ccceEEeccccceeEEEeccccc------eeeeeCCCCCeee
Confidence            99999999864   33444444   677899998886 66677777799999999995543      2333568889999


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------------CccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-------------ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD  446 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d  446 (540)
                      ++|- +...+++|+.+|.|.+|++.+.++++....             ...+.+++..|..   .++++|+.+|.|++|-
T Consensus       333 v~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s---dL~asGS~~G~vrLW~  408 (479)
T KOG0299|consen  333 VAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS---DLLASGSWSGCVRLWK  408 (479)
T ss_pred             EEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC---ceEEecCCCCceEEEE
Confidence            9997 457889999999999999999888765322             1167777777766   6999999999999999


Q ss_pred             CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEec
Q 009203          447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDI  496 (540)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~  496 (540)
                      +..+-..+..+.   .++ -.+.|++++|+++|+.|++| +....+-=|-.
T Consensus       409 i~~g~r~i~~l~---~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  409 IEDGLRAINLLY---SLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             ecCCccccceee---ecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence            998744333221   222 45689999999999976665 34444444433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.6e-25  Score=215.09  Aligned_cols=275  Identities=16%  Similarity=0.221  Sum_probs=218.0

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      .+|+.+-+.|+|.|+ |.+|++++.||.|++|+.... +...++.        .+...|.+++..  +.+|+++    +.
T Consensus        10 yaht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~--------~~g~~v~~ia~~--s~~f~~~----s~   74 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETID--------ISGELVSSIACY--SNHFLTG----SE   74 (933)
T ss_pred             hhccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhh--------ccCceeEEEeec--ccceEEe----ec
Confidence            379999999999996 889999999999999998776 3333331        244556666654  5589998    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      +++|.+|.+.++.....+..+.      -++.+++|+- +|.+++.|+.|-.|++.++.+...     .....+|.++|.
T Consensus        75 ~~tv~~y~fps~~~~~iL~Rft------lp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~-----~~~lrgh~apVl  142 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEEDTILARFT------LPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ-----EKVLRGHDAPVL  142 (933)
T ss_pred             cceEEEeeCCCCCccceeeeee------ccceEEEEec-CCcEEEeecCceeEEEEeccccch-----heeecccCCcee
Confidence            9999999999887665666554      4689999999 999999999999999999988763     334467999999


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec---------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ---------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL  449 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  449 (540)
                      ++.|+|++++|++.+.||.|++||+.++.+.....         ....+..++|+|.+   ..++....|+.|++|+..+
T Consensus       143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~---g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG---GTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC---CeEEeeccCCeEEEEccCC
Confidence            99999999999999999999999999887643321         13456788999997   4677788899999999998


Q ss_pred             CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE
Q 009203          450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI  529 (540)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~  529 (540)
                      +.......     ...+...+..++|+|+|.|||+++.||.|.|||+++  ...    ..-...|.+++|.|+.+.+-..
T Consensus       220 we~~f~Lr-----~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t--~~~----~~~~~~Vc~~aw~p~~n~it~~  288 (933)
T KOG1274|consen  220 WELQFKLR-----DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT--HER----HEFKRAVCCEAWKPNANAITLI  288 (933)
T ss_pred             ceeheeec-----ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc--chh----ccccceeEEEecCCCCCeeEEE
Confidence            88654332     233445599999999999999999999999999996  111    2224579999999998765544


Q ss_pred             EcCCcE
Q 009203          530 SSDLNI  535 (540)
Q Consensus       530 ~~dg~v  535 (540)
                      ...|..
T Consensus       289 ~~~g~~  294 (933)
T KOG1274|consen  289 TALGTL  294 (933)
T ss_pred             eecccc
Confidence            444443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.7e-25  Score=189.72  Aligned_cols=257  Identities=17%  Similarity=0.297  Sum_probs=196.7

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce-eEEeecCCCCcccceeEEEEe-CCCCCEEEEEecC
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA-CVTFLDDKPHVKGIINSIIFL-PWENPCFATGGSD  348 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~d  348 (540)
                      .+|.+-|+++.|.+.|+.+|+|    +.|++|+|||.+...+.. +.....   .|.+.|..+.|. |.-|+.+++++.|
T Consensus        10 s~h~DlihdVs~D~~GRRmAtC----SsDq~vkI~d~~~~s~~W~~Ts~Wr---ah~~Si~rV~WAhPEfGqvvA~cS~D   82 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATC----SSDQTVKIWDSTSDSGTWSCTSSWR---AHDGSIWRVVWAHPEFGQVVATCSYD   82 (361)
T ss_pred             cCCcceeeeeeecccCceeeec----cCCCcEEEEeccCCCCceEEeeeEE---ecCCcEEEEEecCccccceEEEEecC
Confidence            5899999999999999999999    999999999976554332 223333   377889999996 4458999999999


Q ss_pred             CcEEEEecCCCCC-----ccccceeecccCCcceeEEEecc--CCCEEEEEeCCCeEEEEECCCCCeee------ee---
Q 009203          349 HAVVLWSERDAED-----SWKPKALHRNLHSSAVMGVAGMQ--QKQIVLSAGADKRIIGFDAGVGRADF------KH---  412 (540)
Q Consensus       349 g~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~------~~---  412 (540)
                      +++.||.-.....     .|.. ........+.|+++.|.|  -|-.+++++.||.+|||+.-....+.      .+   
T Consensus        83 rtv~iWEE~~~~~~~~~~~Wv~-~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   83 RTVSIWEEQEKSEEAHGRRWVR-RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV  161 (361)
T ss_pred             CceeeeeecccccccccceeEE-EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence            9999997632211     1111 112234668899999988  47789999999999999875432211      11   


Q ss_pred             -----ccCccEEEEeecCCCCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC----
Q 009203          413 -----QIESKCMSVLPNPCDFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD----  478 (540)
Q Consensus       413 -----~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----  478 (540)
                           .....+.++.|+|......+|+.|+.+     +.++||...........   ..++.+|..+|+.++|.|+    
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k---va~L~d~~dpI~di~wAPn~Gr~  238 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK---VAELPDHTDPIRDISWAPNIGRS  238 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee---ehhcCCCCCcceeeeeccccCCc
Confidence                 134567789999887666789998876     57999988765533322   2367799999999999996    


Q ss_pred             CCEEEEEeCCCcEEEEeccCCC------------------CcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          479 GLYITSGSADPVIHLFDIRYSA------------------NKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       479 g~~l~sg~~dg~i~iwd~~~~~------------------~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ...||+++.|| |+||.+....                  -+.+..+..|.+.|+.+.|+-.|..|++.|.||+||+|+
T Consensus       239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence            25699999999 9999998310                  123445678999999999999999999999999999996

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=1.9e-24  Score=204.95  Aligned_cols=337  Identities=12%  Similarity=0.093  Sum_probs=248.6

Q ss_pred             ceEEecccccccce------------EEecCCCCeEEEeccc------------------------------------hh
Q 009203          187 RKFEQKEHRELIPL------------VRTSASPATIHCHTSN------------------------------------HV  218 (540)
Q Consensus       187 ~~~~~~~~~~~v~~------------~~~~~~d~~i~~~~~~------------------------------------~~  218 (540)
                      ....+.+|..+|+.            +++++.|+.|++|...                                    .+
T Consensus       183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal  262 (764)
T KOG1063|consen  183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL  262 (764)
T ss_pred             EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence            34556899998864            6678899999999320                                    23


Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +.||.+.|+++.|+|+ +..|++++.|.++.+|.-.+...+..-....... .|......+.-|+|+++.+++-    +.
T Consensus       263 l~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~-gg~a~GF~g~lw~~n~~~ii~~----g~  336 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV-GGSAGGFWGGLWSPNSNVIIAH----GR  336 (764)
T ss_pred             hcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEEEEEEeecc-cccccceeeEEEcCCCCEEEEe----cc
Confidence            5699999999999995 8889999999999999887654333222221111 2445668899999999999888    89


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-----------------
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED-----------------  361 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-----------------  361 (540)
                      .|..++|.......-.....+.   +|.+.|.+++|+| .|.+|++.+.|.+-|+|-.-..+.                 
T Consensus       337 ~Gg~hlWkt~d~~~w~~~~~iS---GH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c  412 (764)
T KOG1063|consen  337 TGGFHLWKTKDKTFWTQEPVIS---GHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTC  412 (764)
T ss_pred             cCcEEEEeccCccceeeccccc---cccccceeeeecC-CCCEEEEeccccceeeecccccccceeeeccccccccccee
Confidence            9999999833221111122223   4778899999999 999999999998887764321100                 


Q ss_pred             -------------------------------------------------------------cc-----------------
Q 009203          362 -------------------------------------------------------------SW-----------------  363 (540)
Q Consensus       362 -------------------------------------------------------------~~-----------------  363 (540)
                                                                                   ..                 
T Consensus       413 ~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~  492 (764)
T KOG1063|consen  413 LSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP  492 (764)
T ss_pred             eehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence                                                                         00                 


Q ss_pred             ---------c-------------cceeecccCCcceeEEEeccCCCEEEEEeCCC-----eEEEEECCCCCeeee-eccC
Q 009203          364 ---------K-------------PKALHRNLHSSAVMGVAGMQQKQIVLSAGADK-----RIIGFDAGVGRADFK-HQIE  415 (540)
Q Consensus       364 ---------~-------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~-~~~~  415 (540)
                               .             +..-...+|...|++++.+|+|+++++++...     .|++|+..+-..... ..+.
T Consensus       493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs  572 (764)
T KOG1063|consen  493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS  572 (764)
T ss_pred             cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc
Confidence                     0             00011256889999999999999999988643     599999988665553 4455


Q ss_pred             ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          416 SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      -.+..+.|+|++   ++|++.+.|.++.+|...........+   ...+.|..-|+++.|+|++.+++|++.|..|.||.
T Consensus       573 LTVT~l~FSpdg---~~LLsvsRDRt~sl~~~~~~~~~e~~f---a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  573 LTVTRLAFSPDG---RYLLSVSRDRTVSLYEVQEDIKDEFRF---ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             eEEEEEEECCCC---cEEEEeecCceEEeeeeecccchhhhh---ccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            678899999999   899999999999999986544322222   13678999999999999999999999999999999


Q ss_pred             ccCCCCccccc--ccccccceeEEEEcCCC-----CEEEEEEcCCcEEEEe
Q 009203          496 IRYSANKPSQS--IRAHQKRVFKAVWHYSH-----PLLISISSDLNIGLHK  539 (540)
Q Consensus       496 ~~~~~~~~~~~--~~~h~~~i~~l~~s~~~-----~~l~s~~~dg~v~iw~  539 (540)
                      ......+.+..  ...+...|+.++|.|-.     ..++.|-..|.|.+|+
T Consensus       647 ~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  647 EPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR  697 (764)
T ss_pred             ccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence            98732233322  33578899999998732     3677788889999997

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=2.5e-25  Score=199.75  Aligned_cols=236  Identities=19%  Similarity=0.254  Sum_probs=201.3

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      .+.++...|....+++|    +.|..+.++|..++   +.+..+.+   |.-.|+.+.|+| +...+++++.|..|+||.
T Consensus       221 gi~ald~~~s~~~ilTG----G~d~~av~~d~~s~---q~l~~~~G---h~kki~~v~~~~-~~~~v~~aSad~~i~vws  289 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTG----GEDKTAVLFDKPSN---QILATLKG---HTKKITSVKFHK-DLDTVITASADEIIRVWS  289 (506)
T ss_pred             CeeEEeecCCCCcceec----CCCCceEEEecchh---hhhhhccC---cceEEEEEEecc-chhheeecCCcceEEeec
Confidence            36677777777789998    99999999999876   55666765   677899999999 999999999999999999


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceE
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  432 (540)
                      ......   ....  ..|..+|+.+..+|.|.||++++.||+..+.|++++..+......   ....+..|+|++   .+
T Consensus       290 ~~~~s~---~~~~--~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---Li  361 (506)
T KOG0289|consen  290 VPLSSE---PTSS--RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---LI  361 (506)
T ss_pred             cccccC---cccc--ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc---eE
Confidence            987664   2222  459999999999999999999999999999999999998775553   557899999998   89


Q ss_pred             EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-c
Q 009203          433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-Q  511 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~  511 (540)
                      +++|..|+.|+|||+.......       .+.+|.++|..++|+.+|-||+++++|+.|++||++.  .+.+.++.-. .
T Consensus       362 fgtgt~d~~vkiwdlks~~~~a-------~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK--l~n~kt~~l~~~  432 (506)
T KOG0289|consen  362 FGTGTPDGVVKIWDLKSQTNVA-------KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK--LKNFKTIQLDEK  432 (506)
T ss_pred             EeccCCCceEEEEEcCCccccc-------cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh--hcccceeecccc
Confidence            9999999999999999877433       5678999999999999999999999999999999997  4555555432 2


Q ss_pred             cceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          512 KRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       512 ~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ..|.++.|.+.|.+|+.+|.|=+|++++
T Consensus       433 ~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  433 KEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            3799999999999999998887777764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.2e-25  Score=199.81  Aligned_cols=262  Identities=14%  Similarity=0.131  Sum_probs=207.1

Q ss_pred             EEEEE-eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeE
Q 009203          238 LFVTS-ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACV  316 (540)
Q Consensus       238 ~l~tg-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~  316 (540)
                      +++++ .....+.+|.+.........        .--.++|.+++-+|+|.+|+.|    +..|.|++|.+.+|   ..+
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~q~--------~v~Pg~v~al~s~n~G~~l~ag----~i~g~lYlWelssG---~LL  116 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVVQY--------IVLPGPVHALASSNLGYFLLAG----TISGNLYLWELSSG---ILL  116 (476)
T ss_pred             heeeecccCccccccccCchhhhhhh--------cccccceeeeecCCCceEEEee----cccCcEEEEEeccc---cHH
Confidence            45544 44567899999765543311        1234679999999999999998    89999999999998   556


Q ss_pred             EeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC---c-cccceeecccCCcceeEEEeccC--CCEEE
Q 009203          317 TFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED---S-WKPKALHRNLHSSAVMGVAGMQQ--KQIVL  390 (540)
Q Consensus       317 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~---~-~~~~~~~~~~~~~~v~~l~~s~~--~~~l~  390 (540)
                      ..+..   |-..|+|+.|+- |+.+|+||+.||.|.+|++.+--.   . ..........|+-+|+++...+.  ...|+
T Consensus       117 ~v~~a---HYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~  192 (476)
T KOG0646|consen  117 NVLSA---HYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY  192 (476)
T ss_pred             HHHHh---hccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence            66654   556799999999 999999999999999998743110   0 00122233569999999998764  46899


Q ss_pred             EEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee--------ee-cccc
Q 009203          391 SAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH--------AF-GWKQ  461 (540)
Q Consensus       391 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~--------~~-~~~~  461 (540)
                      +++.|.++++||+..|..+.....+..+.+++.+|.+   ..+++|+.+|.|.+.++........        .. .-..
T Consensus       193 TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae---~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~  269 (476)
T KOG0646|consen  193 TASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAE---RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN  269 (476)
T ss_pred             EecCCceEEEEEeccceeeEEEecCCcceeEEEcccc---cEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence            9999999999999999999999999999999999988   7899999999999998875431110        00 0113


Q ss_pred             ccCcccc--CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203          462 ESSESQS--ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH  523 (540)
Q Consensus       462 ~~~~~~~--~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~  523 (540)
                      .+.+|.+  .|+|++++-||..|++|+.||.|+|||+.+  .++++++....++|+.+.+.|-.
T Consensus       270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S--~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS--KQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch--HHHHHHHhhhccccceeEeeccc
Confidence            5678888  999999999999999999999999999998  78888888678899999986643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=7.9e-24  Score=193.65  Aligned_cols=290  Identities=18%  Similarity=0.204  Sum_probs=223.2

Q ss_pred             hccccc-CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          218 VSSLHK-RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~-~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      ++.++. .-|.||+|.++ |. ++||..+|.|.||+..+.+..++.        ..|.+.|.+++...+|.+|- |    
T Consensus       240 ~fek~ekk~Vl~v~F~en-gd-viTgDS~G~i~Iw~~~~~~~~k~~--------~aH~ggv~~L~~lr~GtllS-G----  304 (626)
T KOG2106|consen  240 IFEKREKKFVLCVTFLEN-GD-VITGDSGGNILIWSKGTNRISKQV--------HAHDGGVFSLCMLRDGTLLS-G----  304 (626)
T ss_pred             ccccccceEEEEEEEcCC-CC-EEeecCCceEEEEeCCCceEEeEe--------eecCCceEEEEEecCccEee-c----
Confidence            455554 56999999994 65 789999999999999765543333        37899999999999997655 8    


Q ss_pred             CCCCeEEEEecCCCCC---------ceeEEeecCC-------------------------CCcccceeEEEEeCCCCCEE
Q 009203          297 SGDSQISVLNLNKTKG---------RACVTFLDDK-------------------------PHVKGIINSIIFLPWENPCF  342 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~---------~~~~~~~~~~-------------------------~~~~~~v~~~~~~p~~~~~l  342 (540)
                      +.|..|..||-+-.+.         .......+++                         ..|....+.++.+| +.+++
T Consensus       305 gKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~  383 (626)
T KOG2106|consen  305 GKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQL  383 (626)
T ss_pred             CccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-Chhhe
Confidence            9999999998331100         0000011110                         03556788999999 88999


Q ss_pred             EEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEe
Q 009203          343 ATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVL  422 (540)
Q Consensus       343 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  422 (540)
                      ++++.|+.+++|+  ..+..|...      -..++.|+.|+|.| .++.|+..|...+.|.++...+..+....++..+.
T Consensus       384 ~T~gqdk~v~lW~--~~k~~wt~~------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~  454 (626)
T KOG2106|consen  384 LTCGQDKHVRLWN--DHKLEWTKI------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVR  454 (626)
T ss_pred             eeccCcceEEEcc--CCceeEEEE------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEE
Confidence            9999999999999  433333222      45788999999999 99999999999999999977777777788999999


Q ss_pred             ecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC----
Q 009203          423 PNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY----  498 (540)
Q Consensus       423 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~----  498 (540)
                      |+|++   .+||.|+.|+.|++|-+..........+     .-+..+|+.+.||+|+++|.+-+.|-.|..|....    
T Consensus       455 ysp~G---~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-----k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~  526 (626)
T KOG2106|consen  455 YSPDG---AFLAVGSHDNHIYIYRVSANGRKYSRVG-----KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI  526 (626)
T ss_pred             EcCCC---CEEEEecCCCeEEEEEECCCCcEEEEee-----eecCceeEEeeecCCCceEEeccCceEEEEEccccCccc
Confidence            99998   7999999999999999987766554433     22337999999999999999999898888884330    


Q ss_pred             ---------------------------------------------------------CCCcccccccccccceeEEEEcC
Q 009203          499 ---------------------------------------------------------SANKPSQSIRAHQKRVFKAVWHY  521 (540)
Q Consensus       499 ---------------------------------------------------------~~~~~~~~~~~h~~~i~~l~~s~  521 (540)
                                                                               ....+...+.+|.+-|++++|.-
T Consensus       527 ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~  606 (626)
T KOG2106|consen  527 TSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLC  606 (626)
T ss_pred             ceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEee
Confidence                                                                     00112233457888999999998


Q ss_pred             CCCEEEEEEcCCcEEEEeC
Q 009203          522 SHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       522 ~~~~l~s~~~dg~v~iw~l  540 (540)
                      +...|++.+.|..|..|++
T Consensus       607 ~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  607 KDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             CCceEEecCCCceEEEEEe
Confidence            8888888889999999986

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.3e-25  Score=186.94  Aligned_cols=261  Identities=16%  Similarity=0.210  Sum_probs=199.9

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCCeEEEEeec
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSAHTA  295 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~~  295 (540)
                      |..+|.+.|..+...- .|..|||++.|++|+|+.+...... .+....    .||.++|..++|..  .|.+||++   
T Consensus         6 idt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s-~ll~~L----~Gh~GPVwqv~wahPk~G~iLASc---   76 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQS-KLLAEL----TGHSGPVWKVAWAHPKFGTILASC---   76 (299)
T ss_pred             hhhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCc-eeeeEe----cCCCCCeeEEeecccccCcEeeEe---
Confidence            4568999999988887 5999999999999999999876541 122221    69999999999965  79999999   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-CCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                       +.||.|.||.-..+.    -.....+..|.+.|++++|.|.+ |-.|++++.||.|.|.+.+.... +....+ ...|.
T Consensus        77 -sYDgkVIiWke~~g~----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-w~t~ki-~~aH~  149 (299)
T KOG1332|consen   77 -SYDGKVIIWKEENGR----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-WTTSKI-VFAHE  149 (299)
T ss_pred             -ecCceEEEEecCCCc----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-ccchhh-hhccc
Confidence             999999999988762    22222333578899999999843 56788999999999999887521 111111 24599


Q ss_pred             cceeEEEeccC---C-----------CEEEEEeCCCeEEEEECCCCCeeee---eccCccEEEEeecCCC-CCceEEEEE
Q 009203          375 SAVMGVAGMQQ---K-----------QIVLSAGADKRIIGFDAGVGRADFK---HQIESKCMSVLPNPCD-FNLFMVQTG  436 (540)
Q Consensus       375 ~~v~~l~~s~~---~-----------~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~l~~~  436 (540)
                      -.|++++|.|.   |           +.|++|+.|..|+||+..++.-...   ..+...+..++|.|.- ....+++++
T Consensus       150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~  229 (299)
T KOG1332|consen  150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC  229 (299)
T ss_pred             cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence            99999999885   4           5699999999999999998643322   3345677888888864 233689999


Q ss_pred             cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      +.||+|.||-.+........    ..+......+..+.||+.|++|++++.|+.|.+|.-+.
T Consensus       230 SqDg~viIwt~~~e~e~wk~----tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  230 SQDGTVIIWTKDEEYEPWKK----TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             cCCCcEEEEEecCccCcccc----cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            99999999988733221111    12334566899999999999999999999999997664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.3e-25  Score=189.06  Aligned_cols=284  Identities=13%  Similarity=0.189  Sum_probs=213.7

Q ss_pred             eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203          226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL  305 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw  305 (540)
                      ..|+.|++ .|.+||+|+.||.|.|||+.+......+        .+|..+|++++|++||+.|+++    +.|..|.+|
T Consensus        26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~l--------saH~~pi~sl~WS~dgr~Llts----S~D~si~lw   92 (405)
T KOG1273|consen   26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARML--------SAHVRPITSLCWSRDGRKLLTS----SRDWSIKLW   92 (405)
T ss_pred             cceEEecc-CcceeeeeccCCcEEEEEccccchhhhh--------hccccceeEEEecCCCCEeeee----cCCceeEEE
Confidence            78999999 6999999999999999999987654444        6899999999999999999999    999999999


Q ss_pred             ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec--cc-CCcceeEEEe
Q 009203          306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR--NL-HSSAVMGVAG  382 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~-~~~~v~~l~~  382 (540)
                      |+..|.   ++..+..    .++|+...|+|.+.+.+++.-.+..-.+-++..+..    ..+..  .+ -.....+..|
T Consensus        93 Dl~~gs---~l~rirf----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h----~~Lp~d~d~dln~sas~~~f  161 (405)
T KOG1273|consen   93 DLLKGS---PLKRIRF----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH----SVLPKDDDGDLNSSASHGVF  161 (405)
T ss_pred             eccCCC---ceeEEEc----cCccceeeeccccCCeEEEEEecCCcEEEEecCCce----eeccCCCccccccccccccc
Confidence            999884   4444442    578999999997777777766666666666665432    11111  11 1112233468


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee--eec
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH--AFG  458 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~--~~~  458 (540)
                      .+.|+++++|...|.+.++|..+.+++..+...  ..+..+.++-.+   .+++..+.|..|+.|+++.-.....  ...
T Consensus       162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g---~~liiNtsDRvIR~ye~~di~~~~r~~e~e  238 (405)
T KOG1273|consen  162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG---RFLIINTSDRVIRTYEISDIDDEGRDGEVE  238 (405)
T ss_pred             cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC---cEEEEecCCceEEEEehhhhcccCccCCcC
Confidence            899999999999999999999999887765544  355566666655   7899999999999999873211100  000


Q ss_pred             cccccC--ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCCCCcccccccccc-cceeEEEEcCCCCEEEEEEcCCc
Q 009203          459 WKQESS--ESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYSANKPSQSIRAHQ-KRVFKAVWHYSHPLLISISSDLN  534 (540)
Q Consensus       459 ~~~~~~--~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~h~-~~i~~l~~s~~~~~l~s~~~dg~  534 (540)
                      ....+.  -....-.+++||.+|.|++.|+. -..++||....  +.++..+.|.. .....+.|+|-...+++- ..|.
T Consensus       239 ~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~--GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~  315 (405)
T KOG1273|consen  239 PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI--GSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGV  315 (405)
T ss_pred             hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC--cceeeeecCCchhheeecccccceeeeeec-cCCc
Confidence            000000  01123457899999999988774 46899999998  78899998877 467889999999888888 7899


Q ss_pred             EEEEe
Q 009203          535 IGLHK  539 (540)
Q Consensus       535 v~iw~  539 (540)
                      |+||.
T Consensus       316 v~iw~  320 (405)
T KOG1273|consen  316 VYIWA  320 (405)
T ss_pred             eEEEE
Confidence            99996

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=8.2e-25  Score=207.53  Aligned_cols=254  Identities=20%  Similarity=0.258  Sum_probs=203.7

Q ss_pred             eEEecCCCCeEEEeccc-------hhcccccCceEE-EEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCC
Q 009203          200 LVRTSASPATIHCHTSN-------HVSSLHKRKLRS-LSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP  271 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-------~~~~~h~~~V~~-l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  271 (540)
                      ++.+++.|+++++|...       +.+.+|.+-|.+ ++|.+-.+-.|++|+.|.+|.+|.........++        .
T Consensus        27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L--------k   98 (745)
T KOG0301|consen   27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL--------K   98 (745)
T ss_pred             EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh--------h
Confidence            67888999999999652       557889999988 9988633556999999999999999998887777        6


Q ss_pred             CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203          272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV  351 (540)
Q Consensus       272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  351 (540)
                      ||+..|.++....++. +++|    +.|.++++|.....     ...+.+   |...|+++++.| ++ .++||+.|.+|
T Consensus        99 gH~snVC~ls~~~~~~-~iSg----SWD~TakvW~~~~l-----~~~l~g---H~asVWAv~~l~-e~-~~vTgsaDKtI  163 (745)
T KOG0301|consen   99 GHKSNVCSLSIGEDGT-LISG----SWDSTAKVWRIGEL-----VYSLQG---HTASVWAVASLP-EN-TYVTGSADKTI  163 (745)
T ss_pred             ccccceeeeecCCcCc-eEec----ccccceEEecchhh-----hcccCC---cchheeeeeecC-CC-cEEeccCccee
Confidence            9999999999888877 8998    99999999987643     444554   788999999998 66 89999999999


Q ss_pred             EEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee-eeccCccEEEEeecCCCCCc
Q 009203          352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF-KHQIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  430 (540)
                      ++|.-.+.     .+++  .+|.+.|+++++-++ ..+++++.||.|++|++. |.++. .+.+...+.++...+++   
T Consensus       164 klWk~~~~-----l~tf--~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~-ge~l~~~~ghtn~vYsis~~~~~---  231 (745)
T KOG0301|consen  164 KLWKGGTL-----LKTF--SGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD-GEVLLEMHGHTNFVYSISMALSD---  231 (745)
T ss_pred             eeccCCch-----hhhh--ccchhheeeeEEecC-CCeEeecCCceEEEEecc-CceeeeeeccceEEEEEEecCCC---
Confidence            99987442     3444  569999999999875 457899999999999995 55544 46677888888855444   


Q ss_pred             eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ..+++++.|++++||+.......+.         --...|+++.+-++|. |++|++||.||||..+.
T Consensus       232 ~~Ivs~gEDrtlriW~~~e~~q~I~---------lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  232 GLIVSTGEDRTLRIWKKDECVQVIT---------LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CeEEEecCCceEEEeecCceEEEEe---------cCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            5899999999999999883222221         1123688888887876 66777899999998873

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=6.5e-25  Score=206.27  Aligned_cols=291  Identities=21%  Similarity=0.273  Sum_probs=206.0

Q ss_pred             EEEec--CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203          229 LSLNP--VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN  306 (540)
Q Consensus       229 l~~sp--d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd  306 (540)
                      ..|++  ...++|+.+..||.|.++|.......  +....-.....|...|..+.|-|....|+++    +.|.++++||
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr--~ee~~lk~~~aH~nAifDl~wapge~~lVsa----sGDsT~r~Wd  128 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR--LEERQLKKPLAHKNAIFDLKWAPGESLLVSA----SGDSTIRPWD  128 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcc--hhhhhhcccccccceeEeeccCCCceeEEEc----cCCceeeeee
Confidence            45543  24678999999999999998754321  1000001115799999999999966789999    9999999999


Q ss_pred             cCCCCCceeEEe--ecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC--c------------c---cc--
Q 009203          307 LNKTKGRACVTF--LDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED--S------------W---KP--  365 (540)
Q Consensus       307 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~------------~---~~--  365 (540)
                      +.+.   .+...  +-   +|.+.|.+++|.|.+...|++|+.||.|.|||++-...  .            .   ..  
T Consensus       129 vk~s---~l~G~~~~~---GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp  202 (720)
T KOG0321|consen  129 VKTS---RLVGGRLNL---GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP  202 (720)
T ss_pred             eccc---eeecceeec---ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence            9976   22322  33   37888999999999999999999999999999975431  0            0   00  


Q ss_pred             ---ceeecccCCcceeE---EEeccCCCEEEEEeC-CCeEEEEECCCCCeeee------ec---c---CccEEEEeecCC
Q 009203          366 ---KALHRNLHSSAVMG---VAGMQQKQIVLSAGA-DKRIIGFDAGVGRADFK------HQ---I---ESKCMSVLPNPC  426 (540)
Q Consensus       366 ---~~~~~~~~~~~v~~---l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~------~~---~---~~~~~~~~~~~~  426 (540)
                         ..-....+...|.+   +.+..|...|++++. |+.|++||++.....+.      ..   .   .....++..+..
T Consensus       203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence               00011224444444   555568889999888 99999999998655322      11   1   234456666655


Q ss_pred             CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcccc--CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccc
Q 009203          427 DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQS--ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPS  504 (540)
Q Consensus       427 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~  504 (540)
                      +   .+|++.+.|+.|++||+.+......     ..+.++..  .-..-..+||+.+|++|+.|...++|.+.+. ....
T Consensus       283 G---t~L~AsCtD~sIy~ynm~s~s~sP~-----~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~-e~~~  353 (720)
T KOG0321|consen  283 G---TYLFASCTDNSIYFYNMRSLSISPV-----AEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP-EAPP  353 (720)
T ss_pred             C---CeEEEEecCCcEEEEeccccCcCch-----hhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc-cCCh
Confidence            5   4666666699999999987553211     12222221  1122356899999999999999999999986 5667


Q ss_pred             ccccccccceeEEEEcCCC-CEEEEEEcCCcEEEEeC
Q 009203          505 QSIRAHQKRVFKAVWHYSH-PLLISISSDLNIGLHKI  540 (540)
Q Consensus       505 ~~~~~h~~~i~~l~~s~~~-~~l~s~~~dg~v~iw~l  540 (540)
                      ..+.+|.-.|++++|.|.. .-++++++|-.++||+|
T Consensus       354 ~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  354 ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             hhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence            7888999999999998754 34777899999999986

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.7e-25  Score=214.57  Aligned_cols=288  Identities=17%  Similarity=0.230  Sum_probs=213.7

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecCCCCCeE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~~d~~i  302 (540)
                      ...++|+.+++ -..++.++. ..++||.+................ ..-...+..++|+. +.++||++    +.+|.|
T Consensus        40 ~~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~k-qn~~~S~~DVkW~~~~~NlIAT~----s~nG~i  112 (839)
T KOG0269|consen   40 AKANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTK-QNKFYSAADVKWGQLYSNLIATC----STNGVI  112 (839)
T ss_pred             cccceEeecCC-cceeEEecc-cceeeEeeCcccCCcceeeecccc-cceeeehhhcccccchhhhheee----cCCCcE
Confidence            45677788886 445555553 467888776544322222111100 11112356788875 46799999    999999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      .+||+........+..+..   |...++++.|++....+|++|+.||+|++||++....   ...+  .+....|.++.|
T Consensus       113 ~vWdlnk~~rnk~l~~f~E---H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---~~t~--~~nSESiRDV~f  184 (839)
T KOG0269|consen  113 SVWDLNKSIRNKLLTVFNE---HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---KSTF--RSNSESIRDVKF  184 (839)
T ss_pred             EEEecCccccchhhhHhhh---hccceeeeeeccCCccEEEecCCCceEEEEeeecccc---cccc--cccchhhhceee
Confidence            9999986322234445554   6778999999998999999999999999999998774   2222  347788999999


Q ss_pred             cc-CCCEEEEEeCCCeEEEEECCCCCe-e-eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc-eeeeec
Q 009203          383 MQ-QKQIVLSAGADKRIIGFDAGVGRA-D-FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT-EIHAFG  458 (540)
Q Consensus       383 s~-~~~~l~~~~~dg~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~  458 (540)
                      +| .+..++++...|.+++||++.... . ....+.+.+.++.|+|+.   .+||+|+.|+.|+|||+.+... ....+ 
T Consensus       185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr---~~lATGGRDK~vkiWd~t~~~~~~~~tI-  260 (839)
T KOG0269|consen  185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR---EWLATGGRDKMVKIWDMTDSRAKPKHTI-  260 (839)
T ss_pred             ccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC---ceeeecCCCccEEEEeccCCCccceeEE-
Confidence            98 578899999999999999997544 2 234567889999999966   6999999999999999986543 22221 


Q ss_pred             cccccCccccCeEEEEEcCCCCE-EEEEe--CCCcEEEEeccCCCCcccccccccccceeEEEEcC-CCCEEEEEEcCCc
Q 009203          459 WKQESSESQSALINQSWSPDGLY-ITSGS--ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY-SHPLLISISSDLN  534 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~-l~sg~--~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~-~~~~l~s~~~dg~  534 (540)
                            ....+|.+|.|-|...+ ||+++  .|-.|+|||++.+ .-+..++..|...++.++|.. |-..|.+++.||+
T Consensus       261 ------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP-YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t  333 (839)
T KOG0269|consen  261 ------NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP-YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT  333 (839)
T ss_pred             ------eecceeeeeeeccCccchhhhhhccccceEEEEeeccc-cccceeeeccCccccceeccCCCceeeEeecCccH
Confidence                  12458999999998765 56554  5789999999975 668889999999999999965 4458999999998


Q ss_pred             EEE
Q 009203          535 IGL  537 (540)
Q Consensus       535 v~i  537 (540)
                      |..
T Consensus       334 v~q  336 (839)
T KOG0269|consen  334 VLQ  336 (839)
T ss_pred             HHH
Confidence            753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1.4e-23  Score=199.71  Aligned_cols=271  Identities=11%  Similarity=0.072  Sum_probs=190.8

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeE-EEEeecCCCCCeEEEEecCCCCCcee
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSL-FSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      .++++++.|+.|++||+.+++....+.        ++ ..+.+++|+|++..+ +++    +.++.|++||..++   ..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--------~~-~~~~~l~~~~dg~~l~~~~----~~~~~v~~~d~~~~---~~   65 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFP--------VG-QRPRGITLSKDGKLLYVCA----SDSDTIQVIDLATG---EV   65 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEE--------CC-CCCCceEECCCCCEEEEEE----CCCCeEEEEECCCC---cE
Confidence            578899999999999998877655542        22 236789999999976 455    78899999999876   33


Q ss_pred             EEeecCCCCcccceeEEEEeCCCCCEEE-EEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203          316 VTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA  394 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  394 (540)
                      ...+..   + ..+..++|+| +++.++ +++.++.|++||+.+...+   ..+   .+...+.+++|+|+|.++++++.
T Consensus        66 ~~~~~~---~-~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~---~~~---~~~~~~~~~~~~~dg~~l~~~~~  134 (300)
T TIGR03866        66 IGTLPS---G-PDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVL---AEI---PVGVEPEGMAVSPDGKIVVNTSE  134 (300)
T ss_pred             EEeccC---C-CCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEE---eEe---eCCCCcceEEECCCCCEEEEEec
Confidence            333332   1 2256789999 777665 4556899999999886531   111   12344688999999999999887


Q ss_pred             CC-eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEE-EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE
Q 009203          395 DK-RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMV-QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN  472 (540)
Q Consensus       395 dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~  472 (540)
                      ++ .+.+||..+++.............+.|+|++   .++ +++..++.|++||+.+++.....................
T Consensus       135 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (300)
T TIGR03866       135 TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADG---KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVG  211 (300)
T ss_pred             CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCC---CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccc
Confidence            65 5677899887765544444455678888887   455 555679999999999876432211000000001123457


Q ss_pred             EEEcCCCCEEEE-EeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE-EcCCcEEEEeC
Q 009203          473 QSWSPDGLYITS-GSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI-SSDLNIGLHKI  540 (540)
Q Consensus       473 ~~~sp~g~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~-~~dg~v~iw~l  540 (540)
                      ++|+|+|+++++ .+.++.|.+||+.+  ++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+
T Consensus       212 i~~s~dg~~~~~~~~~~~~i~v~d~~~--~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~  278 (300)
T TIGR03866       212 IKLTKDGKTAFVALGPANRVAVVDAKT--YEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV  278 (300)
T ss_pred             eEECCCCCEEEEEcCCCCeEEEEECCC--CcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            899999998654 45567899999986  55544433 44579999999999998876 56899999985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.1e-24  Score=203.23  Aligned_cols=288  Identities=18%  Similarity=0.224  Sum_probs=219.3

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC--eEEEEee
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN--SLFSAHT  294 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~--~l~s~~~  294 (540)
                      .++.||++.|.||...| .|.+|++|+.||+|+||.+.++.++.++..         .+.|.|++|+|.++  .||++  
T Consensus       394 lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~~---------d~~I~~vaw~P~~~~~vLAvA--  461 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQF---------DSEIRSVAWNPLSDLCVLAVA--  461 (733)
T ss_pred             eeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEee---------cceeEEEEecCCCCceeEEEE--
Confidence            56899999999999999 699999999999999999999999888743         34699999999776  45554  


Q ss_pred             cCCCCCeEEEEecCCCC---------------------------------Cce-eEEeecCCCCcccceeEEEEeCCCCC
Q 009203          295 ADSGDSQISVLNLNKTK---------------------------------GRA-CVTFLDDKPHVKGIINSIIFLPWENP  340 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~---------------------------------~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~  340 (540)
                         ....+.|.+..-|.                                 ... -+...-   .|...|..+.|+. .|+
T Consensus       462 ---~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I---~~~k~i~~vtWHr-kGD  534 (733)
T KOG0650|consen  462 ---VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI---KHPKSIRQVTWHR-KGD  534 (733)
T ss_pred             ---ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE---ecCCccceeeeec-CCc
Confidence               22223333322110                                 000 000100   2456799999999 999


Q ss_pred             EEEEEecC---CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCc
Q 009203          341 CFATGGSD---HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IES  416 (540)
Q Consensus       341 ~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~  416 (540)
                      +|++...+   ..|.|+++......   ..+  ....+.|.++.|+|...+|++++. ..|++||+.....+.... ...
T Consensus       535 YlatV~~~~~~~~VliHQLSK~~sQ---~PF--~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k  608 (733)
T KOG0650|consen  535 YLATVMPDSGNKSVLIHQLSKRKSQ---SPF--RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK  608 (733)
T ss_pred             eEEEeccCCCcceEEEEeccccccc---Cch--hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe
Confidence            99987654   46889999876531   112  225577999999999888888876 589999998766555433 334


Q ss_pred             cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203          417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI  496 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~  496 (540)
                      .+..++.+|.+   .-|+.|+.|+.+..||+.-...+..      .+.-|...+++|+|++.-.++++|+.||++.||.-
T Consensus       609 wiS~msihp~G---Dnli~gs~d~k~~WfDldlsskPyk------~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  609 WISSMSIHPNG---DNLILGSYDKKMCWFDLDLSSKPYK------TLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             eeeeeeecCCC---CeEEEecCCCeeEEEEcccCcchhH------HhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence            56678888877   4688999999999999987655443      55678999999999999999999999999999853


Q ss_pred             cC-------CCCcccccccccccc----eeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          497 RY-------SANKPSQSIRAHQKR----VFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       497 ~~-------~~~~~~~~~~~h~~~----i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      .-       +-..++..+.+|...    |..+.|+|...+|+++|.||+|++|
T Consensus       680 ~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  680 MVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            31       213467788888765    8899999999999999999999998

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.8e-24  Score=186.55  Aligned_cols=239  Identities=15%  Similarity=0.141  Sum_probs=192.2

Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV  352 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  352 (540)
                      -.+.|+++.|+|.+..|+++    ++||.+++||+...   .....+    .|..++.+++|.+  ...+++|+.||.|+
T Consensus        12 P~d~IS~v~f~~~~~~LLvs----sWDgslrlYdv~~~---~l~~~~----~~~~plL~c~F~d--~~~~~~G~~dg~vr   78 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVS----SWDGSLRLYDVPAN---SLKLKF----KHGAPLLDCAFAD--ESTIVTGGLDGQVR   78 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEE----eccCcEEEEeccch---hhhhhe----ecCCceeeeeccC--CceEEEeccCceEE
Confidence            35679999999998888888    99999999999865   122222    3678899999985  56799999999999


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceE
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (540)
                      .+|+.++..    ..+  ..|...|.|+.+++....+++|+.|++|++||.+.............+.++....     ..
T Consensus        79 ~~Dln~~~~----~~i--gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g-----~~  147 (323)
T KOG1036|consen   79 RYDLNTGNE----DQI--GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG-----NR  147 (323)
T ss_pred             EEEecCCcc----eee--ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccC-----CE
Confidence            999999873    333  4499999999999988999999999999999999866666666666777777665     47


Q ss_pred             EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC--Cccccccccc
Q 009203          433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA--NKPSQSIRAH  510 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~h  510 (540)
                      |++|+.+..|.+||+++.......     ....-...+.++++-|++.-+++++-||.|.+=.++..+  ...-..|+.|
T Consensus       148 LvVg~~~r~v~iyDLRn~~~~~q~-----reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH  222 (323)
T KOG1036|consen  148 LVVGTSDRKVLIYDLRNLDEPFQR-----RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH  222 (323)
T ss_pred             EEEeecCceEEEEEcccccchhhh-----ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence            889999999999999987754421     223345578999999998889999999999987776521  1233455556


Q ss_pred             cc---------ceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          511 QK---------RVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       511 ~~---------~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ..         +|++|+|+|--..|+|||.||.|.+||+
T Consensus       223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~  261 (323)
T KOG1036|consen  223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL  261 (323)
T ss_pred             ecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence            43         8999999999999999999999999985

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.2e-23  Score=199.37  Aligned_cols=279  Identities=20%  Similarity=0.220  Sum_probs=218.0

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      .+|++|||+.+ .+.||.+-.||.|.||++...=.......      .+....|.+++|++ +..|++.    +.+|.|.
T Consensus        26 s~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~------g~~drsIE~L~W~e-~~RLFS~----g~sg~i~   93 (691)
T KOG2048|consen   26 SEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIH------GPEDRSIESLAWAE-GGRLFSS----GLSGSIT   93 (691)
T ss_pred             cceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEe------cCCCCceeeEEEcc-CCeEEee----cCCceEE
Confidence            57999999995 77899999999999999987543333322      13346799999995 5567777    8999999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      -||+.+.+   ....++.   ..+.|++++.+| .+..++.|+.||.+..++...+...+.. .+  ....+.|.++.|+
T Consensus        94 EwDl~~lk---~~~~~d~---~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r-~l--~rq~sRvLslsw~  163 (691)
T KOG2048|consen   94 EWDLHTLK---QKYNIDS---NGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKR-SL--MRQKSRVLSLSWN  163 (691)
T ss_pred             EEecccCc---eeEEecC---CCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEe-ec--ccccceEEEEEec
Confidence            99999873   3444433   357899999999 8999999999998888888776642211 11  2256899999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeeee-----cc----CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          384 QQKQIVLSAGADKRIIGFDAGVGRADFKH-----QI----ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      |++..++.|+.||.|++||...+..+..+     ..    ..-+.++.+-.++    .|++|...|+|++||...+....
T Consensus       164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~----tI~sgDS~G~V~FWd~~~gTLiq  239 (691)
T KOG2048|consen  164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS----TIASGDSAGTVTFWDSIFGTLIQ  239 (691)
T ss_pred             CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC----cEEEecCCceEEEEcccCcchhh
Confidence            99999999999999999999998876621     11    2234466666554    89999999999999999877533


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc--ccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK--PSQSIRAHQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                             ....|...|.+++..+++.++++++.|+.|.-|.......+  .......|...|.+++..++  .|++||.|
T Consensus       240 -------S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d  310 (691)
T KOG2048|consen  240 -------SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRD  310 (691)
T ss_pred             -------hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEeccee
Confidence                   55678999999999999999999999999999988763221  23334568888999999877  89999999


Q ss_pred             CcEEE
Q 009203          533 LNIGL  537 (540)
Q Consensus       533 g~v~i  537 (540)
                      ..+.+
T Consensus       311 ~~l~i  315 (691)
T KOG2048|consen  311 FTLAI  315 (691)
T ss_pred             eEEEE
Confidence            98876

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.1e-24  Score=194.01  Aligned_cols=268  Identities=13%  Similarity=0.112  Sum_probs=199.5

Q ss_pred             EEeCC-ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEee
Q 009203          241 TSALD-GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFL  319 (540)
Q Consensus       241 tg~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~  319 (540)
                      +++.| .++.+||+.++....++.......  +|.    .-+.  .+.+++++.   .....|.+|.+.....  ..+.+
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~--~~s----l~~l--~~~yllsaq---~~rp~l~vw~i~k~~~--~~q~~   78 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQ--AAS----LTAL--NNEYLLSAQ---LKRPLLHVWEILKKDQ--VVQYI   78 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCccccc--chh----hhhh--chhheeeec---ccCccccccccCchhh--hhhhc
Confidence            33444 459999999998877776542211  111    1111  235677661   4556899999875421  11121


Q ss_pred             cCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEE
Q 009203          320 DDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRII  399 (540)
Q Consensus       320 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~  399 (540)
                      .    -.++|.+++-+| +|.+++.|+..|.|++|.+.+|..   +..+  ..|-..|+|+.|+-||.+|++|+.||.|.
T Consensus        79 v----~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~L---L~v~--~aHYQ~ITcL~fs~dgs~iiTgskDg~V~  148 (476)
T KOG0646|consen   79 V----LPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGIL---LNVL--SAHYQSITCLKFSDDGSHIITGSKDGAVL  148 (476)
T ss_pred             c----cccceeeeecCC-CceEEEeecccCcEEEEEeccccH---HHHH--HhhccceeEEEEeCCCcEEEecCCCccEE
Confidence            1    257899999999 999999998999999999999986   3333  55999999999999999999999999999


Q ss_pred             EEECCC---------CCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC
Q 009203          400 GFDAGV---------GRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA  469 (540)
Q Consensus       400 iwd~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  469 (540)
                      +|++..         -+++.. ..+.-.+..+...+.+.+ .++++.+.|.++++||+..+.......        ....
T Consensus       149 vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~-~rl~TaS~D~t~k~wdlS~g~LLlti~--------fp~s  219 (476)
T KOG0646|consen  149 VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTN-ARLYTASEDRTIKLWDLSLGVLLLTIT--------FPSS  219 (476)
T ss_pred             EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCcc-ceEEEecCCceEEEEEeccceeeEEEe--------cCCc
Confidence            998742         122222 223345556655554433 589999999999999999887655432        2457


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeccCCC--------------Cccccccccccc--ceeEEEEcCCCCEEEEEEcCC
Q 009203          470 LINQSWSPDGLYITSGSADPVIHLFDIRYSA--------------NKPSQSIRAHQK--RVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       470 v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~--------------~~~~~~~~~h~~--~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      +.+++.+|-++.+++|+.+|.|.+.++....              +..+..+.+|.+  .|+|++.+-||.+|++|+.||
T Consensus       220 i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg  299 (476)
T KOG0646|consen  220 IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG  299 (476)
T ss_pred             ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC
Confidence            9999999999999999999999999887532              123445678888  999999999999999999999


Q ss_pred             cEEEEeC
Q 009203          534 NIGLHKI  540 (540)
Q Consensus       534 ~v~iw~l  540 (540)
                      .|+|||+
T Consensus       300 ~VcvWdi  306 (476)
T KOG0646|consen  300 KVCVWDI  306 (476)
T ss_pred             CEEEEec
Confidence            9999996

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=3.8e-24  Score=193.60  Aligned_cols=299  Identities=16%  Similarity=0.203  Sum_probs=214.5

Q ss_pred             hhcccccCceEEEEEecCCC-cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEee
Q 009203          217 HVSSLHKRKLRSLSLNPVNE-QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHT  294 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~-~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~  294 (540)
                      .+.+-|.+.|++++|+|... +++|+|..-|.|-+||+.+.+....-..    ....|..+|.++.|+|.. ..+++.  
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~----~f~~hs~~Vs~l~F~P~n~s~i~ss--  253 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY----LFTPHSGPVSGLKFSPANTSQIYSS--  253 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE----EeccCCccccceEecCCChhheeee--
Confidence            45678899999999999645 6899999999999999963322111111    115899999999999954 477777  


Q ss_pred             cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203          295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                        +.||+|++-|++.+........ .   .....+.++.|+. +...++.+..=|...+||++++...+...    ..|.
T Consensus       254 --SyDGtiR~~D~~~~i~e~v~s~-~---~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~----~lh~  322 (498)
T KOG4328|consen  254 --SYDGTIRLQDFEGNISEEVLSL-D---TDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENL----RLHK  322 (498)
T ss_pred             --ccCceeeeeeecchhhHHHhhc-C---ccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhh----hhhh
Confidence              9999999999997633222222 1   1234577888888 55566666666799999999887432222    3377


Q ss_pred             cceeEEEeccC-CCEEEEEeCCCeEEEEECCCC--Ce---eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          375 SAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVG--RA---DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       375 ~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      ..|.+++++|. ..+|++++.|++++|||++.-  +.   +....+...+.+..|+|.+.   .|++.+.|..|+|||..
T Consensus       323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g---tl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG---TLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC---ceEeeccCCceEEeecc
Confidence            89999999994 567899999999999999862  22   44566677889999999984   49999999999999995


Q ss_pred             ---CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc-ceeE-EEEcCCC
Q 009203          449 ---LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK-RVFK-AVWHYSH  523 (540)
Q Consensus       449 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~i~~-l~~s~~~  523 (540)
                         ..-.+...+.+......|- ......|.|+..++++|..-..|-|||-..  ++.+..+..... .|.+ ..|+|-+
T Consensus       400 ~~sa~~~p~~~I~Hn~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~--~q~v~el~~P~~~tI~~vn~~HP~~  476 (498)
T KOG4328|consen  400 CISAKDEPLGTIPHNNRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNG--GQMVCELHDPESSTIPSVNEFHPMR  476 (498)
T ss_pred             cccccCCccceeeccCcccccc-cchhheeCCCccEEEEeccCcceeEEcCCC--CEEeeeccCccccccccceeecccc
Confidence               2222333322221111111 234568999999999999999999999886  555555543322 4555 4799998


Q ss_pred             CEEEEE-EcCCcEEEE
Q 009203          524 PLLISI-SSDLNIGLH  538 (540)
Q Consensus       524 ~~l~s~-~~dg~v~iw  538 (540)
                      ..+++| +..|.|+||
T Consensus       477 ~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  477 DTLAAGGNSSGKIYVF  492 (498)
T ss_pred             cceeccCCccceEEEE
Confidence            855554 566888888

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.2e-22  Score=193.30  Aligned_cols=281  Identities=12%  Similarity=0.105  Sum_probs=198.3

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcE-EEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQL-FVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~-l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      .+.+++.|+.+.+|+..     ..+.+|. .+.+++|+|+ +.. +++++.++.|++||..+++....+.        .+
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------~~   72 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIGTLP--------SG   72 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEEecc--------CC
Confidence            35566788999999754     3345554 4778999997 655 4677889999999998876544331        22


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-cEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-AVV  352 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-~i~  352 (540)
                       ..+..++|+|+++.++++   +..++.|++||+.+.   ..+..+..    ...+.+++|+| ++.++++++.++ .+.
T Consensus        73 -~~~~~~~~~~~g~~l~~~---~~~~~~l~~~d~~~~---~~~~~~~~----~~~~~~~~~~~-dg~~l~~~~~~~~~~~  140 (300)
T TIGR03866        73 -PDPELFALHPNGKILYIA---NEDDNLVTVIDIETR---KVLAEIPV----GVEPEGMAVSP-DGKIVVNTSETTNMAH  140 (300)
T ss_pred             -CCccEEEECCCCCEEEEE---cCCCCeEEEEECCCC---eEEeEeeC----CCCcceEEECC-CCCEEEEEecCCCeEE
Confidence             224678999999977665   156899999999875   33444432    23467899999 999999888765 467


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEE-eCCCeEEEEECCCCCeeeeecc--------CccEEEEee
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQI--------ESKCMSVLP  423 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~  423 (540)
                      +||..++...   ....   ....+.+++|+|+|++|+++ ..++.|++||+.+++.+.....        ......+.+
T Consensus       141 ~~d~~~~~~~---~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  214 (300)
T TIGR03866       141 FIDTKTYEIV---DNVL---VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL  214 (300)
T ss_pred             EEeCCCCeEE---EEEE---cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE
Confidence            7898876531   1111   22346789999999988655 4589999999998876543321        112346778


Q ss_pred             cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCc
Q 009203          424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANK  502 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~  502 (540)
                      +|++.  ..+++...++.+.+||+.+++.....        .+...+.+++|+|+|++|+++ +.+|.|.+||+.+  ++
T Consensus       215 s~dg~--~~~~~~~~~~~i~v~d~~~~~~~~~~--------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~--~~  282 (300)
T TIGR03866       215 TKDGK--TAFVALGPANRVAVVDAKTYEVLDYL--------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA--LK  282 (300)
T ss_pred             CCCCC--EEEEEcCCCCeEEEEECCCCcEEEEE--------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC--Cc
Confidence            88773  22344456778999999876643221        123468899999999999876 4689999999998  77


Q ss_pred             ccccccccccceeEEEEcC
Q 009203          503 PSQSIRAHQKRVFKAVWHY  521 (540)
Q Consensus       503 ~~~~~~~h~~~i~~l~~s~  521 (540)
                      ++..+... ...++++++|
T Consensus       283 ~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       283 VIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEEEEEcc-cccceeEeCC
Confidence            77777754 4568888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.2e-23  Score=177.93  Aligned_cols=307  Identities=14%  Similarity=0.137  Sum_probs=217.8

Q ss_pred             eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccch-hcccc------
Q 009203          150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNH-VSSLH------  222 (540)
Q Consensus       150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~~-~~~~h------  222 (540)
                      .+.+|...|+++++.....                               .+++.+.|++|++|+..- ..+.|      
T Consensus        81 ~LKgH~~~vt~~~FsSdGK-------------------------------~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n  129 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGK-------------------------------KLATISGDRSIRLWDVRDFENKEHRCIRQN  129 (420)
T ss_pred             hhhccCCceeeeEEcCCCc-------------------------------eeEEEeCCceEEEEecchhhhhhhhHhhcc
Confidence            4568888898888877643                               577888999999997651 12222      


Q ss_pred             --cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC---cceeec-ccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          223 --KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS---GASLLS-TTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       223 --~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~---~~~~~~-~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                        -+.-+.+.|+||...++++.-...++++|.+...+.   ...+.. ........|.-.|..+-...++.+|+++    
T Consensus       130 ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa----  205 (420)
T KOG2096|consen  130 VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA----  205 (420)
T ss_pred             ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe----
Confidence              245789999999777777777777899998754332   111111 1011224567777778888888999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC---CCCCccccceeecccC
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER---DAEDSWKPKALHRNLH  373 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~  373 (540)
                      +.|..|.+|++. |   +.+..+..   ....-+..+.+| +|+++++++.--.|++|.+-   .|......+.+...+|
T Consensus       206 s~dt~i~lw~lk-G---q~L~~idt---nq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH  277 (420)
T KOG2096|consen  206 SLDTKICLWDLK-G---QLLQSIDT---NQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH  277 (420)
T ss_pred             cCCCcEEEEecC-C---ceeeeecc---ccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence            999999999999 5   34555443   223456788999 99999999998999999874   3332222345566889


Q ss_pred             CcceeEEEeccCCCEEEEEeCCCeEEEEECCCC----C---e-----eeeeccCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG----R---A-----DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ  441 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~----~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  441 (540)
                      ...|..++|+++...+++.+.||++++||++-.    +   .     ...+..++....+..+|.+   ..|+ .+....
T Consensus       278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g---~~lA-~s~gs~  353 (420)
T KOG2096|consen  278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG---DSLA-VSFGSD  353 (420)
T ss_pred             hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC---cEEE-eecCCc
Confidence            999999999999999999999999999998531    1   1     1123345566688889987   3444 445568


Q ss_pred             EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          442 LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       442 v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      +++|..++++..-.      .-..|...|.+++|+++|+++++++ |..++++.-..+-...+..+.+|
T Consensus       354 l~~~~se~g~~~~~------~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg~~~~V~~~~~~  415 (420)
T KOG2096|consen  354 LKVFASEDGKDYPE------LEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPGWHSRVVKLNRE  415 (420)
T ss_pred             eEEEEcccCccchh------HHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCchhhHHHHhhcc
Confidence            99999988664221      2246889999999999999999996 67788876333223344444444

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=4.5e-24  Score=202.86  Aligned_cols=248  Identities=18%  Similarity=0.227  Sum_probs=200.0

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec---CCCeEEEEeecCCC
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP---QGNSLFSAHTADSG  298 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~---~~~~l~s~~~~~~~  298 (540)
                      -..+|.+++.+|+ |++||+|..-|+++||++...+....+        ..|...|.|+.|+.   ..++||++    +.
T Consensus       458 ~r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~~~~~~--------eAHesEilcLeyS~p~~~~kLLASa----sr  524 (1080)
T KOG1408|consen  458 SRFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELEYTCFM--------EAHESEILCLEYSFPVLTNKLLASA----SR  524 (1080)
T ss_pred             cccceEEEEECCC-cceecccCccCceEEEEehhhhhhhhe--------ecccceeEEEeecCchhhhHhhhhc----cC
Confidence            3458999999995 999999999999999999887655444        68999999999985   34689999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC--CEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN--PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      |..|.|||+...  ...++++.+   |...|+++.|.- ++  ..+++++.|..|.+--.+.......+..-........
T Consensus       525 dRlIHV~Dv~rn--y~l~qtld~---HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT  598 (1080)
T KOG1408|consen  525 DRLIHVYDVKRN--YDLVQTLDG---HSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT  598 (1080)
T ss_pred             CceEEEEecccc--cchhhhhcc---cccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence            999999999755  345556664   788899999987 55  6789999998875433321110000111111113456


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec----cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ----IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      +++++..|..+++++++.|..|+|||+.+++....+.    .++..+.+..+|.+   .|+++.+.|.++.+||..++++
T Consensus       599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg---iY~atScsdktl~~~Df~sgEc  675 (1080)
T KOG1408|consen  599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG---IYLATSCSDKTLCFVDFVSGEC  675 (1080)
T ss_pred             EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc---cEEEEeecCCceEEEEeccchh
Confidence            8999999999999999999999999999999876543    45788899999988   7999999999999999999998


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ...       ..+|...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus       676 vA~-------m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  676 VAQ-------MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hhh-------hcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            664       457999999999999999999999999999999874

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.93  E-value=2.6e-23  Score=180.58  Aligned_cols=306  Identities=15%  Similarity=0.156  Sum_probs=214.2

Q ss_pred             hhcccccCceEEEEEec----CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC----CCe
Q 009203          217 HVSSLHKRKLRSLSLNP----VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ----GNS  288 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~sp----d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~  288 (540)
                      ++..+|+.+|..++|++    +....+|+.+.+ .+.||.......+..+..-.+   +.|......++|+-+    ..+
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D---~d~~Esfytcsw~yd~~~~~p~  107 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYAD---EDHDESFYTCSWSYDSNTGNPF  107 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccC---CCCCcceEEEEEEecCCCCCee
Confidence            45678999999999985    224567777654 799998876553333332222   357778888999764    337


Q ss_pred             EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee
Q 009203          289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL  368 (540)
Q Consensus       289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  368 (540)
                      +|++    +.-|.|+|.|+.++   .+...+.+   |...|+.+.|+|.+.+++++++.|.+|++|++++..++   ..+
T Consensus       108 la~~----G~~GvIrVid~~~~---~~~~~~~g---hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv---~Vf  174 (385)
T KOG1034|consen  108 LAAG----GYLGVIRVIDVVSG---QCSKNYRG---HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV---AVF  174 (385)
T ss_pred             EEee----cceeEEEEEecchh---hhccceec---cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE---EEe
Confidence            8888    89999999999986   45555665   67889999999988899999999999999999999873   222


Q ss_pred             e-cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee------eccCc------------c---EEEEeecCC
Q 009203          369 H-RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK------HQIES------------K---CMSVLPNPC  426 (540)
Q Consensus       369 ~-~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~------------~---~~~~~~~~~  426 (540)
                      . ..+|.+.|.++.|+++|.+|++++.|.+|++|++...+....      +....            +   ...+.-++.
T Consensus       175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV  254 (385)
T KOG1034|consen  175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV  254 (385)
T ss_pred             cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence            2 267999999999999999999999999999999984322100      00000            0   000000000


Q ss_pred             ---CCCceEEEEEcCCCeEEEEECCCCcceeeee-------ccccccCccccCeEEE--EEcCCCCEEEEEeCCCcEEEE
Q 009203          427 ---DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF-------GWKQESSESQSALINQ--SWSPDGLYITSGSADPVIHLF  494 (540)
Q Consensus       427 ---~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-------~~~~~~~~~~~~v~~~--~~sp~g~~l~sg~~dg~i~iw  494 (540)
                         ..-+.++++-+-++.|..|.....+...+..       .....+.-....|+-+  +|+|-+++||.|...|.|++|
T Consensus       255 DCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw  334 (385)
T KOG1034|consen  255 DCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW  334 (385)
T ss_pred             HHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence               0112578888889999999883221111100       0011222233445544  567778999999999999999


Q ss_pred             eccCCCCcccccccc--cccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          495 DIRYSANKPSQSIRA--HQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       495 d~~~~~~~~~~~~~~--h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      |+++.+.....++..  ....|...+|+.||.+|+..++|++|.-||
T Consensus       335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            999843322333332  244799999999999999999999999997

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=9.5e-25  Score=218.83  Aligned_cols=292  Identities=15%  Similarity=0.277  Sum_probs=217.2

Q ss_pred             EEEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcc--eeecccccCCCCCCCCceeEEEecCCCe----EE
Q 009203          227 RSLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGA--SLLSTTDCLSPKHRRWPEDIAWHPQGNS----LF  290 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~h~~~V~~~~~~~~~~~----l~  290 (540)
                      -.++|+|++..++|+|.          .+.++-||.+.......  ......     .-....+.++|.+.|..    |+
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-----~s~~rF~kL~W~~~g~~~~GlIa   84 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-----QSSNRFNKLAWGSYGSHSHGLIA   84 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-----cccccceeeeecccCCCccceee
Confidence            45788887433666653          34556666654333222  111111     22345689999998776    77


Q ss_pred             EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203          291 SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       291 s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                      .|    ..||.|.+||...-........+.....|.+.|..+.|++..+++|++|+.||.|.|||+...+..   .....
T Consensus        85 GG----~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP---~~~~~  157 (1049)
T KOG0307|consen   85 GG----LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP---FTPGS  157 (1049)
T ss_pred             cc----ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC---CCCCC
Confidence            77    999999999987621112222333333578999999999977779999999999999999986642   22212


Q ss_pred             ccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCC---CeEE
Q 009203          371 NLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPG---RQLR  443 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d---g~v~  443 (540)
                      ....+.|.+++|+.. ...|++++.+|.+.|||++..+.+......   ..+..+.|+|++..  .+++++.|   -.|.
T Consensus       158 ~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT--ql~~As~dd~~Pviq  235 (1049)
T KOG0307|consen  158 QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT--QLLVASGDDSAPVIQ  235 (1049)
T ss_pred             CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce--eeeeecCCCCCceeE
Confidence            335678999999864 456788899999999999998776654433   45789999999876  34444333   3699


Q ss_pred             EEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203          444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      +||++.......      .+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++  ++.+..+....+++..+.|+|.
T Consensus       236 lWDlR~assP~k------~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t--gEvl~~~p~~~nW~fdv~w~pr  307 (1049)
T KOG0307|consen  236 LWDLRFASSPLK------ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT--GEVLGELPAQGNWCFDVQWCPR  307 (1049)
T ss_pred             eecccccCCchh------hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC--ceEeeecCCCCcceeeeeecCC
Confidence            999997665554      457899999999999966 8899999999999999998  8899999888889999999998


Q ss_pred             CC-EEEEEEcCCcEEEEeC
Q 009203          523 HP-LLISISSDLNIGLHKI  540 (540)
Q Consensus       523 ~~-~l~s~~~dg~v~iw~l  540 (540)
                      .. .++.++-||.|-|+.+
T Consensus       308 ~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  308 NPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             Ccchhhhheeccceeeeee
Confidence            86 7888999999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.3e-24  Score=206.92  Aligned_cols=244  Identities=18%  Similarity=0.253  Sum_probs=194.1

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCC---CCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCCCCC
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR---GSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDS  300 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~  300 (540)
                      .+..|.|+.-..++|||++..|.|.+||+...   +.+..+        ..|+..|+++.|++.. .+|++|    +.||
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f--------~EH~Rs~~~ldfh~tep~iliSG----SQDg  156 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF--------NEHERSANKLDFHSTEPNILISG----SQDG  156 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh--------hhhccceeeeeeccCCccEEEec----CCCc
Confidence            35567777545789999999999999999872   222222        5799999999999854 578888    9999


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                      +|++||++..+.   ..++.+   ....|..++|+|..+..|+++...|.+++||++....    .......|.++|.|+
T Consensus       157 ~vK~~DlR~~~S---~~t~~~---nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r----~~~k~~AH~GpV~c~  226 (839)
T KOG0269|consen  157 TVKCWDLRSKKS---KSTFRS---NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR----CEKKLTAHNGPVLCL  226 (839)
T ss_pred             eEEEEeeecccc---cccccc---cchhhhceeeccCCCceEEEecCCceEEEeeccCchh----HHHHhhcccCceEEE
Confidence            999999997633   333333   3567999999998999999999999999999998763    334446799999999


Q ss_pred             EeccCCCEEEEEeCCCeEEEEECCCCCe--eeeeccCccEEEEeecCCCCCceEEEEEc--CCCeEEEEECCCCcceeee
Q 009203          381 AGMQQKQIVLSAGADKRIIGFDAGVGRA--DFKHQIESKCMSVLPNPCDFNLFMVQTGT--PGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~v~i~d~~~~~~~~~~  456 (540)
                      .|+|++.+|++|+.|+.|+|||..+++.  +........+..+.|-|...  ..|++++  .|..|+|||++..-.+.. 
T Consensus       227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~--~hLAtcsmv~dtsV~VWDvrRPYIP~~-  303 (839)
T KOG0269|consen  227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS--YHLATCSMVVDTSVHVWDVRRPYIPYA-  303 (839)
T ss_pred             eecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc--chhhhhhccccceEEEEeeccccccce-
Confidence            9999999999999999999999987554  45566677888999999876  3667665  477899999986655444 


Q ss_pred             eccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccC
Q 009203          457 FGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~  498 (540)
                           .+..|...++.++|.. |-..|.+++.||.|..-.+.+
T Consensus       304 -----t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  304 -----TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             -----eeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence                 5578999999999965 445688999999887655554

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=5.1e-23  Score=193.65  Aligned_cols=316  Identities=13%  Similarity=0.167  Sum_probs=218.7

Q ss_pred             CCceEEecccccccceEEecCCCCeEEEeccch-----------hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEc
Q 009203          185 TKRKFEQKEHRELIPLVRTSASPATIHCHTSNH-----------VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQL  253 (540)
Q Consensus       185 ~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~~-----------~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~  253 (540)
                      +++......+.+.-..++.+..|+.|.+++...           -...|.+.|..+.|.| +...|++++.|.++++||+
T Consensus        51 pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdv  129 (720)
T KOG0321|consen   51 PPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDV  129 (720)
T ss_pred             CCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeee
Confidence            333334445555556788888899999987651           2468999999999999 7899999999999999999


Q ss_pred             CCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCc----e-------------e
Q 009203          254 QSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGR----A-------------C  315 (540)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~----~-------------~  315 (540)
                      ...++...-..      .||...|.+++|.|+.. .|++|    +.||.|.|||+.-....    .             .
T Consensus       130 k~s~l~G~~~~------~GH~~SvkS~cf~~~n~~vF~tG----gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  130 KTSRLVGGRLN------LGHTGSVKSECFMPTNPAVFCTG----GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             ccceeecceee------cccccccchhhhccCCCcceeec----cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence            98876554211      59999999999999765 67777    99999999999754210    0             0


Q ss_pred             EEee----cCCCCcccc----eeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeec---ccC---CcceeEE
Q 009203          316 VTFL----DDKPHVKGI----INSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHR---NLH---SSAVMGV  380 (540)
Q Consensus       316 ~~~~----~~~~~~~~~----v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~---~~~---~~~v~~l  380 (540)
                      ...+    .....+...    |+.+.| . |...||+++. |+.|+|||++.....++......   ..|   .-.+.++
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL  277 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL  277 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence            0000    000012223    444555 4 7788888887 99999999998765443322211   112   3457788


Q ss_pred             EeccCCCEEEEEeCCCeEEEEECCCCCee--eeec---cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          381 AGMQQKQIVLSAGADKRIIGFDAGVGRAD--FKHQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      .....|.+|++.+.|+.|++||+..-...  ..+.   ....-..-..+|++   .++++|+.|...++|.+.+.+....
T Consensus       278 ~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~---~~l~SgSsd~~ayiw~vs~~e~~~~  354 (720)
T KOG0321|consen  278 ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD---CSLLSGSSDEQAYIWVVSSPEAPPA  354 (720)
T ss_pred             EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC---ceEeccCCCcceeeeeecCccCChh
Confidence            88778899888888999999999874432  1111   11222333456666   7999999999999999998775443


Q ss_pred             eeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCC------------cccccccccccceeEEEEcCC
Q 009203          456 AFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSAN------------KPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~------------~~~~~~~~h~~~i~~l~~s~~  522 (540)
                            .+.+|.-.|++++|.|.. .-+++++.|..++||++.++-.            .....+++|.-.+..+.|+-.
T Consensus       355 ------~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~  428 (720)
T KOG0321|consen  355 ------LLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLR  428 (720)
T ss_pred             ------hhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhcccccccccccccc
Confidence                  457899999999998843 3466779999999999975210            122344566555555555433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.92  E-value=4.3e-23  Score=193.76  Aligned_cols=143  Identities=13%  Similarity=0.138  Sum_probs=119.6

Q ss_pred             eCCCeEEEEECCCCCe-----eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc
Q 009203          393 GADKRIIGFDAGVGRA-----DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ  467 (540)
Q Consensus       393 ~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  467 (540)
                      +..|.|-||+++....     +-....+..++.+.|+|.+.  ..|++++.||.|++|.+..+............+..|.
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~--~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~  677 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDD--ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG  677 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCCh--HHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence            4467889999876332     23355667889999999876  4799999999999999987664443333344678899


Q ss_pred             cCeEEEEEcC-CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          468 SALINQSWSP-DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       468 ~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ..|+++.|+| -...|++++.|-+|++||+.+  .+....+.+|.+.|.+++|+|||+.+++.|.||+|+||+
T Consensus       678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~--~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  678 EKITSLRFHPLAADVLAVASYDSTIELWDLAN--AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             ceEEEEEecchhhhHhhhhhccceeeeeehhh--hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence            9999999999 457899999999999999998  788889999999999999999999999999999999985

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2e-22  Score=173.72  Aligned_cols=268  Identities=14%  Similarity=0.197  Sum_probs=195.2

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCCeEEEEeec
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSAHTA  295 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~~  295 (540)
                      +..+|.+-|.|+.|.+ .|+.+|+|+.|++|+|||..+...........    ..|.+.|..+.|.+  -|+.+|++   
T Consensus         8 i~s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W----rah~~Si~rV~WAhPEfGqvvA~c---   79 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW----RAHDGSIWRVVWAHPEFGQVVATC---   79 (361)
T ss_pred             cccCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeE----EecCCcEEEEEecCccccceEEEE---
Confidence            3468999999999999 59999999999999999987666545554444    47899999999954  58999999   


Q ss_pred             CCCCCeEEEEecCCCC----C--ceeEEeecCCCCcccceeEEEEeCC-CCCEEEEEecCCcEEEEecCCCCCcccccee
Q 009203          296 DSGDSQISVLNLNKTK----G--RACVTFLDDKPHVKGIINSIIFLPW-ENPCFATGGSDHAVVLWSERDAEDSWKPKAL  368 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~----~--~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  368 (540)
                       +.|+++.||.-....    +  -.....+..   ..+.|+.+.|.|. -|-.|++++.||.++||+.-....+......
T Consensus        80 -S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D---srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq  155 (361)
T KOG2445|consen   80 -SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD---SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ  155 (361)
T ss_pred             -ecCCceeeeeecccccccccceeEEEEEeec---CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence             999999999763111    1  112223332   3577999999984 3677899999999999987654332211111


Q ss_pred             e--------cccCCcceeEEEeccC---CCEEEEEeCC-----CeEEEEECCCCCe--ee---eeccCccEEEEeecCCC
Q 009203          369 H--------RNLHSSAVMGVAGMQQ---KQIVLSAGAD-----KRIIGFDAGVGRA--DF---KHQIESKCMSVLPNPCD  427 (540)
Q Consensus       369 ~--------~~~~~~~v~~l~~s~~---~~~l~~~~~d-----g~i~iwd~~~~~~--~~---~~~~~~~~~~~~~~~~~  427 (540)
                      .        ...+..+..|+.|+|.   ..+|++|+.+     +.++||....+..  ..   .......+..++|.|.-
T Consensus       156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~  235 (361)
T KOG2445|consen  156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI  235 (361)
T ss_pred             hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence            1        1126677889999873   4678888775     4788887765432  11   13456788899999863


Q ss_pred             -CCceEEEEEcCCCeEEEEECCCCcc-----------eee--eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 009203          428 -FNLFMVQTGTPGRQLRLYDIRLRQT-----------EIH--AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHL  493 (540)
Q Consensus       428 -~~~~~l~~~~~dg~v~i~d~~~~~~-----------~~~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~i  493 (540)
                       ....+|++++.|| |+||.+.....           ...  .+.....+.+|.+.|..+.|+-.|..|++.|.||.|++
T Consensus       236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL  314 (361)
T KOG2445|consen  236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL  314 (361)
T ss_pred             CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence             3346889999999 99999984210           000  01112357899999999999999999999999999999


Q ss_pred             EeccC
Q 009203          494 FDIRY  498 (540)
Q Consensus       494 wd~~~  498 (540)
                      |...-
T Consensus       315 Wkany  319 (361)
T KOG2445|consen  315 WKANY  319 (361)
T ss_pred             hhhhh
Confidence            98764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=4e-23  Score=176.75  Aligned_cols=286  Identities=16%  Similarity=0.207  Sum_probs=210.6

Q ss_pred             cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc---------------
Q 009203          152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN---------------  216 (540)
Q Consensus       152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~---------------  216 (540)
                      ..|.+.|+++.+.+..                              .+.+.++..|+.|.+||.+               
T Consensus        40 r~HgGsvNsL~id~te------------------------------grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~   89 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTE------------------------------GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK   89 (397)
T ss_pred             ccCCCccceeeecccc------------------------------ceEEeecCCCccEEEEEeccccchhhccceehee
Confidence            4688889988888772                              1356778888888888664               


Q ss_pred             -----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC---Ce
Q 009203          217 -----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG---NS  288 (540)
Q Consensus       217 -----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~---~~  288 (540)
                           .--.+|.-.|..+.|-|-+.-++.+++.|.+++|||.++.+....+.         -++.|.+-+|+|-.   .+
T Consensus        90 c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~---------me~~VYshamSp~a~sHcL  160 (397)
T KOG4283|consen   90 CIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK---------MEGKVYSHAMSPMAMSHCL  160 (397)
T ss_pred             eeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee---------cCceeehhhcChhhhcceE
Confidence                 11367888999999999667799999999999999999987655552         34557788888843   36


Q ss_pred             EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC-C------
Q 009203          289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE-D------  361 (540)
Q Consensus       289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~------  361 (540)
                      ||+|    ..+-.|++.|+.+|   .+...+.+   |.+.|.++.|+|...-.|++|+.||.|++||++... +      
T Consensus       161 iA~g----tr~~~VrLCDi~SG---s~sH~LsG---Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~  230 (397)
T KOG4283|consen  161 IAAG----TRDVQVRLCDIASG---SFSHTLSG---HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQ  230 (397)
T ss_pred             EEEe----cCCCcEEEEeccCC---cceeeecc---ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeec
Confidence            7777    89999999999997   56778876   778899999999555567999999999999998652 1      


Q ss_pred             --ccccceee-cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-----C--ccEEEEeecCCCCCce
Q 009203          362 --SWKPKALH-RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-----E--SKCMSVLPNPCDFNLF  431 (540)
Q Consensus       362 --~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~  431 (540)
                        ...++.+. ...|.+.|++++|+.+|.++++++.|..+++|+..+|+.......     .  ....-+. +.+.   .
T Consensus       231 hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s---~  306 (397)
T KOG4283|consen  231 HNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDS---D  306 (397)
T ss_pred             ccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-eccc---c
Confidence              01122222 356899999999999999999999999999999998765322110     0  1111111 1111   1


Q ss_pred             EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      .++.--.++.+.++++-.+....       .+..|-..|.|..+-|+-....+|..|+.|..|-..
T Consensus       307 vfv~~p~~~~lall~~~sgs~ir-------~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  307 VFVLFPNDGSLALLNLLEGSFVR-------RLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             eEEEEecCCeEEEEEccCceEEE-------eeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence            22222234777777777666433       335566789999999998999999999999999874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=3.9e-23  Score=182.67  Aligned_cols=253  Identities=19%  Similarity=0.228  Sum_probs=188.1

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC-------------CceeEEeecCCCCcccceeEEEEeCC
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK-------------GRACVTFLDDKPHVKGIINSIIFLPW  337 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~p~  337 (540)
                      .+|.+.++.+.-++-++-.++++.  +..|.|.|||+...-             ....+..+.   .|.+.=++++|+|.
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~asw--se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~---ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASW--SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN---GHKGEGYGLDWSPI  222 (440)
T ss_pred             cccccccceeeecccCCcceeeee--cccCcEEEEEchhhhhhhcCccccccccccCceEEec---ccCccceeeecccc
Confidence            477888888888776653333323  899999999987431             112233333   35677889999996


Q ss_pred             CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCC---Ceeeeec
Q 009203          338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVG---RADFKHQ  413 (540)
Q Consensus       338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~---~~~~~~~  413 (540)
                      ....|++|..-+.|++|...++.-  ........+|+..|..++|||. ...|++|+.||+|+|||+|.+   .++....
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W--~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA  300 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSW--KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA  300 (440)
T ss_pred             cccccccCccccceEeeeeccCce--eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec
Confidence            666788988889999999998653  3333334569999999999995 568899999999999999988   4566677


Q ss_pred             cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEE
Q 009203          414 IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIH  492 (540)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~  492 (540)
                      +.+.+..+.|+...   .+|++|+.||+++|||++..+...    ....++-|..+|++|.|+|. ...|++++.|..|.
T Consensus       301 h~sDVNVISWnr~~---~lLasG~DdGt~~iwDLR~~~~~~----pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit  373 (440)
T KOG0302|consen  301 HNSDVNVISWNRRE---PLLASGGDDGTLSIWDLRQFKSGQ----PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT  373 (440)
T ss_pred             cCCceeeEEccCCc---ceeeecCCCceEEEEEhhhccCCC----cceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence            77889999999876   489999999999999999755331    22356789999999999995 56788889999999


Q ss_pred             EEeccCCCC------c--------cccccccc--ccceeEEEEcCCCC-EEEEEEcCCcEEEE
Q 009203          493 LFDIRYSAN------K--------PSQSIRAH--QKRVFKAVWHYSHP-LLISISSDLNIGLH  538 (540)
Q Consensus       493 iwd~~~~~~------~--------~~~~~~~h--~~~i~~l~~s~~~~-~l~s~~~dg~v~iw  538 (540)
                      |||+.....      .        +-+-+-.|  ...|..+.|++.-+ +|++.+.|| +.||
T Consensus       374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             EEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            999974211      0        11112234  33688899998764 888888888 3444

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.5e-22  Score=182.74  Aligned_cols=247  Identities=15%  Similarity=0.153  Sum_probs=190.2

Q ss_pred             ceeEEEec-------CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeec---------------CCCCcccceeEEEE
Q 009203          277 PEDIAWHP-------QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLD---------------DKPHVKGIINSIIF  334 (540)
Q Consensus       277 V~~~~~~~-------~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~---------------~~~~~~~~v~~~~~  334 (540)
                      ..|++|..       .|+++|.|    ..+..|.|||+.-.....+...+.               .-.+|++.|.+++|
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiG----tmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~  251 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIG----TMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW  251 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEe----ccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence            45777743       36799999    999999999987543222222222               01257788899999


Q ss_pred             eCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCC-eeeee
Q 009203          335 LPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGR-ADFKH  412 (540)
Q Consensus       335 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~  412 (540)
                      +....+.|++|+.|.+|.+||+.++++   ...+  ..|...|.++.|+| ...+|++|+.|++|.+.|.|... .-...
T Consensus       252 n~~~~nVLaSgsaD~TV~lWD~~~g~p---~~s~--~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w  326 (463)
T KOG0270|consen  252 NRNFRNVLASGSADKTVKLWDVDTGKP---KSSI--THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW  326 (463)
T ss_pred             ccccceeEEecCCCceEEEEEcCCCCc---ceeh--hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence            876678999999999999999999997   3333  35899999999988 46789999999999999999532 23446


Q ss_pred             ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcE
Q 009203          413 QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVI  491 (540)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i  491 (540)
                      ...+.+-.+.|+|...  ..++++..||+|+-+|++....+..      ++..|..+|.++++++.- .+|++++.|+.|
T Consensus       327 k~~g~VEkv~w~~~se--~~f~~~tddG~v~~~D~R~~~~~vw------t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~V  398 (463)
T KOG0270|consen  327 KFDGEVEKVAWDPHSE--NSFFVSTDDGTVYYFDIRNPGKPVW------TLKAHDDEISGLSVNIQTPGLLSTASTDKVV  398 (463)
T ss_pred             EeccceEEEEecCCCc--eeEEEecCCceEEeeecCCCCCcee------EEEeccCCcceEEecCCCCcceeeccccceE
Confidence            6778888899998765  4788899999999999998875554      457899999999998753 578899999999


Q ss_pred             EEEeccCCCCcccccccccccceeEEEEcCCCC-EEEEEEcCCcEEEEeC
Q 009203          492 HLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-LLISISSDLNIGLHKI  540 (540)
Q Consensus       492 ~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~v~iw~l  540 (540)
                      .+|++.....+.+..-...-+...|+++.|+-. .++.||..+.++|||+
T Consensus       399 klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  399 KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             EEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence            999998643433333222334577888888775 6788888888999996

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=8.1e-23  Score=186.92  Aligned_cols=258  Identities=16%  Similarity=0.206  Sum_probs=209.2

Q ss_pred             CCCCeEEEeccch---------h-cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          205 ASPATIHCHTSNH---------V-SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       205 ~~d~~i~~~~~~~---------~-~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      ..-+.|++|+..+         + .....+-|.++.+.|| |+.|++|+.-.++.|||+.....  .+....    +.-.
T Consensus       437 gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd-grtLivGGeastlsiWDLAapTp--rikael----tssa  509 (705)
T KOG0639|consen  437 GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD-GRTLIVGGEASTLSIWDLAAPTP--RIKAEL----TSSA  509 (705)
T ss_pred             cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCC-CceEEeccccceeeeeeccCCCc--chhhhc----CCcc
Confidence            3467899997651         1 1223467899999996 99999999999999999987543  221111    1122


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      -...+++.+||.+..+++    ..||.|.|||+...   ..++.|.+   |.+.+.||.+++ +|..|-||+-|.+|+-|
T Consensus       510 paCyALa~spDakvcFsc----csdGnI~vwDLhnq---~~VrqfqG---htDGascIdis~-dGtklWTGGlDntvRcW  578 (705)
T KOG0639|consen  510 PACYALAISPDAKVCFSC----CSDGNIAVWDLHNQ---TLVRQFQG---HTDGASCIDISK-DGTKLWTGGLDNTVRCW  578 (705)
T ss_pred             hhhhhhhcCCccceeeee----ccCCcEEEEEcccc---eeeecccC---CCCCceeEEecC-CCceeecCCCccceeeh
Confidence            346788999999999999    89999999999974   66777776   677799999999 99999999999999999


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  434 (540)
                      |++++..      +......+.|.++.++|++.+|++|-.++.+.+........-..+.++.-++++.|.+.+   ++++
T Consensus       579 Dlregrq------lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cG---kwfv  649 (705)
T KOG0639|consen  579 DLREGRQ------LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCG---KWFV  649 (705)
T ss_pred             hhhhhhh------hhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccC---ceee
Confidence            9999864      112235678999999999999999999999999988877767778888999999999988   7999


Q ss_pred             EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      +.+.|+.+..|...-+...+..        ...+.|.++.+|.|.++|++|+.|....||.+.
T Consensus       650 StGkDnlLnawrtPyGasiFqs--------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  650 STGKDNLLNAWRTPYGASIFQS--------KESSSVLSCDISFDDKYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             ecCchhhhhhccCccccceeec--------cccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence            9999999999998876654432        235689999999999999999999999888763

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.1e-22  Score=196.10  Aligned_cols=247  Identities=12%  Similarity=0.184  Sum_probs=196.5

Q ss_pred             CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203          272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV  351 (540)
Q Consensus       272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  351 (540)
                      .|...-+.++|.|+|.+|+++    +.||.|++|+.....  .....+..   +...|.+++.   .+++|++|+.+++|
T Consensus        11 aht~G~t~i~~d~~gefi~tc----gsdg~ir~~~~~sd~--e~P~ti~~---~g~~v~~ia~---~s~~f~~~s~~~tv   78 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTC----GSDGDIRKWKTNSDE--EEPETIDI---SGELVSSIAC---YSNHFLTGSEQNTV   78 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEe----cCCCceEEeecCCcc--cCCchhhc---cCceeEEEee---cccceEEeeccceE
Confidence            688888999999999999999    999999999987651  11111111   3456788877   55699999999999


Q ss_pred             EEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCc
Q 009203          352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  430 (540)
                      .+|.+..++.   -..+.+  .+-++++++|+-+|++++.|+.|-.|++.++........ ..+...+.++.++|.+   
T Consensus        79 ~~y~fps~~~---~~iL~R--ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~---  150 (933)
T KOG1274|consen   79 LRYKFPSGEE---DTILAR--FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG---  150 (933)
T ss_pred             EEeeCCCCCc---cceeee--eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC---
Confidence            9999998874   112322  567899999999999999999999999999988666544 6678899999999988   


Q ss_pred             eEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES-QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-  508 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-  508 (540)
                      .+||+.+.||.|++||+.++......-+........ ...++.++|+|+|..++..+.|+.|.+|+...  ......+. 
T Consensus       151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~--we~~f~Lr~  228 (933)
T KOG1274|consen  151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG--WELQFKLRD  228 (933)
T ss_pred             CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC--ceeheeecc
Confidence            799999999999999999877544333322222222 34567799999988888888999999999998  45555444 


Q ss_pred             -ccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          509 -AHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       509 -~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                       .+...+..+.|+|.|+|||+++.||.|.|||.
T Consensus       229 ~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv  261 (933)
T KOG1274|consen  229 KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV  261 (933)
T ss_pred             cccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence             34455999999999999999999999999985

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.6e-24  Score=206.34  Aligned_cols=256  Identities=14%  Similarity=0.210  Sum_probs=213.0

Q ss_pred             CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          235 NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       235 ~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      +..+++.+..+-.+++|+....              ..|...|.++..-..++.++.|    +.|..+-+|.+...   .
T Consensus         3 ~~~~~m~~~~~t~Lr~~~~~~~--------------~~hsaav~~lk~~~s~r~~~~G----g~~~k~~L~~i~kp---~   61 (825)
T KOG0267|consen    3 GMEFLMKTKRATKLRVWDTREF--------------VAHSAAVGCLKIRKSSRSLVTG----GEDEKVNLWAIGKP---N   61 (825)
T ss_pred             cccccceeeeeeccccccchhh--------------hhhhhhhceeeeeccceeeccC----CCceeeccccccCC---c
Confidence            3455666666777888887642              2577778888887778889998    99999999998764   3


Q ss_pred             eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203          315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA  394 (540)
Q Consensus       315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  394 (540)
                      .+..+.+   |..+|.++.|++ ...+|++|+.+|+|++||+.....   +..+  .+|...+.++.|+|-+.+++.|+.
T Consensus        62 ~i~S~~~---hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~---vrtL--tgh~~~~~sv~f~P~~~~~a~gSt  132 (825)
T KOG0267|consen   62 AITSLTG---HESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKI---VRTL--TGHLLNITSVDFHPYGEFFASGST  132 (825)
T ss_pred             hhheeec---cCCcceeeecCc-chhhhcccccCCceeeeehhhhhh---hhhh--hccccCcceeeeccceEEeccccc
Confidence            3444554   788999999999 889999999999999999998875   3444  569999999999999999999999


Q ss_pred             CCeEEEEECCCCCeeeeeccCcc-EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEE
Q 009203          395 DKRIIGFDAGVGRADFKHQIESK-CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ  473 (540)
Q Consensus       395 dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~  473 (540)
                      |+.+++||.+...+.+.+..+.. +..+.|+|++   ++++.|+.|..++|||+..++...       ++..|.+.+..+
T Consensus       133 dtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G---r~v~~g~ed~tvki~d~~agk~~~-------ef~~~e~~v~sl  202 (825)
T KOG0267|consen  133 DTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG---RWVASGGEDNTVKIWDLTAGKLSK-------EFKSHEGKVQSL  202 (825)
T ss_pred             cccceehhhhccCceeeecCCcceeEEEeecCCC---ceeeccCCcceeeeeccccccccc-------cccccccccccc
Confidence            99999999997777776655444 4567899998   899999999999999998776432       667899999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203          474 SWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       474 ~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                      .|+|..-.+++|+.|+++++||+++  ...+.........|.+++|+|++..+.+|..+
T Consensus       203 e~hp~e~Lla~Gs~d~tv~f~dlet--fe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  203 EFHPLEVLLAPGSSDRTVRFWDLET--FEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ccCchhhhhccCCCCceeeeeccce--eEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            9999999999999999999999997  67777777677889999999999988887654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=2.5e-22  Score=189.72  Aligned_cols=274  Identities=14%  Similarity=0.135  Sum_probs=214.9

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      .|..++|.|| |..|+.+. +..+.|||.+.+....++        .+|.+.|.+++|+.||+.+++|    +.|..|.+
T Consensus        14 ci~d~afkPD-GsqL~lAA-g~rlliyD~ndG~llqtL--------KgHKDtVycVAys~dGkrFASG----~aDK~VI~   79 (1081)
T KOG1538|consen   14 CINDIAFKPD-GTQLILAA-GSRLLVYDTSDGTLLQPL--------KGHKDTVYCVAYAKDGKRFASG----SADKSVII   79 (1081)
T ss_pred             chheeEECCC-CceEEEec-CCEEEEEeCCCccccccc--------ccccceEEEEEEccCCceeccC----CCceeEEE
Confidence            8999999998 44444443 347999999999888777        6999999999999999999999    99999999


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  384 (540)
                      |.-.-.   ..++.     .|.+.|.|+.|+| -...|++++- ...-+|.......       ........|.+++|..
T Consensus        80 W~~klE---G~LkY-----SH~D~IQCMsFNP-~~h~LasCsL-sdFglWS~~qK~V-------~K~kss~R~~~CsWtn  142 (1081)
T KOG1538|consen   80 WTSKLE---GILKY-----SHNDAIQCMSFNP-ITHQLASCSL-SDFGLWSPEQKSV-------SKHKSSSRIICCSWTN  142 (1081)
T ss_pred             eccccc---ceeee-----ccCCeeeEeecCc-hHHHhhhcch-hhccccChhhhhH-------HhhhhheeEEEeeecC
Confidence            986532   11222     3678899999999 8888999886 3467888876542       1122456789999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCCCc--eEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          385 QKQIVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDFNL--FMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       385 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      ||++++.|-.+|+|.+-+-.........   ....++.+++|+|....+  ..+++.....++.+|.+.......     
T Consensus       143 DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk-----  217 (1081)
T KOG1538|consen  143 DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK-----  217 (1081)
T ss_pred             CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc-----
Confidence            9999999999999999865433333322   245788899999865433  578888888889988887433210     


Q ss_pred             ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                         ...-.-...|+.+.++|.|+..|+.|+.+.+|--+   +..+.++.....+|+.++..|++++++.|+.||+|-.|+
T Consensus       218 ---~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~---GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  218 ---DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD---GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             ---cccCCCCchhheeccCCcEEEEccCCCceEEEeec---CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence               01122356789999999999999999999999877   677888877788999999999999999999999998876


Q ss_pred             C
Q 009203          540 I  540 (540)
Q Consensus       540 l  540 (540)
                      +
T Consensus       292 l  292 (1081)
T KOG1538|consen  292 L  292 (1081)
T ss_pred             h
Confidence            4

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=4.9e-24  Score=203.12  Aligned_cols=246  Identities=20%  Similarity=0.294  Sum_probs=205.7

Q ss_pred             CeEEEeccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC
Q 009203          208 ATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN  287 (540)
Q Consensus       208 ~~i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  287 (540)
                      ..+++|+.. -+..|...|.|+..-. .++.+++|+.|-.+-+|.+.....+..+        .+|..+|.++.|+++..
T Consensus        14 t~Lr~~~~~-~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~--------~~hespIeSl~f~~~E~   83 (825)
T KOG0267|consen   14 TKLRVWDTR-EFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSL--------TGHESPIESLTFDTSER   83 (825)
T ss_pred             eccccccch-hhhhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhhee--------eccCCcceeeecCcchh
Confidence            344566543 2457888999998855 5899999999999999999877666554        69999999999999999


Q ss_pred             eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccce
Q 009203          288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA  367 (540)
Q Consensus       288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  367 (540)
                      +|++|    +.+|+|++||+..+   ..++.+.+   |...+.++.|+| -+.++++|+.|+.+++||++...|     .
T Consensus        84 Llaag----sasgtiK~wDleeA---k~vrtLtg---h~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc-----~  147 (825)
T KOG0267|consen   84 LLAAG----SASGTIKVWDLEEA---KIVRTLTG---HLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGC-----S  147 (825)
T ss_pred             hhccc----ccCCceeeeehhhh---hhhhhhhc---cccCcceeeecc-ceEEeccccccccceehhhhccCc-----e
Confidence            99998    99999999999976   44666665   678899999999 999999999999999999997665     2


Q ss_pred             eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203          368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD  446 (540)
Q Consensus       368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d  446 (540)
                      ..+.+|...|..+.|+|+|.+++.++.|..++|||+..|+.+..+. +...+.++.|+|.+   .+++.|+.|++|++||
T Consensus       148 ~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e---~Lla~Gs~d~tv~f~d  224 (825)
T KOG0267|consen  148 HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE---VLLAPGSSDRTVRFWD  224 (825)
T ss_pred             eeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchh---hhhccCCCCceeeeec
Confidence            3335599999999999999999999999999999999999887766 56788888899987   6889999999999999


Q ss_pred             CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC
Q 009203          447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP  489 (540)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg  489 (540)
                      +++.+...       ........|.+.+|+|+|..+++|....
T Consensus       225 letfe~I~-------s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  225 LETFEVIS-------SGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             cceeEEee-------ccCCccCCceeeeecCCceeeecCchhh
Confidence            99766433       2233456899999999999999886554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.90  E-value=6.2e-22  Score=180.92  Aligned_cols=291  Identities=13%  Similarity=0.153  Sum_probs=211.4

Q ss_pred             EEecCCCCeEEEeccc-----hhccccc--CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVSSLHK--RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~~~h~--~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      +.+++...++++||..     -.+..|+  -.|.++.|+..+.-.+++.+.|..+++|.-...  ..++......  .| 
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k~--~g-   79 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRKL--TG-   79 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC--CCccceeecc--cc-
Confidence            3445556678888764     1122222  349999999742223344467888999976543  1122111111  11 


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                       +.-.|++......++++|    +..++|+|||+..   ..+.+.+.+   |.+.|+++.++- ...+|++++..|.|.|
T Consensus        80 -d~~~Cv~~~s~S~y~~sg----G~~~~Vkiwdl~~---kl~hr~lkd---h~stvt~v~YN~-~DeyiAsvs~gGdiii  147 (673)
T KOG4378|consen   80 -DNAFCVACASQSLYEISG----GQSGCVKIWDLRA---KLIHRFLKD---HQSTVTYVDYNN-TDEYIASVSDGGDIII  147 (673)
T ss_pred             -chHHHHhhhhcceeeecc----CcCceeeehhhHH---HHHhhhccC---CcceeEEEEecC-CcceeEEeccCCcEEE
Confidence             123455555555899999    9999999999995   355566665   678899999998 8889999999999999


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecCCCCCc
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  430 (540)
                      ..+.++..   ...+ ..+....|.-+.|+|..+ +|.+++.+|.|.+||+....+.+.  ..+..++..++|+|.+.  
T Consensus       148 h~~~t~~~---tt~f-~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne--  221 (673)
T KOG4378|consen  148 HGTKTKQK---TTTF-TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE--  221 (673)
T ss_pred             EecccCcc---ccce-ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc--
Confidence            99998864   1222 223345677899998665 456788999999999987666543  34567788899999875  


Q ss_pred             eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      .+|++.+.|..|.+||.+....... +       ....+.+.++|+++|.+|+.|...|.|..||++.. ..++.++..|
T Consensus       222 ~l~vsVG~Dkki~~yD~~s~~s~~~-l-------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~-k~Pv~v~sah  292 (673)
T KOG4378|consen  222 ALLVSVGYDKKINIYDIRSQASTDR-L-------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST-KAPVAVRSAH  292 (673)
T ss_pred             ceEEEecccceEEEeecccccccce-e-------eecCCcceeeecCCceEEEeecCCceEEEEecccC-CCCceEeeec
Confidence            5889999999999999986543221 1       12457899999999999999999999999999974 6789999999


Q ss_pred             ccceeEEEEcCCC
Q 009203          511 QKRVFKAVWHYSH  523 (540)
Q Consensus       511 ~~~i~~l~~s~~~  523 (540)
                      ...|++++|-|.-
T Consensus       293 ~~sVt~vafq~s~  305 (673)
T KOG4378|consen  293 DASVTRVAFQPSP  305 (673)
T ss_pred             ccceeEEEeeecc
Confidence            9999999997653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.3e-21  Score=177.48  Aligned_cols=268  Identities=13%  Similarity=0.173  Sum_probs=198.0

Q ss_pred             eEEecCCCCeEEEec--cc-----hhcccccCceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCC
Q 009203          200 LVRTSASPATIHCHT--SN-----HVSSLHKRKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP  271 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~--~~-----~~~~~h~~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  271 (540)
                      .+-++..|+++++|.  ++     +.+.--.-+|.+.+|.|+ |. .+++++.......||+.+.+...-- ..     .
T Consensus       227 lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~-G~~~i~~s~rrky~ysyDle~ak~~k~~-~~-----~  299 (514)
T KOG2055|consen  227 LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN-GHSVIFTSGRRKYLYSYDLETAKVTKLK-PP-----Y  299 (514)
T ss_pred             eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC-CceEEEecccceEEEEeecccccccccc-CC-----C
Confidence            456677788888883  33     112333578999999996 66 9999999999999999887642211 11     1


Q ss_pred             CC-CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203          272 KH-RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA  350 (540)
Q Consensus       272 ~h-~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  350 (540)
                      |+ ...+.....++++++|+..    +..|.|.+....++   ..+..+..    .+.|..++|+. ++..|++++.+|.
T Consensus       300 g~e~~~~e~FeVShd~~fia~~----G~~G~I~lLhakT~---eli~s~Ki----eG~v~~~~fsS-dsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  300 GVEEKSMERFEVSHDSNFIAIA----GNNGHIHLLHAKTK---ELITSFKI----EGVVSDFTFSS-DSKELLASGGTGE  367 (514)
T ss_pred             CcccchhheeEecCCCCeEEEc----ccCceEEeehhhhh---hhhheeee----ccEEeeEEEec-CCcEEEEEcCCce
Confidence            33 3456778889999999999    99999999998886   44665553    56799999998 8899998888999


Q ss_pred             EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC------CCeeee-eccCccEEEEee
Q 009203          351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV------GRADFK-HQIESKCMSVLP  423 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~-~~~~~~~~~~~~  423 (540)
                      |++||++...+   ...+... ..-.-++++.+++|.+|++|+..|.|.|||..+      .+++.. ......+.++.|
T Consensus       368 V~v~nl~~~~~---~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~F  443 (514)
T KOG2055|consen  368 VYVWNLRQNSC---LHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQF  443 (514)
T ss_pred             EEEEecCCcce---EEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeee
Confidence            99999999875   2222221 222346777789999999999999999999754      223332 345677889999


Q ss_pred             cCCCCCceEEEEEcC--CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          424 NPCDFNLFMVQTGTP--GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      +++.   .+|+.++.  +..+++-.+.+.... ..+.   .....-+.|+|++|||.|.+||.|..+|.+.+|.+.
T Consensus       444 n~d~---qiLAiaS~~~knalrLVHvPS~TVF-sNfP---~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  444 NHDA---QILAIASRVKKNALRLVHVPSCTVF-SNFP---TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             Ccch---hhhhhhhhccccceEEEeccceeee-ccCC---CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            9988   56666654  567888877654421 1111   223344579999999999999999999999999875

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=6.8e-22  Score=179.18  Aligned_cols=274  Identities=17%  Similarity=0.177  Sum_probs=200.7

Q ss_pred             ceEEecCCCCeEEEeccc---------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccC
Q 009203          199 PLVRTSASPATIHCHTSN---------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL  269 (540)
Q Consensus       199 ~~~~~~~~d~~i~~~~~~---------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~  269 (540)
                      ..|+.|..-+.|-+|+..         ..+..|.++|.++.|+|.+...+++.++||+|++-|++......-+  ..   
T Consensus       201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~--s~---  275 (498)
T KOG4328|consen  201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVL--SL---  275 (498)
T ss_pred             eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHh--hc---
Confidence            567888888999999772         4578999999999999987889999999999999999875432211  11   


Q ss_pred             CCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203          270 SPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH  349 (540)
Q Consensus       270 ~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  349 (540)
                       ..-...+.++.|+.+...++.+    ..=|.+.+||.+++...  ...+..   |...|.+|+++|....+|+|++.|+
T Consensus       276 -~~d~~~fs~~d~~~e~~~vl~~----~~~G~f~~iD~R~~~s~--~~~~~l---h~kKI~sv~~NP~~p~~laT~s~D~  345 (498)
T KOG4328|consen  276 -DTDNIWFSSLDFSAESRSVLFG----DNVGNFNVIDLRTDGSE--YENLRL---HKKKITSVALNPVCPWFLATASLDQ  345 (498)
T ss_pred             -CccceeeeeccccCCCccEEEe----ecccceEEEEeecCCcc--chhhhh---hhcccceeecCCCCchheeecccCc
Confidence             0123446778888887777777    66779999999987431  222222   4558999999998899999999999


Q ss_pred             cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC----CCCeeeeecc--C----ccEE
Q 009203          350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG----VGRADFKHQI--E----SKCM  419 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~--~----~~~~  419 (540)
                      +++|||++.-..... ..+....|...|.+..|||.+..|++.+.|..|+|||..    ...+.....+  .    -...
T Consensus       346 T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f  424 (498)
T KOG4328|consen  346 TAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF  424 (498)
T ss_pred             ceeeeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccch
Confidence            999999997654322 245556799999999999998889999999999999984    2222222222  1    2334


Q ss_pred             EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE-EEEcCCCCEEE-EEeCCCcEEEEecc
Q 009203          420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN-QSWSPDGLYIT-SGSADPVIHLFDIR  497 (540)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~-sg~~dg~i~iwd~~  497 (540)
                      ...|.|+.   .++++|..-..|-|||-..++......      ......|.+ ..|+|-+..++ .|+..|.|+||--.
T Consensus       425 KA~W~P~~---~li~vg~~~r~IDv~~~~~~q~v~el~------~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  425 KAAWDPDY---NLIVVGRYPRPIDVFDGNGGQMVCELH------DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             hheeCCCc---cEEEEeccCcceeEEcCCCCEEeeecc------CccccccccceeecccccceeccCCccceEEEEecC
Confidence            56788866   689999988899999998777433211      111223444 48999887454 45567888888654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=9e-22  Score=174.79  Aligned_cols=304  Identities=12%  Similarity=0.132  Sum_probs=218.8

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +.+|.+.|+++.|+. ++++|++|+.|..+++|++...-... ...........|...|.|++|.....++++|    ..
T Consensus        52 ~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k-~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG----~~  125 (609)
T KOG4227|consen   52 VREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRK-TPKPIGVMEHPHRSNIFSLEFDLENRFLYSG----ER  125 (609)
T ss_pred             hhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhc-CCCCceeccCccccceEEEEEccCCeeEecC----CC
Confidence            579999999999999 59999999999999999986432111 1111222224577899999999999999999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      +++|...|+.+.   +.+.++.. ....+.|+.+..+| ..+.|++.+.++.|.+||.+.......+...  ........
T Consensus       126 ~~~VI~HDiEt~---qsi~V~~~-~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~--AN~~~~F~  198 (609)
T KOG4227|consen  126 WGTVIKHDIETK---QSIYVANE-NNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLP--ANSGKNFY  198 (609)
T ss_pred             cceeEeeecccc---eeeeeecc-cCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeee--cCCCccce
Confidence            999999999986   33444432 22356899999999 6888999999999999999986632111111  23455678


Q ss_pred             EEEeccC-CCEEEEEeCCCeEEEEECCCCCe-eeee----cc---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203          379 GVAGMQQ-KQIVLSAGADKRIIGFDAGVGRA-DFKH----QI---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL  449 (540)
Q Consensus       379 ~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~-~~~~----~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  449 (540)
                      ++.|+|. ..+|++.+..+-+-+||.+.... ++..    ..   ....++..|+|.+   ..+.+--....-.+||+-.
T Consensus       199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G---~Q~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG---NQFMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC---CeehhhhccCCCEEeeeec
Confidence            8899985 46778888888999999987543 2211    11   2234678899987   4455555555666788877


Q ss_pred             CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC---C------------------ccccccc
Q 009203          450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA---N------------------KPSQSIR  508 (540)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~---~------------------~~~~~~~  508 (540)
                      ..+.+..+.+...-.-....+.+++|--|. -+++|+.+-.|++|.+....   +                  ..+..++
T Consensus       276 ~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr  354 (609)
T KOG4227|consen  276 QRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR  354 (609)
T ss_pred             ccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe
Confidence            666554433221111123356677886554 49999999999999986310   0                  1244678


Q ss_pred             ccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          509 AHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       509 ~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      +|..-++.+.|+|...+|++.|....++||.
T Consensus       355 GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  355 GHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             cccccccceeecCCcceEeccchhhheeccc
Confidence            9999999999999999999999999999994

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=1.7e-21  Score=169.05  Aligned_cols=289  Identities=15%  Similarity=0.138  Sum_probs=204.8

Q ss_pred             eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcce----eeccccc-CCCCCCCCceeEEEe-------cCCCeEEEEe
Q 009203          226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGAS----LLSTTDC-LSPKHRRWPEDIAWH-------PQGNSLFSAH  293 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~----~~~~~~~-~~~~h~~~V~~~~~~-------~~~~~l~s~~  293 (540)
                      ...+.|+|| |..|++-+.|..+++|++........    ....... ..-.....|...+|-       |+..++++. 
T Consensus        52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s-  129 (406)
T KOG2919|consen   52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS-  129 (406)
T ss_pred             hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec-
Confidence            456889997 88999999999999999864321111    0000000 000123457778885       566788888 


Q ss_pred             ecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEec-CCCCCccccceee---
Q 009203          294 TADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE-RDAEDSWKPKALH---  369 (540)
Q Consensus       294 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~---  369 (540)
                         +.+.-|++||.-+|+.+...+....... -....+++|+| ||..|++|. ..+|++||+ +.|.. .......   
T Consensus       130 ---sr~~PIh~wdaftG~lraSy~~ydh~de-~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~-c~vy~t~~~~  202 (406)
T KOG2919|consen  130 ---SRDQPIHLWDAFTGKLRASYRAYDHQDE-YTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRD-CPVYTTVTKG  202 (406)
T ss_pred             ---cccCceeeeeccccccccchhhhhhHHh-hhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCC-Ccchhhhhcc
Confidence               9999999999999854333333221110 11256899999 999998766 589999999 44432 1111111   


Q ss_pred             cccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcC-CCeEEEEE
Q 009203          370 RNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTP-GRQLRLYD  446 (540)
Q Consensus       370 ~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~v~i~d  446 (540)
                      ..+..+-+.+++|+|.. ..+++|+....+-||.-..+.++.. ...++.++.+.|.+++   ..|++|+. |..|..||
T Consensus       203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG---n~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG---NKLFSGARKDDKILCWD  279 (406)
T ss_pred             cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc---CeecccccCCCeEEEEe
Confidence            23346789999999954 5889999988888888877777655 5677889999999998   46666654 77899999


Q ss_pred             CCCCcceeeeeccccccCcccc---CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203          447 IRLRQTEIHAFGWKQESSESQS---ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH  523 (540)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~  523 (540)
                      ++....++..+      ..|..   .-.-....|+|++|++|+.||.|++||+... +..+..+..|...++.++++|--
T Consensus       280 iR~~~~pv~~L------~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~-gn~~sv~~~~sd~vNgvslnP~m  352 (406)
T KOG2919|consen  280 IRYSRDPVYAL------ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL-GNEVSVTGNYSDTVNGVSLNPIM  352 (406)
T ss_pred             ehhccchhhhh------hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC-CCcccccccccccccceecCccc
Confidence            99766555432      23333   2223455789999999999999999999975 56677888899999999999999


Q ss_pred             CEEEEEEcCC
Q 009203          524 PLLISISSDL  533 (540)
Q Consensus       524 ~~l~s~~~dg  533 (540)
                      +++++++...
T Consensus       353 pilatssGqr  362 (406)
T KOG2919|consen  353 PILATSSGQR  362 (406)
T ss_pred             ceeeeccCce
Confidence            9999887553

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.89  E-value=7e-21  Score=162.88  Aligned_cols=292  Identities=14%  Similarity=0.216  Sum_probs=206.7

Q ss_pred             ceEEEEEe--cCCCcEEEEEeC----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-----eEEEEe
Q 009203          225 KLRSLSLN--PVNEQLFVTSAL----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-----SLFSAH  293 (540)
Q Consensus       225 ~V~~l~~s--pd~~~~l~tg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-----~l~s~~  293 (540)
                      ++.++.|+  |+.+.+||.|+.    .+.|.|-.+.....  .+.....   ..|..+++.+.|.|+..     +||++ 
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--e~~~~a~---fd~~YP~tK~~wiPd~~g~~pdlLATs-  119 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--ELVEDAN---FDHPYPVTKLMWIPDSKGVYPDLLATS-  119 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--ceeccCC---CCCCCCccceEecCCccccCcchhhcc-
Confidence            57788887  555778999873    46677776653322  2221111   37889999999999863     55553 


Q ss_pred             ecCCCCCeEEEEecCCCCCcee-EEeec--CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203          294 TADSGDSQISVLNLNKTKGRAC-VTFLD--DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       294 ~~~~~d~~i~vwd~~~~~~~~~-~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                           +..+++|.+........ ...+.  ...++.+++++..|+..+.++|.+++-|-+..|||++++.... . ....
T Consensus       120 -----~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-v-kTQL  192 (364)
T KOG0290|consen  120 -----SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-V-KTQL  192 (364)
T ss_pred             -----cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-e-eeEE
Confidence                 66799999885322111 11111  1224567899999998899999999999999999999973211 1 1122


Q ss_pred             ccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCe---eeeecc-CccEEEEeecCCCCCceEEEEEcC-CCeEEE
Q 009203          371 NLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRA---DFKHQI-ESKCMSVLPNPCDFNLFMVQTGTP-GRQLRL  444 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-dg~v~i  444 (540)
                      -.|...|..++|..++ +.+++++.||.+|+||++....   ++.... ......++|++.+++  ++++-.. ...|.|
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn--ymATf~~dS~~V~i  270 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN--YMATFAMDSNKVVI  270 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch--HHhhhhcCCceEEE
Confidence            4599999999998754 6789999999999999997554   333223 456788999988775  6666444 457999


Q ss_pred             EECCCCcceeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeccCCCC----cccccccccccceeEEEE
Q 009203          445 YDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIRYSAN----KPSQSIRAHQKRVFKAVW  519 (540)
Q Consensus       445 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~h~~~i~~l~~  519 (540)
                      .|++....+..      .+.+|.+.|++++|.|. ...|++++.|..+.|||+.....    .++..+. -.+.|+.+.|
T Consensus       271 LDiR~P~tpva------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~W  343 (364)
T KOG0290|consen  271 LDIRVPCTPVA------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQW  343 (364)
T ss_pred             EEecCCCccee------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeee
Confidence            99997765544      66899999999999995 57899999999999999987422    2333333 4568999999


Q ss_pred             cCCC-CEEEEEEcCCcEEEEe
Q 009203          520 HYSH-PLLISISSDLNIGLHK  539 (540)
Q Consensus       520 s~~~-~~l~s~~~dg~v~iw~  539 (540)
                      ++.- ..++.+ .+.++.|-+
T Consensus       344 s~~~~Dwiai~-~~kkleiLR  363 (364)
T KOG0290|consen  344 SSSQPDWIAIC-FGKKLEILR  363 (364)
T ss_pred             cccCCCEEEEE-ecCeeeEEe
Confidence            9755 455554 456666544

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=7.7e-21  Score=180.46  Aligned_cols=244  Identities=16%  Similarity=0.208  Sum_probs=198.7

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      .+|.++||+.+.+.||.+    -.+|.|-+|++..+  ..+...+.+  +....|.+++|++  +..|++.+.+|.|.-|
T Consensus        26 s~I~slA~s~kS~~lAvs----Rt~g~IEiwN~~~~--w~~~~vi~g--~~drsIE~L~W~e--~~RLFS~g~sg~i~Ew   95 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVS----RTDGNIEIWNLSNN--WFLEPVIHG--PEDRSIESLAWAE--GGRLFSSGLSGSITEW   95 (691)
T ss_pred             cceEEEEEeccCCceeee----ccCCcEEEEccCCC--ceeeEEEec--CCCCceeeEEEcc--CCeEEeecCCceEEEE
Confidence            558999999999999999    99999999999975  444555555  3467799999995  5577788889999999


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCCCce
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  431 (540)
                      |+.+.+.     ........+.|++++.+|.+..++.|+.||.+..++...++..+..   ...+.+.++.|+|++   .
T Consensus        96 Dl~~lk~-----~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~---~  167 (691)
T KOG2048|consen   96 DLHTLKQ-----KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG---T  167 (691)
T ss_pred             ecccCce-----eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc---c
Confidence            9999874     3333457789999999999999999999998888888887776553   235889999999998   5


Q ss_pred             EEEEEcCCCeEEEEECCCCcceee-eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          432 MVQTGTPGRQLRLYDIRLRQTEIH-AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      .+++|+.||.|++||...+..... ..+.....++...-|+++.|-.+ ..|++|.+.|.|.+||...  +.++..+..|
T Consensus       168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~--gTLiqS~~~h  244 (691)
T KOG2048|consen  168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIF--GTLIQSHSCH  244 (691)
T ss_pred             EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccC--cchhhhhhhh
Confidence            699999999999999998774331 11111111223445788888755 4799999999999999998  8899999999


Q ss_pred             ccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          511 QKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       511 ~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .+-|.+++.++++.+++++|.|+.|.-+.
T Consensus       245 ~adVl~Lav~~~~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  245 DADVLALAVADNEDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             hcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence            99999999999999999999999987664

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=1.8e-21  Score=174.03  Aligned_cols=290  Identities=17%  Similarity=0.221  Sum_probs=202.7

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcce-eecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGAS-LLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      ..+|..+.|.+.+...||||+.|..|+||.+........ ....+......|...|+++.|+|+|+.|++|    +.+|.
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg----~D~g~   88 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASG----GDGGE   88 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeec----CCCce
Confidence            368999999985444999999999999999876554331 1112222336899999999999999999999    99999


Q ss_pred             EEEEecC--------C-----CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee
Q 009203          302 ISVLNLN--------K-----TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL  368 (540)
Q Consensus       302 i~vwd~~--------~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  368 (540)
                      |.+|-..        +     .........+.   .|...|..++|+| ++.++++++.|..+++||+..+..     ..
T Consensus        89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr---~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l-----~~  159 (434)
T KOG1009|consen   89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLR---GHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQL-----LA  159 (434)
T ss_pred             EEEEEecCcCCccccchhhhCccceEEEEEec---ccccchhhhhccC-CCceeeeeeccceEEEEEecccee-----Ee
Confidence            9999776        2     11111222333   3677899999999 999999999999999999999974     22


Q ss_pred             ecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec------------------------cCccEEEEeec
Q 009203          369 HRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ------------------------IESKCMSVLPN  424 (540)
Q Consensus       369 ~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------------~~~~~~~~~~~  424 (540)
                      ....|...+..++|.|-++++++-+.|...+.+++.....+..+.                        .......++|+
T Consensus       160 ~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT  239 (434)
T KOG1009|consen  160 ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT  239 (434)
T ss_pred             eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC
Confidence            335699999999999999999999999877777765433322111                        01223345667


Q ss_pred             CCCCCceEEEEEcC---------CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC------------------
Q 009203          425 PCDFNLFMVQTGTP---------GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP------------------  477 (540)
Q Consensus       425 ~~~~~~~~l~~~~~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------------------  477 (540)
                      |++   .++++.+.         -+..++|+-.....+...      +..-..++..+.|+|                  
T Consensus       240 PdG---~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~------lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp  310 (434)
T KOG1009|consen  240 PDG---SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR------LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP  310 (434)
T ss_pred             CCC---cEEEcccceeeeCCceeeceeEeeccccccCceee------cCCCCcceEEEEeeeeEEEeccccccccccccc
Confidence            776   45665432         133455655544333322      222333445555544                  


Q ss_pred             CCCEEEEEeCCCcEEEEeccCCCCccccccc-ccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203          478 DGLYITSGSADPVIHLFDIRYSANKPSQSIR-AHQKRVFKAVWHYSHPLLISISSDLNIGL  537 (540)
Q Consensus       478 ~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~~~~~l~s~~~dg~v~i  537 (540)
                      -+-.+|.+ ....|+|||.++  ..++.... -|-..|++++|++||.+|+..|.||...+
T Consensus       311 yrlvfaiA-t~~svyvydtq~--~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  311 YRLVFAIA-TKNSVYVYDTQT--LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             cceEEEEe-ecceEEEecccc--ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence            12234444 456699999997  55555443 58889999999999999999999997654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.89  E-value=3.8e-22  Score=173.47  Aligned_cols=252  Identities=19%  Similarity=0.256  Sum_probs=197.5

Q ss_pred             cccCceEEEEEecC---CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecC
Q 009203          221 LHKRKLRSLSLNPV---NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTAD  296 (540)
Q Consensus       221 ~h~~~V~~l~~spd---~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~  296 (540)
                      .|......++|+-|   +..+||.|+.-|.|+|.|+.++++...+        .+|...|+.+.|+|+. ++++++    
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~--------~ghG~sINeik~~p~~~qlvls~----  154 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY--------RGHGGSINEIKFHPDRPQLVLSA----  154 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce--------eccCccchhhhcCCCCCcEEEEe----
Confidence            57888899999864   3458999999999999999998877777        6899999999999976 578888    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc------------
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK------------  364 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~------------  364 (540)
                      +.|..|++|++.+.   .|+..+.+..+|.+.|.++.|++ ++.+|++++.|.+|++|++...+....            
T Consensus       155 SkD~svRlwnI~~~---~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t  230 (385)
T KOG1034|consen  155 SKDHSVRLWNIQTD---VCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT  230 (385)
T ss_pred             cCCceEEEEeccCC---eEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence            99999999999986   88999999999999999999999 999999999999999999984331000            


Q ss_pred             ----------ccee-ecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCee-------------eeecc---Cc
Q 009203          365 ----------PKAL-HRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRAD-------------FKHQI---ES  416 (540)
Q Consensus       365 ----------~~~~-~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~-------------~~~~~---~~  416 (540)
                                +..+ ....|...|-|+.|-  |+++++-+-++.|..|.... ++.+             ..+..   ..
T Consensus       231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i  308 (385)
T KOG1034|consen  231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI  308 (385)
T ss_pred             cCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence                      0111 234577888888885  68999999999999998821 1111             11111   23


Q ss_pred             cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee-eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH-AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      ..+.++++|..   .+|+.|...|.|.+||++....... .+    ........|...+||.||.+|+...+|+.|.-||
T Consensus       309 Wfirf~~d~~~---~~la~gnq~g~v~vwdL~~~ep~~~ttl----~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  309 WFIRFAFDPWQ---KMLALGNQSGKVYVWDLDNNEPPKCTTL----THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             EEEEEeecHHH---HHHhhccCCCcEEEEECCCCCCccCceE----EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            34566677765   7899999999999999998765321 11    1122345788999999999999999999999998


Q ss_pred             cc
Q 009203          496 IR  497 (540)
Q Consensus       496 ~~  497 (540)
                      ..
T Consensus       382 rv  383 (385)
T KOG1034|consen  382 RV  383 (385)
T ss_pred             ee
Confidence            65

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.89  E-value=1.2e-20  Score=161.38  Aligned_cols=259  Identities=18%  Similarity=0.295  Sum_probs=186.7

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCC-------ceEEEEEcCCCCCcc-----eeecccccCCCCCCCCceeEEEec
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALD-------GVIRLWQLQSRGSGA-----SLLSTTDCLSPKHRRWPEDIAWHP  284 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~d-------g~v~iw~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~~~~~~  284 (540)
                      .+|..|.+.|+.++-+|.+.++|+|+..+       -.+.||.+.......     ......+   ..+-+.|.|+.|.|
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ld---teavg~i~cvew~P  133 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLD---TEAVGKINCVEWEP  133 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCC---HHHhCceeeEEEcC
Confidence            56788999999999999878888888653       247899987654321     1111111   23445899999999


Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC-CCCCEEEEEecCCcEEEEecCCCCCcc
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP-WENPCFATGGSDHAVVLWSERDAEDSW  363 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~  363 (540)
                      ++..|++-     .|..|.+|++..+..............+....++-+|+| .+++.+++. .|+++..||+++..+.+
T Consensus       134 ns~klasm-----~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~  207 (370)
T KOG1007|consen  134 NSDKLASM-----DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN  207 (370)
T ss_pred             CCCeeEEe-----ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc
Confidence            99999996     599999999997743211111111122455688889998 467777665 47999999999887644


Q ss_pred             ccceeecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203          364 KPKALHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQL  442 (540)
Q Consensus       364 ~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v  442 (540)
                      .+.    ..|...|..+.|+|+-+ +|++|+.||.|++||.+..+.                                  
T Consensus       208 sI~----dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~----------------------------------  249 (370)
T KOG1007|consen  208 SIE----DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF----------------------------------  249 (370)
T ss_pred             chh----hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc----------------------------------
Confidence            333    55888899999999754 456677777777777774331                                  


Q ss_pred             EEEECCCCcceeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeccCCC---------------------
Q 009203          443 RLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIRYSA---------------------  500 (540)
Q Consensus       443 ~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~---------------------  500 (540)
                                ++      .++.+|...|+++.|+|. ..+|++|+.|..|.+|......                     
T Consensus       250 ----------pv------~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dsee  313 (370)
T KOG1007|consen  250 ----------PV------QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEE  313 (370)
T ss_pred             ----------cc------cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHH
Confidence                      11      255789999999999995 5678899999999999765311                     


Q ss_pred             ------CcccccccccccceeEEEEcCCCC-EEEEEEcCCcEEEE
Q 009203          501 ------NKPSQSIRAHQKRVFKAVWHYSHP-LLISISSDLNIGLH  538 (540)
Q Consensus       501 ------~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~v~iw  538 (540)
                            ...+.++..|.+.|.+++|+.-.+ .+|+-++||.|.|=
T Consensus       314 r~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs  358 (370)
T KOG1007|consen  314 RVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS  358 (370)
T ss_pred             hcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence                  012346678999999999998776 57888999998874

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.7e-21  Score=176.09  Aligned_cols=234  Identities=18%  Similarity=0.265  Sum_probs=183.0

Q ss_pred             ceEEecCCCCeEEEeccc--------hh------------------cccccCceEEEEEecCCCcEEEEEeCCceEEEEE
Q 009203          199 PLVRTSASPATIHCHTSN--------HV------------------SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQ  252 (540)
Q Consensus       199 ~~~~~~~~d~~i~~~~~~--------~~------------------~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~  252 (540)
                      ..+|.|..|..|.||+..        .+                  ..+|++.|.+|+|+-...++||+||.|.+|++||
T Consensus       193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD  272 (463)
T KOG0270|consen  193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD  272 (463)
T ss_pred             ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence            457888889999999774        11                  2379999999999987778999999999999999


Q ss_pred             cCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeE
Q 009203          253 LQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINS  331 (540)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~  331 (540)
                      +.++++..++        ..|.+.|.++.|+|. ..+|++|    +.|++|.+.|.+.....  -..+.    ..+.|-.
T Consensus       273 ~~~g~p~~s~--------~~~~k~Vq~l~wh~~~p~~LLsG----s~D~~V~l~D~R~~~~s--~~~wk----~~g~VEk  334 (463)
T KOG0270|consen  273 VDTGKPKSSI--------THHGKKVQTLEWHPYEPSVLLSG----SYDGTVALKDCRDPSNS--GKEWK----FDGEVEK  334 (463)
T ss_pred             cCCCCcceeh--------hhcCCceeEEEecCCCceEEEec----cccceEEeeeccCcccc--CceEE----eccceEE
Confidence            9999988777        568899999999995 5688898    99999999999853111  11111    1356999


Q ss_pred             EEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCee-
Q 009203          332 IIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRAD-  409 (540)
Q Consensus       332 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~-  409 (540)
                      ++|.|.....+++++.||+|+-+|++....    .......|.+.|.+++++.. -.++++++.|+.|++|++...... 
T Consensus       335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~  410 (463)
T KOG0270|consen  335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGK----PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS  410 (463)
T ss_pred             EEecCCCceeEEEecCCceEEeeecCCCCC----ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence            999997888899999999999999998742    23334569999999999864 467889999999999999765442 


Q ss_pred             -eeeccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          410 -FKHQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       410 -~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                       ..+... +...+++++|+.+  .+++.|+..+.++|||+.+.......
T Consensus       411 v~~~~~~~~rl~c~~~~~~~a--~~la~GG~k~~~~vwd~~~~~~V~ka  457 (463)
T KOG0270|consen  411 VKEHSFKLGRLHCFALDPDVA--FTLAFGGEKAVLRVWDIFTNSPVRKA  457 (463)
T ss_pred             cccccccccceeecccCCCcc--eEEEecCccceEEEeecccChhHHHh
Confidence             222222 2355677777654  48899999999999999877654443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=7.4e-21  Score=165.08  Aligned_cols=243  Identities=19%  Similarity=0.252  Sum_probs=181.7

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC------------ceeEEeecCCCCcccceeEEEEe-------CC
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG------------RACVTFLDDKPHVKGIINSIIFL-------PW  337 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~-------p~  337 (540)
                      ...+.|+|||..|++-    +.|..+.+|++.....            ...++..     ....|...+|-       | 
T Consensus        52 ~kgckWSPDGSciL~~----sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-----eg~tvydy~wYs~M~s~qP-  121 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSL----SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-----EGETVYDYCWYSRMKSDQP-  121 (406)
T ss_pred             hccceeCCCCceEEee----cccCeeeEEecChhhcccCCCCccccccceeEEec-----cCCEEEEEEeeeccccCCC-
Confidence            3469999999999998    9999999999864211            0111121     23557777775       5 


Q ss_pred             CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEEC-CCCCeee------
Q 009203          338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA-GVGRADF------  410 (540)
Q Consensus       338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~------  410 (540)
                      +..++++.+.+.-|++||.-+++.............-....+++|+|||..|++|. ..+|++||+ +.|.-..      
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence            77889999999999999999998633333222111122446899999999998765 579999999 4444311      


Q ss_pred             --eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC-
Q 009203          411 --KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA-  487 (540)
Q Consensus       411 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-  487 (540)
                        .....+-+.+++++|.+.  ..++.|+....+-||.-..+....       .+-+|.+.|+.+.|.++|+.|++|+. 
T Consensus       201 ~~k~gq~giisc~a~sP~~~--~~~a~gsY~q~~giy~~~~~~pl~-------llggh~gGvThL~~~edGn~lfsGaRk  271 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDS--KTLAVGSYGQRVGIYNDDGRRPLQ-------LLGGHGGGVTHLQWCEDGNKLFSGARK  271 (406)
T ss_pred             cccccccceeeeeeccCCCC--cceeeecccceeeeEecCCCCcee-------eecccCCCeeeEEeccCcCeecccccC
Confidence              122245566788999774  389999999999999887766543       34589999999999999999999975 


Q ss_pred             CCcEEEEeccCCCCccccccccccc-ceeEEEE--cCCCCEEEEEEcCCcEEEEeC
Q 009203          488 DPVIHLFDIRYSANKPSQSIRAHQK-RVFKAVW--HYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       488 dg~i~iwd~~~~~~~~~~~~~~h~~-~i~~l~~--s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |-.|..||++.. ..++..+..|.+ .-..|.|  .|+|++|++|+.||.|++||+
T Consensus       272 ~dkIl~WDiR~~-~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl  326 (406)
T KOG2919|consen  272 DDKILCWDIRYS-RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL  326 (406)
T ss_pred             CCeEEEEeehhc-cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence            678999999985 678888888866 3444555  688999999999999999995

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.7e-21  Score=178.18  Aligned_cols=249  Identities=14%  Similarity=0.219  Sum_probs=195.5

Q ss_pred             eEEecCCCCeEEEec--cc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203          200 LVRTSASPATIHCHT--SN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK  272 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~--~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  272 (540)
                      .+++...|..+++|.  +.     .+-+.-.+.-.||+.... ..++++|+..+.|+|||+....+.+.+        .+
T Consensus        49 vvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~l--------kd  119 (673)
T KOG4378|consen   49 VVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFL--------KD  119 (673)
T ss_pred             EEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhc--------cC
Confidence            477778899999993  22     111111124456666553 578999999999999999854433333        58


Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV  352 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  352 (540)
                      |...|+++.++....+||++    +..|.|.|..+.++..   ...+..  .....|.-+.|+|....+|.+++.+|.|.
T Consensus       120 h~stvt~v~YN~~DeyiAsv----s~gGdiiih~~~t~~~---tt~f~~--~sgqsvRll~ys~skr~lL~~asd~G~Vt  190 (673)
T KOG4378|consen  120 HQSTVTYVDYNNTDEYIASV----SDGGDIIIHGTKTKQK---TTTFTI--DSGQSVRLLRYSPSKRFLLSIASDKGAVT  190 (673)
T ss_pred             CcceeEEEEecCCcceeEEe----ccCCcEEEEecccCcc---ccceec--CCCCeEEEeecccccceeeEeeccCCeEE
Confidence            99999999999999999999    9999999999998743   333332  11244678999996677788999999999


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (540)
                      +||+.....    ..-....|..+...++|+|. ..+|++.+.|..|.+||.+............+...++|.+++   .
T Consensus       191 lwDv~g~sp----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G---~  263 (673)
T KOG4378|consen  191 LWDVQGMSP----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECG---T  263 (673)
T ss_pred             EEeccCCCc----ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCc---e
Confidence            999988764    22223569999999999995 467788999999999999987777777778888999999988   7


Q ss_pred             EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC
Q 009203          432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG  479 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  479 (540)
                      +|++|...|.|..||++....++.      ....|...|++++|-|.-
T Consensus       264 ~L~aG~s~G~~i~YD~R~~k~Pv~------v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  264 YLCAGNSKGELIAYDMRSTKAPVA------VRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEEeecCCceEEEEecccCCCCce------EeeecccceeEEEeeecc
Confidence            999999999999999998877665      346788899999997754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=6.3e-21  Score=168.81  Aligned_cols=206  Identities=18%  Similarity=0.261  Sum_probs=157.5

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~  296 (540)
                      .+.+|.+.=++|+|||-..-.|++|..-+.|++|...++.....-.    . ..+|+..|-.++|+|.. ..|++|    
T Consensus       206 t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~----P-f~gH~~SVEDLqWSptE~~vfaSc----  276 (440)
T KOG0302|consen  206 TFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR----P-FTGHTKSVEDLQWSPTEDGVFASC----  276 (440)
T ss_pred             EecccCccceeeecccccccccccCccccceEeeeeccCceeecCc----c-ccccccchhhhccCCccCceEEee----
Confidence            4689999999999999534458888888899999998865321111    1 15799999999999964 488888    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.||+|+|||++.+....++.+ .   .|.+.|+.|.|+. .-.+|++|+.||+++|||++.-+....+..+  ..|..+
T Consensus       277 S~DgsIrIWDiRs~~~~~~~~~-k---Ah~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f--k~Hk~p  349 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPKKAAVST-K---AHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATF--KYHKAP  349 (440)
T ss_pred             ecCceEEEEEecCCCccceeEe-e---ccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeE--EeccCC
Confidence            9999999999998865555555 3   3677899999998 6669999999999999999986643223334  449999


Q ss_pred             eeEEEeccC-CCEEEEEeCCCeEEEEECCCC-------------------CeeeeeccCccEEEEeecCCCCCceEEEEE
Q 009203          377 VMGVAGMQQ-KQIVLSAGADKRIIGFDAGVG-------------------RADFKHQIESKCMSVLPNPCDFNLFMVQTG  436 (540)
Q Consensus       377 v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  436 (540)
                      |+++.|+|. ...|++++.|.+|.+||+...                   +.++.|+....+-.+.|++.-+.  ++++.
T Consensus       350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG--~lvsT  427 (440)
T KOG0302|consen  350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG--LLVST  427 (440)
T ss_pred             eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC--eEEEe
Confidence            999999984 567888899999999998531                   12445555666667777776543  67777


Q ss_pred             cCCCe
Q 009203          437 TPGRQ  441 (540)
Q Consensus       437 ~~dg~  441 (540)
                      +.||.
T Consensus       428 a~dGf  432 (440)
T KOG0302|consen  428 AIDGF  432 (440)
T ss_pred             cccce
Confidence            76664

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.4e-20  Score=164.73  Aligned_cols=284  Identities=11%  Similarity=0.137  Sum_probs=197.5

Q ss_pred             ceEEecCCCCeEEEeccc-----hhcccccCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203          199 PLVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK  272 (540)
Q Consensus       199 ~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  272 (540)
                      ..++.+-+.+.|++|+..     ..+++|...++.++|..+ +...+.+|+.||+|++||+........+...      +
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~------~  114 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT------Q  114 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc------C
Confidence            568888889999999765     458999999999999864 5778999999999999999987765555432      3


Q ss_pred             CC-CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203          273 HR-RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV  351 (540)
Q Consensus       273 h~-~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  351 (540)
                      |. .+..+++.+-.++.++.|+.-...+-.|.+||++..+  +.+..+..  .|.+.|++++|+|.+.++|++|+.||-|
T Consensus       115 ~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q--q~l~~~~e--SH~DDVT~lrFHP~~pnlLlSGSvDGLv  190 (376)
T KOG1188|consen  115 QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ--QLLRQLNE--SHNDDVTQLRFHPSDPNLLLSGSVDGLV  190 (376)
T ss_pred             CCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc--chhhhhhh--hccCcceeEEecCCCCCeEEeecccceE
Confidence            33 4566777776778888874333568889999999762  32333322  4677899999999999999999999999


Q ss_pred             EEEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeeccC-------------cc
Q 009203          352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQIE-------------SK  417 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~  417 (540)
                      .+||+.....--.+.  ..-.|...|.++.|..++ +.|.+-+...+..+|+++.+.+.......             ..
T Consensus       191 nlfD~~~d~EeDaL~--~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY  268 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALL--HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDY  268 (376)
T ss_pred             EeeecCCCcchhhHH--HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhh
Confidence            999998654211111  113377889999998766 45888888999999999988764432221             11


Q ss_pred             EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccC-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203          418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESS-ESQSALINQSWSPDGLYITSGSADPVIHLFDI  496 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~  496 (540)
                      ++.. .+|.+.. ...+.|+.-+...++-+..... .........+. +|..-|.++.|...+.++.+|++||.+.+|..
T Consensus       269 ~I~~-~~~~~~~-~~~l~g~~~n~~~~~~~~~~~s-~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  269 VINE-HSPGDKD-TCALAGTDSNKGTIFPLVDTSS-GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             eeec-ccCCCcc-eEEEeccccCceeEEEeeeccc-ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            1111 1233322 3444444356666655542111 00111112333 36777889999989999999999999999996


Q ss_pred             c
Q 009203          497 R  497 (540)
Q Consensus       497 ~  497 (540)
                      .
T Consensus       346 ~  346 (376)
T KOG1188|consen  346 E  346 (376)
T ss_pred             C
Confidence            4

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=2.1e-20  Score=174.91  Aligned_cols=259  Identities=19%  Similarity=0.248  Sum_probs=194.3

Q ss_pred             CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC
Q 009203          257 GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP  336 (540)
Q Consensus       257 ~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  336 (540)
                      +-++.+.........||++.|.++...|.|.+|++|    +.||+|+||.+.++   .|+..+..    .+.|.||+|+|
T Consensus       383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasG----sdDGtvriWEi~Tg---Rcvr~~~~----d~~I~~vaw~P  451 (733)
T KOG0650|consen  383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASG----SDDGTVRIWEIATG---RCVRTVQF----DSEIRSVAWNP  451 (733)
T ss_pred             hhcCCCcceeeeeEeccCCeEEEEEecCCcceeeec----CCCCcEEEEEeecc---eEEEEEee----cceeEEEEecC
Confidence            333444444444447999999999999999999999    99999999999997   67777664    46799999999


Q ss_pred             CCCCEEEEEecCCcEEEEecCCCCC------------------------ccccc--------eeecccCCcceeEEEecc
Q 009203          337 WENPCFATGGSDHAVVLWSERDAED------------------------SWKPK--------ALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       337 ~~~~~l~s~~~dg~i~iwd~~~~~~------------------------~~~~~--------~~~~~~~~~~v~~l~~s~  384 (540)
                      .....++....+.++.|.+..-|..                        .|...        ......|...|..+.|+.
T Consensus       452 ~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr  531 (733)
T KOG0650|consen  452 LSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR  531 (733)
T ss_pred             CCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence            4333344444444455544322210                        00000        001123778899999999


Q ss_pred             CCCEEEEEeCC---CeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          385 QKQIVLSAGAD---KRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       385 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      .|.+|++...+   ..|.|+++........+ ...+.+.++.|+|..+   ++++++ ...|++||+.......      
T Consensus       532 kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p---~lfVaT-q~~vRiYdL~kqelvK------  601 (733)
T KOG0650|consen  532 KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP---YLFVAT-QRSVRIYDLSKQELVK------  601 (733)
T ss_pred             CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc---eEEEEe-ccceEEEehhHHHHHH------
Confidence            99999997764   46899999876554333 4568889999999874   555544 4689999998644322      


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                       .+......|.+++.+|.|.-|+.|+.|+.+..||++.+ .++..++..|...+++++|++.-.++++|+.||++.|+
T Consensus       602 -kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  602 -KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             -HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence             22334557999999999999999999999999999975 67999999999999999999999999999999999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=4e-20  Score=161.86  Aligned_cols=282  Identities=13%  Similarity=0.107  Sum_probs=198.4

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      ..+|++...|.|++||..+++.+..+        .+|...++.++|..  ....+.+|    +.||+|++||+++.....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f--------k~~~~~~N~vrf~~~ds~h~v~s~----ssDG~Vr~wD~Rs~~e~a  108 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF--------KGPPATTNGVRFISCDSPHGVISC----SSDGTVRLWDIRSQAESA  108 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee--------cCCCCcccceEEecCCCCCeeEEe----ccCCeEEEEEeecchhhh
Confidence            56888889999999999998887777        57777788999977  45678888    999999999999764322


Q ss_pred             eEEeecCCCCcccceeEEEEeCCCCCEEEEEe----cCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEE
Q 009203          315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGG----SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIV  389 (540)
Q Consensus       315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l  389 (540)
                      .+. ...  +...+..+++.+. ..+++++|+    .+..|.+||++..+.   ........|.+.|+++.|+| +.++|
T Consensus       109 ~~~-~~~--~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq---~l~~~~eSH~DDVT~lrFHP~~pnlL  181 (376)
T KOG1188|consen  109 RIS-WTQ--QSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQ---LLRQLNESHNDDVTQLRFHPSDPNLL  181 (376)
T ss_pred             hee-ccC--CCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccc---hhhhhhhhccCcceeEEecCCCCCeE
Confidence            222 222  2235677887776 677788775    367899999998764   22233366999999999999 56899


Q ss_pred             EEEeCCCeEEEEECCCCCe----eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc--
Q 009203          390 LSAGADKRIIGFDAGVGRA----DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES--  463 (540)
Q Consensus       390 ~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~--  463 (540)
                      ++|+.||.|.+||+.....    +........+..+.|...+..  .|.+-+..++..+|+++.+......-......  
T Consensus       182 lSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~yk--rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d  259 (376)
T KOG1188|consen  182 LSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYK--RIMCLTHMETFAIYELEDGSEETWLENPDVSADD  259 (376)
T ss_pred             EeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcc--eEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence            9999999999999986432    345666777888888877653  57777888999999999877433221100000  


Q ss_pred             ---CccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccC----CCCcccccccc-cccceeEEEEcCCCCEEEEEEcCCc
Q 009203          464 ---SESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRY----SANKPSQSIRA-HQKRVFKAVWHYSHPLLISISSDLN  534 (540)
Q Consensus       464 ---~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~----~~~~~~~~~~~-h~~~i~~l~~s~~~~~l~s~~~dg~  534 (540)
                         ......+.......++...+.++. -|...++-+..    ...+.+..+.+ |..-|.++.|...+.++.|||+||.
T Consensus       260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~  339 (376)
T KOG1188|consen  260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL  339 (376)
T ss_pred             HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence               001112222222224455555444 56666665542    11344556665 7778899999988899999999999


Q ss_pred             EEEEe
Q 009203          535 IGLHK  539 (540)
Q Consensus       535 v~iw~  539 (540)
                      +.+|.
T Consensus       340 l~~Wk  344 (376)
T KOG1188|consen  340 LQAWK  344 (376)
T ss_pred             EEEEe
Confidence            99997

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.86  E-value=1e-20  Score=159.80  Aligned_cols=286  Identities=15%  Similarity=0.198  Sum_probs=194.5

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      ++++|.+.|+++.|-. ++ +|.+|..-|.|++|++.+......+..       .|...|+.+.--|+ ..|.+-    +
T Consensus         9 vLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~-------~g~~~it~lq~~p~-d~l~tq----g   74 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLPLIRL-------FGRLFITNLQSIPN-DSLDTQ----G   74 (323)
T ss_pred             Eeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccchhhhh-------hccceeeceeecCC-cchhhc----C
Confidence            4679999999999987 34 599999999999999998775554421       45667888888887 456666    8


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-c-----------EEEEecCCCCCcccc
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-A-----------VVLWSERDAEDSWKP  365 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-~-----------i~iwd~~~~~~~~~~  365 (540)
                      .|+.+.+|++.-+.   .+..      |.-.++++.|.+ .  -+...+... .           +.+-|......   .
T Consensus        75 Rd~~L~lw~ia~s~---~i~i------~Si~~nslgFCr-f--Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq---v  139 (323)
T KOG0322|consen   75 RDPLLILWTIAYSA---FISI------HSIVVNSLGFCR-F--SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ---V  139 (323)
T ss_pred             CCceEEEEEccCcc---eEEE------eeeecccccccc-c--eeccCCCcchhheecCCcccchhhhhccCccce---e
Confidence            99999999998542   1211      122345555544 1  111111111 1           11222211110   1


Q ss_pred             cee--ecccCCcceeEEEecc-CCC--EEEEEeCCCeEEEEECCCCCeeee-----------eccCccEEEEeecCCCCC
Q 009203          366 KAL--HRNLHSSAVMGVAGMQ-QKQ--IVLSAGADKRIIGFDAGVGRADFK-----------HQIESKCMSVLPNPCDFN  429 (540)
Q Consensus       366 ~~~--~~~~~~~~v~~l~~s~-~~~--~l~~~~~dg~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  429 (540)
                      ...  ......+.+++..+.. ++.  ++++|.++|.+.+||+.++..+..           ..+...++++.+.+.-  
T Consensus       140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~--  217 (323)
T KOG0322|consen  140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC--  217 (323)
T ss_pred             EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--
Confidence            111  0122456777777532 333  466788899999999998744322           2234667777777643  


Q ss_pred             ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203          430 LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       430 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  509 (540)
                       ..=++|+.+..+..|++.........   ..+..-..-.|..+.+-||++++|+++.||.|+||+.++  ..++..++.
T Consensus       218 -~rGisgga~dkl~~~Sl~~s~gslq~---~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt--l~pLAVLky  291 (323)
T KOG0322|consen  218 -DRGISGGADDKLVMYSLNHSTGSLQI---RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT--LNPLAVLKY  291 (323)
T ss_pred             -cCCcCCCccccceeeeeccccCcccc---cceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc--CCchhhhhh
Confidence             23456777778889988754211110   111122234688899999999999999999999999998  899999999


Q ss_pred             cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          510 HQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       510 h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |.+.|++++|+|+..++|++|.|++|.+|+|
T Consensus       292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  292 HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=6.3e-21  Score=177.47  Aligned_cols=257  Identities=19%  Similarity=0.182  Sum_probs=186.9

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC-----CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEE
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK-----TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATG  345 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  345 (540)
                      ..|.+.|+.++|++....|+++    +.||.|.+|++..     ......+..+.+   |.++|.|++..+ ++..+++|
T Consensus       291 ~s~~d~ir~l~~~~sep~lit~----sed~~lk~WnLqk~~~s~~~~~epi~tfra---H~gPVl~v~v~~-n~~~~ysg  362 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSEPVLITA----SEDGTLKLWNLQKAKKSAEKDVEPILTFRA---HEGPVLCVVVPS-NGEHCYSG  362 (577)
T ss_pred             ecchhhhhhhhcCCCCCeEEEe----ccccchhhhhhcccCCccccceeeeEEEec---ccCceEEEEecC-CceEEEee
Confidence            5788889999999999999999    9999999999932     122344555554   789999999999 99999999


Q ss_pred             ecCCcEEEEecCCCCC---ccccce--eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee--eeeccCccE
Q 009203          346 GSDHAVVLWSERDAED---SWKPKA--LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD--FKHQIESKC  418 (540)
Q Consensus       346 ~~dg~i~iwd~~~~~~---~~~~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~  418 (540)
                      +.||+|+.|++....-   .+.+..  -...||.+.|+.+++++....|++++.||++++|+.......  ......+..
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P  442 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP  442 (577)
T ss_pred             ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence            9999999996652211   011111  123679999999999999999999999999999999876651  122233444


Q ss_pred             EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc-cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK-QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      .++.+....+  ...++...-+.-.++++....... .++.. .........+..+.++|.+.+.+++..|+.|+++|..
T Consensus       443 lsvd~~ss~~--a~~~~s~~~~~~~~~~~ev~s~~~-~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  443 LSVDRTSSRP--AHSLASFRFGYTSIDDMEVVSDLL-IFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             ceEeeccchh--Hhhhhhcccccccchhhhhhhhee-eccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence            5555544321  122222222333333333333221 11110 0111122457788999999999999999999999999


Q ss_pred             CCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          498 YSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       498 ~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +  +.++.....|...++++++.|+|.+|++++.||.|++|++
T Consensus       520 ~--~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  520 T--GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             c--cccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            8  8999999999999999999999999999999999999975

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.1e-19  Score=157.40  Aligned_cols=269  Identities=15%  Similarity=0.198  Sum_probs=192.4

Q ss_pred             ceEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          199 PLVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       199 ~~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      ..++.|..++.+.+||..     .++.+|..+|+|++||+| |+.|+|++.|..|.+||+..+.+...+.         .
T Consensus        36 ~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~gs~l~rir---------f  105 (405)
T KOG1273|consen   36 DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKGSPLKRIR---------F  105 (405)
T ss_pred             ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC-CCEeeeecCCceeEEEeccCCCceeEEE---------c
Confidence            468899999999999875     679999999999999996 9999999999999999999998777763         3


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      ..+|+.+.|+|.....+.++   -.+..-.+-++..+.. .++. ............+..|.+ .|+++++|...|.+.+
T Consensus       106 ~spv~~~q~hp~k~n~~va~---~~~~sp~vi~~s~~~h-~~Lp-~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv  179 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVAT---IMEESPVVIDFSDPKH-SVLP-KDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLV  179 (405)
T ss_pred             cCccceeeeccccCCeEEEE---EecCCcEEEEecCCce-eecc-CCCccccccccccccccC-CCCEEEEecCcceEEE
Confidence            46799999999654333321   3444445555553211 1111 111111111223346778 9999999999999999


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-------CCeeeeecc-----CccEEEE
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-------GRADFKHQI-----ESKCMSV  421 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~-----~~~~~~~  421 (540)
                      ||..+.+++...+..    ....|..+.|+..|..|+.-+.|+.||.|+++.       ++....+..     ...-.++
T Consensus       180 ~~a~t~e~vas~rit----s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c  255 (405)
T KOG1273|consen  180 YDAETLECVASFRIT----SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC  255 (405)
T ss_pred             Eecchheeeeeeeec----hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence            999998874444332    236789999999999999999999999999862       222211222     2334466


Q ss_pred             eecCCCCCceEEEEEc-CCCeEEEEECCCCcceeeeeccccccCccc-cCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          422 LPNPCDFNLFMVQTGT-PGRQLRLYDIRLRQTEIHAFGWKQESSESQ-SALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       422 ~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      +|+.++   .|+++++ ....++||.-..+.....       +.|.. .....+.|+|-...+++- ..|.++||....
T Consensus       256 cfs~dg---eYv~a~s~~aHaLYIWE~~~GsLVKI-------LhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  256 CFSGDG---EYVCAGSARAHALYIWEKSIGSLVKI-------LHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             eecCCc---cEEEeccccceeEEEEecCCcceeee-------ecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence            777766   4665554 456799999988875432       23333 356788999998888888 789999998875

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=2.7e-19  Score=175.25  Aligned_cols=277  Identities=16%  Similarity=0.182  Sum_probs=199.3

Q ss_pred             CeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEE
Q 009203          208 ATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAW  282 (540)
Q Consensus       208 ~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  282 (540)
                      ..+.+|+..     ...-.-...|+|+.|+|....+||.|..+|.|.+||+..+....  ..........|..+|+.+.|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--PSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--CcccccccccCCcCeEEEEE
Confidence            367788664     12223457899999999989999999999999999998876521  22222222579999999999


Q ss_pred             ecCCC--eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC------CcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          283 HPQGN--SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP------HVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       283 ~~~~~--~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      ..+-.  -|+++    +.||.|..|+++.-........+....      .....+++++|.+.+...|+.|+.+|.|.--
T Consensus       300 ~~~~~~~~f~s~----ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~  375 (555)
T KOG1587|consen  300 LQNEHNTEFFSL----SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG  375 (555)
T ss_pred             eccCCCCceEEE----ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence            76544  48888    889999999887532211111111111      1234589999999899999999999998874


Q ss_pred             ecCCCCCcc----ccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC-CCCeeeeeccC-ccEEEEeecCCCC
Q 009203          355 SERDAEDSW----KPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG-VGRADFKHQIE-SKCMSVLPNPCDF  428 (540)
Q Consensus       355 d~~~~~~~~----~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~  428 (540)
                      +-.......    +. ......|.+.|+++.++|-+..++..+.|.+++||... ...++...... ..+.+++|+|..+
T Consensus       376 ~r~g~~~~~~~~~~~-~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp  454 (555)
T KOG1587|consen  376 CRKGYTPAPEVSYKG-HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP  454 (555)
T ss_pred             eccCCcccccccccc-cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc
Confidence            333322111    11 11234588999999999987766666669999999988 66666655544 4488999999876


Q ss_pred             CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          429 NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       429 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                        ..++++..||.+.+||+........     ....-+....+.+.|++.|+.|++|...|.+++|++..
T Consensus       455 --avF~~~d~~G~l~iWDLl~~~~~Pv-----~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  455 --AVFATVDGDGNLDIWDLLQDDEEPV-----LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             --eEEEEEcCCCceehhhhhccccCCc-----ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence              4899999999999999975442111     12222355677889999999999999999999999963

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.85  E-value=4.5e-18  Score=163.36  Aligned_cols=282  Identities=9%  Similarity=0.070  Sum_probs=177.1

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT  317 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~  317 (540)
                      ++++...++.|.+|++.+...+. +....     .+......++++|++++|+++.   ..++.|.+|+++.........
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~-~~~~~-----~~~~~~~~l~~spd~~~lyv~~---~~~~~i~~~~~~~~g~l~~~~   74 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALT-LLQVV-----DVPGQVQPMVISPDKRHLYVGV---RPEFRVLSYRIADDGALTFAA   74 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCcee-eeeEE-----ecCCCCccEEECCCCCEEEEEE---CCCCcEEEEEECCCCceEEee
Confidence            34455778999999996432211 21111     1224466799999999887762   457899999997321111222


Q ss_pred             eecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CC
Q 009203          318 FLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-AD  395 (540)
Q Consensus       318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d  395 (540)
                      ...    ..+....++|+| ++++|++++ .++.|.+|++........  ......+...+.+++++|+|+++++++ .+
T Consensus        75 ~~~----~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~  147 (330)
T PRK11028         75 ESP----LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVA--PIQIIEGLEGCHSANIDPDNRTLWVPCLKE  147 (330)
T ss_pred             eec----CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCC--ceeeccCCCcccEeEeCCCCCEEEEeeCCC
Confidence            222    123467899999 888877765 478999999974321111  111111234567889999999886655 56


Q ss_pred             CeEEEEECCCCCeee-------eeccCccEEEEeecCCCCCceEEEEEcC-CCeEEEEECCCC--cc-eeeeecc-cccc
Q 009203          396 KRIIGFDAGVGRADF-------KHQIESKCMSVLPNPCDFNLFMVQTGTP-GRQLRLYDIRLR--QT-EIHAFGW-KQES  463 (540)
Q Consensus       396 g~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~--~~-~~~~~~~-~~~~  463 (540)
                      +.|.+||+.+...+.       ....+.....+.++|++   .++++... ++.|.+||+...  .. ....+.. ....
T Consensus       148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg---~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~  224 (330)
T PRK11028        148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQ---QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF  224 (330)
T ss_pred             CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCC---CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence            899999997633221       12234456678999987   56655554 899999999742  21 1111110 0001


Q ss_pred             CccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCCCCc--ccccccccccceeEEEEcCCCCEEEEEEc-CCcEEEEe
Q 009203          464 SESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYSANK--PSQSIRAHQKRVFKAVWHYSHPLLISISS-DLNIGLHK  539 (540)
Q Consensus       464 ~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~~~--~~~~~~~h~~~i~~l~~s~~~~~l~s~~~-dg~v~iw~  539 (540)
                       .+......+.|+|+|++|+++.. ++.|.+|+++.....  .+..... ......+.|+|||++|++++. +++|.+|+
T Consensus       225 -~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        225 -SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             -CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence             11223456899999999998854 789999999753111  1222211 124568999999999887765 89999996


Q ss_pred             C
Q 009203          540 I  540 (540)
Q Consensus       540 l  540 (540)
                      +
T Consensus       303 ~  303 (330)
T PRK11028        303 I  303 (330)
T ss_pred             E
Confidence            4

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=1.3e-18  Score=170.45  Aligned_cols=271  Identities=12%  Similarity=0.157  Sum_probs=191.7

Q ss_pred             ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCC--ceeEEeecCC
Q 009203          246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKG--RACVTFLDDK  322 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~  322 (540)
                      +.+.||++..........        .-...|.+++|+|... +++.|    ..+|.|.+||+..+..  ...+..... 
T Consensus       222 ~~~~vW~~~~p~~Pe~~~--------~~~s~v~~~~f~p~~p~ll~gG----~y~GqV~lWD~~~~~~~~~s~ls~~~~-  288 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL--------ESPSEVTCLKFCPFDPNLLAGG----CYNGQVVLWDLRKGSDTPPSGLSALEV-  288 (555)
T ss_pred             ceEEEEecCCCCCceEEE--------ecCCceeEEEeccCCcceEEee----ccCceEEEEEccCCCCCCCcccccccc-
Confidence            478999998763222221        2235699999999655 55555    9999999999997754  222332222 


Q ss_pred             CCcccceeEEEEeCCCC--CEEEEEecCCcEEEEecCCCCCccccceeec-------ccCCcceeEEEecc-CCCEEEEE
Q 009203          323 PHVKGIINSIIFLPWEN--PCFATGGSDHAVVLWSERDAEDSWKPKALHR-------NLHSSAVMGVAGMQ-QKQIVLSA  392 (540)
Q Consensus       323 ~~~~~~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~v~~l~~s~-~~~~l~~~  392 (540)
                       .|..+++.+.|.. +.  .-|++++.||.|..|+++.-...........       ......++++.|.+ +-+.+++|
T Consensus       289 -sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG  366 (555)
T KOG1587|consen  289 -SHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG  366 (555)
T ss_pred             -cCCcCeEEEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE
Confidence             4788999999976 43  3499999999999998876443111111111       11234688999976 45778999


Q ss_pred             eCCCeEEEEECC---CCC-e----e-eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc
Q 009203          393 GADKRIIGFDAG---VGR-A----D-FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES  463 (540)
Q Consensus       393 ~~dg~i~iwd~~---~~~-~----~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  463 (540)
                      +.+|.|..-+-.   ... .    . ....+.+.+.++.++|....  .+.+++ |.+|+||.......++.      .+
T Consensus       367 Te~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k--~fls~g-DW~vriWs~~~~~~Pl~------~~  437 (555)
T KOG1587|consen  367 TEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPK--NFLSVG-DWTVRIWSEDVIASPLL------SL  437 (555)
T ss_pred             cCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccc--eeeeec-cceeEeccccCCCCcch------hh
Confidence            999998773332   222 1    1 11334577889999998753  444444 99999999884443333      22


Q ss_pred             CccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          464 SESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       464 ~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ..+...|++++|||-. ..++++..||.|.|||+......++.+...+....+.+.|++.|+.|+.|...|++.+|++
T Consensus       438 ~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  438 DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            3455679999999965 5677888899999999997666788887777777888999999999999999999999986

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=2.8e-19  Score=160.06  Aligned_cols=280  Identities=18%  Similarity=0.206  Sum_probs=189.2

Q ss_pred             ceEEecCCCCeEEEeccc--------------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC------
Q 009203          199 PLVRTSASPATIHCHTSN--------------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS------  258 (540)
Q Consensus       199 ~~~~~~~~d~~i~~~~~~--------------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~------  258 (540)
                      ..+++++.|..|++|...              ..|..|...|+++.|+|+ |.+||+|+.+|.|.+|....-..      
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~d~e  105 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDADTE  105 (434)
T ss_pred             cceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccccch
Confidence            378899999999999322              348899999999999995 99999999999999998762110      


Q ss_pred             ----cceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE
Q 009203          259 ----GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF  334 (540)
Q Consensus       259 ----~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  334 (540)
                          ......  .....+|...|..++|+|++.+++++    +.|..+++||+..|   .....+..   |...|..++|
T Consensus       106 ~~~~ke~w~v--~k~lr~h~~diydL~Ws~d~~~l~s~----s~dns~~l~Dv~~G---~l~~~~~d---h~~yvqgvaw  173 (434)
T KOG1009|consen  106 ADLNKEKWVV--KKVLRGHRDDIYDLAWSPDSNFLVSG----SVDNSVRLWDVHAG---QLLAILDD---HEHYVQGVAW  173 (434)
T ss_pred             hhhCccceEE--EEEecccccchhhhhccCCCceeeee----eccceEEEEEeccc---eeEeeccc---cccccceeec
Confidence                000000  01115799999999999999999999    99999999999987   44666665   6778999999


Q ss_pred             eCCCCCEEEEEecCCcEEEEecCCCCCccccce---ee-----------cccCC----cceeEEEeccCCCEEEEEeC--
Q 009203          335 LPWENPCFATGGSDHAVVLWSERDAEDSWKPKA---LH-----------RNLHS----SAVMGVAGMQQKQIVLSAGA--  394 (540)
Q Consensus       335 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~-----------~~~~~----~~v~~l~~s~~~~~l~~~~~--  394 (540)
                      .| .++++++-+.|...+.+++...+.......   ..           +..|.    .-...++|+|+|.++++...  
T Consensus       174 Dp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~  252 (434)
T KOG1009|consen  174 DP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF  252 (434)
T ss_pred             ch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence            99 999999999888777766654332111110   00           00021    22346789999999987543  


Q ss_pred             --CCe-----EEEEECCCCC-eeee-eccCccEEEEeecCC-------CCC-------ceEEEEEcCCCeEEEEECCCCc
Q 009203          395 --DKR-----IIGFDAGVGR-ADFK-HQIESKCMSVLPNPC-------DFN-------LFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       395 --dg~-----i~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~-------~~~-------~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                        ++.     .++|+-...+ +... .........+.++|-       ...       .+++++-...+.|++||..+..
T Consensus       253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~  332 (434)
T KOG1009|consen  253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLE  332 (434)
T ss_pred             eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccccc
Confidence              222     3444433211 1111 111223333333331       100       0233333445689999998766


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .....      ..-|-..++.++|++||.+|+..+.||...+--++.
T Consensus       333 P~~~v------~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  333 PLAVV------DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP  373 (434)
T ss_pred             ceEEE------eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence            43332      234777999999999999999999999988877775

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1.9e-20  Score=174.31  Aligned_cols=276  Identities=17%  Similarity=0.180  Sum_probs=193.0

Q ss_pred             EEEeccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeE
Q 009203          210 IHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSL  289 (540)
Q Consensus       210 i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l  289 (540)
                      -+-|+...++..|.+.|+.++|.| ....|++++.||++++|++.....-............+|.++|.|+++.+++..+
T Consensus       281 ~k~w~ik~tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~  359 (577)
T KOG0642|consen  281 TKKWNIKFTLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHC  359 (577)
T ss_pred             heecceeeeeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEE
Confidence            344776677889999999999999 5889999999999999999432111100000011116999999999999999999


Q ss_pred             EEEeecCCCCCeEEEEecCCCCC-------ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCc
Q 009203          290 FSAHTADSGDSQISVLNLNKTKG-------RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDS  362 (540)
Q Consensus       290 ~s~~~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  362 (540)
                      ++|    +.||+|+.|++.....       ......+.   +|.+.|+.+++++ ....|++++.||++++|+...... 
T Consensus       360 ysg----g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~---Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-  430 (577)
T KOG0642|consen  360 YSG----GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL---GHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-  430 (577)
T ss_pred             Eee----ccCceeeeeccCCCCCcccccCcchhcccee---ccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-
Confidence            999    9999999997653211       11122233   4788999999999 888899999999999999987653 


Q ss_pred             cccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeecc--------CccEEEEeecCCCCCceEE
Q 009203          363 WKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQI--------ESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       363 ~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l  433 (540)
                         .++......+...++.+-... .+.++...-+.--++++.....+..+..        ...+..+.++|..   .+.
T Consensus       431 ---~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~---~~~  504 (577)
T KOG0642|consen  431 ---CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA---DIT  504 (577)
T ss_pred             ---cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC---Cee
Confidence               222222233445666664322 2222222233333444444333332211        2345567777766   488


Q ss_pred             EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      +++..|+.|+++|..++....       ....|...++++++.|+|.+|++|+.|+.+++|.+..  ..++.....|
T Consensus       505 ~~~hed~~Ir~~dn~~~~~l~-------s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~--k~~~~es~~~  572 (577)
T KOG0642|consen  505 FTAHEDRSIRFFDNKTGKILH-------SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV--KTCVLESTAH  572 (577)
T ss_pred             EecccCCceecccccccccch-------heeeccceecceeecCCCceEEeecCCceeehhhccc--hheeeccccc
Confidence            999999999999999887544       3356788999999999999999999999999999986  4455444444

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=1.8e-19  Score=160.56  Aligned_cols=221  Identities=17%  Similarity=0.245  Sum_probs=168.2

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~  296 (540)
                      ...||+++|..++|+|.+...||+||.|.+|.||.+..+.....+....... .||...|--++|+|.. +.|+++    
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA~NVLlsa----  150 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTAPNVLLSA----  150 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccchhhHhhc----
Confidence            4689999999999999989999999999999999998876655444222222 6999999999999964 588888    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc-
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS-  375 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-  375 (540)
                      +.|.+|.+||+.++.   .+..+.    |.+.|+++.|+. +|.+|++.+.|..|+|||.++++.+...     .+|.+ 
T Consensus       151 g~Dn~v~iWnv~tge---ali~l~----hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~-----~~heG~  217 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGE---ALITLD----HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEG-----VAHEGA  217 (472)
T ss_pred             cCCceEEEEeccCCc---eeeecC----CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeec-----ccccCC
Confidence            999999999999983   233343    678999999999 9999999999999999999999853222     33443 


Q ss_pred             ceeEEEeccCCCEEEEEe---CCCeEEEEECCCCCe---eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203          376 AVMGVAGMQQKQIVLSAG---ADKRIIGFDAGVGRA---DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL  449 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  449 (540)
                      .-..+.|-.+|..+-+|-   .+..+-+||..+-..   .........++--.++++..  .+.++|-.|+.|+.|.+..
T Consensus       218 k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~--ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  218 KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTS--IVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             CcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCC--EEEEEecCCcceEEEEecC
Confidence            345566777888544443   367899999877443   22344445555556666652  4567788899999999998


Q ss_pred             Ccceeeeec
Q 009203          450 RQTEIHAFG  458 (540)
Q Consensus       450 ~~~~~~~~~  458 (540)
                      ....++.+.
T Consensus       296 d~P~~hyln  304 (472)
T KOG0303|consen  296 EPPFVHYLN  304 (472)
T ss_pred             CCceeEEec
Confidence            776565543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5.4e-20  Score=185.07  Aligned_cols=232  Identities=20%  Similarity=0.290  Sum_probs=185.0

Q ss_pred             eEEecCCCCeEEEeccch-----------hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccccc
Q 009203          200 LVRTSASPATIHCHTSNH-----------VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDC  268 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~~-----------~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~  268 (540)
                      .++-+..|+.|.+|+...           ....|++.|..+.|++..+++||+|+.||.|.|||+...+...++..    
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~----  157 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS----  157 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC----
Confidence            578888999999997653           25789999999999998788999999999999999998665444421    


Q ss_pred             CCCCCCCCceeEEEecCC-CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203          269 LSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS  347 (540)
Q Consensus       269 ~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  347 (540)
                        ..-.+.|.+++|+..- ..|+++    +.+|.+.|||++..   +.+..+..... ...+..++|+|++...|++++.
T Consensus       158 --~~~~~eI~~lsWNrkvqhILAS~----s~sg~~~iWDlr~~---~pii~ls~~~~-~~~~S~l~WhP~~aTql~~As~  227 (1049)
T KOG0307|consen  158 --QAPPSEIKCLSWNRKVSHILASG----SPSGRAVIWDLRKK---KPIIKLSDTPG-RMHCSVLAWHPDHATQLLVASG  227 (1049)
T ss_pred             --CCCcccceEeccchhhhHHhhcc----CCCCCceeccccCC---CcccccccCCC-ccceeeeeeCCCCceeeeeecC
Confidence              2345779999998754 467777    89999999999965   22333333221 2458899999977888888877


Q ss_pred             CC---cEEEEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEe
Q 009203          348 DH---AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVL  422 (540)
Q Consensus       348 dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~  422 (540)
                      |.   .|.+||++.....  .+.+  .+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+..... ...+..+.
T Consensus       228 dd~~PviqlWDlR~assP--~k~~--~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~  303 (1049)
T KOG0307|consen  228 DDSAPVIQLWDLRFASSP--LKIL--EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ  303 (1049)
T ss_pred             CCCCceeEeecccccCCc--hhhh--cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence            64   5999999876531  1222  5699999999999866 8999999999999999999999877554 57788999


Q ss_pred             ecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          423 PNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       423 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      |+|.++.  .+++++.||.|.||.+....
T Consensus       304 w~pr~P~--~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  304 WCPRNPS--VMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ecCCCcc--hhhhheeccceeeeeeecCC
Confidence            9998874  78999999999999998655

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.84  E-value=1.6e-18  Score=174.98  Aligned_cols=313  Identities=15%  Similarity=0.178  Sum_probs=210.7

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCc-ceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSG-ASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      .+..|...|..++.+++.+.+++|||.||+|++|+...-... ......  .....-...+.++.+.+.++.+|.+    
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~--ltys~~~sr~~~vt~~~~~~~~Av~---- 1116 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSE--LTYSPEGSRVEKVTMCGNGDQFAVS---- 1116 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeee--EEEeccCCceEEEEeccCCCeEEEE----
Confidence            367889999999999876799999999999999998754322 111110  0001234668899999999999999    


Q ss_pred             CCCCeEEEEecCCCCCce--eEEeecCCCCccccee-EEEEeCCCCC-EEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203          297 SGDSQISVLNLNKTKGRA--CVTFLDDKPHVKGIIN-SIIFLPWENP-CFATGGSDHAVVLWSERDAEDSWKPKALHRNL  372 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~v~-~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  372 (540)
                      +.||.|.+.+++......  +........+..+.+. .-+|....+. .++.+..-+.|..||++.....|..+.   ..
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~---~~ 1193 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN---QL 1193 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc---Cc
Confidence            999999999998621111  1111111111223333 3345443445 788888889999999999877555443   33


Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCCCCCc-eEEEEEc-CCCeEEEEECC
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPCDFNL-FMVQTGT-PGRQLRLYDIR  448 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~l~~~~-~dg~v~i~d~~  448 (540)
                      ..+.|++++.+|.+++++.|+..|.+.+||++-+.++...  .....+..+..+|..+.. ..+.+++ ..+.|.+|++.
T Consensus      1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred             cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence            5578999999999999999999999999999988877654  344566666666654422 2344444 67889999999


Q ss_pred             CCcceeeeecc-c-------ccc----CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc--------------
Q 009203          449 LRQTEIHAFGW-K-------QES----SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK--------------  502 (540)
Q Consensus       449 ~~~~~~~~~~~-~-------~~~----~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~--------------  502 (540)
                      ++.+....+.. .       ...    +.+.-......+...+.++.+|+.|..|+.||...+...              
T Consensus      1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred             cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccccc
Confidence            88654433321 0       000    012222233344445678999999999999998742111              


Q ss_pred             -------------ccc---------------------------cccccccceeEEEEcCCC-CEEEEEEcCCcEEEEe
Q 009203          503 -------------PSQ---------------------------SIRAHQKRVFKAVWHYSH-PLLISISSDLNIGLHK  539 (540)
Q Consensus       503 -------------~~~---------------------------~~~~h~~~i~~l~~s~~~-~~l~s~~~dg~v~iw~  539 (540)
                                   .+.                           .-..|..+|++|++.... .+|++++.||.|+||.
T Consensus      1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                         000                           001477789999887654 5899999999999995

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.84  E-value=1.8e-20  Score=181.52  Aligned_cols=279  Identities=15%  Similarity=0.139  Sum_probs=211.4

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +.||.+.|+|+.|.- .|+++++|+.|..|+||..++..+....        .||.+.|+.++.+.+..+++++    +.
T Consensus       186 LlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~--------rGhs~ditdlavs~~n~~iaaa----S~  252 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASC--------RGHSGDITDLAVSSNNTMIAAA----SN  252 (1113)
T ss_pred             HHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccC--------CCCccccchhccchhhhhhhhc----cc
Confidence            789999999999998 5999999999999999999998887777        7999999999999998899999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      |..|++|.+..+   ..+..+.+   |.+.|++++|+|     ..+.+.||++++||.+-.-..+.+.... ......+.
T Consensus       253 D~vIrvWrl~~~---~pvsvLrg---htgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~-~~~~~~~~  320 (1113)
T KOG0644|consen  253 DKVIRVWRLPDG---APVSVLRG---HTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLK-FTEKDLVD  320 (1113)
T ss_pred             CceEEEEecCCC---chHHHHhc---cccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCC-ccccccee
Confidence            999999999987   55777775   788999999999     4478899999999998222222222221 12335677


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG  458 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  458 (540)
                      ++.|..++.-+++++.|+.-..|.+.......     ....-+..+.+- + .+.+++-.+..+.+|++.++...-    
T Consensus       321 s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~-~-~~~~~ar~~~~~~vwnl~~g~l~H----  389 (1113)
T KOG0644|consen  321 SILFENNGDRFLTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDL-S-SIVVTARNDHRLCVWNLYTGQLLH----  389 (1113)
T ss_pred             eeeccccccccccccCCcccccchhhHhhhhc-----cceEEEeccccc-c-ccceeeeeeeEeeeeecccchhhh----
Confidence            78888888999999999998888765321100     000000011110 0 366677778889999998876422    


Q ss_pred             cccccCccccCeEEEEEcCCCCE-EEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203          459 WKQESSESQSALINQSWSPDGLY-ITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGL  537 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~i  537 (540)
                         .+.+|...+..+.++|-... ..+++.||...|||+-.  +.++.......+.+...+||+||..++....-|.+.|
T Consensus       390 ---~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e--g~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i  464 (1113)
T KOG0644|consen  390 ---NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE--GIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYI  464 (1113)
T ss_pred             ---hhcccccceeeeeecCCCcHhhhhccCCCceEeeeccc--CCcceeeecccceeeccccCCCCceEecCCCCCceEE
Confidence               45678889999999996554 55889999999999987  5555444322446788899999998888777788877


Q ss_pred             E
Q 009203          538 H  538 (540)
Q Consensus       538 w  538 (540)
                      .
T Consensus       465 ~  465 (1113)
T KOG0644|consen  465 L  465 (1113)
T ss_pred             e
Confidence            5

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=4.1e-17  Score=163.19  Aligned_cols=290  Identities=24%  Similarity=0.378  Sum_probs=213.7

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC-CcceeecccccCCCCCCCCceeEEE-ecCCC-eEEEEee
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG-SGASLLSTTDCLSPKHRRWPEDIAW-HPQGN-SLFSAHT  294 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~-~~~~~-~l~s~~~  294 (540)
                      .+.+|...|.++.|.+. +..++.++.|+.+.+|+..... ....+..       .+...+..+.+ ++++. .++..  
T Consensus        60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--  129 (466)
T COG2319          60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEG-------LHDSSVSKLALSSPDGNSILLAS--  129 (466)
T ss_pred             eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEec-------cCCCceeeEEEECCCcceEEecc--
Confidence            35689999999999994 8889999999999999998876 3333321       11135667777 78787 45544  


Q ss_pred             cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeecccC
Q 009203          295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHRNLH  373 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~  373 (540)
                       +..++.+.+||....  ......+..   |...|..++|+| ++..+++++. |+.+++|++..+..   ...+  .+|
T Consensus       130 -~~~d~~~~~~~~~~~--~~~~~~~~~---~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~  197 (466)
T COG2319         130 -SSLDGTVKLWDLSTP--GKLIRTLEG---HSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKP---LSTL--AGH  197 (466)
T ss_pred             -CCCCccEEEEEecCC--CeEEEEEec---CcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCce---EEee--ccC
Confidence             144999999999861  133444443   567799999999 8888888885 99999999998543   2222  448


Q ss_pred             CcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeee-eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          374 SSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADF-KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       374 ~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      ...|.+++|+|++. .+++++.|+.|++||...+.... ............|++.+   .++++++.|+.+++|++....
T Consensus       198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCC---CEEEEecCCCcEEEeeecCCC
Confidence            99999999999998 55555899999999988777665 23332222111677776   477799999999999999766


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc--ccccceeEEEEcCCCCEEEEE
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR--AHQKRVFKAVWHYSHPLLISI  529 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~i~~l~~s~~~~~l~s~  529 (540)
                      .....      ..+|...+.++.|+|++..+++++.|+.+.+|+...  ........  .|...+..+.|.+++..++.+
T Consensus       275 ~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         275 SLLRT------LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET--GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             cEEEE------EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC--CceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence            52221      146788999999999999998899999999998886  33333333  777789999994332455555


Q ss_pred             -EcCCcEEEEeC
Q 009203          530 -SSDLNIGLHKI  540 (540)
Q Consensus       530 -~~dg~v~iw~l  540 (540)
                       ..|+.+.+|++
T Consensus       347 ~~~d~~~~~~~~  358 (466)
T COG2319         347 GSDDGTIRLWDL  358 (466)
T ss_pred             ecCCCcEEeeec
Confidence             68899999874

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=2.6e-18  Score=170.89  Aligned_cols=303  Identities=16%  Similarity=0.163  Sum_probs=209.1

Q ss_pred             EEEeccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCC
Q 009203          210 IHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGN  287 (540)
Q Consensus       210 i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~  287 (540)
                      |..|+. +...+...+-..+.|+|. ...++++...-.|+|||.+.++....+....     .-...|+.+.+-.  |..
T Consensus      1052 i~~W~~-~~~~~n~~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1052 IGNWDQ-KFMTGNNQPPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred             ccchHH-HHHhcCCCCCceeeecCC-CceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccchh
Confidence            344442 234555567788899996 7778888777799999999988766554432     2346689999865  345


Q ss_pred             eEEEEeecCCCCCeEEEEecC-CC-CCceeEEeecCCC----CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC
Q 009203          288 SLFSAHTADSGDSQISVLNLN-KT-KGRACVTFLDDKP----HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED  361 (540)
Q Consensus       288 ~l~s~~~~~~~d~~i~vwd~~-~~-~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  361 (540)
                      ++++|    +.||.|+||+-- .. +..+.++.+.+..    ...+.-.-+.|....|.++++| .-..|+|||......
T Consensus      1125 LlLta----s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1125 LLLTA----SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQV 1199 (1387)
T ss_pred             heeee----ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEeccccee
Confidence            88888    999999999643 22 3334444433221    1112224467877455555554 468999999988764


Q ss_pred             ccccceeecccCCcceeEEEec-cCCCEEEEEeCCCeEEEEECCCCCe---eee---eccCccEEEEeecCCCCCceEEE
Q 009203          362 SWKPKALHRNLHSSAVMGVAGM-QQKQIVLSAGADKRIIGFDAGVGRA---DFK---HQIESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       362 ~~~~~~~~~~~~~~~v~~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~l~  434 (540)
                      .....    .+....|+++.-+ ..|+.+++|..||.|++||.+....   +..   +.....++.+.+.+.+..  -|+
T Consensus      1200 ~~diP----~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~--elv 1273 (1387)
T KOG1517|consen 1200 VADIP----YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG--ELV 1273 (1387)
T ss_pred             Eeecc----cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc--cee
Confidence            22121    2244567777654 3579999999999999999987443   211   333334788888776642  699


Q ss_pred             EEcCCCeEEEEECCCCcceeeeeccccccCcc---ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSES---QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-  510 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-  510 (540)
                      +|+.+|.|++||++.... ...+    ....|   .+.++++..+++...+|+|+. +.|.||++.   ++.+..++.+ 
T Consensus      1274 Sgs~~G~I~~~DlR~~~~-e~~~----~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~---G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSK-ETFL----TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS---GEQLNIIKYNP 1344 (1387)
T ss_pred             eeccCCeEEEEecccCcc-cccc----eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC---hhhhcccccCc
Confidence            999999999999997421 1111    11122   225899999999999999998 999999998   4555554432 


Q ss_pred             ------ccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          511 ------QKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       511 ------~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                            .+.+.+++|+|---+||+|+.|.+|.||.
T Consensus      1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             ccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence                  34689999999999999999999999984

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=5.1e-19  Score=167.60  Aligned_cols=250  Identities=13%  Similarity=0.159  Sum_probs=188.6

Q ss_pred             CCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEE
Q 009203          207 PATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA  281 (540)
Q Consensus       207 d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  281 (540)
                      +..+.+||..     +.++||++.|+|++|+.| |..+|+|+.|..|.+|+-.-..   .+.       -.|.+.|.|+.
T Consensus        32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG---~Lk-------YSH~D~IQCMs  100 (1081)
T KOG1538|consen   32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEG---ILK-------YSHNDAIQCMS  100 (1081)
T ss_pred             CCEEEEEeCCCcccccccccccceEEEEEEccC-CceeccCCCceeEEEecccccc---eee-------eccCCeeeEee
Confidence            4455666543     678999999999999996 9999999999999999865432   221       37999999999


Q ss_pred             EecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC
Q 009203          282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED  361 (540)
Q Consensus       282 ~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  361 (540)
                      |+|-...|+++     .-...-+|.....    .+....    ....|.+++|.. ||.+|+.|-.+|+|.|-+-...+.
T Consensus       101 FNP~~h~LasC-----sLsdFglWS~~qK----~V~K~k----ss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek  166 (1081)
T KOG1538|consen  101 FNPITHQLASC-----SLSDFGLWSPEQK----SVSKHK----SSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEK  166 (1081)
T ss_pred             cCchHHHhhhc-----chhhccccChhhh----hHHhhh----hheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcc
Confidence            99999999997     3345678877642    122211    245689999999 999999999999999986544332


Q ss_pred             ccccceeec-ccCCcceeEEEeccCC-----CEEEEEeCCCeEEEEECCCCCeee-eeccCccEEEEeecCCCCCceEEE
Q 009203          362 SWKPKALHR-NLHSSAVMGVAGMQQK-----QIVLSAGADKRIIGFDAGVGRADF-KHQIESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       362 ~~~~~~~~~-~~~~~~v~~l~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~  434 (540)
                          ..+.+ .+..++|.+++|+|..     ..+++.....++.+|.+. |+.+- ....+-...++.+.+.+   .+++
T Consensus       167 ----~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NG---Ey~L  238 (1081)
T KOG1538|consen  167 ----VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNG---EYIL  238 (1081)
T ss_pred             ----eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCC---cEEE
Confidence                23333 4467899999999853     578888888889988887 44433 33444455566666666   6999


Q ss_pred             EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      .|+.|+.+.+|-...-  .+.      +......+|+.++..|++++++.|+.||+|..|++-
T Consensus       239 iGGsdk~L~~fTR~Gv--rLG------Tvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  239 LGGSDKQLSLFTRDGV--RLG------TVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EccCCCceEEEeecCe--EEe------eccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            9999999999976521  111      233456799999999999999999999999999886

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.5e-19  Score=163.01  Aligned_cols=301  Identities=14%  Similarity=0.114  Sum_probs=226.5

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC--CCeEEEEee
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHT  294 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~  294 (540)
                      ..|.+|.+.|+.|.|+.. |..|++|+.|..|.+||...+.....+.       .||...|....|-|.  ...|+++  
T Consensus       136 ~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-------SGH~~NvfQaKFiP~s~d~ti~~~--  205 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFE-------SGHCNNVFQAKFIPFSGDRTIVTS--  205 (559)
T ss_pred             hcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccc-------cccccchhhhhccCCCCCcCceec--
Confidence            457899999999999995 9999999999999999999877655543       589999988899884  4578888  


Q ss_pred             cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203          295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                        +.||.|++=.+...........+   ..|.++|.-++.-|.+..-|.+++.|+.+.-+|++.+.......  ....+.
T Consensus       206 --s~dgqvr~s~i~~t~~~e~t~rl---~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--cr~~~~  278 (559)
T KOG1334|consen  206 --SRDGQVRVSEILETGYVENTKRL---APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--CREADE  278 (559)
T ss_pred             --cccCceeeeeeccccceecceec---ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--eeccCC
Confidence              99999999877654222222222   24788999999999888899999999999999999876532222  122233


Q ss_pred             c---ceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCee------e-------eeccCccEEEEeecCCCCCceEEEEEc
Q 009203          375 S---AVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRAD------F-------KHQIESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       375 ~---~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      .   ...+++..|.. +.+++++.|-.+++||.+.-...      .       .......+.++.++.++   .-+++..
T Consensus       279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~---sElLaSY  355 (559)
T KOG1334|consen  279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG---SELLASY  355 (559)
T ss_pred             ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc---cceeeee
Confidence            3   56788888854 48899999999999998752211      1       11335677888888665   3466667


Q ss_pred             CCCeEEEEECCCCcc--eee----eeccccccCccccC--eEEEEE-cCCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203          438 PGRQLRLYDIRLRQT--EIH----AFGWKQESSESQSA--LINQSW-SPDGLYITSGSADPVIHLFDIRYSANKPSQSIR  508 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~--~~~----~~~~~~~~~~~~~~--v~~~~~-sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  508 (540)
                      .|-.|++|.-..+..  +..    ..-.+...++|.+.  |-++-| -|...|+++|+.-|.|.||+-.+  ++.+..+.
T Consensus       356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t--~eii~~Me  433 (559)
T KOG1334|consen  356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT--GEIIRFME  433 (559)
T ss_pred             cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch--hHHHHHhh
Confidence            788899995443221  000    00112235677653  566654 68889999999999999999998  78888888


Q ss_pred             ccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          509 AHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       509 ~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      +...-|+||.=+|--.+||++|-|.-|+||-
T Consensus       434 gDr~VVNCLEpHP~~PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  434 GDRHVVNCLEPHPHLPVLASSGIDHDVKIWT  464 (559)
T ss_pred             cccceEeccCCCCCCchhhccCCccceeeec
Confidence            8777899999999999999999999999994

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2e-17  Score=138.27  Aligned_cols=282  Identities=17%  Similarity=0.190  Sum_probs=188.3

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccc-c-cCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTT-D-CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~-~-~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      ..|.+-+|+| .+++|+.|..+|.|.+..+.+........... . ....+|.++|+.++|+  ..+|+++     .||.
T Consensus        11 ~tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-----gdG~   82 (325)
T KOG0649|consen   11 NTVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-----GDGL   82 (325)
T ss_pred             HHHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-----cCce
Confidence            3566778999 69999999999999999886432111110000 0 0115899999999998  4577775     6799


Q ss_pred             EEEEecCCCCCc-eeEEeecCC-CCc-----ccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203          302 ISVLNLNKTKGR-ACVTFLDDK-PHV-----KGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       302 i~vwd~~~~~~~-~~~~~~~~~-~~~-----~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                      |+-|..+..... .+...++.. +.+     -..|+++-..|..+. +++++.|+.++-||+++|+.     .....+|+
T Consensus        83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i-----~r~~rGHt  156 (325)
T KOG0649|consen   83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRI-----QREYRGHT  156 (325)
T ss_pred             EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEE-----EEEEcCCc
Confidence            999988754220 111111100 011     235899999994454 55555799999999999984     33446899


Q ss_pred             cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-----------CccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203          375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-----------ESKCMSVLPNPCDFNLFMVQTGTPGRQLR  443 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  443 (540)
                      +.|.++.--.....+++|+.||++++||+++++.+.....           ...+.+++.+.     .++++|+ ...+.
T Consensus       157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-----dWlvCGg-Gp~ls  230 (325)
T KOG0649|consen  157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-----DWLVCGG-GPKLS  230 (325)
T ss_pred             ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-----ceEEecC-CCcee
Confidence            9999999855567789999999999999999998665332           23344555544     3666654 46899


Q ss_pred             EEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203          444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH  523 (540)
Q Consensus       444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~  523 (540)
                      +|.++..++... +.       ....+..+.|.  ...+++++..+.|.-|.+.   +..-..........++..|+..-
T Consensus       231 lwhLrsse~t~v-fp-------ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~---Gvl~a~ip~~s~~c~s~s~~~~p  297 (325)
T KOG0649|consen  231 LWHLRSSESTCV-FP-------IPARVHLVDFV--DDCVLIGGEGNHVQSYTLN---GVLQANIPVESTACYSASWQTSP  297 (325)
T ss_pred             EEeccCCCceEE-Ee-------cccceeEeeee--cceEEEeccccceeeeeec---cEEEEeccCCccceeeecccCCc
Confidence            999998775332 21       23467778884  5578888888889999888   55444444434345566664332


Q ss_pred             -CEEEEEEcCCcEEEE
Q 009203          524 -PLLISISSDLNIGLH  538 (540)
Q Consensus       524 -~~l~s~~~dg~v~iw  538 (540)
                       ++|-.++..+.+.|+
T Consensus       298 ~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  298 IKFISIAGFSNKLHIL  313 (325)
T ss_pred             eEEEEecccceeeeee
Confidence             455566666667665

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.81  E-value=2.3e-16  Score=157.67  Aligned_cols=298  Identities=24%  Similarity=0.358  Sum_probs=221.4

Q ss_pred             CCCCeEEEeccc------hhcccccCceEEEEEecCCCcEEEEEeC-CceEEEEEcCCCCCcceeecccccCCCCCCCCc
Q 009203          205 ASPATIHCHTSN------HVSSLHKRKLRSLSLNPVNEQLFVTSAL-DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP  277 (540)
Q Consensus       205 ~~d~~i~~~~~~------~~~~~h~~~V~~l~~spd~~~~l~tg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V  277 (540)
                      ..|+.+.+|+..      ..+.+|...|.+++|+|+ +.++++++. |+.+++|++........+        .+|...|
T Consensus       131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v  201 (466)
T COG2319         131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKPLSTL--------AGHTDPV  201 (466)
T ss_pred             CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCceEEee--------ccCCCce
Confidence            448899999654      447899999999999996 778888885 999999999985554444        4688999


Q ss_pred             eeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEE-eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          278 EDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVT-FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       278 ~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      .+++|+|++. .++++    +.|+.|.+||...+   .... .+..   |...+ ...|+| ++..+++++.|+.+++|+
T Consensus       202 ~~~~~~~~~~~~~~~~----~~d~~i~~wd~~~~---~~~~~~~~~---~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~  269 (466)
T COG2319         202 SSLAFSPDGGLLIASG----SSDGTIRLWDLSTG---KLLRSTLSG---HSDSV-VSSFSP-DGSLLASGSSDGTIRLWD  269 (466)
T ss_pred             EEEEEcCCcceEEEEe----cCCCcEEEEECCCC---cEEeeecCC---CCcce-eEeECC-CCCEEEEecCCCcEEEee
Confidence            9999999998 66666    89999999988744   3344 3443   33433 238999 778888999999999999


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec---cCccEEEEeecCCCCCceE
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ---IESKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  432 (540)
                      +.....  .....  ..|...+.++.|+|++..+++++.|+.+.+||...........   ....+..+.+ +.+ ...+
T Consensus       270 ~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~  343 (466)
T COG2319         270 LRSSSS--LLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD-GSLL  343 (466)
T ss_pred             ecCCCc--EEEEE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC-CCEE
Confidence            997663  01112  4688999999999988888889999899999998876654433   3334667777 422 1134


Q ss_pred             EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE-EeCCCcEEEEeccCCCCcccccccccc
Q 009203          433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS-GSADPVIHLFDIRYSANKPSQSIRAHQ  511 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s-g~~dg~i~iwd~~~~~~~~~~~~~~h~  511 (540)
                      +..+..|+.+.+|++.... .....      . ....+..+.+++ ...++. +..++.+.+|+...  .........+.
T Consensus       344 ~~~~~~d~~~~~~~~~~~~-~~~~~------~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  412 (466)
T COG2319         344 VSGGSDDGTIRLWDLRTGK-PLKTL------E-GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLST--GSLLRNLDGHT  412 (466)
T ss_pred             EEeecCCCcEEeeecCCCc-eeEEe------c-CCceEEEEEECC-CCCEEEEecCCCceEEEeccc--CeeeeeccCCC
Confidence            4444778999999998776 22111      1 111288899988 544444 68899999999997  34333333332


Q ss_pred             cceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          512 KRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       512 ~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ..+....+++++..+++++.++.+++|++
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (466)
T COG2319         413 SRVTSLDFSPDGKSLASGSSDNTIRLWDL  441 (466)
T ss_pred             CcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence            68999999999999999999999999974

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.9e-18  Score=153.85  Aligned_cols=256  Identities=12%  Similarity=0.085  Sum_probs=191.4

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC---CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK---GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS  347 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  347 (540)
                      .+|.+-|+++.|+.++++|++|    +.|..+++|.+...-   ..+.+.....  +|.+.|.|++|.. .+..+++|+.
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SG----GDD~~~~~W~~de~~~~k~~KPI~~~~~--~H~SNIF~L~F~~-~N~~~~SG~~  125 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASG----GDDMHGRVWNVDELMVRKTPKPIGVMEH--PHRSNIFSLEFDL-ENRFLYSGER  125 (609)
T ss_pred             hhhccccceeeeccCCeEEeec----CCcceeeeechHHHHhhcCCCCceeccC--ccccceEEEEEcc-CCeeEecCCC
Confidence            4899999999999999999999    999999999987421   1133444332  4668899999998 8889999999


Q ss_pred             CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCC----eeeeeccCccEEEEee
Q 009203          348 DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGR----ADFKHQIESKCMSVLP  423 (540)
Q Consensus       348 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~  423 (540)
                      +++|...|+++.+.   +..+......+.|+.+..+|..+.|++.+.++.|.+||.+...    ++..-..+....++.|
T Consensus       126 ~~~VI~HDiEt~qs---i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F  202 (609)
T KOG4227|consen  126 WGTVIKHDIETKQS---IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF  202 (609)
T ss_pred             cceeEeeeccccee---eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence            99999999999875   2333323345699999999999999999999999999998654    2333445566778889


Q ss_pred             cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcc
Q 009203          424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP  503 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~  503 (540)
                      +|..+  .+|++.+..+.+.+||.+.....+...+....+......-.++.|+|+|+.|.+--....-.+||+-+. ..+
T Consensus       203 ~P~~P--~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~-R~~  279 (609)
T KOG4227|consen  203 HPETP--ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ-RCF  279 (609)
T ss_pred             cCCCc--eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc-cce
Confidence            99876  589999999999999999877655443322233332233467899999999888766666677888752 222


Q ss_pred             ccccc----c--cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          504 SQSIR----A--HQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       504 ~~~~~----~--h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +..+.    +  ....|.+++|..|-. +++|+.+-.|++|+|
T Consensus       280 V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl  321 (609)
T KOG4227|consen  280 VLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKL  321 (609)
T ss_pred             eEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEec
Confidence            22222    1  122577888876544 999999999999986

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=5.7e-18  Score=145.23  Aligned_cols=251  Identities=13%  Similarity=0.219  Sum_probs=182.3

Q ss_pred             ceeEEEec--C-CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC-----CEEEEEecC
Q 009203          277 PEDIAWHP--Q-GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN-----PCFATGGSD  348 (540)
Q Consensus       277 V~~~~~~~--~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-----~~l~s~~~d  348 (540)
                      +.++.|+.  + +.+|+.|+...-..+.|.|..+..... +.+..-.  ..|.-+++.+-|.| +.     ++|+|++  
T Consensus        47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-e~~~~a~--fd~~YP~tK~~wiP-d~~g~~pdlLATs~--  120 (364)
T KOG0290|consen   47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-ELVEDAN--FDHPYPVTKLMWIP-DSKGVYPDLLATSS--  120 (364)
T ss_pred             eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-ceeccCC--CCCCCCccceEecC-CccccCcchhhccc--
Confidence            55677763  2 347787744434567788876663322 2221111  24678899999999 54     4566654  


Q ss_pred             CcEEEEecCCCCCccccc----eeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCe----eeeeccCccEE
Q 009203          349 HAVVLWSERDAEDSWKPK----ALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRA----DFKHQIESKCM  419 (540)
Q Consensus       349 g~i~iwd~~~~~~~~~~~----~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~  419 (540)
                      ..+++|.+...+......    .-....+..+++++.|+. +-++|.+++-|-++.|||+.++..    .+...++..+.
T Consensus       121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~  200 (364)
T KOG0290|consen  121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY  200 (364)
T ss_pred             CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence            479999998432111111    111233678999999976 668999999999999999998733    23466778889


Q ss_pred             EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCC-CcEEEEecc
Q 009203          420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGSAD-PVIHLFDIR  497 (540)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~d-g~i~iwd~~  497 (540)
                      .++|...+.  .++++.+.||.|++||++..+.....+.    -.....+...++|++. -+++|+-..| ..|.|.|++
T Consensus       201 DIaf~~~s~--~~FASvgaDGSvRmFDLR~leHSTIIYE----~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR  274 (364)
T KOG0290|consen  201 DIAFLKGSR--DVFASVGADGSVRMFDLRSLEHSTIIYE----DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR  274 (364)
T ss_pred             EEEeccCcc--ceEEEecCCCcEEEEEecccccceEEec----CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence            999987443  5899999999999999998775544432    1222557889999984 5778876655 579999999


Q ss_pred             CCCCcccccccccccceeEEEEcCCC-CEEEEEEcCCcEEEEeC
Q 009203          498 YSANKPSQSIRAHQKRVFKAVWHYSH-PLLISISSDLNIGLHKI  540 (540)
Q Consensus       498 ~~~~~~~~~~~~h~~~i~~l~~s~~~-~~l~s~~~dg~v~iw~l  540 (540)
                      .+ ..++..+.+|.+.|++++|.|.. ..|.|+|+|..+.||||
T Consensus       275 ~P-~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl  317 (364)
T KOG0290|consen  275 VP-CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL  317 (364)
T ss_pred             CC-CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence            87 78999999999999999999976 58999999999999996

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=8.2e-18  Score=144.10  Aligned_cols=239  Identities=16%  Similarity=0.216  Sum_probs=172.9

Q ss_pred             eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-------CcEEEEecCCCC
Q 009203          288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-------HAVVLWSERDAE  360 (540)
Q Consensus       288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-------g~i~iwd~~~~~  360 (540)
                      .+++|+..--.|+.|.+.+++.+........+.   |+.+.|+.++-+|.+..+|+++..+       ..+.||.+....
T Consensus        28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~---h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~  104 (370)
T KOG1007|consen   28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFF---HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPL  104 (370)
T ss_pred             EEEEeccccCCcceeEEEEecCccchhhhhhhh---cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccccc
Confidence            445553322467889998888764433333333   6788999999999888888888653       247799886543


Q ss_pred             Cccccceeec-----ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee-e------eccCccEEEEeecCCCC
Q 009203          361 DSWKPKALHR-----NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF-K------HQIESKCMSVLPNPCDF  428 (540)
Q Consensus       361 ~~~~~~~~~~-----~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~------~~~~~~~~~~~~~~~~~  428 (540)
                      ......++..     ..+-+.|.|+.|.|++..+++.. |..|.+|++..+..+. .      ........+-.|+|...
T Consensus       105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHd  183 (370)
T KOG1007|consen  105 GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHD  183 (370)
T ss_pred             CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCc
Confidence            2211111111     12445899999999999998776 7789999998866521 1      11234456677888432


Q ss_pred             CceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccCCCCcccccc
Q 009203          429 NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRYSANKPSQSI  507 (540)
Q Consensus       429 ~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~  507 (540)
                      . ..+++ ..|+++..||+++..+...      ....|...|..+.|+|+.. +|++++.||.|+|||.+.. ..++..+
T Consensus       184 g-nqv~t-t~d~tl~~~D~RT~~~~~s------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-k~pv~el  254 (370)
T KOG1007|consen  184 G-NQVAT-TSDSTLQFWDLRTMKKNNS------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-KFPVQEL  254 (370)
T ss_pred             c-ceEEE-eCCCcEEEEEccchhhhcc------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC-Ccccccc
Confidence            2 34444 4578999999998775443      2356888899999999865 5889999999999999975 6789999


Q ss_pred             cccccceeEEEEcCCC-CEEEEEEcCCcEEEEe
Q 009203          508 RAHQKRVFKAVWHYSH-PLLISISSDLNIGLHK  539 (540)
Q Consensus       508 ~~h~~~i~~l~~s~~~-~~l~s~~~dg~v~iw~  539 (540)
                      .+|...|+++.|+|.- ++|.+||.|..|.+|-
T Consensus       255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             CCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence            9999999999999854 6889999999999884

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=1.5e-17  Score=148.47  Aligned_cols=205  Identities=18%  Similarity=0.210  Sum_probs=161.1

Q ss_pred             CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccc--ceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEE
Q 009203          324 HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKP--KALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIG  400 (540)
Q Consensus       324 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~i  400 (540)
                      +|.++|..++|+|.+...|++|+.|.+|.||.+-.+......  ......+|...|.-++|+|. .+.|++++.|.+|.+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence            488999999999999999999999999999999766543222  24445789999999999995 578899999999999


Q ss_pred             EECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcccc-CeEEEEEcCCC
Q 009203          401 FDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQS-ALINQSWSPDG  479 (540)
Q Consensus       401 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g  479 (540)
                      ||+.+|+.+....+...+.++.|+.++   .++++.+.|..|+|||.+++.....       ..+|.+ ....+.|-.+|
T Consensus       159 Wnv~tgeali~l~hpd~i~S~sfn~dG---s~l~TtckDKkvRv~dpr~~~~v~e-------~~~heG~k~~Raifl~~g  228 (472)
T KOG0303|consen  159 WNVGTGEALITLDHPDMVYSMSFNRDG---SLLCTTCKDKKVRVIDPRRGTVVSE-------GVAHEGAKPARAIFLASG  228 (472)
T ss_pred             EeccCCceeeecCCCCeEEEEEeccCC---ceeeeecccceeEEEcCCCCcEeee-------cccccCCCcceeEEeccC
Confidence            999999998888899999999999988   7999999999999999998886442       234444 24556777788


Q ss_pred             CEEEEEe---CCCcEEEEeccCCCCccc--ccccccccceeEEEEcCCCCEEEE-EEcCCcEEEEeC
Q 009203          480 LYITSGS---ADPVIHLFDIRYSANKPS--QSIRAHQKRVFKAVWHYSHPLLIS-ISSDLNIGLHKI  540 (540)
Q Consensus       480 ~~l~sg~---~dg~i~iwd~~~~~~~~~--~~~~~h~~~i~~l~~s~~~~~l~s-~~~dg~v~iw~l  540 (540)
                      .++.+|-   ++..+-+||..+- .+++  ..+. .++.|.---|.+|..++.. |-.|+.|+.|.+
T Consensus       229 ~i~tTGfsr~seRq~aLwdp~nl-~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQIALWDPNNL-EEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             ceeeeccccccccceeccCcccc-cCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence            8555553   4678999999874 2232  2333 3445666678888887655 457899998864

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=6.1e-17  Score=159.03  Aligned_cols=298  Identities=14%  Similarity=0.157  Sum_probs=206.4

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCC-CCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS-RGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      -..|.-.++|+++|| +++++|+|..||.|.+|.-.. .....+..     ...-|.+.|.+++|+++|.+|++|    +
T Consensus       201 ~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t-----~lHWH~~~V~~L~fS~~G~~LlSG----G  270 (792)
T KOG1963|consen  201 TVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCT-----LLHWHHDEVNSLSFSSDGAYLLSG----G  270 (792)
T ss_pred             hhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccce-----EEEecccccceeEEecCCceEeec----c
Confidence            457888899999999 699999999999999997543 11111110     003688999999999999999999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec------c
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR------N  371 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~  371 (540)
                      ..+.+.+|.+.+++ ++.+..      -.++|..+.++| ++++.+....|..|.+....+......+..+..      .
T Consensus       271 ~E~VLv~Wq~~T~~-kqfLPR------Lgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~  342 (792)
T KOG1963|consen  271 REGVLVLWQLETGK-KQFLPR------LGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKT  342 (792)
T ss_pred             cceEEEEEeecCCC-cccccc------cCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccc
Confidence            99999999999875 233333      347899999999 999999989999999988765543222222211      1


Q ss_pred             cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc------------CccEEEEeecCCCCCceEEEEEc--
Q 009203          372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI------------ESKCMSVLPNPCDFNLFMVQTGT--  437 (540)
Q Consensus       372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~--  437 (540)
                      ...+-.+.++++|.-+.++..+..|.|.+||+-+...+.....            ...+.+++.+-.+   .++++.-  
T Consensus       343 ~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g---s~maT~E~~  419 (792)
T KOG1963|consen  343 RPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG---SWMATLEAR  419 (792)
T ss_pred             cccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc---eEEEEeeee
Confidence            1345567888999778888889999999999988766543221            1223344444443   5676652  


Q ss_pred             ------CC--CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CC-CEEEEEeCCCcEEEEeccCCC-------
Q 009203          438 ------PG--RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DG-LYITSGSADPVIHLFDIRYSA-------  500 (540)
Q Consensus       438 ------~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g-~~l~sg~~dg~i~iwd~~~~~-------  500 (540)
                            .|  -.+++|-..........-  ......|...+...++.+ .. ...++++.||.++||-+....       
T Consensus       420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~--T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s  497 (792)
T KOG1963|consen  420 IDKFNFFDGEVSLKFWQYNPNSKTFILN--TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSS  497 (792)
T ss_pred             ehhhhccCceEEEEEEEEcCCcceeEEE--EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCcc
Confidence                  22  357788776544322111  112346777666666544 33 378999999999999985311       


Q ss_pred             -CcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          501 -NKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       501 -~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                       ..+...-..|..++++++|+.||. +++++.|++|.+||+
T Consensus       498 ~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~  537 (792)
T KOG1963|consen  498 NWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDY  537 (792)
T ss_pred             ceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecC
Confidence             112222224788999999999996 556678999999985

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=7.9e-16  Score=147.80  Aligned_cols=271  Identities=12%  Similarity=0.121  Sum_probs=170.7

Q ss_pred             cCCCCeEEEeccc--------hhcccccCceEEEEEecCCCcEEEEE-eCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          204 SASPATIHCHTSN--------HVSSLHKRKLRSLSLNPVNEQLFVTS-ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       204 ~~~d~~i~~~~~~--------~~~~~h~~~V~~l~~spd~~~~l~tg-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      ...++.|.+|+..        ..+ .+.+....++++|| +++|+++ ..++.|.+|++.....+ +.....     ...
T Consensus         8 ~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~-----~~~   79 (330)
T PRK11028          8 SPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGAL-TFAAES-----PLP   79 (330)
T ss_pred             cCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCce-EEeeee-----cCC
Confidence            3456666666542        111 23466888999996 7777655 45789999999732221 111111     112


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC-CceeEEeecCCCCcccceeEEEEeCCCCCEEE-EEecCCcEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK-GRACVTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSDHAVV  352 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~  352 (540)
                      .....++|+|++++|+++.   ..++.|.+|++++.. ....+..+..    ...+.+++++| ++++++ +...++.|.
T Consensus        80 ~~p~~i~~~~~g~~l~v~~---~~~~~v~v~~~~~~g~~~~~~~~~~~----~~~~~~~~~~p-~g~~l~v~~~~~~~v~  151 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSAS---YNANCVSVSPLDKDGIPVAPIQIIEG----LEGCHSANIDP-DNRTLWVPCLKEDRIR  151 (330)
T ss_pred             CCceEEEECCCCCEEEEEE---cCCCeEEEEEECCCCCCCCceeeccC----CCcccEeEeCC-CCCEEEEeeCCCCEEE
Confidence            2356899999999888872   358999999997431 1122222222    23367789999 887775 445669999


Q ss_pred             EEecCCCCCccc-c-ceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCC--CCe--eeeec-------cCccE
Q 009203          353 LWSERDAEDSWK-P-KALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGV--GRA--DFKHQ-------IESKC  418 (540)
Q Consensus       353 iwd~~~~~~~~~-~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~--~~~--~~~~~-------~~~~~  418 (540)
                      +||+.+...+.. . ..... ........++|+|+|++++++.. ++.|.+||+..  ++.  +....       .....
T Consensus       152 v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  230 (330)
T PRK11028        152 LFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA  230 (330)
T ss_pred             EEEECCCCcccccCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence            999986332110 0 00111 12344678999999999988876 89999999973  332  11111       11123


Q ss_pred             EEEeecCCCCCceEEEEEc-CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEec
Q 009203          419 MSVLPNPCDFNLFMVQTGT-PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA-DPVIHLFDI  496 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~  496 (540)
                      ..+.++|++   ++++++. .++.|.+|++..........+....    ......+.|+|+|++|+++.. ++.|.+|++
T Consensus       231 ~~i~~~pdg---~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~----~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        231 ADIHITPDG---RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT----ETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             eeEEECCCC---CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec----cccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            457788887   5666664 5789999999754432222221111    124567899999999998765 899999998


Q ss_pred             cC
Q 009203          497 RY  498 (540)
Q Consensus       497 ~~  498 (540)
                      +.
T Consensus       304 ~~  305 (330)
T PRK11028        304 DG  305 (330)
T ss_pred             cC
Confidence            64

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.4e-16  Score=153.90  Aligned_cols=308  Identities=16%  Similarity=0.204  Sum_probs=222.3

Q ss_pred             CCeEEEeccc-----hhcccccCceEEEEEecCCC--cEEEEEeCCceEEEEEcCCCCCcceeecccccCC---------
Q 009203          207 PATIHCHTSN-----HVSSLHKRKLRSLSLNPVNE--QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS---------  270 (540)
Q Consensus       207 d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~--~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~---------  270 (540)
                      +..|++|...     .++.+|..+++.+.+.|...  .++.+++.||.|++||...+..+.++........         
T Consensus        36 ~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~  115 (792)
T KOG1963|consen   36 GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQAD  115 (792)
T ss_pred             CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhC
Confidence            5677777443     56899999999999998544  4678999999999999988766554432211000         


Q ss_pred             ------------------------------------------CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecC
Q 009203          271 ------------------------------------------PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN  308 (540)
Q Consensus       271 ------------------------------------------~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~  308 (540)
                                                                ..|.. -.++.+++.|.+.+..     .+..+.+|+..
T Consensus       116 ~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~-----~~~~~~~~~v~  189 (792)
T KOG1963|consen  116 ISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIV-----HMCKIHIYFVP  189 (792)
T ss_pred             ccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEE-----EeeeEEEEEec
Confidence                                                      01111 2455666666655554     56778888888


Q ss_pred             CCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC-CCCccccceeecccCCcceeEEEeccCCC
Q 009203          309 KTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD-AEDSWKPKALHRNLHSSAVMGVAGMQQKQ  387 (540)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  387 (540)
                      ...  +........-+|.-.+++.+++| +++++++|..||.|.+|.--. .........++.  |...|++++|+++|.
T Consensus       190 ~~~--~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--H~~~V~~L~fS~~G~  264 (792)
T KOG1963|consen  190 KHT--KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--HHDEVNSLSFSSDGA  264 (792)
T ss_pred             ccc--eeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEe--cccccceeEEecCCc
Confidence            653  22222222335666689999999 999999999999999996544 222333455555  889999999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc----c
Q 009203          388 IVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE----S  463 (540)
Q Consensus       388 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~----~  463 (540)
                      +|++|+..|.+.+|.+.+++..+....++.+..+.++|++   .+.+....|+.|.+....+.......-+....    .
T Consensus       265 ~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds---~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k  341 (792)
T KOG1963|consen  265 YLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDS---DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK  341 (792)
T ss_pred             eEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCC---CeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence            9999999999999999999987778889999999999988   56777778999999988766544433332221    1


Q ss_pred             CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-----------ccccceeEEEEcCCCCEEEEEE
Q 009203          464 SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-----------AHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       464 ~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-----------~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ....+-.+.++++|.-+.++..+..|.|.+||+.+  ...+..+.           .+.-.|+.++.+-.|.+++|.-
T Consensus       342 ~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t--d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E  417 (792)
T KOG1963|consen  342 TRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT--DSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE  417 (792)
T ss_pred             ccccccceeEEEcCCCCceeecCCCceEEEEeccc--cceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence            22355678899999777888888999999999987  33333332           1233678888888899988864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=5.7e-17  Score=153.02  Aligned_cols=237  Identities=19%  Similarity=0.247  Sum_probs=168.9

Q ss_pred             ecCCCCeEEEeccc-------hhcc--cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          203 TSASPATIHCHTSN-------HVSS--LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       203 ~~~~d~~i~~~~~~-------~~~~--~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      ..+..+.|-+|+..       .++.  .....|+.+.|.|.+...||.++.||.|+||.+..+........ ......+|
T Consensus       598 L~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t-Pe~~lt~h  676 (1012)
T KOG1445|consen  598 LAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT-PEKILTIH  676 (1012)
T ss_pred             ecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC-cceeeecc
Confidence            44557788888654       1222  23457999999998789999999999999999988765443322 22233689


Q ss_pred             CCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203          274 RRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV  352 (540)
Q Consensus       274 ~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  352 (540)
                      .+.|+++.|+|- .+.|+++    +.|.+|.+||+.++..   ...+.+   |.+.|.+++|+| +|.++++.+.||+|+
T Consensus       677 ~eKI~slRfHPLAadvLa~a----syd~Ti~lWDl~~~~~---~~~l~g---HtdqIf~~AWSp-dGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  677 GEKITSLRFHPLAADVLAVA----SYDSTIELWDLANAKL---YSRLVG---HTDQIFGIAWSP-DGRRIATVCKDGTLR  745 (1012)
T ss_pred             cceEEEEEecchhhhHhhhh----hccceeeeeehhhhhh---hheecc---CcCceeEEEECC-CCcceeeeecCceEE
Confidence            999999999994 5688888    9999999999998732   344444   788899999999 999999999999999


Q ss_pred             EEecCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCCC----eEEEEECCCC--CeeeeeccCccEEEEeecC
Q 009203          353 LWSERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGADK----RIIGFDAGVG--RADFKHQIESKCMSVLPNP  425 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~dg----~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~  425 (540)
                      +|..+.++.    ......+ ....--.+.|.-+|+++++.+.|.    .|.+||..+-  ..+.....+....-+..+-
T Consensus       746 Vy~Prs~e~----pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~Y  821 (1012)
T KOG1445|consen  746 VYEPRSREQ----PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHY  821 (1012)
T ss_pred             EeCCCCCCC----ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccc
Confidence            999998763    2222211 112334567777999998887764    5888887653  3343333322222222222


Q ss_pred             CCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      +...+.++++|-.|..|.+|.+-.....+.
T Consensus       822 D~Ds~~lfltGKGD~~v~~yEv~~esPy~l  851 (1012)
T KOG1445|consen  822 DYDSNVLFLTGKGDRFVNMYEVIYESPYLL  851 (1012)
T ss_pred             cCCCceEEEecCCCceEEEEEecCCCceee
Confidence            223336889999999999999976664443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.3e-17  Score=150.64  Aligned_cols=199  Identities=21%  Similarity=0.249  Sum_probs=146.5

Q ss_pred             eEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee
Q 009203          330 NSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD  409 (540)
Q Consensus       330 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  409 (540)
                      .+++|+. ++..+++|+.||++|||+......     .+....|...|.++.|+|||++|++.+.| ..++|+.+++..+
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t-----~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLT-----ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchh-----hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence            6899999 999999999999999999766542     33345588999999999999999999999 9999999999665


Q ss_pred             eeecc---CccEEEEeecCC--CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203          410 FKHQI---ESKCMSVLPNPC--DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS  484 (540)
Q Consensus       410 ~~~~~---~~~~~~~~~~~~--~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  484 (540)
                      .....   +.....+.|..+  +...++++....-+.|..||+...... ..+...+.. .....|++++.|++|+++|.
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~-~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKI-KRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence            44331   112223334333  222233334445567888887655432 111111112 22347999999999999999


Q ss_pred             EeCCCcEEEEeccCCCCcccccc-cccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          485 GSADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       485 g~~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      |+.||.|.|++...  .+.+... +.|...|+.+.|+||.+++++.+.|....|..
T Consensus       299 GT~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             eccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            99999999999987  4444433 47999999999999999999999988877754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.8e-16  Score=158.10  Aligned_cols=254  Identities=19%  Similarity=0.207  Sum_probs=178.7

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe-CCCCCEEEEEecCCcEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL-PWENPCFATGGSDHAVVL  353 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~i  353 (540)
                      .....+.|+|-...++++    .....|+|||.+.+   ..+..+.........|+.+.+- ..|..++++|+.||.|+|
T Consensus      1065 ~~pk~~~~hpf~p~i~~a----d~r~~i~vwd~e~~---~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAA----DDRERIRVWDWEKG---RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred             CCCceeeecCCCceeEEc----CCcceEEEEecccC---ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence            346678999999999998    77889999999976   4466665544445668888875 335678999999999999


Q ss_pred             EecCCCC-----Cccccceeec--ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCC
Q 009203          354 WSERDAE-----DSWKPKALHR--NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPC  426 (540)
Q Consensus       354 wd~~~~~-----~~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  426 (540)
                      |+--...     .+.....+..  .+-.+.-.-+.|.....+|++++.-..|+|||............+....--+.+++
T Consensus      1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSAD 1217 (1387)
T ss_pred             ecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccc
Confidence            9754321     1100111110  11111114457877777777777788999999998777666555444443344444


Q ss_pred             CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC--eEEEEEcCCCCE-EEEEeCCCcEEEEeccCCCCcc
Q 009203          427 DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA--LINQSWSPDGLY-ITSGSADPVIHLFDIRYSANKP  503 (540)
Q Consensus       427 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~g~~-l~sg~~dg~i~iwd~~~~~~~~  503 (540)
                      -..+.++++|..||.|++||.+.......    ......|...  |..+.+.+.|-- |++|+.||.|++||++......
T Consensus      1218 ~~~gn~i~AGfaDGsvRvyD~R~a~~ds~----v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAPPDSL----VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred             ccCCceEEEeecCCceEEeecccCCcccc----ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence            44457999999999999999997654211    1133456666  999999987754 9999999999999999732333


Q ss_pred             cccccccc--c-ceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          504 SQSIRAHQ--K-RVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       504 ~~~~~~h~--~-~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ..++..|.  + ..+++..+++...+|+|+. +.|+||++
T Consensus      1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred             cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence            33333443  3 5999999999999999998 99999985

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.76  E-value=1.8e-16  Score=138.06  Aligned_cols=232  Identities=15%  Similarity=0.175  Sum_probs=176.2

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      .+|+|.+|++|+..+|.+    ..+..|.||.....+.-+...++..   |...|++|+|+| ..+.|++|+.|..-++|
T Consensus        11 ~pitchAwn~drt~iAv~----~~~~evhiy~~~~~~~w~~~htls~---Hd~~vtgvdWap-~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVS----PNNHEVHIYSMLGADLWEPAHTLSE---HDKIVTGVDWAP-KSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             CceeeeeecCCCceEEec----cCCceEEEEEecCCCCceeceehhh---hCcceeEEeecC-CCCceeEccCCCCcccc
Confidence            679999999999999998    8899999999987654566777775   678899999999 99999999999999999


Q ss_pred             ecC-CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee-----eeeccCccEEEEeecCCCC
Q 009203          355 SER-DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD-----FKHQIESKCMSVLPNPCDF  428 (540)
Q Consensus       355 d~~-~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~  428 (540)
                      ... .+.-  . +++....+....+++.|+|.++.|++|+....|.+|-++...--     ........+.++.|+|.+ 
T Consensus        83 ~~~~~~~W--k-ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-  158 (361)
T KOG1523|consen   83 TQPSGGTW--K-PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-  158 (361)
T ss_pred             ccCCCCee--c-cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-
Confidence            994 4432  2 22333448899999999999999999999999999988754432     234456788999999988 


Q ss_pred             CceEEEEEcCCCeEEEEECCCCcce----------eeeecc-ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          429 NLFMVQTGTPGRQLRLYDIRLRQTE----------IHAFGW-KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       429 ~~~~l~~~~~dg~v~i~d~~~~~~~----------~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                        .++++|+.|+..++|..--....          ...|+. ..+.....+.|..+.|+|+|..|+-.+.|..+.+-|..
T Consensus       159 --VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  159 --VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             --ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence              78999999999999875321110          000110 11223456789999999999999999999999999988


Q ss_pred             CCCCcccccccccccceeEEEEcC
Q 009203          498 YSANKPSQSIRAHQKRVFKAVWHY  521 (540)
Q Consensus       498 ~~~~~~~~~~~~h~~~i~~l~~s~  521 (540)
                      .+ .+.+..+..-.-+..++.|-.
T Consensus       237 ~p-~~~v~~~~~~~lP~ls~~~is  259 (361)
T KOG1523|consen  237 GP-SERVQSVATAQLPLLSVSWIS  259 (361)
T ss_pred             CC-chhccchhhccCCceeeEeec
Confidence            64 223333332235666776643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.2e-16  Score=158.10  Aligned_cols=238  Identities=14%  Similarity=0.107  Sum_probs=161.4

Q ss_pred             CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203          245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH  324 (540)
Q Consensus       245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  324 (540)
                      +..|.+||..... ...+        ..|...+.+.+|+|||+.|+.+... ..+..|++||+.++.. ..+..+.    
T Consensus       183 ~~~i~i~d~dg~~-~~~l--------t~~~~~v~~p~wSPDG~~la~~s~~-~~~~~i~i~dl~tg~~-~~l~~~~----  247 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIV--------NRSSQPLMSPAWSPDGSKLAYVSFE-NKKSQLVVHDLRSGAR-KVVASFR----  247 (429)
T ss_pred             eEEEEEECCCCCC-ceEe--------ccCCCccccceEcCCCCEEEEEEec-CCCcEEEEEeCCCCce-EEEecCC----
Confidence            5789999986543 3333        3566779999999999999887221 2345799999987632 2233222    


Q ss_pred             cccceeEEEEeCCCCCEEEEEe-cCCcEEEE--ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEE
Q 009203          325 VKGIINSIIFLPWENPCFATGG-SDHAVVLW--SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIG  400 (540)
Q Consensus       325 ~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~i  400 (540)
                        +....++|+| +++.|+.++ .+|.+.||  |+.++..    ..+.  .+...+.+..|+|||+.|+.++ .+|...+
T Consensus       248 --g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~----~~lt--~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I  318 (429)
T PRK01742        248 --GHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTP----SQLT--SGAGNNTEPSWSPDGQSILFTSDRSGSPQV  318 (429)
T ss_pred             --CccCceeECC-CCCEEEEEEecCCcEEEEEEECCCCCe----Eeec--cCCCCcCCEEECCCCCEEEEEECCCCCceE
Confidence              2244689999 998887764 67765555  6665542    3332  3556688999999999877655 5677788


Q ss_pred             EECCC--CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC
Q 009203          401 FDAGV--GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD  478 (540)
Q Consensus       401 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  478 (540)
                      |++..  +.... .....  ....|+|++   .+|+..+.++ +.+||+.++.......       .+  ....+.|+||
T Consensus       319 ~~~~~~~~~~~~-l~~~~--~~~~~SpDG---~~ia~~~~~~-i~~~Dl~~g~~~~lt~-------~~--~~~~~~~sPd  382 (429)
T PRK01742        319 YRMSASGGGASL-VGGRG--YSAQISADG---KTLVMINGDN-VVKQDLTSGSTEVLSS-------TF--LDESPSISPN  382 (429)
T ss_pred             EEEECCCCCeEE-ecCCC--CCccCCCCC---CEEEEEcCCC-EEEEECCCCCeEEecC-------CC--CCCCceECCC
Confidence            87643  32221 22222  346788887   5676666654 5669998776432111       11  2245789999


Q ss_pred             CCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203          479 GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       479 g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      |++|+.++.+|.+.+|.+....+.....+..|.+.+...+|+|-
T Consensus       383 G~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        383 GIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            99999999999888888754447778888888888999999984

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=5.8e-16  Score=134.92  Aligned_cols=210  Identities=13%  Similarity=0.172  Sum_probs=162.8

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ..+|+|.+|++| +..+|.+.....|.||.....+.-. .....    ..|...|++++|+|..+.|+++    +.|..-
T Consensus        10 ~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~-~~htl----s~Hd~~vtgvdWap~snrIvtc----s~drna   79 (361)
T KOG1523|consen   10 LEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWE-PAHTL----SEHDKIVTGVDWAPKSNRIVTC----SHDRNA   79 (361)
T ss_pred             cCceeeeeecCC-CceEEeccCCceEEEEEecCCCCce-eceeh----hhhCcceeEEeecCCCCceeEc----cCCCCc
Confidence            368999999997 8999999999999999987765321 11111    5789999999999999999999    999999


Q ss_pred             EEEecCCC-CCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          303 SVLNLNKT-KGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       303 ~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      ++|....+ .-...+..+.    +....+++.|+| ..+.|++|+....|.||-++....-|..+.+. ..+.+.|++++
T Consensus        80 yVw~~~~~~~WkptlvLlR----iNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhik-kPirStv~sld  153 (361)
T KOG1523|consen   80 YVWTQPSGGTWKPTLVLLR----INRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIK-KPIRSTVTSLD  153 (361)
T ss_pred             cccccCCCCeeccceeEEE----eccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhC-Cccccceeeee
Confidence            99998433 2222222333    356799999999 99999999999999999998766433333222 34678899999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCC------------------CCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGV------------------GRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQL  442 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v  442 (540)
                      |+|++-++++|+.|+.+++|..--                  |..+... ...+.+..+.|+|++   ..|+-.+.|..+
T Consensus       154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG---~~lawv~Hds~v  230 (361)
T KOG1523|consen  154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG---NRLAWVGHDSTV  230 (361)
T ss_pred             ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC---CEeeEecCCCce
Confidence            999999999999999999997521                  1112223 456788999999988   688888899999


Q ss_pred             EEEECCCCc
Q 009203          443 RLYDIRLRQ  451 (540)
Q Consensus       443 ~i~d~~~~~  451 (540)
                      .+-|.....
T Consensus       231 ~~~da~~p~  239 (361)
T KOG1523|consen  231 SFVDAAGPS  239 (361)
T ss_pred             EEeecCCCc
Confidence            999987664

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.5e-16  Score=146.47  Aligned_cols=224  Identities=19%  Similarity=0.249  Sum_probs=156.3

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc------hhcccc
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN------HVSSLH  222 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~------~~~~~h  222 (540)
                      .++.||++-|+++.|.....                               .++++++|..+.+|+..      .|-.||
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~-------------------------------lL~SGSDD~r~ivWd~~~~KllhsI~TgH   92 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE-------------------------------LLASGSDDTRLIVWDPFEYKLLHSISTGH   92 (758)
T ss_pred             hhhccccceecceeecCCCC-------------------------------EEeecCCcceEEeecchhcceeeeeeccc
Confidence            46789999999999987743                               68899999999999875      345799


Q ss_pred             cCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCCc---ceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCC
Q 009203          223 KRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGSG---ASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADS  297 (540)
Q Consensus       223 ~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~---~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~  297 (540)
                      ...|.|+.|-|. +.+++++|..|..|+++|+...+.-   .....+..+ ...|...|..++-.|++ ..+.++    +
T Consensus        93 taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~-~~cht~rVKria~~p~~Phtfwsa----s  167 (758)
T KOG1310|consen   93 TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRC-WSCHTDRVKRIATAPNGPHTFWSA----S  167 (758)
T ss_pred             ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhh-hhhhhhhhhheecCCCCCceEEEe----c
Confidence            999999999995 4568999999999999999853211   011111111 14688899999999998 688888    9


Q ss_pred             CCCeEEEEecCCCCCce----eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC--------cccc
Q 009203          298 GDSQISVLNLNKTKGRA----CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED--------SWKP  365 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~  365 (540)
                      .||+|+-+|++......    +...+.......-...|+..+|.+..+|++|+.|-..++||.+....        ...+
T Consensus       168 EDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p  247 (758)
T KOG1310|consen  168 EDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP  247 (758)
T ss_pred             CCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCC
Confidence            99999999998642100    11111110011224678999998999999999999999999543211        0000


Q ss_pred             ------ceeecccCC--------c---ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe
Q 009203          366 ------KALHRNLHS--------S---AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA  408 (540)
Q Consensus       366 ------~~~~~~~~~--------~---~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~  408 (540)
                            ......+|.        .   .++-++|+|+|.-|++.-..-.|+++|+..++.
T Consensus       248 p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  248 PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence                  001111221        1   245678899998887766666899999977654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.74  E-value=3.5e-16  Score=145.09  Aligned_cols=269  Identities=11%  Similarity=0.116  Sum_probs=179.9

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCC-CCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS-PKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      -|...|.|+.|+. +...+.+++.+-.++-||+.... ........+... .-|..+- +..=-...+.|+.+    +.|
T Consensus        12 r~~e~vc~v~w~~-~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~r-s~~~g~~~d~~~i~----s~D   84 (737)
T KOG1524|consen   12 RNSEKVCCVDWSS-NEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGR-SSGGGKGSDTLLIC----SND   84 (737)
T ss_pred             ccceeEEeecccc-cceEEEeccCceEEEeecccchh-hhhhhCCcccCCcccccccc-ccCCCCCcceEEEE----cCC
Confidence            4667788999997 36666665555444455554332 221111111110 1121110 00001123367777    899


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      |.+.+.+-..    +..+...   .|.+.+.+-.|+| +|.-|++++.||.|++|.-...-    ..++  .....+|+|
T Consensus        85 Gkf~il~k~~----rVE~sv~---AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrsGML----RStl--~Q~~~~v~c  150 (737)
T KOG1524|consen   85 GRFVILNKSA----RVERSIS---AHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRSGML----RSTV--VQNEESIRC  150 (737)
T ss_pred             ceEEEecccc----hhhhhhh---hhhhhhhhcccCC-CCceeeeecCCceEEEEeccchH----HHHH--hhcCceeEE
Confidence            9999987652    2233344   4778899999999 99999999999999999865432    1112  225678999


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCC-CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVG-RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG  458 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  458 (540)
                      ++|.|+.+.++.+.. +.+.+=.+... +.+.-..+++-+.++.|++.+   .++++|+.|-..++||-..... .    
T Consensus       151 ~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s---~lI~sgGED~kfKvWD~~G~~L-f----  221 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS---NIIASGGEDFRFKIWDAQGANL-F----  221 (737)
T ss_pred             EEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccc---cceeecCCceeEEeecccCccc-c----
Confidence            999999887776654 35666665543 445556677889999999987   6999999999999999874432 1    


Q ss_pred             cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203          459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGL  537 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~i  537 (540)
                         ....|..+|++++|.|+ ..++.++. ++++   +.          +...+.|..++||+||..++.|+..|.+.+
T Consensus       222 ---~S~~~ey~ITSva~npd-~~~~v~S~-nt~R---~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  222 ---TSAAEEYAITSVAFNPE-KDYLLWSY-NTAR---FS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ---cCChhccceeeeeeccc-cceeeeee-eeee---ec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence               33578899999999999 55665543 3343   11          124568999999999999999999998754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=8.7e-17  Score=149.42  Aligned_cols=246  Identities=14%  Similarity=0.131  Sum_probs=164.0

Q ss_pred             ccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC--CCeEEE
Q 009203          214 TSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFS  291 (540)
Q Consensus       214 ~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s  291 (540)
                      +.+..|.||++.|+|++|+.| |.+|++|+.|-.+.|||....+.+..+.       +||...|.++.|-|.  ..++++
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~-------TgHtaNIFsvKFvP~tnnriv~s  112 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSIS-------TGHTANIFSVKFVPYTNNRIVLS  112 (758)
T ss_pred             chhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeee-------cccccceeEEeeeccCCCeEEEe
Confidence            445678999999999999995 9999999999999999998765544442       699999999999983  457888


Q ss_pred             EeecCCCCCeEEEEecCCCCCce----eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc-
Q 009203          292 AHTADSGDSQISVLNLNKTKGRA----CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK-  366 (540)
Q Consensus       292 ~~~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  366 (540)
                      |    ..|..|+++|+...+...    ..........|...|..|+..|...+.+.+++.||+|+-||++.......-. 
T Consensus       113 g----AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~  188 (758)
T KOG1310|consen  113 G----AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED  188 (758)
T ss_pred             c----cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc
Confidence            8    999999999998532211    1111122224677899999999555999999999999999999743200000 


Q ss_pred             ---e-eecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeee-ee-----ccCccEEEE-eecCCCCCceEEE
Q 009203          367 ---A-LHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADF-KH-----QIESKCMSV-LPNPCDFNLFMVQ  434 (540)
Q Consensus       367 ---~-~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~-~~-----~~~~~~~~~-~~~~~~~~~~~l~  434 (540)
                         . ......--...|+..+|. ..+|++|+.|-..++||.+...... ..     .....+.++ .|.|..     + 
T Consensus       189 ~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h-----l-  262 (758)
T KOG1310|consen  189 CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH-----L-  262 (758)
T ss_pred             ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc-----c-
Confidence               0 000112234678888884 5688899999999999965322211 00     001111111 122211     0 


Q ss_pred             EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS  499 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~  499 (540)
                       ...+|.+                     ..-...++-++|+|+|.-|+..-..-.|++||+...
T Consensus       263 -kn~~gn~---------------------~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  263 -KNSQGNL---------------------DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             -cCccccc---------------------ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence             0111100                     000113577899999988877766677999999874

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=6.6e-15  Score=123.42  Aligned_cols=245  Identities=14%  Similarity=0.190  Sum_probs=168.0

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC-----CCceeEEEecCCCeEEEEe
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR-----RWPEDIAWHPQGNSLFSAH  293 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~~~~~~~~~~l~s~~  293 (540)
                      .++|.++|+.++|..   .+|++|+ ||.|+=|...................+-|.     -.|+++-..|..+-|+.+ 
T Consensus        58 eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A-  132 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA-  132 (325)
T ss_pred             ccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe-
Confidence            479999999999984   3667765 699999987654321111111111112222     348899999888877777 


Q ss_pred             ecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee----
Q 009203          294 TADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH----  369 (540)
Q Consensus       294 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----  369 (540)
                         +.|+.++-||+++|   .....+.+   |.+.|.++.--. ....+++|+.||++++||.++++++..+....    
T Consensus       133 ---gGD~~~y~~dlE~G---~i~r~~rG---HtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~  202 (325)
T KOG0649|consen  133 ---GGDGVIYQVDLEDG---RIQREYRG---HTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL  202 (325)
T ss_pred             ---cCCeEEEEEEecCC---EEEEEEcC---Ccceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhh
Confidence               89999999999998   55667775   788899998855 55678899999999999999998743322221    


Q ss_pred             -cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          370 -RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       370 -~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                       +......|.+++.+  ..++++|+ ...+.+|.++..++...+.....+..+.|..+     .+++++..+.|.-|.+.
T Consensus       203 lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d-----~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  203 LRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD-----CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             cCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecc-----eEEEeccccceeeeeec
Confidence             12234567777765  46777655 45799999999999999998888888888764     67778888889999886


Q ss_pred             CCcceeeeeccccccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 009203          449 LRQTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGSADPVIHLF  494 (540)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iw  494 (540)
                      .--..        .........++..|+-. -++|-.++....+.|+
T Consensus       275 Gvl~a--------~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  275 GVLQA--------NIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cEEEE--------eccCCccceeeecccCCceEEEEecccceeeeee
Confidence            32111        11112223444455432 2455556666666665

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.71  E-value=2.3e-17  Score=160.40  Aligned_cols=232  Identities=17%  Similarity=0.186  Sum_probs=180.7

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA  350 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  350 (540)
                      .||..+|.|+.|...|.++++|    +.|..++||.+.++   .++....+   |.+.|+.++.+. ++.++++++.|..
T Consensus       187 lgH~naVyca~fDrtg~~Iitg----sdd~lvKiwS~et~---~~lAs~rG---hs~ditdlavs~-~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITG----SDDRLVKIWSMETA---RCLASCRG---HSGDITDLAVSS-NNTMIAAASNDKV  255 (1113)
T ss_pred             HhhhhheeeeeeccccceEeec----Cccceeeeeeccch---hhhccCCC---Cccccchhccch-hhhhhhhcccCce
Confidence            4899999999999999999999    99999999998875   55666665   788999999998 8889999999999


Q ss_pred             EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-----eccCccEEEEeecC
Q 009203          351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-----HQIESKCMSVLPNP  425 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~  425 (540)
                      |++|.+..+..   +..+  .+|++.|++++|+|-.    +.+.||++++||.+-...++.     ......+.++.+..
T Consensus       256 IrvWrl~~~~p---vsvL--rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~  326 (1113)
T KOG0644|consen  256 IRVWRLPDGAP---VSVL--RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN  326 (1113)
T ss_pred             EEEEecCCCch---HHHH--hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccc
Confidence            99999999875   3333  5699999999999943    788999999999982222221     22234445555554


Q ss_pred             CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCccc
Q 009203          426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPS  504 (540)
Q Consensus       426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~  504 (540)
                      .+   .-+++|+.|+.-..|.+....             .+...+.-+.++.+- .+.+++-.+..+.+|++..  +..+
T Consensus       327 ~~---~~f~Tgs~d~ea~n~e~~~l~-------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~--g~l~  388 (1113)
T KOG0644|consen  327 NG---DRFLTGSRDGEARNHEFEQLA-------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT--GQLL  388 (1113)
T ss_pred             cc---cccccccCCcccccchhhHhh-------------hhccceEEEeccccccccceeeeeeeEeeeeeccc--chhh
Confidence            43   468889999888888765322             122233333333332 4667777888999999998  7889


Q ss_pred             ccccccccceeEEEEcCCCC-EEEEEEcCCcEEEEeC
Q 009203          505 QSIRAHQKRVFKAVWHYSHP-LLISISSDLNIGLHKI  540 (540)
Q Consensus       505 ~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~v~iw~l  540 (540)
                      +.+.+|...+..+.++|-.. ...+++.||...|||+
T Consensus       389 H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  389 HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             hhhcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence            99999999999999999765 5678999999999996

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=2.8e-16  Score=142.07  Aligned_cols=203  Identities=17%  Similarity=0.134  Sum_probs=144.2

Q ss_pred             EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203          227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN  306 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd  306 (540)
                      .+++|++| |..|++|+.||++|||+......+...        ..|...|.++.|+|||++|++.    +.| ..+||+
T Consensus       148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e--------~~~~~eV~DL~FS~dgk~lasi----g~d-~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEE--------IAHHAEVKDLDFSPDGKFLASI----GAD-SARVWS  213 (398)
T ss_pred             eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhh--------HhhcCccccceeCCCCcEEEEe----cCC-ceEEEE
Confidence            89999995 899999999999999998776544444        4788999999999999999999    888 999999


Q ss_pred             cCCCCCceeEEeecCCCCcccceeEEEEeCCCC---CEE--EEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN---PCF--ATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l--~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      .+++.   ++....... .......+.|+. ++   .++  +....-+.|+.||+.........+..........|.+++
T Consensus       214 ~~~g~---~~a~~t~~~-k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~  288 (398)
T KOG0771|consen  214 VNTGA---ALARKTPFS-KDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA  288 (398)
T ss_pred             eccCc---hhhhcCCcc-cchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence            99882   233332111 234466778876 44   222  223344567776664322100001111111345799999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ  461 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  461 (540)
                      .+++|++++.|+.||.|-|++..+-+.++.                                                  
T Consensus       289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~--------------------------------------------------  318 (398)
T KOG0771|consen  289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQY--------------------------------------------------  318 (398)
T ss_pred             EcCCCcEEEEeccCCcEEEEEeceeeeeEe--------------------------------------------------
Confidence            999999999999999999998875443110                                                  


Q ss_pred             ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       462 ~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ....|...|+.+.|+||.+++++.+.|..+.|..+..
T Consensus       319 vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  319 VKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             ehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            1135777899999999999999988898888887764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.70  E-value=1.1e-14  Score=127.32  Aligned_cols=279  Identities=13%  Similarity=0.153  Sum_probs=188.9

Q ss_pred             EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203          228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL  307 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~  307 (540)
                      -++|||+ |+++|+.+.- .+.|-|..+-+...-+..         -+.|.-+.|..|.-+++.+.   ..++.|.+|++
T Consensus        13 ~c~fSp~-g~yiAs~~~y-rlviRd~~tlq~~qlf~c---------ldki~yieW~ads~~ilC~~---yk~~~vqvwsl   78 (447)
T KOG4497|consen   13 FCSFSPC-GNYIASLSRY-RLVIRDSETLQLHQLFLC---------LDKIVYIEWKADSCHILCVA---YKDPKVQVWSL   78 (447)
T ss_pred             ceeECCC-CCeeeeeeee-EEEEeccchhhHHHHHHH---------HHHhhheeeeccceeeeeee---eccceEEEEEe
Confidence            4689995 9999998855 788888887654333321         13467799998888776652   78899999999


Q ss_pred             CCCCCceeEEeecCCCCcccceeEEEEeCCCC-CEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC
Q 009203          308 NKTKGRACVTFLDDKPHVKGIINSIIFLPWEN-PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK  386 (540)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~  386 (540)
                      ...   +-...++.   ..+.+.+++|+| +| .+|.+...|-.|.+|.+.+...    ..+..  ....+..++|+|||
T Consensus        79 ~Qp---ew~ckIde---g~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~----~~~~~--pK~~~kg~~f~~dg  145 (447)
T KOG4497|consen   79 VQP---EWYCKIDE---GQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKG----YLLPH--PKTNVKGYAFHPDG  145 (447)
T ss_pred             ecc---eeEEEecc---CCCcceeeeECC-CcceEeeeecceeEEEEEEecccee----EEecc--cccCceeEEECCCC
Confidence            865   22333332   245699999999 77 5667777899999999998764    22222  23345788899999


Q ss_pred             CEEEEEeC------------------------------------CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203          387 QIVLSAGA------------------------------------DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       387 ~~l~~~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (540)
                      ++.+.++.                                    +..+.+||.--.-.+..+.-+-.+..+.|+|.+   
T Consensus       146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~---  222 (447)
T KOG4497|consen  146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN---  222 (447)
T ss_pred             ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecccc---
Confidence            88776653                                    123445554322223334445567788899977   


Q ss_pred             eEEEEEcCCCeEEEEECCCCcceeee------------------------------------------------------
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTEIHA------------------------------------------------------  456 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~~~~------------------------------------------------------  456 (540)
                      ++|++|+.|+.+++.+--+.+.....                                                      
T Consensus       223 qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~p  302 (447)
T KOG4497|consen  223 QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTP  302 (447)
T ss_pred             ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcc
Confidence            79999999999988664332110000                                                      


Q ss_pred             -----eccccccCccccCeEEEEEcCCCCEEEEEeCC--CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE
Q 009203          457 -----FGWKQESSESQSALINQSWSPDGLYITSGSAD--PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI  529 (540)
Q Consensus       457 -----~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~  529 (540)
                           +........-...+.-++||+|..|+++-.+.  +.+.+||+++  .+ +..+-....+|....|+|....|+.+
T Consensus       303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~--l~-l~avLiQk~piraf~WdP~~prL~vc  379 (447)
T KOG4497|consen  303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN--LK-LHAVLIQKHPIRAFEWDPGRPRLVVC  379 (447)
T ss_pred             eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh--hh-hhhhhhhccceeEEEeCCCCceEEEE
Confidence                 00000111123356678999999999987543  6799999996  33 33333356689999999999988888


Q ss_pred             EcCCcEEEEe
Q 009203          530 SSDLNIGLHK  539 (540)
Q Consensus       530 ~~dg~v~iw~  539 (540)
                      .....+++|.
T Consensus       380 tg~srLY~W~  389 (447)
T KOG4497|consen  380 TGKSRLYFWA  389 (447)
T ss_pred             cCCceEEEEc
Confidence            8788898885

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.70  E-value=1e-15  Score=142.22  Aligned_cols=222  Identities=17%  Similarity=0.147  Sum_probs=150.0

Q ss_pred             eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe-----CCCCCEEEEEecCCcEE
Q 009203          278 EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL-----PWENPCFATGGSDHAVV  352 (540)
Q Consensus       278 ~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~~l~s~~~dg~i~  352 (540)
                      ....++-.|++|+..     ....+.+|+.+.+.. . -..+...........|-+|+     | .+--++.|-.-|.|.
T Consensus       127 ~~~~~~~~gd~lcFn-----vg~~lyv~~~~g~~~-~-~~pi~k~~y~gt~P~cHdfn~~~a~~-~g~dllIGf~tGqvq  198 (636)
T KOG2394|consen  127 TNTNQSGKGDRLCFN-----VGRELYVYSYRGAAD-L-SKPIDKREYKGTSPTCHDFNSFTATP-KGLDLLIGFTTGQVQ  198 (636)
T ss_pred             eeccccCCCCEEEEe-----cCCeEEEEEccCcch-h-ccchhhhcccCCCCceecccccccCC-CCcceEEeeccCceE
Confidence            344445566677663     556688888874311 1 11111000111224455552     3 555677788889999


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCC--------------Ceee-------
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVG--------------RADF-------  410 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~--------------~~~~-------  410 (540)
                      +.|....+. .++...........|+++.|-|.+ ..++++..+|.+++||....              ....       
T Consensus       199 ~idp~~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk  277 (636)
T KOG2394|consen  199 LIDPINFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSK  277 (636)
T ss_pred             EecchhhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeecc
Confidence            998876331 111111112245789999998844 56667788999999976321              0000       


Q ss_pred             --------eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203          411 --------KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI  482 (540)
Q Consensus       411 --------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  482 (540)
                              .....+.+..++|+|++   .+||+.+.||.++|||..+.+...       ..+.--+...|++|||||+||
T Consensus       278 ~~rNPv~~w~~~~g~in~f~FS~DG---~~LA~VSqDGfLRvF~fdt~eLlg-------~mkSYFGGLLCvcWSPDGKyI  347 (636)
T KOG2394|consen  278 KTRNPVARWHIGEGSINEFAFSPDG---KYLATVSQDGFLRIFDFDTQELLG-------VMKSYFGGLLCVCWSPDGKYI  347 (636)
T ss_pred             ccCCccceeEeccccccceeEcCCC---ceEEEEecCceEEEeeccHHHHHH-------HHHhhccceEEEEEcCCccEE
Confidence                    01113467788999977   799999999999999999766432       223334689999999999999


Q ss_pred             EEEeCCCcEEEEeccCCCCcccccccccccceeEEEEc
Q 009203          483 TSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH  520 (540)
Q Consensus       483 ~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s  520 (540)
                      ++|++|--|.||.+..  .+.+..-.+|..+|..++|.
T Consensus       348 vtGGEDDLVtVwSf~e--rRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEE--RRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EecCCcceEEEEEecc--ceEEEeccccccceeeEeec
Confidence            9999999999999997  78899999999999999998

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=2.9e-14  Score=126.42  Aligned_cols=249  Identities=14%  Similarity=0.193  Sum_probs=164.9

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCCCeE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGDSQI  302 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i  302 (540)
                      -.+..++|++ .-.-+|++..|-.|++|+-.. .+...+.       ......|++++|-|.+. .|++|     --+-|
T Consensus        99 ~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lk-------s~sQrnvtclawRPlsaselavg-----Cr~gI  164 (445)
T KOG2139|consen   99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLK-------SVSQRNVTCLAWRPLSASELAVG-----CRAGI  164 (445)
T ss_pred             cceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceec-------chhhcceeEEEeccCCcceeeee-----eccee
Confidence            4688899998 466788999999999999876 3333332       12345699999999654 55554     56669


Q ss_pred             EEEecCCCCC---------ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeeccc
Q 009203          303 SVLNLNKTKG---------RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHRNL  372 (540)
Q Consensus       303 ~vwd~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~  372 (540)
                      .+|.......         ..+.+.+... +| .+|++|+|++ ||..+++++. |..|.|||..++.++   . +. ..
T Consensus       165 ciW~~s~tln~~r~~~~~s~~~~qvl~~p-gh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~---p-L~-~~  236 (445)
T KOG2139|consen  165 CIWSDSRTLNANRNIRMMSTHHLQVLQDP-GH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKI---P-LI-PK  236 (445)
T ss_pred             EEEEcCcccccccccccccccchhheeCC-CC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcc---c-cc-cc
Confidence            9997754211         1122233332 23 6799999999 9999998875 567999999998852   2 22 12


Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      ..+.+.-+.|||||.+|++++-|+..++|+... -......-..+.+...+|+|.+.  .+|++.+....  +|.+.-.+
T Consensus       237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGs--fLLf~~sgsp~--lysl~f~~  312 (445)
T KOG2139|consen  237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGS--FLLFACSGSPR--LYSLTFDG  312 (445)
T ss_pred             CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCC--EEEEEEcCCce--EEEEeecC
Confidence            557788999999999999999999999996543 33333334445888999999985  34555544333  44432211


Q ss_pred             ceeee--------------eccccccC---ccccCeEEEEEcCCCCEEEEEeCCC--------cEEEEeccC
Q 009203          452 TEIHA--------------FGWKQESS---ESQSALINQSWSPDGLYITSGSADP--------VIHLFDIRY  498 (540)
Q Consensus       452 ~~~~~--------------~~~~~~~~---~~~~~v~~~~~sp~g~~l~sg~~dg--------~i~iwd~~~  498 (540)
                      .....              +.......   -..+.+.+++|+|.|.+||+.-..+        .|.+||.+.
T Consensus       313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence            11000              00000001   1245788999999999999875433        467788774

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.69  E-value=9e-17  Score=146.51  Aligned_cols=228  Identities=12%  Similarity=0.192  Sum_probs=180.8

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEec
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE  356 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  356 (540)
                      ...+.++.+|.+|+.+    +..|.|..+|+.++.-   ...+..    ...|.++.|.. +.++||++- ...++|||-
T Consensus       132 PY~~~ytrnGrhlllg----GrKGHlAa~Dw~t~~L---~~Ei~v----~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~  198 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLG----GRKGHLAAFDWVTKKL---HFEINV----METVRDVTFLH-NEQFFAVAQ-KKYVYVYDN  198 (545)
T ss_pred             CeeeeecCCccEEEec----CCccceeeeeccccee---eeeeeh----hhhhhhhhhhc-chHHHHhhh-hceEEEecC
Confidence            4578999999999999    9999999999998733   333322    34589999998 777777765 478999998


Q ss_pred             CCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceEEEE
Q 009203          357 RDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFMVQT  435 (540)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~  435 (540)
                      ..-+.    ..+.   ....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+... +....+.-+|-+   ..+-+
T Consensus       199 ~GtEl----HClk---~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N---aVih~  268 (545)
T KOG1272|consen  199 NGTEL----HCLK---RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN---AVIHL  268 (545)
T ss_pred             CCcEE----eehh---hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc---ceEEE
Confidence            76552    2222   4467999999999999999999999999999999988765544 556677788877   68899


Q ss_pred             EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccccee
Q 009203          436 GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF  515 (540)
Q Consensus       436 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~  515 (540)
                      |...|+|.+|.....+.....       -.|.++|.++++.++|+|+||.+.|..++|||+++  ...+.++.. ..+..
T Consensus       269 GhsnGtVSlWSP~skePLvKi-------LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~--~~ql~t~~t-p~~a~  338 (545)
T KOG1272|consen  269 GHSNGTVSLWSPNSKEPLVKI-------LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN--FYQLHTYRT-PHPAS  338 (545)
T ss_pred             cCCCceEEecCCCCcchHHHH-------HhcCCCcceEEECCCCcEEeecccccceeEeeecc--ccccceeec-CCCcc
Confidence            999999999999988865543       46899999999999999999999999999999997  444444443 34577


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          516 KAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       516 ~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .+++|..|  ++++|....|.||.
T Consensus       339 ~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  339 NLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             cccccccc--ceeeecCCeeeeeh
Confidence            88898776  44555666888884

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=1.7e-14  Score=128.38  Aligned_cols=231  Identities=13%  Similarity=0.139  Sum_probs=164.2

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC--CcEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD--HAVV  352 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--g~i~  352 (540)
                      ..+..+.|+.+...|..|    +.|| .++|....-  .++.....    ....|.-+-|+.   .++|..+.+  ..++
T Consensus         6 ~ti~~~~~Nqd~~~lsvG----s~~G-yk~~~~~~~--~k~~~~~~----~~~~IvEmLFSS---SLvaiV~~~qpr~Lk   71 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVG----SKDG-YKIFSCSPF--EKCFSKDT----EGVSIVEMLFSS---SLVAIVSIKQPRKLK   71 (391)
T ss_pred             cceeeeeeccceeEEEcc----CCCc-eeEEecCch--HHhhcccC----CCeEEEEeeccc---ceeEEEecCCCceEE
Confidence            346677799988888887    7777 677777643  12222111    123466666754   566655544  3488


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc----CccEEEEeecCCCC
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI----ESKCMSVLPNPCDF  428 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~  428 (540)
                      ++++..+..+.   .   ......|.++.++.  +.|+++-.+ .|+|||+++-+.+.....    ...+.++.+++.+ 
T Consensus        72 v~~~Kk~~~IC---e---~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-  141 (391)
T KOG2110|consen   72 VVHFKKKTTIC---E---IFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-  141 (391)
T ss_pred             EEEcccCceEE---E---EecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCC-
Confidence            99988765321   1   12557799999874  555555554 499999999888765433    2345566666554 


Q ss_pred             CceEEEEE--cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCc-EEEEeccCCCCcccc
Q 009203          429 NLFMVQTG--TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPV-IHLFDIRYSANKPSQ  505 (540)
Q Consensus       429 ~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~-i~iwd~~~~~~~~~~  505 (540)
                        .+++.-  ...|.|.+||+.+-+...       .+..|.+.+-+++|+++|.+||++++.|+ ||||.+.+  +..+.
T Consensus       142 --~ylAyp~s~t~GdV~l~d~~nl~~v~-------~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~--G~kl~  210 (391)
T KOG2110|consen  142 --CYLAYPGSTTSGDVVLFDTINLQPVN-------TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE--GQKLY  210 (391)
T ss_pred             --ceEEecCCCCCceEEEEEcccceeee-------EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--ccEee
Confidence              466543  335899999998766433       44689999999999999999999999986 68999987  77777


Q ss_pred             ccccc--ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          506 SIRAH--QKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       506 ~~~~h--~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .|+..  ...|.+++|+|++++|++.|..++|+||+|
T Consensus       211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL  247 (391)
T ss_pred             eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence            77633  347899999999999999999999999985

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2.6e-14  Score=141.23  Aligned_cols=238  Identities=12%  Similarity=0.099  Sum_probs=156.8

Q ss_pred             ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203          246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV  325 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  325 (540)
                      ..|.+||...... ..+        ..+...+.+.+|+|||+.|+..+. ...+..|.+|++.++.. ..+..+.     
T Consensus       179 ~~l~~~d~dg~~~-~~l--------t~~~~~~~~p~wSPDG~~la~~s~-~~g~~~i~i~dl~~G~~-~~l~~~~-----  242 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVV--------HRSPQPLMSPAWSPDGSKLAYVTF-ESGRSALVIQTLANGAV-RQVASFP-----  242 (429)
T ss_pred             eeEEEEcCCCCCC-EEe--------ecCCCceeeeEEcCCCCEEEEEEe-cCCCcEEEEEECCCCCe-EEccCCC-----
Confidence            3688888875432 233        134456889999999999887522 13456899999987632 2222222     


Q ss_pred             ccceeEEEEeCCCCCEEEEE-ecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-C--eEE
Q 009203          326 KGIINSIIFLPWENPCFATG-GSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-K--RII  399 (540)
Q Consensus       326 ~~~v~~~~~~p~~~~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~  399 (540)
                       +.+..++|+| +++.|+.. +.+|  .|++||+.++..    ..+..  +...+....|+|||+.|+..+.+ +  .|+
T Consensus       243 -~~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~----~~lt~--~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy  314 (429)
T PRK03629        243 -RHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI----RQVTD--GRSNNTEPTWFPDSQNLAYTSDQAGRPQVY  314 (429)
T ss_pred             -CCcCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCE----EEccC--CCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence             2345689999 88877754 4444  589999988763    33322  34567889999999988877764 3  466


Q ss_pred             EEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcC-C--CeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          400 GFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTP-G--RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       400 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      ++|+.++................|+|++   .+++..+. +  ..|.+||+.++......       ..  .......|+
T Consensus       315 ~~d~~~g~~~~lt~~~~~~~~~~~SpDG---~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-------~~--~~~~~p~~S  382 (429)
T PRK03629        315 KVNINGGAPQRITWEGSQNQDADVSSDG---KFMVMVSSNGGQQHIAKQDLATGGVQVLT-------DT--FLDETPSIA  382 (429)
T ss_pred             EEECCCCCeEEeecCCCCccCEEECCCC---CEEEEEEccCCCceEEEEECCCCCeEEeC-------CC--CCCCCceEC
Confidence            6677766553333333344567889987   45554433 2  45888999877532211       11  123457899


Q ss_pred             CCCCEEEEEeCCCc---EEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203          477 PDGLYITSGSADPV---IHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       477 p~g~~l~sg~~dg~---i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      |||++|+.++.++.   +.+++++   +.....+..|.+.+...+|+|-
T Consensus       383 pDG~~i~~~s~~~~~~~l~~~~~~---G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        383 PNGTMVIYSSSQGMGSVLNLVSTD---GRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCCCEEEEEEcCCCceEEEEEECC---CCCeEECccCCCCcCCcccCCC
Confidence            99999999887764   6677775   5666777778888999999873

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.68  E-value=4.3e-15  Score=129.92  Aligned_cols=287  Identities=12%  Similarity=0.088  Sum_probs=178.2

Q ss_pred             EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR  275 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~  275 (540)
                      +.....+..|.+|+..     .-+..-.+++.+++||||+..+|.+...|-.|.||.+.+.....-.         .-+.
T Consensus        64 lC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~---------~pK~  134 (447)
T KOG4497|consen   64 LCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP---------HPKT  134 (447)
T ss_pred             eeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec---------cccc
Confidence            3444568899999776     2356667899999999985578888899999999999886542211         1223


Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      .+..++|+|||++.+.+    +.-......++...+.-..+..+..   ..-..+++.|+| ||+.|+.         ||
T Consensus       135 ~~kg~~f~~dg~f~ai~----sRrDCkdyv~i~~c~~W~ll~~f~~---dT~DltgieWsP-dg~~laV---------wd  197 (447)
T KOG4497|consen  135 NVKGYAFHPDGQFCAIL----SRRDCKDYVQISSCKAWILLKEFKL---DTIDLTGIEWSP-DGNWLAV---------WD  197 (447)
T ss_pred             CceeEEECCCCceeeee----ecccHHHHHHHHhhHHHHHHHhcCC---CcccccCceECC-CCcEEEE---------ec
Confidence            46789999999998887    3322211111111111111122221   122356788888 7766654         33


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee--------------------------
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD--------------------------  409 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--------------------------  409 (540)
                      .--.-.   ....   ...-.+..+.|+|.+++|+.|+.|+.+|+.+--+-+..                          
T Consensus       198 ~~Leyk---v~aY---e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q  271 (447)
T KOG4497|consen  198 NVLEYK---VYAY---ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ  271 (447)
T ss_pred             chhhhe---eeee---eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence            221110   0011   12245677888888888888888887776553211000                          


Q ss_pred             --------------------------------eeec---------cCccEEEEeecCCCCCceEEEEEcC--CCeEEEEE
Q 009203          410 --------------------------------FKHQ---------IESKCMSVLPNPCDFNLFMVQTGTP--GRQLRLYD  446 (540)
Q Consensus       410 --------------------------------~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~--dg~v~i~d  446 (540)
                                                      ..+.         ....+.-++|+++.   .++++-..  -+.+.+||
T Consensus       272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds---~y~aTrnd~~PnalW~Wd  348 (447)
T KOG4497|consen  272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS---TYAATRNDKYPNALWLWD  348 (447)
T ss_pred             hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc---eEEeeecCCCCceEEEEe
Confidence                                            0000         01123346677766   46655433  25699999


Q ss_pred             CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEE
Q 009203          447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL  526 (540)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l  526 (540)
                      ++..+....        -....+|....|+|....|+.+.....+++|....   ..........-.|..+.|.-+|..+
T Consensus       349 lq~l~l~av--------LiQk~piraf~WdP~~prL~vctg~srLY~W~psg---~~~V~vP~~GF~i~~l~W~~~g~~i  417 (447)
T KOG4497|consen  349 LQNLKLHAV--------LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG---PRVVGVPKKGFNIQKLQWLQPGEFI  417 (447)
T ss_pred             chhhhhhhh--------hhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC---ceEEecCCCCceeeeEEecCCCcEE
Confidence            986653221        12345899999999998888888788899998883   3333333344679999999999999


Q ss_pred             EEEEcCC
Q 009203          527 ISISSDL  533 (540)
Q Consensus       527 ~s~~~dg  533 (540)
                      +.++.|.
T Consensus       418 ~l~~kDa  424 (447)
T KOG4497|consen  418 VLCGKDA  424 (447)
T ss_pred             EEEcCCc
Confidence            9998885

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=3.5e-15  Score=147.82  Aligned_cols=232  Identities=12%  Similarity=0.134  Sum_probs=153.2

Q ss_pred             CCeEEEeccc----hhcccccCceEEEEEecCCCcEEEEEeCC---ceEEEEEcCCCCCcceeecccccCCCCCCCCcee
Q 009203          207 PATIHCHTSN----HVSSLHKRKLRSLSLNPVNEQLFVTSALD---GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED  279 (540)
Q Consensus       207 d~~i~~~~~~----~~~~~h~~~V~~l~~spd~~~~l~tg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~  279 (540)
                      +..+.+|+..    +.+..|...|.+.+|+|| |+.|+.++.+   ..|.+||+.+++.. .+ ...    .+|   ...
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~-~l-~~~----~g~---~~~  252 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARK-VV-ASF----RGH---NGA  252 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceE-EE-ecC----CCc---cCc
Confidence            5688888654    446788889999999997 7878777643   46999999876531 11 111    233   346


Q ss_pred             EEEecCCCeEEEEeecCCCCCeEEEE--ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEec
Q 009203          280 IAWHPQGNSLFSAHTADSGDSQISVL--NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSE  356 (540)
Q Consensus       280 ~~~~~~~~~l~s~~~~~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~  356 (540)
                      ++|+|||+.|+.+.   +.+|.+.||  |+.++   . ...+..   +...+....|+| ++..|+.++ .+|...||++
T Consensus       253 ~~wSPDG~~La~~~---~~~g~~~Iy~~d~~~~---~-~~~lt~---~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~  321 (429)
T PRK01742        253 PAFSPDGSRLAFAS---SKDGVLNIYVMGANGG---T-PSQLTS---GAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRM  321 (429)
T ss_pred             eeECCCCCEEEEEE---ecCCcEEEEEEECCCC---C-eEeecc---CCCCcCCEEECC-CCCEEEEEECCCCCceEEEE
Confidence            89999999888762   356765555  55543   2 223332   345578899999 888776554 5788888887


Q ss_pred             CCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEE
Q 009203          357 RDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTG  436 (540)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  436 (540)
                      ......  ...+   .+..  ....|+|+|+.|+.++.++ +.+||+.++........ ....+..|+|++   .+|+.+
T Consensus       322 ~~~~~~--~~~l---~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG---~~i~~~  389 (429)
T PRK01742        322 SASGGG--ASLV---GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNG---IMIIYS  389 (429)
T ss_pred             ECCCCC--eEEe---cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCC---CEEEEE
Confidence            543211  1112   2332  4578999999999888765 55699988865432211 223456789987   688888


Q ss_pred             cCCCeEEEEECCC--CcceeeeeccccccCccccCeEEEEEcCC
Q 009203          437 TPGRQLRLYDIRL--RQTEIHAFGWKQESSESQSALINQSWSPD  478 (540)
Q Consensus       437 ~~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  478 (540)
                      +.++.+.+|++.+  +....       .+..|.+.+...+|+|-
T Consensus       390 s~~g~~~~l~~~~~~G~~~~-------~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        390 STQGLGKVLQLVSADGRFKA-------RLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             EcCCCceEEEEEECCCCceE-------EccCCCCCCCCcccCCC
Confidence            8888888887632  33211       34566777888999984

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=2.8e-13  Score=120.71  Aligned_cols=241  Identities=11%  Similarity=0.156  Sum_probs=167.7

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ...+..+.|+-| ...|..|+.|| -++|+.+.-......        ......|.-+-|+.  .++|....  .....+
T Consensus         5 ~~ti~~~~~Nqd-~~~lsvGs~~G-yk~~~~~~~~k~~~~--------~~~~~~IvEmLFSS--SLvaiV~~--~qpr~L   70 (391)
T KOG2110|consen    5 KPTINFIGFNQD-STLLSVGSKDG-YKIFSCSPFEKCFSK--------DTEGVSIVEMLFSS--SLVAIVSI--KQPRKL   70 (391)
T ss_pred             Ccceeeeeeccc-eeEEEccCCCc-eeEEecCchHHhhcc--------cCCCeEEEEeeccc--ceeEEEec--CCCceE
Confidence            456777889985 88889999887 677877654321000        01122344555654  45555511  333568


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      ++.+...... -|-..+      ...|.++.++.   ++|+++-.+ .|+|||+.+.+.+..+...  ..+...+.++.+
T Consensus        71 kv~~~Kk~~~-ICe~~f------pt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~--~~n~~gl~AlS~  137 (391)
T KOG2110|consen   71 KVVHFKKKTT-ICEIFF------PTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETT--PPNPKGLCALSP  137 (391)
T ss_pred             EEEEcccCce-EEEEec------CCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhcc--CCCccceEeecc
Confidence            8888875421 222222      34699999954   677776654 4999999998864333322  235566777777


Q ss_pred             ccCCCEEEEEe--CCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCe-EEEEECCCCcceeeeec
Q 009203          383 MQQKQIVLSAG--ADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQ-LRLYDIRLRQTEIHAFG  458 (540)
Q Consensus       383 s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~~~~~~  458 (540)
                      ++.+.+++.-+  ..|.|.+||+.+-+.+.. ..+.+.+.+++|+++|   .+||+++..|+ |+||.+.+++.......
T Consensus       138 n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G---~llATASeKGTVIRVf~v~~G~kl~eFRR  214 (391)
T KOG2110|consen  138 NNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG---TLLATASEKGTVIRVFSVPEGQKLYEFRR  214 (391)
T ss_pred             CCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC---CEEEEeccCceEEEEEEcCCccEeeeeeC
Confidence            77777888633  368899999998887655 4566888899999998   79999999998 79999998886543221


Q ss_pred             cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                           ......|.+++|+|++.+|++.+..++|+||.++.
T Consensus       215 -----G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  215 -----GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             -----CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence                 01134689999999999999999999999999874

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.68  E-value=2.7e-15  Score=127.29  Aligned_cols=266  Identities=14%  Similarity=0.155  Sum_probs=170.9

Q ss_pred             ecCCCCeEEEeccc-----hhcc-cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCC
Q 009203          203 TSASPATIHCHTSN-----HVSS-LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRW  276 (540)
Q Consensus       203 ~~~~d~~i~~~~~~-----~~~~-~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~  276 (540)
                      ++..-+.+++|...     ..++ .|...|+.+.--| + .-|.+-+.|+.+.+|++.....+.           -|.-.
T Consensus        30 sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~s~~i~-----------i~Si~   96 (323)
T KOG0322|consen   30 SGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILWTIAYSAFIS-----------IHSIV   96 (323)
T ss_pred             cccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEEEccCcceEE-----------Eeeee
Confidence            34456788888654     3355 6778999999998 3 568888999999999998743211           12222


Q ss_pred             ceeEEEec-----CCC---eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC-CCcccceeEEEEeCCCCC--EEEEE
Q 009203          277 PEDIAWHP-----QGN---SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK-PHVKGIINSIIFLPWENP--CFATG  345 (540)
Q Consensus       277 V~~~~~~~-----~~~---~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~--~l~s~  345 (540)
                      ++++-|.+     .++   .++.. ...+.|. +.+-|...   ...+...... ....+.+.|..+...++.  +++.|
T Consensus        97 ~nslgFCrfSl~~~~k~~eqll~y-p~rgsde-~h~~D~g~---~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG  171 (323)
T KOG0322|consen   97 VNSLGFCRFSLVKKPKNSEQLLEY-PSRGSDE-THKQDGGD---TTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG  171 (323)
T ss_pred             ccccccccceeccCCCcchhheec-CCcccch-hhhhccCc---cceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence            34444433     111   12221 0001111 22222221   1122222111 123456777775443443  45678


Q ss_pred             ecCCcEEEEecCCCCCccccc-----eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC--Ceee--eec-cC
Q 009203          346 GSDHAVVLWSERDAEDSWKPK-----ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG--RADF--KHQ-IE  415 (540)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~--~~~-~~  415 (540)
                      ..+|.+.+||+.++..+..+.     ......|..+|.++.|.+.-..=++|+.+..+..|++...  ....  .+. ..
T Consensus       172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn  251 (323)
T KOG0322|consen  172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN  251 (323)
T ss_pred             ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC
Confidence            889999999999873211111     1122458999999999875555567788888999988643  2211  111 23


Q ss_pred             ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          416 SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      ..+..+..-|++   +++++++.|+.|++|..++.....       .++.|...|++++|+|+...+|+++.|++|.+|+
T Consensus       252 pGv~gvrIRpD~---KIlATAGWD~RiRVyswrtl~pLA-------VLkyHsagvn~vAfspd~~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  252 PGVSGVRIRPDG---KILATAGWDHRIRVYSWRTLNPLA-------VLKYHSAGVNAVAFSPDCELMAAASKDARISLWK  321 (323)
T ss_pred             CCccceEEccCC---cEEeecccCCcEEEEEeccCCchh-------hhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence            345556666776   799999999999999999887543       5677999999999999999999999999999998


Q ss_pred             c
Q 009203          496 I  496 (540)
Q Consensus       496 ~  496 (540)
                      +
T Consensus       322 L  322 (323)
T KOG0322|consen  322 L  322 (323)
T ss_pred             c
Confidence            6

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.5e-15  Score=137.99  Aligned_cols=279  Identities=15%  Similarity=0.185  Sum_probs=200.4

Q ss_pred             eEEecCCCCeEEEeccc------hhcccccCceEEEEEecCC-CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203          200 LVRTSASPATIHCHTSN------HVSSLHKRKLRSLSLNPVN-EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK  272 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~------~~~~~h~~~V~~l~~spd~-~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  272 (540)
                      .++++++|..+.+|+..      ....||...|.--.|-|.. .+.+++++.||.|++=.+...+........     ..
T Consensus       156 ~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl-----~~  230 (559)
T KOG1334|consen  156 VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL-----AP  230 (559)
T ss_pred             eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec-----cc
Confidence            47789999999999775      2357999999988888753 457899999999999877654432211111     47


Q ss_pred             CCCCceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203          273 HRRWPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV  351 (540)
Q Consensus       273 h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  351 (540)
                      |.++|..++.-|+.. -|.++    +.|+.+.-+|+..+.....+.....+....-....++..|.+...+++|+.|..+
T Consensus       231 h~g~vhklav~p~sp~~f~S~----geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~  306 (559)
T KOG1334|consen  231 HEGPVHKLAVEPDSPKPFLSC----GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFA  306 (559)
T ss_pred             ccCccceeeecCCCCCccccc----ccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhh
Confidence            889999999999765 67788    9999999999998755444443332111112578899999777799999999999


Q ss_pred             EEEecCCCCCc--------cccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe------------e--
Q 009203          352 VLWSERDAEDS--------WKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA------------D--  409 (540)
Q Consensus       352 ~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~------------~--  409 (540)
                      ++||.+.-...        ..+..+.. ...-.|++++|+.++.-|++...|-.|++|.-..+.-            +  
T Consensus       307 RvYD~R~~~~e~~n~~~~~f~p~hl~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~  385 (559)
T KOG1334|consen  307 RVYDQRRIDKEENNGVLDKFCPHHLVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKR  385 (559)
T ss_pred             hhhcccchhhccccchhhhcCCccccc-cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccch
Confidence            99998764321        01111111 2345699999998888888888888999995433211            0  


Q ss_pred             -e-eeccCccEEEEee-cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203          410 -F-KHQIESKCMSVLP-NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       410 -~-~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                       + .|.....+-.+-| .|..   .++++|+.-|.|.||+-.+++....       +.+...-|+|+.=+|.-.+||+.+
T Consensus       386 vYKGHrN~~TVKgVNFfGPrs---EyVvSGSDCGhIFiW~K~t~eii~~-------MegDr~VVNCLEpHP~~PvLAsSG  455 (559)
T KOG1334|consen  386 VYKGHRNSRTVKGVNFFGPRS---EYVVSGSDCGHIFIWDKKTGEIIRF-------MEGDRHVVNCLEPHPHLPVLASSG  455 (559)
T ss_pred             hhcccccccccceeeeccCcc---ceEEecCccceEEEEecchhHHHHH-------hhcccceEeccCCCCCCchhhccC
Confidence             1 1222334444544 3433   6999999999999999998875432       334444899999999999999999


Q ss_pred             CCCcEEEEeccC
Q 009203          487 ADPVIHLFDIRY  498 (540)
Q Consensus       487 ~dg~i~iwd~~~  498 (540)
                      -|..|+||-...
T Consensus       456 id~DVKIWTP~~  467 (559)
T KOG1334|consen  456 IDHDVKIWTPLT  467 (559)
T ss_pred             CccceeeecCCc
Confidence            999999998854

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=1.1e-14  Score=130.34  Aligned_cols=250  Identities=15%  Similarity=0.178  Sum_probs=177.2

Q ss_pred             CCCCceeEEEecCCC--eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203          273 HRRWPEDIAWHPQGN--SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA  350 (540)
Q Consensus       273 h~~~V~~~~~~~~~~--~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  350 (540)
                      ....|.+++|.-+++  .|...    +.+..+..+.+....-...............+|..++..   ...|++|-.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r----~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~  126 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNAR----SADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGN  126 (412)
T ss_pred             hhhhhhhheeecCCceeEeecc----ccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCc
Confidence            345677888876655  44444    466667776665432111110000111124557777664   346888888999


Q ss_pred             EEEEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCC--CeEEEEECCCCCeeee----------eccCcc
Q 009203          351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGAD--KRIIGFDAGVGRADFK----------HQIESK  417 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~d--g~i~iwd~~~~~~~~~----------~~~~~~  417 (540)
                      +.+|....+.........  ......+..+.-++.. ..+++|+..  ..+.+||+...+.++.          ......
T Consensus       127 l~~~~~k~~d~hss~l~~--la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW  204 (412)
T KOG3881|consen  127 LQVRHDKSGDLHSSKLIK--LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVW  204 (412)
T ss_pred             EEEEeccCCcccccccee--eecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeee
Confidence            999999865421111111  1122445555555544 455668887  7899999998866554          223456


Q ss_pred             EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      ..++.|-+..+. +.+++++.-+.|++||.+.+..++..+.      -...+++++...|+|++|++|..-|.+..||++
T Consensus       205 ~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRRPV~~fd------~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r  277 (412)
T KOG3881|consen  205 ITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRRPVAQFD------FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR  277 (412)
T ss_pred             eccceecCCCCC-ceEEEEecceeEEEecCcccCcceeEec------cccCcceeeeecCCCcEEEEecccchhheeccc
Confidence            677888776443 6899999999999999998888777653      336789999999999999999999999999999


Q ss_pred             CCCCccccc-ccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          498 YSANKPSQS-IRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       498 ~~~~~~~~~-~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .  ++.... +.+-.+.|.++..+|.+++|++||-|+.|||+|+
T Consensus       278 ~--~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  278 G--GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             C--ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence            7  565555 8889999999999999999999999999999985

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=2.1e-14  Score=128.66  Aligned_cols=276  Identities=12%  Similarity=0.123  Sum_probs=195.7

Q ss_pred             cCceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          223 KRKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       223 ~~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      ...|+.++|.-|+.. .|...+.|..+....+........+......  .+....|..++..  ...|++|    -.+|.
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~--~l~~~~I~gl~~~--dg~Litc----~~sG~  126 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTV--SLGTKSIKGLKLA--DGTLITC----VSSGN  126 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccc--ccccccccchhhc--CCEEEEE----ecCCc
Confidence            356888888765333 4444447777887777766554443110001  2445666666654  3367777    78999


Q ss_pred             EEEEecCCCCC-ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC--CcEEEEecCCCCCccccceeeccc----CC
Q 009203          302 ISVLNLNKTKG-RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD--HAVVLWSERDAEDSWKPKALHRNL----HS  374 (540)
Q Consensus       302 i~vwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~----~~  374 (540)
                      +.+|....+.. ...+..+..    ...+..+.-++....++++|+..  ..+.|||+.+.+.+|..+.+....    -.
T Consensus       127 l~~~~~k~~d~hss~l~~la~----g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP  202 (412)
T KOG3881|consen  127 LQVRHDKSGDLHSSKLIKLAT----GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP  202 (412)
T ss_pred             EEEEeccCCccccccceeeec----CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence            99999885531 112222222    24477888888677888889998  889999999988776655543321    23


Q ss_pred             cceeEEEeccC--CCEEEEEeCCCeEEEEECCCCCe-eeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          375 SAVMGVAGMQQ--KQIVLSAGADKRIIGFDAGVGRA-DFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       375 ~~v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      -.++++.|.+.  ...|++++.-+.|++||.+.++. +..+.. +..+.++...|.+   .++++|..-|.+..||++.+
T Consensus       203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g---n~Iy~gn~~g~l~~FD~r~~  279 (412)
T KOG3881|consen  203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG---NFIYTGNTKGQLAKFDLRGG  279 (412)
T ss_pred             eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC---cEEEEecccchhheecccCc
Confidence            45778999887  78999999999999999997654 444443 5667777888877   68999999999999999988


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      .....      .+.+..+.|+++..+|.+.+|++++-|..|||+|+.+  .+++...- -...++++.+.++
T Consensus       280 kl~g~------~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt--rkll~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  280 KLLGC------GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT--RKLLHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             eeecc------ccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc--chhhhhhh-hhccccEEEecCC
Confidence            76543      3567788999999999999999999999999999997  55554432 2334677777554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.66  E-value=1.1e-13  Score=132.46  Aligned_cols=305  Identities=13%  Similarity=0.090  Sum_probs=176.6

Q ss_pred             ecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc
Q 009203          203 TSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP  277 (540)
Q Consensus       203 ~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V  277 (540)
                      ....++.+.+.|..     ..+......-..+.|+|| |+++.+++.||.|.++|+.+.+.+.++....         ..
T Consensus        11 ~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---------~~   80 (369)
T PF02239_consen   11 VERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIKVGG---------NP   80 (369)
T ss_dssp             EEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---------EE
T ss_pred             EecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEecCC---------Cc
Confidence            34456666666654     123333233455789996 8888888999999999999999877775432         25


Q ss_pred             eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC----CcccceeEEEEeCCCCCEEEEEec-CCcEE
Q 009203          278 EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP----HVKGIINSIIFLPWENPCFATGGS-DHAVV  352 (540)
Q Consensus       278 ~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~  352 (540)
                      .++++++||++++++.   ...+.+.++|..+.   +.+..+....    .....+.++..+| ....++..-. .+.|.
T Consensus        81 ~~i~~s~DG~~~~v~n---~~~~~v~v~D~~tl---e~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~  153 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVAN---YEPGTVSVIDAETL---EPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIW  153 (369)
T ss_dssp             EEEEE--TTTEEEEEE---EETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEE
T ss_pred             ceEEEcCCCCEEEEEe---cCCCceeEeccccc---cceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEE
Confidence            6899999999998872   47899999999986   3344433211    1234678888888 6665555544 48888


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEE-eCCCeEEEEECCCCCeeeeeccC-----ccEEEEeecCC
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQIE-----SKCMSVLPNPC  426 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~  426 (540)
                      +.|......    ................|+|++++++.+ ..+..|-++|..+++.+......     .....+ .+|.
T Consensus       154 vVdy~d~~~----~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~  228 (369)
T PF02239_consen  154 VVDYSDPKN----LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPG  228 (369)
T ss_dssp             EEETTTSSC----EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETT
T ss_pred             EEEeccccc----cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCC
Confidence            888877642    222222244567789999999987665 45678999999988775442221     112221 2222


Q ss_pred             CCC-------ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE----eCCCcEEEEe
Q 009203          427 DFN-------LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG----SADPVIHLFD  495 (540)
Q Consensus       427 ~~~-------~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg----~~dg~i~iwd  495 (540)
                      ...       +...++.-....+.+||....+....       +.....+ ..+..+|+++++.+.    ...+.|.++|
T Consensus       229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~-------I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD  300 (369)
T PF02239_consen  229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT-------IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID  300 (369)
T ss_dssp             TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE-------EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred             cceEEeeccccceecccccCCccccchhhcCeEEEE-------EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence            100       01111111122444566666654332       2222334 778889999999988    4558999999


Q ss_pred             ccCCCCcccccccccc-cceeEEEEcCCCCEEEEEEcC--CcEEEEe
Q 009203          496 IRYSANKPSQSIRAHQ-KRVFKAVWHYSHPLLISISSD--LNIGLHK  539 (540)
Q Consensus       496 ~~~~~~~~~~~~~~h~-~~i~~l~~s~~~~~l~s~~~d--g~v~iw~  539 (540)
                      ..+  .+.+.++.... ..+..+.|++||+.+..+..+  +.|.|||
T Consensus       301 ~~t--l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  301 KKT--LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             CCG--TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred             CcC--cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence            998  56566654322 358999999999965444433  3699987

...

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.7e-14  Score=132.30  Aligned_cols=279  Identities=10%  Similarity=0.054  Sum_probs=192.7

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      -+|...-+.|..+||+..++|||.+-..|++||+.....  .+..+.+      ...|.-.-.+.|-..++.-    ..|
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlD------ae~V~feiLsDD~SK~v~L----~~D  115 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLD------AEVVDFEILSDDYSKSVFL----QND  115 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeeccc------ccceeEEEeccchhhheEe----ecC
Confidence            367788899999998666788999999999999986442  2221111      1223333334444445554    567


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      .+|-+...-.-    ...+ ..    ...-..++++..+..+++.|+ ...|+-++++.|..   +..+.  ...+.+++
T Consensus       116 R~IefHak~G~----hy~~-RI----P~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrf---L~P~~--~~~~~lN~  180 (703)
T KOG2321|consen  116 RTIEFHAKYGR----HYRT-RI----PKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRF---LNPFE--TDSGELNV  180 (703)
T ss_pred             ceeeehhhcCe----eeee-ec----CcCCccccccCCCccEEEeec-CcceEEEEcccccc---ccccc--ccccccee
Confidence            77766544311    1111 10    122346667654556555554 46788889999875   23332  25588999


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC------------ccEEEEeecCCCCCceEEEEEcCCCeEEEEEC
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE------------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDI  447 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~  447 (540)
                      +..++...+|++|+.+|.|-.||.+....+......            ..+.++.|+.++   ..+++|..+|.|.|||+
T Consensus       181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g---L~~aVGts~G~v~iyDL  257 (703)
T KOG2321|consen  181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG---LHVAVGTSTGSVLIYDL  257 (703)
T ss_pred             eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc---eeEEeeccCCcEEEEEc
Confidence            999999999999999999999999986654433222            237888888776   78999999999999999


Q ss_pred             CCCcceeeeeccccccCccccCeEEEEEcCC--CCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCE
Q 009203          448 RLRQTEIHAFGWKQESSESQSALINQSWSPD--GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPL  525 (540)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~  525 (540)
                      ++.+..+..      -.+..-+|..+.|.+.  ++.|++. ....++|||-.+  +++...+... ..++.+++-|++.+
T Consensus       258 Ra~~pl~~k------dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~--Gk~~asiEpt-~~lND~C~~p~sGm  327 (703)
T KOG2321|consen  258 RASKPLLVK------DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT--GKPMASIEPT-SDLNDFCFVPGSGM  327 (703)
T ss_pred             ccCCceeec------ccCCccceeeecccccCCCceEEec-chHHhhhccccc--CCceeecccc-CCcCceeeecCCce
Confidence            988764431      1233457889999775  4456555 457899999998  6777776643 35999999999999


Q ss_pred             EEEEEcCCcEEEE
Q 009203          526 LISISSDLNIGLH  538 (540)
Q Consensus       526 l~s~~~dg~v~iw  538 (540)
                      ++++-.++.+..|
T Consensus       328 ~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  328 FFTANESSKMHTY  340 (703)
T ss_pred             EEEecCCCcceeE
Confidence            9999888766544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.4e-14  Score=125.24  Aligned_cols=233  Identities=15%  Similarity=0.222  Sum_probs=162.1

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      .+..++|++.-..++++    ..|-.|++||-...    +...+...  ....|+|++|-|..+..|+.|.. +.|.||.
T Consensus       100 dlr~~aWhqH~~~fava----~nddvVriy~ksst----~pt~Lks~--sQrnvtclawRPlsaselavgCr-~gIciW~  168 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVA----TNDDVVRIYDKSST----CPTKLKSV--SQRNVTCLAWRPLSASELAVGCR-AGICIWS  168 (445)
T ss_pred             ceeeEeechhhhhhhhh----ccCcEEEEeccCCC----CCceecch--hhcceeEEEeccCCcceeeeeec-ceeEEEE
Confidence            36779999976678888    89999999998752    23333321  23569999999988888888887 5599998


Q ss_pred             cCCCCCccc---------cceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCCCeeeee-ccCccEEEEeec
Q 009203          356 ERDAEDSWK---------PKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVGRADFKH-QIESKCMSVLPN  424 (540)
Q Consensus       356 ~~~~~~~~~---------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~  424 (540)
                      .........         .+.+...+| .+|+++.|.+||..+++++. |..|.|||..++..+... ...+.+.-+.|+
T Consensus       169 ~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS  247 (445)
T KOG2139|consen  169 DSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS  247 (445)
T ss_pred             cCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence            754322111         233444455 78999999999999999876 667999999998876554 444566678999


Q ss_pred             CCCCCceEEEEEcCCCeEEEEECC-CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcc
Q 009203          425 PCDFNLFMVQTGTPGRQLRLYDIR-LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP  503 (540)
Q Consensus       425 ~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~  503 (540)
                      |++   .+++++.-|+..++|+.. +........        ..+.|...+|+|+|++|..... |.-++|.+.......
T Consensus       248 Pdg---d~lfaAt~davfrlw~e~q~wt~erw~l--------gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~  315 (445)
T KOG2139|consen  248 PDG---DVLFAATCDAVFRLWQENQSWTKERWIL--------GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDS  315 (445)
T ss_pred             CCC---CEEEEecccceeeeehhcccceecceec--------cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCc
Confidence            998   689999999999999544 333333222        2348999999999998765532 334455544211110


Q ss_pred             -------------cccc------cc---cccceeEEEEcCCCCEEEEEEcC
Q 009203          504 -------------SQSI------RA---HQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       504 -------------~~~~------~~---h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                                   +..+      .+   -.+.+.+++|.|.|.+||+.-..
T Consensus       316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence                         1111      11   24578999999999999987543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.65  E-value=7.8e-15  Score=136.26  Aligned_cols=207  Identities=21%  Similarity=0.238  Sum_probs=152.4

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      ...|+.++.||.+.|-+-. ++....+        ..|.+.|.+-.|+|||.-|+++    +.||.|++|.-...    .
T Consensus        75 ~d~~~i~s~DGkf~il~k~-~rVE~sv--------~AH~~A~~~gRW~~dGtgLlt~----GEDG~iKiWSrsGM----L  137 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS-ARVERSI--------SAHAAAISSGRWSPDGAGLLTA----GEDGVIKIWSRSGM----L  137 (737)
T ss_pred             cceEEEEcCCceEEEeccc-chhhhhh--------hhhhhhhhhcccCCCCceeeee----cCCceEEEEeccch----H
Confidence            3468888899999988754 3322333        5799999999999999999999    99999999986633    1


Q ss_pred             EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC
Q 009203          316 VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD  395 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d  395 (540)
                      ..++..   ...+|.|++|.|+..+.+++.+  +.+.|=.+...     ...+....|.+-|.++.|++..+++++|+.|
T Consensus       138 RStl~Q---~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n-----~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED  207 (737)
T KOG1524|consen  138 RSTVVQ---NEESIRCARWAPNSNSIVFCQG--GHISIKPLAAN-----SKIIRWRAHDGLVLSLSWSTQSNIIASGGED  207 (737)
T ss_pred             HHHHhh---cCceeEEEEECCCCCceEEecC--CeEEEeecccc-----cceeEEeccCcEEEEeecCccccceeecCCc
Confidence            111111   2457999999994444444443  45656555443     2456667899999999999999999999999


Q ss_pred             CeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEE
Q 009203          396 KRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQS  474 (540)
Q Consensus       396 g~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~  474 (540)
                      -..++||.. |..++. ..++..+.+++|+|+.    .++.++. +++++=                  +...+.|..++
T Consensus       208 ~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~----~~~v~S~-nt~R~~------------------~p~~GSifnls  263 (737)
T KOG1524|consen  208 FRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK----DYLLWSY-NTARFS------------------SPRVGSIFNLS  263 (737)
T ss_pred             eeEEeeccc-CcccccCChhccceeeeeecccc----ceeeeee-eeeeec------------------CCCccceEEEE
Confidence            999999987 555544 5567889999999984    4555443 233311                  22356899999


Q ss_pred             EcCCCCEEEEEeCCCcEEE
Q 009203          475 WSPDGLYITSGSADPVIHL  493 (540)
Q Consensus       475 ~sp~g~~l~sg~~dg~i~i  493 (540)
                      ||+||..+++|...|.+.+
T Consensus       264 WS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  264 WSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             EcCCCceeeccccCceEEE
Confidence            9999999999999997754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=3.2e-13  Score=134.37  Aligned_cols=237  Identities=10%  Similarity=0.100  Sum_probs=152.5

Q ss_pred             ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203          246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV  325 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  325 (540)
                      ..|.+||.... ....+        ..|...+.+.+|+|||+.|+..... ..+..|.+||+.++..   . .+..   +
T Consensus       182 ~~l~~~d~dg~-~~~~l--------t~~~~~v~~p~wSpDG~~lay~s~~-~g~~~i~~~dl~~g~~---~-~l~~---~  244 (435)
T PRK05137        182 KRLAIMDQDGA-NVRYL--------TDGSSLVLTPRFSPNRQEITYMSYA-NGRPRVYLLDLETGQR---E-LVGN---F  244 (435)
T ss_pred             eEEEEECCCCC-CcEEE--------ecCCCCeEeeEECCCCCEEEEEEec-CCCCEEEEEECCCCcE---E-Eeec---C
Confidence            46888887543 23333        3566789999999999988886321 2457899999987632   1 2221   2


Q ss_pred             ccceeEEEEeCCCCCEEE-EEecCCc--EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CC--eEE
Q 009203          326 KGIINSIIFLPWENPCFA-TGGSDHA--VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DK--RII  399 (540)
Q Consensus       326 ~~~v~~~~~~p~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg--~i~  399 (540)
                      .+.+.+.+|+| +|+.|+ +.+.++.  |++||+.++..    ..+.  .+........|+|||+.|+..+. +|  .|+
T Consensus       245 ~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~----~~Lt--~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy  317 (435)
T PRK05137        245 PGMTFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTT----TRLT--DSPAIDTSPSYSPDGSQIVFESDRSGSPQLY  317 (435)
T ss_pred             CCcccCcEECC-CCCEEEEEEecCCCceEEEEECCCCce----EEcc--CCCCccCceeEcCCCCEEEEEECCCCCCeEE
Confidence            34577889999 887765 5555554  77789887763    3332  24455678899999999887764 33  688


Q ss_pred             EEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCC---CeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          400 GFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPG---RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       400 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      +||+..+................|+|++   ..|+..+.+   ..|.+||+.++....  +      . ....+....|+
T Consensus       318 ~~d~~g~~~~~lt~~~~~~~~~~~SpdG---~~ia~~~~~~~~~~i~~~d~~~~~~~~--l------t-~~~~~~~p~~s  385 (435)
T PRK05137        318 VMNADGSNPRRISFGGGRYSTPVWSPRG---DLIAFTKQGGGQFSIGVMKPDGSGERI--L------T-SGFLVEGPTWA  385 (435)
T ss_pred             EEECCCCCeEEeecCCCcccCeEECCCC---CEEEEEEcCCCceEEEEEECCCCceEe--c------c-CCCCCCCCeEC
Confidence            8898876554433334445567899988   455554332   368888986544221  1      1 11235678999


Q ss_pred             CCCCEEEEEeCC------CcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203          477 PDGLYITSGSAD------PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       477 p~g~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      |||++|+..+.+      ..++++|+..   .....+. ..+.+...+|+|-
T Consensus       386 pDG~~i~~~~~~~~~~~~~~L~~~dl~g---~~~~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        386 PNGRVIMFFRQTPGSGGAPKLYTVDLTG---RNEREVP-TPGDASDPAWSPL  433 (435)
T ss_pred             CCCCEEEEEEccCCCCCcceEEEEECCC---CceEEcc-CCCCccCcccCCC
Confidence            999998765442      2577778764   2223333 2344677788763

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1e-13  Score=137.64  Aligned_cols=237  Identities=14%  Similarity=0.135  Sum_probs=153.1

Q ss_pred             ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203          246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV  325 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  325 (540)
                      ..|.+||.... ....+        ..+...+.+.+|+|||+.|+..... .....|.+||+.++..   .. +..   .
T Consensus       184 ~~l~i~D~~g~-~~~~l--------t~~~~~v~~p~wSpDg~~la~~s~~-~~~~~l~~~dl~~g~~---~~-l~~---~  246 (433)
T PRK04922        184 YALQVADSDGY-NPQTI--------LRSAEPILSPAWSPDGKKLAYVSFE-RGRSAIYVQDLATGQR---EL-VAS---F  246 (433)
T ss_pred             EEEEEECCCCC-CceEe--------ecCCCccccccCCCCCCEEEEEecC-CCCcEEEEEECCCCCE---EE-ecc---C
Confidence            46889998643 33333        2455678899999999999887221 2345799999987632   21 221   1


Q ss_pred             ccceeEEEEeCCCCCEEE-EEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CC--eEE
Q 009203          326 KGIINSIIFLPWENPCFA-TGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DK--RII  399 (540)
Q Consensus       326 ~~~v~~~~~~p~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg--~i~  399 (540)
                      .+...+++|+| +++.|+ +.+.+|  .|++||+.+++.    ..+.  .+.......+|+|||+.|+.++. +|  .|+
T Consensus       247 ~g~~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~----~~lt--~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy  319 (433)
T PRK04922        247 RGINGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQL----TRLT--NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIY  319 (433)
T ss_pred             CCCccCceECC-CCCEEEEEEeCCCCceEEEEECCCCCe----EECc--cCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            23455789999 887665 455555  599999988763    2332  24445567899999998887764 44  477


Q ss_pred             EEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCC---CeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          400 GFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPG---RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       400 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      ++|+.+++...............|+|++   .+++..+.+   ..|.+||+.++....  +      . +........|+
T Consensus       320 ~~dl~~g~~~~lt~~g~~~~~~~~SpDG---~~Ia~~~~~~~~~~I~v~d~~~g~~~~--L------t-~~~~~~~p~~s  387 (433)
T PRK04922        320 RVAASGGSAERLTFQGNYNARASVSPDG---KKIAMVHGSGGQYRIAVMDLSTGSVRT--L------T-PGSLDESPSFA  387 (433)
T ss_pred             EEECCCCCeEEeecCCCCccCEEECCCC---CEEEEEECCCCceeEEEEECCCCCeEE--C------C-CCCCCCCceEC
Confidence            7788776653332223334467899988   455544333   269999998765322  1      1 11133457899


Q ss_pred             CCCCEEEEEeCC---CcEEEEeccCCCCcccccccccccceeEEEEcC
Q 009203          477 PDGLYITSGSAD---PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY  521 (540)
Q Consensus       477 p~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~  521 (540)
                      |||++|+..+.+   +.|+++++.   +.....+..+.+.+...+|+|
T Consensus       388 pdG~~i~~~s~~~g~~~L~~~~~~---g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        388 PNGSMVLYATREGGRGVLAAVSTD---GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCCCEEEEEEecCCceEEEEEECC---CCceEEcccCCCCCCCCccCC
Confidence            999988876653   357777776   444555555666778888887

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=4.7e-12  Score=110.83  Aligned_cols=278  Identities=13%  Similarity=0.140  Sum_probs=173.8

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC------
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG------  298 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~------  298 (540)
                      ....++|+-| ...++.|..+| .+||+.+--+........  .  .|  -.+.-+-|-  .++|+..   |+.      
T Consensus         7 ~~lsvs~NQD-~ScFava~~~G-friyn~~P~ke~~~r~~~--~--~G--~~~veMLfR--~N~laLV---GGg~~pky~   73 (346)
T KOG2111|consen    7 KTLSVSFNQD-HSCFAVATDTG-FRIYNCDPFKESASRQFI--D--GG--FKIVEMLFR--SNYLALV---GGGSRPKYP   73 (346)
T ss_pred             ceeEEEEccC-CceEEEEecCc-eEEEecCchhhhhhhccc--c--Cc--hhhhhHhhh--hceEEEe---cCCCCCCCC
Confidence            4556999986 66777777665 999998763321111100  0  01  122233332  3455443   122      


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC-CCccccceeecccCCcce
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA-EDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v  377 (540)
                      -..|.|||=..   ..++..+..    ..+|.++.+.+   +.|++.- .+.|+||...+. +.   ...+........+
T Consensus        74 pNkviIWDD~k---~~~i~el~f----~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~---l~~~et~~NPkGl  139 (346)
T KOG2111|consen   74 PNKVIIWDDLK---ERCIIELSF----NSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKL---LHVIETRSNPKGL  139 (346)
T ss_pred             CceEEEEeccc---CcEEEEEEe----ccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhh---eeeeecccCCCce
Confidence            35799999332   355666553    56799999976   5666655 478999998843 32   1222222223334


Q ss_pred             eEEEeccCCCEEEE-EeCCCeEEEEECCCCCe---eeeeccCccEEEEeecCCCCCceEEEEEcCCCe-EEEEECCCCcc
Q 009203          378 MGVAGMQQKQIVLS-AGADKRIIGFDAGVGRA---DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ-LRLYDIRLRQT  452 (540)
Q Consensus       378 ~~l~~s~~~~~l~~-~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~  452 (540)
                      .+++-+.+..+|+. |-.-|.|.|-|+...+.   .....+...+.+++.+-++   .++|+++..|+ |+|||..++..
T Consensus       140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G---t~vATaStkGTLIRIFdt~~g~~  216 (346)
T KOG2111|consen  140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG---TLVATASTKGTLIRIFDTEDGTL  216 (346)
T ss_pred             EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc---cEEEEeccCcEEEEEEEcCCCcE
Confidence            44444434445554 44578999999987655   5556677888888888877   79999999998 89999999886


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC-cc-------cc-c-------------cccc
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN-KP-------SQ-S-------------IRAH  510 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~-~~-------~~-~-------------~~~h  510 (540)
                      .....     -......|.+++|||++.+||+++..|+|+||.+..... +.       .. .             +.-.
T Consensus       217 l~E~R-----RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~  291 (346)
T KOG2111|consen  217 LQELR-----RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLP  291 (346)
T ss_pred             eeeee-----cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEcc
Confidence            54321     112235799999999999999999999999999875211 11       00 0             1111


Q ss_pred             ccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203          511 QKRVFKAVWHYSHPLLISISSDLNIGL  537 (540)
Q Consensus       511 ~~~i~~l~~s~~~~~l~s~~~dg~v~i  537 (540)
                      .+...-++|-.+.+.++..+.||+.+-
T Consensus       292 ~~~~~~~~fg~~~nsvi~i~~Dgsy~k  318 (346)
T KOG2111|consen  292 QGTQCIIAFGSETNTVIAICADGSYYK  318 (346)
T ss_pred             CCCcEEEEecCCCCeEEEEEeCCcEEE
Confidence            234455667666566667777776543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.7e-13  Score=134.12  Aligned_cols=238  Identities=14%  Similarity=0.097  Sum_probs=146.7

Q ss_pred             ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203          246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV  325 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  325 (540)
                      ..|.+||.. +.....+        ..+...+.+.+|+|||+.|+..... .....|.+||+.++..   ... ..   .
T Consensus       176 ~~L~~~D~d-G~~~~~l--------~~~~~~v~~p~wSPDG~~la~~s~~-~~~~~I~~~dl~~g~~---~~l-~~---~  238 (427)
T PRK02889        176 YQLQISDAD-GQNAQSA--------LSSPEPIISPAWSPDGTKLAYVSFE-SKKPVVYVHDLATGRR---RVV-AN---F  238 (427)
T ss_pred             cEEEEECCC-CCCceEe--------ccCCCCcccceEcCCCCEEEEEEcc-CCCcEEEEEECCCCCE---EEe-ec---C
Confidence            356666663 3322333        2455678899999999998876211 2345699999987632   222 11   1


Q ss_pred             ccceeEEEEeCCCCCEEE-EEecCCcEEEEe--cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEE
Q 009203          326 KGIINSIIFLPWENPCFA-TGGSDHAVVLWS--ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGF  401 (540)
Q Consensus       326 ~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iw  401 (540)
                      .+.+.+.+|+| +++.|+ +.+.+|...||.  +.++.    ...+.  .+........|+|||+.|+..+. +|...+|
T Consensus       239 ~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~----~~~lt--~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy  311 (427)
T PRK02889        239 KGSNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSG----LRRLT--QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIY  311 (427)
T ss_pred             CCCccceEECC-CCCEEEEEEccCCCceEEEEECCCCC----cEECC--CCCCCCcCeEEcCCCCEEEEEecCCCCcEEE
Confidence            23466899999 888776 566777766665  44443    22232  24445667899999998887664 4555555


Q ss_pred             --ECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC---eEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          402 --DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR---QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       402 --d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                        ++.++................|+|++   .+++..+.++   .|.+||+.++.....        .. ........|+
T Consensus       312 ~~~~~~g~~~~lt~~g~~~~~~~~SpDG---~~Ia~~s~~~g~~~I~v~d~~~g~~~~l--------t~-~~~~~~p~~s  379 (427)
T PRK02889        312 RMPASGGAAQRVTFTGSYNTSPRISPDG---KLLAYISRVGGAFKLYVQDLATGQVTAL--------TD-TTRDESPSFA  379 (427)
T ss_pred             EEECCCCceEEEecCCCCcCceEECCCC---CEEEEEEccCCcEEEEEEECCCCCeEEc--------cC-CCCccCceEC
Confidence              55555432222222334457789987   5666555443   699999987653221        11 1223567999


Q ss_pred             CCCCEEEEEeCCC-c--EEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203          477 PDGLYITSGSADP-V--IHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       477 p~g~~l~sg~~dg-~--i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      |||++|+.++.++ .  +++.++.   +.....+..+.+.+...+|+|-
T Consensus       380 pdg~~l~~~~~~~g~~~l~~~~~~---g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        380 PNGRYILYATQQGGRSVLAAVSSD---GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCCEEEEEEecCCCEEEEEEECC---CCceEEeecCCCCCCCCccCCC
Confidence            9999988776543 3  4455553   4555556666677888899874

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.60  E-value=8.2e-15  Score=133.89  Aligned_cols=264  Identities=9%  Similarity=0.015  Sum_probs=196.3

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      +-..+.|+. +|++|+.|+.-|.|..+|..++.....+..         ...|.++.|..+..+||++     ....+.|
T Consensus       131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---------~Etv~Dv~~LHneq~~AVA-----QK~y~yv  195 (545)
T KOG1272|consen  131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINV---------METVRDVTFLHNEQFFAVA-----QKKYVYV  195 (545)
T ss_pred             CCeeeeecC-CccEEEecCCccceeeeecccceeeeeeeh---------hhhhhhhhhhcchHHHHhh-----hhceEEE
Confidence            456788887 599999999999999999999876655532         2458899999988899986     8889999


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  384 (540)
                      ||-. |.   .+..+..    ...|..+.|.| .--+|++++..|.++.-|+.+|+.+..+.     ...+.+..++-+|
T Consensus       196 YD~~-Gt---ElHClk~----~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~-----t~~G~~~vm~qNP  261 (545)
T KOG1272|consen  196 YDNN-GT---ELHCLKR----HIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIR-----TGAGRTDVMKQNP  261 (545)
T ss_pred             ecCC-Cc---EEeehhh----cCchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHH-----ccCCccchhhcCC
Confidence            9977 42   2444433    24599999999 88889999999999999999998743333     2557788888899


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc
Q 009203          385 QKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES  463 (540)
Q Consensus       385 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  463 (540)
                      -+..+-+|...|+|.+|.....+++.. ..+.+.+.++++++.+   .|+++.+.|..++|||+++........      
T Consensus       262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G---~YMaTtG~Dr~~kIWDlR~~~ql~t~~------  332 (545)
T KOG1272|consen  262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGG---RYMATTGLDRKVKIWDLRNFYQLHTYR------  332 (545)
T ss_pred             ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCC---cEEeecccccceeEeeeccccccceee------
Confidence            889999999999999999998887654 5567888999999988   899999999999999999876433221      


Q ss_pred             CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC-CCccccccccc--ccceeEEEEcCCCCEEEEEE
Q 009203          464 SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS-ANKPSQSIRAH--QKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       464 ~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~h--~~~i~~l~~s~~~~~l~s~~  530 (540)
                      .  ..+...++||..| +||.+ ....|.||.=... .+.....+-.|  .++|..+.|.|-...|-.|-
T Consensus       333 t--p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH  398 (545)
T KOG1272|consen  333 T--PHPASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH  398 (545)
T ss_pred             c--CCCcccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence            1  2356778888554 45544 4455889954321 11111111122  34899999998655554443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=8e-13  Score=130.63  Aligned_cols=232  Identities=13%  Similarity=0.130  Sum_probs=147.6

Q ss_pred             eEEEeccc----hhcccccCceEEEEEecCCCcEEEEEe---CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEE
Q 009203          209 TIHCHTSN----HVSSLHKRKLRSLSLNPVNEQLFVTSA---LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA  281 (540)
Q Consensus       209 ~i~~~~~~----~~~~~h~~~V~~l~~spd~~~~l~tg~---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  281 (540)
                      .+.+++..    +.+..+...+.+.+|+|| |+.|+..+   .+..+.+|++.+++.. .+ .       .....+..++
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~-~l-~-------~~~~~~~~~~  249 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVR-QV-A-------SFPRHNGAPA  249 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeE-Ec-c-------CCCCCcCCeE
Confidence            56666543    335566778999999997 77777543   2457999999876521 11 1       1122345689


Q ss_pred             EecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-Cc--EEEEecCC
Q 009203          282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-HA--VVLWSERD  358 (540)
Q Consensus       282 ~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~--i~iwd~~~  358 (540)
                      |+|||+.|+..... ..+..|.+||+.++.   .......    ...+....|+| +++.|+..+.+ +.  |+++|+.+
T Consensus       250 ~SPDG~~La~~~~~-~g~~~I~~~d~~tg~---~~~lt~~----~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~  320 (429)
T PRK03629        250 FSPDGSKLAFALSK-TGSLNLYVMDLASGQ---IRQVTDG----RSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNING  320 (429)
T ss_pred             ECCCCCEEEEEEcC-CCCcEEEEEECCCCC---EEEccCC----CCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCC
Confidence            99999988764211 123358999998752   2222222    23577899999 99988776654 44  55556766


Q ss_pred             CCCccccceeecccCCcceeEEEeccCCCEEEEEeCC---CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEE
Q 009203          359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD---KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQT  435 (540)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  435 (540)
                      +..    ..+..  .........|+|||++|+..+.+   ..|.+||+.++...... .........|+|++   .+|+.
T Consensus       321 g~~----~~lt~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~~~~~~~p~~SpDG---~~i~~  390 (429)
T PRK03629        321 GAP----QRITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-DTFLDETPSIAPNG---TMVIY  390 (429)
T ss_pred             CCe----EEeec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-CCCCCCCceECCCC---CEEEE
Confidence            542    33322  33445678999999999876653   35889999887654322 22223456788887   56777


Q ss_pred             EcCCCe---EEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203          436 GTPGRQ---LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP  477 (540)
Q Consensus       436 ~~~dg~---v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  477 (540)
                      .+.++.   +.++++..... .       .+.+|.+.+...+|+|
T Consensus       391 ~s~~~~~~~l~~~~~~G~~~-~-------~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        391 SSSQGMGSVLNLVSTDGRFK-A-------RLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEcCCCceEEEEEECCCCCe-E-------ECccCCCCcCCcccCC
Confidence            666653   67777754332 1       2345677788888987

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.58  E-value=2.2e-11  Score=117.09  Aligned_cols=291  Identities=12%  Similarity=0.125  Sum_probs=177.7

Q ss_pred             EEEEeCC----ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC-Cc
Q 009203          239 FVTSALD----GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK-GR  313 (540)
Q Consensus       239 l~tg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~-~~  313 (540)
                      ++.|+..    +.|.+|+++.............     -......++++|++++|+++...+..++.|..|++.... ..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-----~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L   76 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-----EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL   76 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-----ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-----CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee
Confidence            4455555    6788887743332222222211     112345699999999999883211157899999988641 22


Q ss_pred             eeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCcccc-ceeec--------ccCCcceeEEEec
Q 009203          314 ACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKP-KALHR--------NLHSSAVMGVAGM  383 (540)
Q Consensus       314 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~-~~~~~--------~~~~~~v~~l~~s  383 (540)
                      ..+.....   .......++++| ++.+|+++. .+|.|.++++.....+... .....        ........++.|+
T Consensus        77 ~~~~~~~~---~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~  152 (345)
T PF10282_consen   77 TLLNSVPS---GGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS  152 (345)
T ss_dssp             EEEEEEEE---SSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred             EEeeeecc---CCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence            22333221   134467899999 888887776 5899999999874221111 11110        0123457889999


Q ss_pred             cCCCEEEEEeC-CCeEEEEECCCCC--eee----eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          384 QQKQIVLSAGA-DKRIIGFDAGVGR--ADF----KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       384 ~~~~~l~~~~~-dg~i~iwd~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      |+|+++++... ...|.+|++....  ...    ....+.....+.|+|++.  .+.++...++.|.+|++.........
T Consensus       153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~--~~Yv~~e~s~~v~v~~~~~~~g~~~~  230 (345)
T PF10282_consen  153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK--YAYVVNELSNTVSVFDYDPSDGSLTE  230 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS--EEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC--EEEEecCCCCcEEEEeecccCCceeE
Confidence            99998887654 4479999997655  211    345567788999999873  35566777899999999832212211


Q ss_pred             ecccccc---CccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCc--ccccccccccceeEEEEcCCCCEEEEEE
Q 009203          457 FGWKQES---SESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANK--PSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       457 ~~~~~~~---~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~--~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ......+   .........++++|||++|+++. ..+.|.+|+++...+.  .+..+.........++++|+|++|++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~  310 (345)
T PF10282_consen  231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN  310 (345)
T ss_dssp             EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE
T ss_pred             EEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence            1111111   11123688899999999987765 5678999999542222  3333333344579999999999888776


Q ss_pred             -cCCcEEEEeC
Q 009203          531 -SDLNIGLHKI  540 (540)
Q Consensus       531 -~dg~v~iw~l  540 (540)
                       .++.|.+|++
T Consensus       311 ~~s~~v~vf~~  321 (345)
T PF10282_consen  311 QDSNTVSVFDI  321 (345)
T ss_dssp             TTTTEEEEEEE
T ss_pred             cCCCeEEEEEE
Confidence             5578988864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.58  E-value=3.1e-13  Score=125.89  Aligned_cols=177  Identities=12%  Similarity=0.139  Sum_probs=128.3

Q ss_pred             cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecC-CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-
Q 009203          284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDD-KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED-  361 (540)
Q Consensus       284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-  361 (540)
                      +.+--|+.+    -..|.|++.|.....   ..+.+.. ..-.+..|+|+.|-|.+...++.+-.+|.+++||..-... 
T Consensus       183 ~~g~dllIG----f~tGqvq~idp~~~~---~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~  255 (636)
T KOG2394|consen  183 PKGLDLLIG----FTTGQVQLIDPINFE---VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA  255 (636)
T ss_pred             CCCcceEEe----eccCceEEecchhhH---HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC
Confidence            456567777    788889988876421   1111111 1112467999999998888888899999999997632110 


Q ss_pred             ---ccc-------c------------ceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccE
Q 009203          362 ---SWK-------P------------KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKC  418 (540)
Q Consensus       362 ---~~~-------~------------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~  418 (540)
                         .+.       +            .........+.|+.++|+|||++|++.+.||.++|||..+.+.+-. ...-+..
T Consensus       256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL  335 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL  335 (636)
T ss_pred             CCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce
Confidence               000       0            0011111345789999999999999999999999999997665443 2334678


Q ss_pred             EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203          419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP  477 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  477 (540)
                      ++++|+|++   ++|++|+.|.-|.||.+...+...       .-.+|.++|..|+|+|
T Consensus       336 LCvcWSPDG---KyIvtGGEDDLVtVwSf~erRVVA-------RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  336 LCVCWSPDG---KYIVTGGEDDLVTVWSFEERRVVA-------RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEEEcCCc---cEEEecCCcceEEEEEeccceEEE-------eccccccceeeEeecc
Confidence            999999999   899999999999999998776544       3468999999999983

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.57  E-value=8e-13  Score=134.60  Aligned_cols=251  Identities=16%  Similarity=0.156  Sum_probs=165.9

Q ss_pred             CCCCCCceeEEEecCC-CeEEEEeecCCCCCeEEEEecCCCCCc----eeEEeecCCCCcccceeEEEEeCCCCCEEEEE
Q 009203          271 PKHRRWPEDIAWHPQG-NSLFSAHTADSGDSQISVLNLNKTKGR----ACVTFLDDKPHVKGIINSIIFLPWENPCFATG  345 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  345 (540)
                      ..|...|..++.++.. .++++|    +.||+|++||...-...    ....+...   ..+.+.++...+ .++.+|.+
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~Fvsg----S~DGtVKvW~~~k~~~~~~s~rS~ltys~---~~sr~~~vt~~~-~~~~~Av~ 1116 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSG----SDDGTVKVWNLRKLEGEGGSARSELTYSP---EGSRVEKVTMCG-NGDQFAVS 1116 (1431)
T ss_pred             hhccccccceeecCCCCceEEEe----cCCceEEEeeehhhhcCcceeeeeEEEec---cCCceEEEEecc-CCCeEEEE
Confidence            4677888888887755 899999    99999999998753221    11112211   246789999999 99999999


Q ss_pred             ecCCcEEEEecCCCCCccc--cc-eeecccCCcce-eEEEecc-CCC-EEEEEeCCCeEEEEECCCCCeeeeec---cCc
Q 009203          346 GSDHAVVLWSERDAEDSWK--PK-ALHRNLHSSAV-MGVAGMQ-QKQ-IVLSAGADKRIIGFDAGVGRADFKHQ---IES  416 (540)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~--~~-~~~~~~~~~~v-~~l~~s~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~  416 (540)
                      +.||.|++.+++.......  .. ........+.+ ..-+|.. .+. .++.+...+.|..||++........+   ..+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            9999999999976221000  00 01111122333 3334432 233 78888889999999999876654433   357


Q ss_pred             cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC---CEEEEEe--CCCcE
Q 009203          417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG---LYITSGS--ADPVI  491 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~sg~--~dg~i  491 (540)
                      .+.+++.+|.+   .+++.|+..|.+.+||++-+.. ...+.     .++..++..+..+|-.   .+.++++  ..+.|
T Consensus      1197 ~vTSi~idp~~---~WlviGts~G~l~lWDLRF~~~-i~sw~-----~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1197 LVTSIVIDPWC---NWLVIGTSRGQLVLWDLRFRVP-ILSWE-----HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred             ceeEEEecCCc---eEEEEecCCceEEEEEeecCce-eeccc-----CcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence            78899999987   7999999999999999985543 22221     2345678888777633   4555444  57889


Q ss_pred             EEEeccCCCCccccccccc-------------------ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          492 HLFDIRYSANKPSQSIRAH-------------------QKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       492 ~iwd~~~~~~~~~~~~~~h-------------------~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .+|++.++.  ...++...                   .-......+..-+.++.+|+.|+.|+.||.
T Consensus      1268 s~wn~~~g~--~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1268 STWNMETGL--RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             eeeecccCc--ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence            999999742  22222111                   111122333344568999999999999985

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=1.5e-12  Score=113.87  Aligned_cols=233  Identities=14%  Similarity=0.204  Sum_probs=154.3

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEE-EEecC------C
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSD------H  349 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~d------g  349 (540)
                      ..+++|+.|...++++     .|.-.+||+.+.-+.........+    .-.+.-+-|   ..++|+ .|+.+      .
T Consensus         8 ~lsvs~NQD~ScFava-----~~~Gfriyn~~P~ke~~~r~~~~~----G~~~veMLf---R~N~laLVGGg~~pky~pN   75 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVA-----TDTGFRIYNCDPFKESASRQFIDG----GFKIVEMLF---RSNYLALVGGGSRPKYPPN   75 (346)
T ss_pred             eeEEEEccCCceEEEE-----ecCceEEEecCchhhhhhhccccC----chhhhhHhh---hhceEEEecCCCCCCCCCc
Confidence            4569999999999987     455589999885321111111111    011222333   223443 34332      4


Q ss_pred             cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC-CCCeeeeecc---CccEEEEeecC
Q 009203          350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG-VGRADFKHQI---ESKCMSVLPNP  425 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~---~~~~~~~~~~~  425 (540)
                      .|.|||=....+      +.......+|.++.+.+  ..|++.- .+.|++|... +.+.+.....   +....++....
T Consensus        76 kviIWDD~k~~~------i~el~f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~  146 (346)
T KOG2111|consen   76 KVIIWDDLKERC------IIELSFNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS  146 (346)
T ss_pred             eEEEEecccCcE------EEEEEeccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence            699999444433      22223668899999986  4455443 4689999987 3444443322   23334444333


Q ss_pred             CCCCceEEEE-EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCc-EEEEeccCCCCcc
Q 009203          426 CDFNLFMVQT-GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPV-IHLFDIRYSANKP  503 (540)
Q Consensus       426 ~~~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~-i~iwd~~~~~~~~  503 (540)
                      ..   .+|+. |..-|.|+|-|+......     .......|.+.|.|++.+-+|..+||++..|+ |||||..+  +.+
T Consensus       147 ~k---~~LafPg~k~GqvQi~dL~~~~~~-----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~--g~~  216 (346)
T KOG2111|consen  147 NK---SLLAFPGFKTGQVQIVDLASTKPN-----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED--GTL  216 (346)
T ss_pred             Cc---eEEEcCCCccceEEEEEhhhcCcC-----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC--CcE
Confidence            32   34443 556799999999865531     11245789999999999999999999999997 78999998  777


Q ss_pred             cccccc--cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          504 SQSIRA--HQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       504 ~~~~~~--h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +..++.  ....|.+|+|||++.+|+.+|+-|+|+|+.|
T Consensus       217 l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  217 LQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             eeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence            777763  2347999999999999999999999999864

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.56  E-value=5.8e-13  Score=117.53  Aligned_cols=248  Identities=11%  Similarity=0.127  Sum_probs=172.4

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCC-CCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS-RGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      .++||.+.|++...-| ...-+++.+.|.++|||--.+ ++.-..+..       ....+++++.+.++...|+.+    
T Consensus        19 ~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-------~mP~~~~~~~y~~e~~~L~vg----   86 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-------YMPSPCSAMEYVSESRRLYVG----   86 (404)
T ss_pred             hhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhh-------hCCCCceEeeeeccceEEEEE----
Confidence            4679999999988888 577899999999999996443 332222211       234668999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      -.+|++.-+.+...  ............|.+.+..+-|+- ...++++.+.|..+.---.+.+..+....      ....
T Consensus        87 ~~ngtvtefs~sed--fnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~------~~~~  157 (404)
T KOG1409|consen   87 QDNGTVTEFALSED--FNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYN------FETP  157 (404)
T ss_pred             EecceEEEEEhhhh--hhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceE------eecc
Confidence            89999998877643  122333333445788999999998 88899999998877544444443211000      1111


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCC--Ceee-eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVG--RADF-KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      .+++.|.-  .+.+.|...|.|.+-.+...  ..+. ...+...+.+..|.+.+   ..+.+|..|..+.+||+....-.
T Consensus       158 ~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~---~~LfSg~~d~~vi~wdigg~~g~  232 (404)
T KOG1409|consen  158 ASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ---RLLFSGASDHSVIMWDIGGRKGT  232 (404)
T ss_pred             CCCCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC---cEEEeccccCceEEEeccCCcce
Confidence            22222221  14555666666555444332  2233 34455677889999877   79999999999999999865543


Q ss_pred             eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      ..      ++.+|...|..+..-+.-+.+++++.||.|.+|+++
T Consensus       233 ~~------el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  233 AY------ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             ee------eeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            33      557888899999888888899999999999999997

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.55  E-value=1.6e-12  Score=112.39  Aligned_cols=271  Identities=15%  Similarity=0.167  Sum_probs=178.7

Q ss_pred             CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec---CCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeec
Q 009203          245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP---QGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLD  320 (540)
Q Consensus       245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~---~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~  320 (540)
                      -|.+.+|++...+... + ....   ..-...+..+.|.-   +|. .++-+    ...|.|.++..........+.-+.
T Consensus        45 ~Gkl~Lys~~d~~~~~-l-~~~q---~~dts~~~dm~w~~~~~~g~~~l~~a----~a~G~i~~~r~~~~~ss~~L~~ls  115 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSP-L-DTLQ---CTDTSTEFDMLWRIRETDGDFNLLDA----HARGQIQLYRNDEDESSVHLRGLS  115 (339)
T ss_pred             ccceEEEeecccccCc-c-ceee---eecccccceeeeeeccCCccceeeec----cccceEEEEeeccceeeeeecccc
Confidence            3677888887765443 1 1111   12234466777753   444 45555    788999999876542222222222


Q ss_pred             CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCCCeEE
Q 009203          321 DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRII  399 (540)
Q Consensus       321 ~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~  399 (540)
                      ...-......++.|++ .+..++++..+|.+.+-+......   ......+.|.-.+....|+. +.+++++|+.|+.+.
T Consensus       116 ~~ki~~~~~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~l---e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~  191 (339)
T KOG0280|consen  116 SKKISVVEALSLDIST-SGTKIFVSDSRGSISGVYETEMVL---EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLS  191 (339)
T ss_pred             hhhhhheeeeEEEeec-cCceEEEEcCCCcEEEEecceeee---eecccccccceeeeeeecccCCCceEEecCCCceEE
Confidence            2111111245788998 888899999999998665554432   12223356888999999965 457899999999999


Q ss_pred             EEECCC-CCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          400 GFDAGV-GRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       400 iwd~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      .||+|. ++.+..  ..+...+.++..+|..+  .++++|+.|..|++||.++...++..       ..-.+.|+.+.++
T Consensus       192 ~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~--~~I~TGsYDe~i~~~DtRnm~kPl~~-------~~v~GGVWRi~~~  262 (339)
T KOG0280|consen  192 CWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP--TYIATGSYDECIRVLDTRNMGKPLFK-------AKVGGGVWRIKHH  262 (339)
T ss_pred             EEEecCCcceeeecceeeecceEEEecCCCCC--ceEEEeccccceeeeehhcccCcccc-------CccccceEEEEec
Confidence            999994 333333  33457788888887654  59999999999999999977665532       2234789999999


Q ss_pred             CC--CCEEEEEeCCCcEEEEeccCCCCc---ccccccccccceeEEEEcCCCCEEEEEE-cCCcEE-EE
Q 009203          477 PD--GLYITSGSADPVIHLFDIRYSANK---PSQSIRAHQKRVFKAVWHYSHPLLISIS-SDLNIG-LH  538 (540)
Q Consensus       477 p~--g~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~h~~~i~~l~~s~~~~~l~s~~-~dg~v~-iw  538 (540)
                      |.  +..|+++-.+| .+|-+.+....+   .+...+.|.+-...-.|.....+|+||+ +|+.++ +|
T Consensus       263 p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  263 PEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             chhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence            94  34555555555 778887764334   4445567887788888865556788875 677755 76

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=9.2e-13  Score=123.79  Aligned_cols=269  Identities=13%  Similarity=0.150  Sum_probs=174.5

Q ss_pred             ceEEEEEcCCCCCcceeecccc----------------cCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC
Q 009203          246 GVIRLWQLQSRGSGASLLSTTD----------------CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK  309 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~----------------~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~  309 (540)
                      +.|+||++..++.+........                .....|...-+.|..+|||+++++.   |...-.|++||+..
T Consensus         7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAt---G~YKP~ikvydlan   83 (703)
T KOG2321|consen    7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLAT---GTYKPQIKVYDLAN   83 (703)
T ss_pred             CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEe---cccCCceEEEEccc
Confidence            3588888877665443322000                0002567778899999999977655   37889999999985


Q ss_pred             CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEE
Q 009203          310 TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV  389 (540)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l  389 (540)
                      -.    +. ++.  |..+.+..+....+|-..++.-..|.+|.+........     .+.   -...-.+++++.-..-|
T Consensus        84 LS----LK-FER--hlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy-----~~R---IP~~GRDm~y~~~scDl  148 (703)
T KOG2321|consen   84 LS----LK-FER--HLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY-----RTR---IPKFGRDMKYHKPSCDL  148 (703)
T ss_pred             ce----ee-eee--cccccceeEEEeccchhhheEeecCceeeehhhcCeee-----eee---cCcCCccccccCCCccE
Confidence            31    22 221  22233333333332555566667788877654433211     000   11223456665433445


Q ss_pred             EEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcccc
Q 009203          390 LSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQS  468 (540)
Q Consensus       390 ~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  468 (540)
                      ++++....|+-+++..|..+..+... +.+.++..++..   .+|++|+.+|.|.+||.++...... +........|.+
T Consensus       149 y~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h---gLla~Gt~~g~VEfwDpR~ksrv~~-l~~~~~v~s~pg  224 (703)
T KOG2321|consen  149 YLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH---GLLACGTEDGVVEFWDPRDKSRVGT-LDAASSVNSHPG  224 (703)
T ss_pred             EEeecCcceEEEEccccccccccccccccceeeeecCcc---ceEEecccCceEEEecchhhhhhee-eecccccCCCcc
Confidence            55555568999999999988877766 556677778776   5899999999999999998764332 222222333433


Q ss_pred             -----CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc-cccccceeEEEEcCCC--CEEEEEEcCCcEEEEe
Q 009203          469 -----ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSH--PLLISISSDLNIGLHK  539 (540)
Q Consensus       469 -----~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~--~~l~s~~~dg~v~iw~  539 (540)
                           .|+++.|+.+|-.+++|..+|.+.|||++.  .+++..- .+..-+|..+.|.+.+  +.|+|. ....++|||
T Consensus       225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa--~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd  300 (703)
T KOG2321|consen  225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA--SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWD  300 (703)
T ss_pred             ccccCcceEEEecCCceeEEeeccCCcEEEEEccc--CCceeecccCCccceeeecccccCCCceEEec-chHHhhhcc
Confidence                 499999999999999999999999999997  4444332 2334589999997763  456655 457889997

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.2e-11  Score=116.38  Aligned_cols=277  Identities=12%  Similarity=0.141  Sum_probs=186.4

Q ss_pred             CceEEEEEecCCCcEEEEE-----eC-----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEe
Q 009203          224 RKLRSLSLNPVNEQLFVTS-----AL-----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAH  293 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg-----~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~  293 (540)
                      ..++++.|+| .+.+|.|-     ..     .-.+++|++.++.....+...       .... ++..|+.|..+.+-  
T Consensus        74 ~~~~~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k-------~Q~~-W~~qfs~dEsl~ar--  142 (566)
T KOG2315|consen   74 KKTYDLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKK-------MQNG-WVPQFSIDESLAAR--  142 (566)
T ss_pred             ceeeeeeecc-cccccccccccccccCCCCCCCceeeeeeccceehhheehh-------hhcC-cccccccchhhhhh--
Confidence            3789999999 58888873     11     245779999985444444321       1121 57899988765544  


Q ss_pred             ecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-CCCEEEE-----EecCCcEEEEecCCCCCcc--cc
Q 009203          294 TADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-ENPCFAT-----GGSDHAVVLWSERDAEDSW--KP  365 (540)
Q Consensus       294 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s-----~~~dg~i~iwd~~~~~~~~--~~  365 (540)
                         -..+.+.+|++...  ......+.     ...|..+.++|. ....+++     ++.-+.|+||.........  ..
T Consensus       143 ---lv~nev~f~~~~~f--~~~~~kl~-----~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~  212 (566)
T KOG2315|consen  143 ---LVSNEVQFYDLGSF--KTIQHKLS-----VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVAN  212 (566)
T ss_pred             ---hhcceEEEEecCCc--cceeeeee-----ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhh
Confidence               46788999999863  22333332     355899999983 2333333     2445679999887322100  01


Q ss_pred             ceeecccCCcceeEEEeccCCCEEEE-Ee--CC---------CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEE
Q 009203          366 KALHRNLHSSAVMGVAGMQQKQIVLS-AG--AD---------KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       366 ~~~~~~~~~~~v~~l~~s~~~~~l~~-~~--~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  433 (540)
                      +.+    ....=..+.|++-|.-|++ ++  -|         .+++++++....+.......+++.++.|+|++.. ..+
T Consensus       213 ksF----Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E-F~V  287 (566)
T KOG2315|consen  213 KSF----FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE-FAV  287 (566)
T ss_pred             ccc----cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE-EEE
Confidence            111    1222345778876654332 22  12         3688888885555666777899999999998854 466


Q ss_pred             EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeccCCCCccccccccc
Q 009203          434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---PVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      +.|..-..+.|||++..  ++..+        -.++=+++-|+|.|++|+.+|-+   |.|-|||+.+  .+++..+..-
T Consensus       288 vyGfMPAkvtifnlr~~--~v~df--------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~  355 (566)
T KOG2315|consen  288 VYGFMPAKVTIFNLRGK--PVFDF--------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAA  355 (566)
T ss_pred             EEecccceEEEEcCCCC--EeEeC--------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccccC
Confidence            67888889999999843  22222        24567889999999999887754   8999999998  7888877754


Q ss_pred             ccceeEEEEcCCCCEEEEEE------cCCcEEEEeC
Q 009203          511 QKRVFKAVWHYSHPLLISIS------SDLNIGLHKI  540 (540)
Q Consensus       511 ~~~i~~l~~s~~~~~l~s~~------~dg~v~iw~l  540 (540)
                      .  -+-+.|+|||.+|+|+.      .|+.++||++
T Consensus       356 ~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  356 N--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             C--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            4  45689999999998886      4678999985

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=3.3e-12  Score=126.95  Aligned_cols=233  Identities=15%  Similarity=0.135  Sum_probs=145.7

Q ss_pred             CeEEEeccc----hhcccccCceEEEEEecCCCcEEEEEeCC---ceEEEEEcCCCCCcceeecccccCCCCCCCCceeE
Q 009203          208 ATIHCHTSN----HVSSLHKRKLRSLSLNPVNEQLFVTSALD---GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDI  280 (540)
Q Consensus       208 ~~i~~~~~~----~~~~~h~~~V~~l~~spd~~~~l~tg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  280 (540)
                      ..|.+||..    +.+..|...+.+.+|+|| |+.|+..+.+   ..|.+||+.++... .+ .       .+.....++
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~-~l-~-------~~~g~~~~~  253 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQRE-LV-A-------SFRGINGAP  253 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEE-Ee-c-------cCCCCccCc
Confidence            457777643    345667788999999997 7777776643   46999999876531 11 1       122334578


Q ss_pred             EEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCc--EEEEecC
Q 009203          281 AWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHA--VVLWSER  357 (540)
Q Consensus       281 ~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~--i~iwd~~  357 (540)
                      +|+|||+.|+..... ..+..|.+||+.++.    ...+..   +.......+|+| +++.|+.++. +|.  |+++|+.
T Consensus       254 ~~SpDG~~l~~~~s~-~g~~~Iy~~d~~~g~----~~~lt~---~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~  324 (433)
T PRK04922        254 SFSPDGRRLALTLSR-DGNPEIYVMDLGSRQ----LTRLTN---HFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAAS  324 (433)
T ss_pred             eECCCCCEEEEEEeC-CCCceEEEEECCCCC----eEECcc---CCCCccceEECC-CCCEEEEEECCCCCceEEEEECC
Confidence            999999977643211 223469999998762    222222   233456789999 8888877664 444  6677776


Q ss_pred             CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC---eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203          358 DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK---RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  434 (540)
                      +++.    ..+..  +.......+|+|+|+.|+..+.++   .|.+||+.++...... .........|+|++   .+++
T Consensus       325 ~g~~----~~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~~~~~~~p~~spdG---~~i~  394 (433)
T PRK04922        325 GGSA----ERLTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-PGSLDESPSFAPNG---SMVL  394 (433)
T ss_pred             CCCe----EEeec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-CCCCCCCceECCCC---CEEE
Confidence            6652    33332  233455789999999998776543   6999999887654322 22234456888887   4444


Q ss_pred             EEcC---CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203          435 TGTP---GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP  477 (540)
Q Consensus       435 ~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  477 (540)
                      ..+.   .+.|.++++.....  .      .+..+.+.+...+|+|
T Consensus       395 ~~s~~~g~~~L~~~~~~g~~~--~------~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        395 YATREGGRGVLAAVSTDGRVR--Q------RLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEecCCceEEEEEECCCCce--E------EcccCCCCCCCCccCC
Confidence            4433   34577778754332  1      1222344566677776

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.52  E-value=9.1e-13  Score=114.58  Aligned_cols=148  Identities=18%  Similarity=0.241  Sum_probs=103.4

Q ss_pred             eEEEeccCCCEEEEEeC----------CCeEEEEECCC-CCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEE
Q 009203          378 MGVAGMQQKQIVLSAGA----------DKRIIGFDAGV-GRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRL  444 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~----------dg~i~iwd~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i  444 (540)
                      ..+.|+++|.+|++-..          -|...+|.++. +.....  ....+.+.++.|+|++.. ..++.|..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~-favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNE-FAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCE-EEEEEccCCcccEE
Confidence            46789999988776433          12344554432 222222  334456999999998743 23455667789999


Q ss_pred             EECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeccCCCCcccccccccccceeEEEEcC
Q 009203          445 YDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA---DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY  521 (540)
Q Consensus       445 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~  521 (540)
                      ||++ .. ....+        +...+..+.|||+|++|++++.   .|.|.+||++.  .+.+.... |. .++.++|+|
T Consensus        88 yd~~-~~-~i~~~--------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~~~-~~-~~t~~~WsP  153 (194)
T PF08662_consen   88 YDVK-GK-KIFSF--------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKISTFE-HS-DATDVEWSP  153 (194)
T ss_pred             EcCc-cc-EeEee--------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeeccc-cC-cEEEEEEcC
Confidence            9997 22 12211        2456788999999999999874   46799999996  66666655 33 478999999


Q ss_pred             CCCEEEEEEc------CCcEEEEeC
Q 009203          522 SHPLLISISS------DLNIGLHKI  540 (540)
Q Consensus       522 ~~~~l~s~~~------dg~v~iw~l  540 (540)
                      ||++|+++..      |..++||++
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEe
Confidence            9999999864      788999975

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.51  E-value=1.1e-12  Score=115.67  Aligned_cols=272  Identities=14%  Similarity=0.187  Sum_probs=173.1

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC-cceeecccccCC--------CCCCCCceeEEEecCCC--eEEEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS-GASLLSTTDCLS--------PKHRRWPEDIAWHPQGN--SLFSA  292 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~--------~~h~~~V~~~~~~~~~~--~l~s~  292 (540)
                      +-|.+|.|..+ |.+||||..+|.|.++.-..... ...+...+....        -.-...|..+.|.++++  .++..
T Consensus        26 diis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   26 DIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             cceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            56899999995 99999999999999997654332 111211110000        01135588999998766  34444


Q ss_pred             eecCCCCCeEEEEecCCCCCce---------------e--EEeec-------------CCCCcccceeEEEEeCCCCCEE
Q 009203          293 HTADSGDSQISVLNLNKTKGRA---------------C--VTFLD-------------DKPHVKGIINSIIFLPWENPCF  342 (540)
Q Consensus       293 ~~~~~~d~~i~vwd~~~~~~~~---------------~--~~~~~-------------~~~~~~~~v~~~~~~p~~~~~l  342 (540)
                          +.|.+|++|.+.......               .  +..+.             -...|...|++|.++. |...+
T Consensus       105 ----tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~  179 (433)
T KOG1354|consen  105 ----TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETF  179 (433)
T ss_pred             ----cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceE
Confidence                799999999886432111               0  00000             0114677799999998 88888


Q ss_pred             EEEecCCcEEEEecCCCCCccccceee---cccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeeccCccE
Q 009203          343 ATGGSDHAVVLWSERDAEDSWKPKALH---RNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQIESKC  418 (540)
Q Consensus       343 ~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  418 (540)
                      +++. |=.|.+|.++-....+.+.-+.   ...-+.-|++..|+|. -++++-.+..|+|++.|++....-.        
T Consensus       180 lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd--------  250 (433)
T KOG1354|consen  180 LSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD--------  250 (433)
T ss_pred             eecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc--------
Confidence            8765 6789999987543321111111   0112345788889884 4667778888999999998543210        


Q ss_pred             EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                                           ..-+++..........      -+.+--..|..+.|+++|+|+++-+. -+|++||++.
T Consensus       251 ---------------------~hsKlfEepedp~~rs------ffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm  302 (433)
T KOG1354|consen  251 ---------------------AHSKLFEEPEDPSSRS------FFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM  302 (433)
T ss_pred             ---------------------chhhhhccccCCcchh------hHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence                                 0111111110000000      11223357889999999999998743 6799999975


Q ss_pred             CCCccccccccccc------------ce---eEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          499 SANKPSQSIRAHQK------------RV---FKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       499 ~~~~~~~~~~~h~~------------~i---~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      . .+++.++..|..            .|   ..++|+-++.+++||+....+++++
T Consensus       303 e-~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  303 E-AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             c-CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence            4 567777765532            23   4688999999999999999999987

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.3e-11  Score=122.81  Aligned_cols=204  Identities=13%  Similarity=0.084  Sum_probs=134.6

Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---CCcEEEEecCCCCCccccceeecccCCc
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---DHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                      ...|.+||.+...    .+.+..   +...+.+.+|+| +++.|+..+.   +..|++||+.+++.    ..+.  .+.+
T Consensus       181 ~~~l~~~d~dg~~----~~~lt~---~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~--~~~g  246 (435)
T PRK05137        181 IKRLAIMDQDGAN----VRYLTD---GSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR----ELVG--NFPG  246 (435)
T ss_pred             ceEEEEECCCCCC----cEEEec---CCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE----EEee--cCCC
Confidence            3478889986432    222222   346799999999 9998887764   46899999988763    3332  2455


Q ss_pred             ceeEEEeccCCCEEE-EEeCCCe--EEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc-CCC--eEEEEECCC
Q 009203          376 AVMGVAGMQQKQIVL-SAGADKR--IIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT-PGR--QLRLYDIRL  449 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~v~i~d~~~  449 (540)
                      .+.+..|+|||+.|+ +.+.++.  |++||+.++................|+|++   ..|+..+ .+|  .|++||+.+
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG---~~i~f~s~~~g~~~Iy~~d~~g  323 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDG---SQIVFESDRSGSPQLYVMNADG  323 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCC---CEEEEEECCCCCCeEEEEECCC
Confidence            677899999998876 4455554  888899887764444344445568899987   4555444 333  688888876


Q ss_pred             CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEE
Q 009203          450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL  526 (540)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l  526 (540)
                      +.....        ..+...+....|+|||++|+..+.+   ..|.+||+...   ....+. ....+..+.|+|||+.|
T Consensus       324 ~~~~~l--------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---~~~~lt-~~~~~~~p~~spDG~~i  391 (435)
T PRK05137        324 SNPRRI--------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---GERILT-SGFLVEGPTWAPNGRVI  391 (435)
T ss_pred             CCeEEe--------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---ceEecc-CCCCCCCCeECCCCCEE
Confidence            543221        1123345678899999999876543   35788887642   222222 22246788999999987


Q ss_pred             EEEEc
Q 009203          527 ISISS  531 (540)
Q Consensus       527 ~s~~~  531 (540)
                      +..+.
T Consensus       392 ~~~~~  396 (435)
T PRK05137        392 MFFRQ  396 (435)
T ss_pred             EEEEc
Confidence            76554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=9.2e-12  Score=123.30  Aligned_cols=234  Identities=14%  Similarity=0.137  Sum_probs=140.2

Q ss_pred             CeEEEeccc----hhcccccCceEEEEEecCCCcEEEEEeCC---ceEEEEEcCCCCCcceeecccccCCCCCCCCceeE
Q 009203          208 ATIHCHTSN----HVSSLHKRKLRSLSLNPVNEQLFVTSALD---GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDI  280 (540)
Q Consensus       208 ~~i~~~~~~----~~~~~h~~~V~~l~~spd~~~~l~tg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  280 (540)
                      ..+.+++..    ..+..+...+.+.+|+|| |+.|+..+.+   ..|.+||+.+++.. .+ .       ...+.+.+.
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~~-~l-~-------~~~g~~~~~  245 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRRR-VV-A-------NFKGSNSAP  245 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCEE-Ee-e-------cCCCCccce
Confidence            345555543    335577889999999997 7777776543   35999999877532 12 1       122345689


Q ss_pred             EEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEec--C
Q 009203          281 AWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSE--R  357 (540)
Q Consensus       281 ~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~--~  357 (540)
                      +|+|||+.|+...   +.++...||.++.... . ...+..   +.+......|+| +|+.|+..+. +|...||.+  .
T Consensus       246 ~~SPDG~~la~~~---~~~g~~~Iy~~d~~~~-~-~~~lt~---~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~  316 (427)
T PRK02889        246 AWSPDGRTLAVAL---SRDGNSQIYTVNADGS-G-LRRLTQ---SSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPAS  316 (427)
T ss_pred             EECCCCCEEEEEE---ccCCCceEEEEECCCC-C-cEECCC---CCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECC
Confidence            9999999886431   6677766665542211 1 233332   234456788999 8988876654 456666654  4


Q ss_pred             CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC---eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203          358 DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK---RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  434 (540)
                      ++.    ...+..  .........|+|+|++|+..+.++   .|.+||+.++....... ........|+|++   ..|+
T Consensus       317 ~g~----~~~lt~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~~~~p~~spdg---~~l~  386 (427)
T PRK02889        317 GGA----AQRVTF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TTRDESPSFAPNG---RYIL  386 (427)
T ss_pred             CCc----eEEEec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CCCccCceECCCC---CEEE
Confidence            443    222322  223345678999999998877654   69999998876543322 2234567889987   4454


Q ss_pred             EEcC-CC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC
Q 009203          435 TGTP-GR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD  478 (540)
Q Consensus       435 ~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  478 (540)
                      ..+. .|  .+.+.++.... ..       .+..+.+.+...+|+|-
T Consensus       387 ~~~~~~g~~~l~~~~~~g~~-~~-------~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        387 YATQQGGRSVLAAVSSDGRI-KQ-------RLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEecCCCEEEEEEECCCCc-eE-------EeecCCCCCCCCccCCC
Confidence            4443 33  35555553221 11       12233445666777763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.49  E-value=6.1e-10  Score=100.06  Aligned_cols=281  Identities=12%  Similarity=0.113  Sum_probs=183.4

Q ss_pred             CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203          245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH  324 (540)
Q Consensus       245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  324 (540)
                      +.-|.+|++.+..........     -.+...++-++|+|++++|.++... +.+|.|..|.++...+  .+..+.....
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~-----v~~~~nptyl~~~~~~~~LY~v~~~-~~~ggvaay~iD~~~G--~Lt~ln~~~~   86 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL-----VAELGNPTYLAVNPDQRHLYVVNEP-GEEGGVAAYRIDPDDG--RLTFLNRQTL   86 (346)
T ss_pred             CCceEEEEEeCcccccchhhh-----ccccCCCceEEECCCCCEEEEEEec-CCcCcEEEEEEcCCCC--eEEEeecccc
Confidence            467999999854432222221     2445667889999999999988332 3468888888774311  1222222111


Q ss_pred             cccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeecccCCcc----------eeEEEeccCCCEEEEEe
Q 009203          325 VKGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHRNLHSSA----------VMGVAGMQQKQIVLSAG  393 (540)
Q Consensus       325 ~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----------v~~l~~s~~~~~l~~~~  393 (540)
                      ...+.+.+++++ ++++++++.. .|.|.++-++....++.....  ..|.+.          +....+.|++++|++..
T Consensus        87 ~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~--~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D  163 (346)
T COG2706          87 PGSPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQV--VKHTGSGPHERQESPHVHSANFTPDGRYLVVPD  163 (346)
T ss_pred             CCCCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceee--eecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence            223448899999 9988888764 478999999763332222111  224444          88899999999998876


Q ss_pred             C-CCeEEEEECCCCCeee----eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc----ccccC
Q 009203          394 A-DKRIIGFDAGVGRADF----KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW----KQESS  464 (540)
Q Consensus       394 ~-dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~----~~~~~  464 (540)
                      . ...|.+|++..|....    ....+....-+.|+|++.-  ..+++--+++|-+|........+..+..    ...+.
T Consensus       164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~--aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~  241 (346)
T COG2706         164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKY--AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT  241 (346)
T ss_pred             cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcE--EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence            5 3379999999876632    2355677789999998832  2344556899999999875322222211    11222


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCCCCcc--cccccccccceeEEEEcCCCCEEEEEEcC-CcEEEEe
Q 009203          465 ESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYSANKP--SQSIRAHQKRVFKAVWHYSHPLLISISSD-LNIGLHK  539 (540)
Q Consensus       465 ~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~~~~--~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-g~v~iw~  539 (540)
                      + ......|.+++||++|.++.. ...|.+|.+....+++  +.....+......+.|+++|++|+++..| ..|.+|.
T Consensus       242 g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~  319 (346)
T COG2706         242 G-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE  319 (346)
T ss_pred             C-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence            2 345778999999999988753 3478899888643331  22222344457899999999999888766 4577764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.7e-11  Score=122.30  Aligned_cols=237  Identities=13%  Similarity=0.125  Sum_probs=146.0

Q ss_pred             eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcc
Q 009203          247 VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVK  326 (540)
Q Consensus       247 ~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  326 (540)
                      .|.++|..... ...+        ..+...+...+|+|||+.|+..... .....|.+||+.++..   .. +..   ..
T Consensus       180 ~l~~~d~~g~~-~~~l--------~~~~~~~~~p~wSpDG~~la~~s~~-~~~~~l~~~~l~~g~~---~~-l~~---~~  242 (430)
T PRK00178        180 TLQRSDYDGAR-AVTL--------LQSREPILSPRWSPDGKRIAYVSFE-QKRPRIFVQNLDTGRR---EQ-ITN---FE  242 (430)
T ss_pred             EEEEECCCCCC-ceEE--------ecCCCceeeeeECCCCCEEEEEEcC-CCCCEEEEEECCCCCE---EE-ccC---CC
Confidence            46677776433 2333        2445668899999999998876211 1235799999987632   22 221   12


Q ss_pred             cceeEEEEeCCCCCEEE-EEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-C--CeEEE
Q 009203          327 GIINSIIFLPWENPCFA-TGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-D--KRIIG  400 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d--g~i~i  400 (540)
                      +.+...+|+| +++.|+ +...+|  .|++||+.++..    ..+.  .+........|+|||+.|+..+. +  ..|++
T Consensus       243 g~~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~----~~lt--~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~  315 (430)
T PRK00178        243 GLNGAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQL----SRVT--NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK  315 (430)
T ss_pred             CCcCCeEECC-CCCEEEEEEccCCCceEEEEECCCCCe----EEcc--cCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            3455789999 888776 444454  588889988763    2232  24445667899999998877664 3  35888


Q ss_pred             EECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcC-CC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203          401 FDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTP-GR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP  477 (540)
Q Consensus       401 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  477 (540)
                      +|+.+++...............|+|++   ..++..+. ++  .|.+||+.++......       .  ........|+|
T Consensus       316 ~d~~~g~~~~lt~~~~~~~~~~~Spdg---~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-------~--~~~~~~p~~sp  383 (430)
T PRK00178        316 VNVNGGRAERVTFVGNYNARPRLSADG---KTLVMVHRQDGNFHVAAQDLQRGSVRILT-------D--TSLDESPSVAP  383 (430)
T ss_pred             EECCCCCEEEeecCCCCccceEECCCC---CEEEEEEccCCceEEEEEECCCCCEEEcc-------C--CCCCCCceECC
Confidence            888877653332222233456788887   34544433 33  5888999876532211       0  11122458999


Q ss_pred             CCCEEEEEeCC-C--cEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203          478 DGLYITSGSAD-P--VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       478 ~g~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      ||++|+..+.+ |  .|+++++.   +.....+..+.+.+...+|+|-
T Consensus       384 dg~~i~~~~~~~g~~~l~~~~~~---g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        384 NGTMLIYATRQQGRGVLMLVSIN---GRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCCEEEEEEecCCceEEEEEECC---CCceEECcCCCCCcCCCccCCC
Confidence            99998876543 3  46666665   3444445555566788888873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.48  E-value=1.3e-11  Score=123.01  Aligned_cols=235  Identities=14%  Similarity=0.128  Sum_probs=146.2

Q ss_pred             ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203          246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV  325 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  325 (540)
                      ..|.++|..... ...+        ..+...+...+|+|||++|+.+... .....|++||+.++..   ... ..   +
T Consensus       170 ~~l~~~d~~g~~-~~~l--------~~~~~~~~~p~~Spdg~~la~~~~~-~~~~~i~v~d~~~g~~---~~~-~~---~  232 (417)
T TIGR02800       170 YELQVADYDGAN-PQTI--------TRSREPILSPAWSPDGQKLAYVSFE-SGKPEIYVQDLATGQR---EKV-AS---F  232 (417)
T ss_pred             ceEEEEcCCCCC-CEEe--------ecCCCceecccCCCCCCEEEEEEcC-CCCcEEEEEECCCCCE---EEe-ec---C
Confidence            357777775332 2333        2344567889999999999887321 2336899999987632   211 11   2


Q ss_pred             ccceeEEEEeCCCCCEEE-EEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-C--eEE
Q 009203          326 KGIINSIIFLPWENPCFA-TGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-K--RII  399 (540)
Q Consensus       326 ~~~v~~~~~~p~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~  399 (540)
                      .+.+.+++|+| +++.|+ +.+.++  .|++||+.++..    ..+.  .+........|+|+|+.|+.++.. +  .|+
T Consensus       233 ~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~----~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy  305 (417)
T TIGR02800       233 PGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQL----TRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIY  305 (417)
T ss_pred             CCCccceEECC-CCCEEEEEECCCCCccEEEEECCCCCE----EECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEE
Confidence            34466789999 887665 444444  588899987652    2222  233445577899999988776653 2  688


Q ss_pred             EEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC---eEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          400 GFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR---QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       400 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      ++|+.+++...............|+|++   .+++.++.++   .|.+||+.++.....        .. ........|+
T Consensus       306 ~~d~~~~~~~~l~~~~~~~~~~~~spdg---~~i~~~~~~~~~~~i~~~d~~~~~~~~l--------~~-~~~~~~p~~s  373 (417)
T TIGR02800       306 MMDADGGEVRRLTFRGGYNASPSWSPDG---DLIAFVHREGGGFNIAVMDLDGGGERVL--------TD-TGLDESPSFA  373 (417)
T ss_pred             EEECCCCCEEEeecCCCCccCeEECCCC---CEEEEEEccCCceEEEEEeCCCCCeEEc--------cC-CCCCCCceEC
Confidence            8898877654433344555677889887   5666666554   789999887543211        11 1123456899


Q ss_pred             CCCCEEEEEeCCC---cEEEEeccCCCCcccccccccccceeEEEE
Q 009203          477 PDGLYITSGSADP---VIHLFDIRYSANKPSQSIRAHQKRVFKAVW  519 (540)
Q Consensus       477 p~g~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~  519 (540)
                      |||++|+..+.++   .+++.+..   +.....+..+.+.+..++|
T Consensus       374 pdg~~l~~~~~~~~~~~l~~~~~~---g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       374 PNGRMILYATTRGGRGVLGLVSTD---GRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             CCCCEEEEEEeCCCcEEEEEEECC---CceeeECCCCCCCcCCCCC
Confidence            9999988776654   34555544   4444444444455555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.48  E-value=5.1e-12  Score=109.89  Aligned_cols=156  Identities=12%  Similarity=0.177  Sum_probs=106.2

Q ss_pred             eEEEEeCCCCCEEEEEec----------CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe--CCCe
Q 009203          330 NSIIFLPWENPCFATGGS----------DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG--ADKR  397 (540)
Q Consensus       330 ~~~~~~p~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~--~dg~  397 (540)
                      ..+.|+| .|+.|+.-..          -+...+|.++.....  ...+. ....++|.+++|+|+|+.+++..  .++.
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~--~~~i~-l~~~~~I~~~~WsP~g~~favi~g~~~~~   84 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP--VESIE-LKKEGPIHDVAWSPNGNEFAVIYGSMPAK   84 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc--cceee-ccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence            4677888 7776654332          134556666443321  12222 12345799999999999876653  5678


Q ss_pred             EEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcC---CCeEEEEECCCCcceeeeeccccccCccccCeEEEE
Q 009203          398 IIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTP---GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQS  474 (540)
Q Consensus       398 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~  474 (540)
                      |.+||++ ++.+..+. ......+.|+|.+   .++++++.   .|.|.+||+++.+....         .....++.++
T Consensus        85 v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G---~~l~~~g~~n~~G~l~~wd~~~~~~i~~---------~~~~~~t~~~  150 (194)
T PF08662_consen   85 VTLYDVK-GKKIFSFG-TQPRNTISWSPDG---RFLVLAGFGNLNGDLEFWDVRKKKKIST---------FEHSDATDVE  150 (194)
T ss_pred             cEEEcCc-ccEeEeec-CCCceEEEECCCC---CEEEEEEccCCCcEEEEEECCCCEEeec---------cccCcEEEEE
Confidence            9999997 55555544 4566789999998   67777653   46799999996664322         1223578999


Q ss_pred             EcCCCCEEEEEeC------CCcEEEEeccCCCCccccc
Q 009203          475 WSPDGLYITSGSA------DPVIHLFDIRYSANKPSQS  506 (540)
Q Consensus       475 ~sp~g~~l~sg~~------dg~i~iwd~~~~~~~~~~~  506 (540)
                      |||||++|+++..      |+.++||++.   ++.+..
T Consensus       151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~---G~~l~~  185 (194)
T PF08662_consen  151 WSPDGRYLATATTSPRLRVDNGFKIWSFQ---GRLLYK  185 (194)
T ss_pred             EcCCCCEEEEEEeccceeccccEEEEEec---CeEeEe
Confidence            9999999998864      7889999997   554443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.46  E-value=4.8e-11  Score=114.41  Aligned_cols=276  Identities=12%  Similarity=0.044  Sum_probs=166.0

Q ss_pred             CcEE-EEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          236 EQLF-VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       236 ~~~l-~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      ++++ ++-..+|.|.|.|..+.+.+.++...        ...-..+.|+|||++++++    +.||.|.++|+.+.   +
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~--------~~~h~~~~~s~Dgr~~yv~----~rdg~vsviD~~~~---~   69 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTG--------GAPHAGLKFSPDGRYLYVA----NRDGTVSVIDLATG---K   69 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-S--------TTEEEEEE-TT-SSEEEEE----ETTSEEEEEETTSS---S
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCC--------CCceeEEEecCCCCEEEEE----cCCCeEEEEECCcc---c
Confidence            3444 45567899999999998877776421        1122347899999999998    88999999999987   3


Q ss_pred             eEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeec--ccCCcceeEEEeccCCCEEEE
Q 009203          315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHR--NLHSSAVMGVAGMQQKQIVLS  391 (540)
Q Consensus       315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~  391 (540)
                      .+..+..    .....++++++ +|++++++. .++.+.++|..+.+.+........  ......+.++..+|....++.
T Consensus        70 ~v~~i~~----G~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv  144 (369)
T PF02239_consen   70 VVATIKV----GGNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV  144 (369)
T ss_dssp             EEEEEE-----SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred             EEEEEec----CCCcceEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence            4555543    34578999999 999887664 689999999999876322222111  113456788888888885555


Q ss_pred             E-eCCCeEEEEECCCCCeee--eeccCccEEEEeecCCCCCceE-EEEEcCCCeEEEEECCCCcceeeeeccccccCccc
Q 009203          392 A-GADKRIIGFDAGVGRADF--KHQIESKCMSVLPNPCDFNLFM-VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ  467 (540)
Q Consensus       392 ~-~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  467 (540)
                      . -..+.|.+.|......+.  ............++|++   ++ +++...++.|-++|..+++.....- .  ....|.
T Consensus       145 ~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg---ry~~va~~~sn~i~viD~~~~k~v~~i~-~--g~~p~~  218 (369)
T PF02239_consen  145 NLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG---RYFLVAANGSNKIAVIDTKTGKLVALID-T--GKKPHP  218 (369)
T ss_dssp             EETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS---SEEEEEEGGGTEEEEEETTTTEEEEEEE----SSSBEE
T ss_pred             EEccCCeEEEEEeccccccceeeecccccccccccCccc---ceeeecccccceeEEEeeccceEEEEee-c--cccccc
Confidence            4 445889999988765443  34556677788999987   44 4555677899999999876543211 0  112344


Q ss_pred             cCeEEEE-------Ec--CCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE----EcCCc
Q 009203          468 SALINQS-------WS--PDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI----SSDLN  534 (540)
Q Consensus       468 ~~v~~~~-------~s--p~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~----~~dg~  534 (540)
                      .++..+-       |.  ..+...++.-....+.+||...  .+.+.++....++ .-+..+|+++++...    ..+++
T Consensus       219 ~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~--wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~  295 (369)
T PF02239_consen  219 GPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA--WKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADT  295 (369)
T ss_dssp             TTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB--TSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-
T ss_pred             cccccccCCCcceEEeeccccceecccccCCccccchhhc--CeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCce
Confidence            4444331       21  1223332222234455677776  6778888876666 778889999999887    44588


Q ss_pred             EEEEeC
Q 009203          535 IGLHKI  540 (540)
Q Consensus       535 v~iw~l  540 (540)
                      |.|+|.
T Consensus       296 v~viD~  301 (369)
T PF02239_consen  296 VQVIDK  301 (369)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            998874

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=9.8e-12  Score=119.86  Aligned_cols=288  Identities=13%  Similarity=0.154  Sum_probs=200.4

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeec-------ccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLS-------TTDCLSPKHRRWPEDIAWHPQGNSLFSAHT  294 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~-------~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~  294 (540)
                      ......|++|+. ...++|+|+.||.++|-.+.+...-.....       .......||...|.-+.|+.+.+.|-+.  
T Consensus        13 nnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS--   89 (1189)
T KOG2041|consen   13 NNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS--   89 (1189)
T ss_pred             CCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc--
Confidence            345679999998 488999999999999998876432211111       1122336999999999999999999998  


Q ss_pred             cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203          295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                        ..+|.|.+|-+-.++  .+......  ..++.|.+++|+. +|..++....||.|.+=.++.... |...     -..
T Consensus        90 --Dt~GlIiVWmlykgs--W~EEMiNn--RnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRI-wgKe-----Lkg  156 (1189)
T KOG2041|consen   90 --DTSGLIIVWMLYKGS--WCEEMINN--RNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRI-WGKE-----LKG  156 (1189)
T ss_pred             --CCCceEEEEeeeccc--HHHHHhhC--cCccEEEEEEEcC-CCcEEEEEEccCCEEEEeecccee-cchh-----cch
Confidence              999999999887663  22222222  1256799999999 999999999999998877766542 1111     122


Q ss_pred             cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--------eee----eccCccEEEEeec-----CCCCCceEEEEEc
Q 009203          375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--------DFK----HQIESKCMSVLPN-----PCDFNLFMVQTGT  437 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~----~~~~~~~~~~~~~-----~~~~~~~~l~~~~  437 (540)
                      .....+.|++|...++.+-.+|.+.+||....-.        +..    ...+..+..+.|.     |..+....++++.
T Consensus       157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy  236 (1189)
T KOG2041|consen  157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY  236 (1189)
T ss_pred             heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence            2345788999999999999999999999864211        100    1112223344443     1222335889999


Q ss_pred             CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---------CcEEEEeccCCCCccccccc
Q 009203          438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---------PVIHLFDIRYSANKPSQSIR  508 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~  508 (540)
                      .+|.+.+..-.+...+...        ...-.+..+.|+++|.+||+++.+         +.|.+|..-   +..+.+++
T Consensus       237 ~nGr~QiMR~eND~~Pvv~--------dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~---G~i~gtlk  305 (1189)
T KOG2041|consen  237 ANGRMQIMRSENDPEPVVV--------DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY---GHIVGTLK  305 (1189)
T ss_pred             cCceehhhhhcCCCCCeEE--------ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc---hhheEEEe
Confidence            9999988766554433321        122468889999999999998764         356666655   78888888


Q ss_pred             ccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203          509 AHQKRVFKAVWHYSHPLLISISSDLNIGL  537 (540)
Q Consensus       509 ~h~~~i~~l~~s~~~~~l~s~~~dg~v~i  537 (540)
                      .....|++++|-..|-.++.+ .|+.|.+
T Consensus       306 vpg~~It~lsWEg~gLriA~A-vdsfiyf  333 (1189)
T KOG2041|consen  306 VPGSCITGLSWEGTGLRIAIA-VDSFIYF  333 (1189)
T ss_pred             cCCceeeeeEEcCCceEEEEE-ecceEEE
Confidence            888899999998777666554 4666655

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=4.5e-11  Score=118.71  Aligned_cols=237  Identities=13%  Similarity=0.106  Sum_probs=144.2

Q ss_pred             eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcc
Q 009203          247 VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVK  326 (540)
Q Consensus       247 ~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  326 (540)
                      .+.++|...... ..+        ..+...+.+..|+|||+.|+..... .....|.+||+.++.. ..+..+.      
T Consensus       199 ~l~i~d~dG~~~-~~l--------~~~~~~~~~p~wSPDG~~La~~s~~-~g~~~L~~~dl~tg~~-~~lt~~~------  261 (448)
T PRK04792        199 QLMIADYDGYNE-QML--------LRSPEPLMSPAWSPDGRKLAYVSFE-NRKAEIFVQDIYTQVR-EKVTSFP------  261 (448)
T ss_pred             EEEEEeCCCCCc-eEe--------ecCCCcccCceECCCCCEEEEEEec-CCCcEEEEEECCCCCe-EEecCCC------
Confidence            566667654332 223        2344568889999999988876221 2234688999987632 2222221      


Q ss_pred             cceeEEEEeCCCCCEEEE-EecCCc--EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CC--eEEE
Q 009203          327 GIINSIIFLPWENPCFAT-GGSDHA--VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DK--RIIG  400 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg--~i~i  400 (540)
                      +.....+|+| +++.|+. .+.+|.  |++||+.+++.    ..+..  +.......+|+|||+.|+..+. ++  .|++
T Consensus       262 g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~~----~~lt~--~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~  334 (448)
T PRK04792        262 GINGAPRFSP-DGKKLALVLSKDGQPEIYVVDIATKAL----TRITR--HRAIDTEPSWHPDGKSLIFTSERGGKPQIYR  334 (448)
T ss_pred             CCcCCeeECC-CCCEEEEEEeCCCCeEEEEEECCCCCe----EECcc--CCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence            2345789999 8887764 555664  77888887752    33322  4445677899999998877654 33  5777


Q ss_pred             EECCCCCeeeeeccCccEEEEeecCCCCCceEEEE-EcCCC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203          401 FDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQT-GTPGR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP  477 (540)
Q Consensus       401 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  477 (540)
                      +|+.+++...............|+|++.   +++. ...++  .|.++|+.++......        .. .......|+|
T Consensus       335 ~dl~~g~~~~Lt~~g~~~~~~~~SpDG~---~l~~~~~~~g~~~I~~~dl~~g~~~~lt--------~~-~~d~~ps~sp  402 (448)
T PRK04792        335 VNLASGKVSRLTFEGEQNLGGSITPDGR---SMIMVNRTNGKFNIARQDLETGAMQVLT--------ST-RLDESPSVAP  402 (448)
T ss_pred             EECCCCCEEEEecCCCCCcCeeECCCCC---EEEEEEecCCceEEEEEECCCCCeEEcc--------CC-CCCCCceECC
Confidence            7888776543322222334567888873   4443 33344  4666787766532211        01 1112347999


Q ss_pred             CCCEEEEEeCC-Cc--EEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203          478 DGLYITSGSAD-PV--IHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       478 ~g~~l~sg~~d-g~--i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      ||++|+..+.+ |.  +++++.+   +.....+..+.+.+...+|+|-
T Consensus       403 dG~~I~~~~~~~g~~~l~~~~~~---G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        403 NGTMVIYSTTYQGKQVLAAVSID---GRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CCCEEEEEEecCCceEEEEEECC---CCceEECcCCCCCcCCCccCCC
Confidence            99988765543 33  6667765   5555666666667788889873

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.45  E-value=1.1e-11  Score=109.51  Aligned_cols=286  Identities=17%  Similarity=0.185  Sum_probs=178.2

Q ss_pred             CceEEEEEecCC-CcEEEEEeCCceEEEEEcCCCCCcc---------------eee----c---------ccccCCCCCC
Q 009203          224 RKLRSLSLNPVN-EQLFVTSALDGVIRLWQLQSRGSGA---------------SLL----S---------TTDCLSPKHR  274 (540)
Q Consensus       224 ~~V~~l~~spd~-~~~l~tg~~dg~v~iw~~~~~~~~~---------------~~~----~---------~~~~~~~~h~  274 (540)
                      ..|+.+.|.+++ ...++..+.|.+|++|.+.......               .+.    .         ........|.
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            578999998763 3466777889999999986543211               000    0         0011114688


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc----ccceeEEEEeCCCCCEEEEEecCCc
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV----KGIINSIIFLPWENPCFATGGSDHA  350 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~s~~~dg~  350 (540)
                      --|+++.++.|+..++++     .|=.|-+|++.-.  .........+|+.    ..-|++..|+|...+.|+..+..|+
T Consensus       165 yhiNSIS~NsD~Et~lSA-----DdLRINLWnlei~--d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt  237 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSA-----DDLRINLWNLEII--DQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT  237 (433)
T ss_pred             eEeeeeeecCccceEeec-----cceeeeecccccc--CCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence            889999999999999995     8899999999754  2445555554431    2358889999988899999999999


Q ss_pred             EEEEecCCCCCcccc-ceee----------cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeecc----
Q 009203          351 VVLWSERDAEDSWKP-KALH----------RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQI----  414 (540)
Q Consensus       351 i~iwd~~~~~~~~~~-~~~~----------~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~----  414 (540)
                      |++.|++.....-.. +.+.          ...--..|..+.|+++|+++++-+. -+|++||+.. .+++...+.    
T Consensus       238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l  316 (433)
T KOG1354|consen  238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL  316 (433)
T ss_pred             EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence            999999954321000 1110          0112356889999999999998665 4899999943 444333221    


Q ss_pred             --------C----ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203          415 --------E----SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI  482 (540)
Q Consensus       415 --------~----~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  482 (540)
                              +    -.-..++|+.++   .++++|+..+.+++|++..+......+....    ....+..+.   .-+.+
T Consensus       317 r~kLc~lYEnD~IfdKFec~~sg~~---~~v~TGsy~n~frvf~~~~gsk~d~tl~asr----~~~~~~~~~---k~~~V  386 (433)
T KOG1354|consen  317 RSKLCSLYENDAIFDKFECSWSGND---SYVMTGSYNNVFRVFNLARGSKEDFTLEASR----KNMKPRKVL---KLRLV  386 (433)
T ss_pred             HHHHHHHhhccchhheeEEEEcCCc---ceEecccccceEEEecCCCCcceeecccccc----cCCcccccc---cceee
Confidence                    1    123456777766   6999999999999999776554332221100    000111110   12344


Q ss_pred             EEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          483 TSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       483 ~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      .+++......+|--         .+. ....|...+|+|..+.+|.+..+. ++||
T Consensus       387 ~~~g~r~~~~~~vd---------~ld-f~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  387 SSSGKRKRDEISVD---------ALD-FRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             ecCCCccccccccc---------hhh-hhhHHHhhccCCccceeeeeecCc-eEEe
Confidence            44544433222111         111 123467789999999888887654 4444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.44  E-value=2.5e-11  Score=105.11  Aligned_cols=258  Identities=15%  Similarity=0.153  Sum_probs=169.9

Q ss_pred             cCceEEEEEec--CCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          223 KRKLRSLSLNP--VNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       223 ~~~V~~l~~sp--d~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      +..+..+.|..  ++|. .|+-+-.+|.|.++..........+..-. .. .-....-.++.|++.+..++++    ..+
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls-~~-ki~~~~~lslD~~~~~~~i~vs----~s~  142 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS-SK-KISVVEALSLDISTSGTKIFVS----DSR  142 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc-hh-hhhheeeeEEEeeccCceEEEE----cCC
Confidence            34566667752  3344 56667778999999876544332221110 00 0000113478899999999998    888


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC-CccccceeecccCCccee
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE-DSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~  378 (540)
                      |.+.+-+..... .+.++..+   .|.-+++-..|+..+.+++.+|+.|+.+..||++... .+|.-    ...|...|.
T Consensus       143 G~~~~v~~t~~~-le~vq~wk---~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----~kvH~~GV~  214 (339)
T KOG0280|consen  143 GSISGVYETEMV-LEKVQTWK---VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----SKVHTSGVV  214 (339)
T ss_pred             CcEEEEecceee-eeeccccc---ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec----ceeeecceE
Confidence            988855544321 11222333   4677899999998888999999999999999999433 22211    234889999


Q ss_pred             EEEecc-CCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          379 GVAGMQ-QKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       379 ~l~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      ++.-+| .+.+|++|+.|-.|++||.|+ +++++.-...+.+..+..+|....  .++.++.-+..+|-+..........
T Consensus       215 SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~--~lL~~CMh~G~ki~~~~~~~~e~~~  292 (339)
T KOG0280|consen  215 SIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFH--RLLAACMHNGAKILDSSDKVLEFQI  292 (339)
T ss_pred             EEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhh--HHHHHHHhcCceEEEecccccchhe
Confidence            999876 578999999999999999994 888888888899999999997642  2333444455677777654433111


Q ss_pred             eccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEE-EEeccC
Q 009203          457 FGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIH-LFDIRY  498 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~-iwd~~~  498 (540)
                      .  ....+.|.+-+..-.|.....+||+++ .|..++ +|-.-+
T Consensus       293 ~--~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  293 V--LPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             e--eeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            0  113456776666777755556788865 466644 665443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.43  E-value=7.9e-10  Score=106.33  Aligned_cols=281  Identities=14%  Similarity=0.176  Sum_probs=168.7

Q ss_pred             CceEEEEEecCCCcEEEEEeC----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          224 RKLRSLSLNPVNEQLFVTSAL----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      .....|+++|+ +++|.+...    +|.|..|.+.......+......    ........++++|++++|+++.   ..+
T Consensus        37 ~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~----~~g~~p~~i~~~~~g~~l~van---y~~  108 (345)
T PF10282_consen   37 ENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP----SGGSSPCHIAVDPDGRFLYVAN---YGG  108 (345)
T ss_dssp             SSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE----ESSSCEEEEEECTTSSEEEEEE---TTT
T ss_pred             CCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec----cCCCCcEEEEEecCCCEEEEEE---ccC
Confidence            45677889996 777777655    57999999887521122222111    1123356799999999998882   579


Q ss_pred             CeEEEEecCCCCC-ceeEEeecC-------CCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCcc-ccceee
Q 009203          300 SQISVLNLNKTKG-RACVTFLDD-------KPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSW-KPKALH  369 (540)
Q Consensus       300 ~~i~vwd~~~~~~-~~~~~~~~~-------~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~-~~~~~~  369 (540)
                      |.|.++++..... ......+..       .........++.|+| +++++++... ...|.+|++....... ....+ 
T Consensus       109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-  186 (345)
T PF10282_consen  109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI-  186 (345)
T ss_dssp             TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE-
T ss_pred             CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecc-
Confidence            9999999986411 122112210       011234578999999 8888777643 3579999998765211 11111 


Q ss_pred             cccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECC--CCCeee--e---e----ccCccEEEEeecCCCCCceEEEEEc
Q 009203          370 RNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAG--VGRADF--K---H----QIESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       370 ~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~--~~~~~~--~---~----~~~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      ..........++|+|+++++++... ++.|.+|++.  .+....  .   .    ........+.++|++.  .++++..
T Consensus       187 ~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~--~lyvsnr  264 (345)
T PF10282_consen  187 KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR--FLYVSNR  264 (345)
T ss_dssp             ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS--EEEEEEC
T ss_pred             ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC--EEEEEec
Confidence            1234566889999999998877655 7789999888  443311  1   1    1122577888999883  2445556


Q ss_pred             CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCccccccc-cccccee
Q 009203          438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQSIR-AHQKRVF  515 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~-~h~~~i~  515 (540)
                      ..+.|.+|++......+....   ...........++++|+|++|+++. .++.|.+|+++...+.+...-. .......
T Consensus       265 ~~~sI~vf~~d~~~g~l~~~~---~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~  341 (345)
T PF10282_consen  265 GSNSISVFDLDPATGTLTLVQ---TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPV  341 (345)
T ss_dssp             TTTEEEEEEECTTTTTEEEEE---EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred             cCCEEEEEEEecCCCceEEEE---EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence            678999999953321222221   1122233589999999999998776 5678999998753344332221 1233456


Q ss_pred             EEEE
Q 009203          516 KAVW  519 (540)
Q Consensus       516 ~l~~  519 (540)
                      ||.|
T Consensus       342 ci~f  345 (345)
T PF10282_consen  342 CIVF  345 (345)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            6655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.43  E-value=9e-12  Score=110.13  Aligned_cols=248  Identities=14%  Similarity=0.152  Sum_probs=178.2

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecC-CCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN-KTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH  349 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  349 (540)
                      .||.+.|++...-|...-+++.    +.|.+++||--. .++....+..     ....++.++.+.+ +...|+.|-..|
T Consensus        21 eG~~d~vn~~~l~~~e~gv~~~----s~drtvrv~lkrds~q~wpsI~~-----~mP~~~~~~~y~~-e~~~L~vg~~ng   90 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPKEEGVISV----SEDRTVRVWLKRDSGQYWPSIYH-----YMPSPCSAMEYVS-ESRRLYVGQDNG   90 (404)
T ss_pred             cCchhhhhhheeccCCCCeEEc----cccceeeeEEeccccccCchhhh-----hCCCCceEeeeec-cceEEEEEEecc
Confidence            5888889988888888889998    999999999543 3322111211     1246789999999 888999999999


Q ss_pred             cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCC
Q 009203          350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFN  429 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (540)
                      ++.-+.+...-..... .-....|...+..+-|+....++++.+.|..+.---.+.+..+-.+..........++-    
T Consensus        91 tvtefs~sedfnkm~~-~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~----  165 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTF-LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA----  165 (404)
T ss_pred             eEEEEEhhhhhhhcch-hhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee----
Confidence            9998876542210001 11124589999999999888999999999877655555555433322222222221111    


Q ss_pred             ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203          430 LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       430 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  509 (540)
                       .+...|...|.|.+-.+....+..     ...+.+|.+.+++++|.|....|++|..|..+.+||+... ......+.+
T Consensus       166 -~~~fvGd~~gqvt~lr~~~~~~~~-----i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~-~g~~~el~g  238 (404)
T KOG1409|consen  166 -LYAFVGDHSGQITMLKLEQNGCQL-----ITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR-KGTAYELQG  238 (404)
T ss_pred             -EEEEecccccceEEEEEeecCCce-----EEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC-cceeeeecc
Confidence             245556666766666554333222     2266899999999999999999999999999999999853 334556778


Q ss_pred             cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          510 HQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       510 h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |.+.|..+...+.-+.|++++.||.|.+|++
T Consensus       239 h~~kV~~l~~~~~t~~l~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  239 HNDKVQALSYAQHTRQLISCGEDGGIVVWNM  269 (404)
T ss_pred             chhhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence            9999999999888899999999999999985

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.42  E-value=5.9e-11  Score=119.60  Aligned_cols=138  Identities=19%  Similarity=0.238  Sum_probs=113.8

Q ss_pred             EEecCCCCeEEEeccc----hh-cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203          201 VRTSASPATIHCHTSN----HV-SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR  275 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~----~~-~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~  275 (540)
                      +++++.-+.+.+|...    .+ +.||.+.|..+.|+.| |+++++.|.|.++|+|++++.+...       +..-+|..
T Consensus       148 i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~d-g~~i~s~SdDRsiRlW~i~s~~~~~-------~~~fgHsa  219 (967)
T KOG0974|consen  148 IASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLD-GRYIASVSDDRSIRLWPIDSREVLG-------CTGFGHSA  219 (967)
T ss_pred             EEeccccccEEEEeccccCCcceecccCCceEEEEEccC-CcEEEEEecCcceeeeecccccccC-------cccccccc
Confidence            5566667778888554    34 8999999999999995 9999999999999999999987554       22259999


Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      .|+.++|.|+  .|+++    +.|.+.++|+.+.    ..+..+.+  |....++.++..+ +...++|++.|+.+++||
T Consensus       220 Rvw~~~~~~n--~i~t~----gedctcrvW~~~~----~~l~~y~~--h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  220 RVWACCFLPN--RIITV----GEDCTCRVWGVNG----TQLEVYDE--HSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             eeEEEEeccc--eeEEe----ccceEEEEEeccc----ceehhhhh--hhhcceeEEEEcC-CceEEEeeccCcchhhhh
Confidence            9999999998  89999    9999999997773    23334444  3456699999998 888999999999999999


Q ss_pred             cCCC
Q 009203          356 ERDA  359 (540)
Q Consensus       356 ~~~~  359 (540)
                      +...
T Consensus       287 l~~r  290 (967)
T KOG0974|consen  287 LNGR  290 (967)
T ss_pred             hhcc
Confidence            8754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.41  E-value=3.8e-10  Score=122.34  Aligned_cols=269  Identities=13%  Similarity=0.157  Sum_probs=164.2

Q ss_pred             EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccc-cC-----CCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD-CL-----SPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~-~~-----~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      ..++++++++.++++-+.++.|++||... .....+..... ..     ...+......+++.++++.|+++   +..++
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa---Dt~n~  646 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA---DTENH  646 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE---eCCCc
Confidence            46888876677888888899999999864 32222211000 00     01123446889999998876665   25678


Q ss_pred             eEEEEecCCCCCceeEEeecCCCC--------------cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPH--------------VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK  366 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (540)
                      .|+++|+.++    .+..+.+.+.              .-....+++|+|.++.++++.+.++.|++||..++..    .
T Consensus       647 ~Ir~id~~~~----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v----~  718 (1057)
T PLN02919        647 ALREIDFVNE----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT----R  718 (1057)
T ss_pred             eEEEEecCCC----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE----E
Confidence            8999998764    1333221100              0123568999995666777778889999999987642    1


Q ss_pred             eeecc-------------cCCcceeEEEeccCCCE-EEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceE
Q 009203          367 ALHRN-------------LHSSAVMGVAGMQQKQI-VLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       367 ~~~~~-------------~~~~~v~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (540)
                      .+...             ........++++|+|+. +++.+.++.|++||+.++.......         -.+..     
T Consensus       719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g---------g~~~~-----  784 (1057)
T PLN02919        719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG---------GDPTF-----  784 (1057)
T ss_pred             EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe---------ccccc-----
Confidence            11100             01234567899999884 4455567899999988664311000         00000     


Q ss_pred             EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc----
Q 009203          433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR----  508 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~----  508 (540)
                           .+....+++......           ...-....+++++++|.++++-..++.|++||..+  +... ++.    
T Consensus       785 -----~~~l~~fG~~dG~g~-----------~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t--g~v~-tiaG~G~  845 (1057)
T PLN02919        785 -----SDNLFKFGDHDGVGS-----------EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT--KRVT-TLAGTGK  845 (1057)
T ss_pred             -----CcccccccCCCCchh-----------hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC--CeEE-EEeccCC
Confidence                 000001111100000           00112346889999999989989999999999985  2222 111    


Q ss_pred             ----------ccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          509 ----------AHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       509 ----------~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                                +.-.....|+++++|+++++.+.++.|++||+
T Consensus       846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence                      12235788999999999999999999999985

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=3e-10  Score=106.78  Aligned_cols=294  Identities=13%  Similarity=0.160  Sum_probs=181.6

Q ss_pred             eEEEeccc---hhcc-cccCceEEEEEecCCCcEEEEEeCC-----------ceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          209 TIHCHTSN---HVSS-LHKRKLRSLSLNPVNEQLFVTSALD-----------GVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       209 ~i~~~~~~---~~~~-~h~~~V~~l~~spd~~~~l~tg~~d-----------g~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      -|.+|-|.   ++-+ .| -.|.-+.||| +.++|+|-+..           ..+.|||+.+|.....+.....     .
T Consensus       232 GI~lWGG~~f~r~~RF~H-p~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~-----~  304 (698)
T KOG2314|consen  232 GIALWGGESFDRIQRFYH-PGVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS-----P  304 (698)
T ss_pred             ceeeecCccHHHHHhccC-CCceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC-----C
Confidence            45667555   2222 33 4589999999 69999996532           4689999999987776654211     1


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-----  348 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----  348 (540)
                      ...-.-..||.|++++|--    . ...|.||+..+      +..+..+.-.-..|....|+| .+++||.=+..     
T Consensus       305 ~~~WP~frWS~DdKy~Arm----~-~~sisIyEtps------f~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~p  372 (698)
T KOG2314|consen  305 YLKWPIFRWSHDDKYFARM----T-GNSISIYETPS------FMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIP  372 (698)
T ss_pred             ccccceEEeccCCceeEEe----c-cceEEEEecCc------eeeecccccCCccccCcccCC-CcceEEEEcccccCCc
Confidence            1111247899999999986    3 36799998764      333443333334588999999 77777653321     


Q ss_pred             CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe----------CCCeEEEEECCCCCe-eeeeccCcc
Q 009203          349 HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG----------ADKRIIGFDAGVGRA-DFKHQIESK  417 (540)
Q Consensus       349 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~-~~~~~~~~~  417 (540)
                      ..+.+..+.+++.+...     ..+.-.=..+.|-.+|.+|+.--          .-..+-|+.++.... +........
T Consensus       373 arvtL~evPs~~~iRt~-----nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~  447 (698)
T KOG2314|consen  373 ARVTLMEVPSKREIRTK-----NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES  447 (698)
T ss_pred             ceEEEEecCccceeeec-----cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence            23555555554431111     11222223466777788776521          112356666665433 445667788


Q ss_pred             EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE---eCCCcEEEE
Q 009203          418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG---SADPVIHLF  494 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg---~~dg~i~iw  494 (540)
                      +..++|.|.+.....|..-....++.+|.+.+......   +...+..  ...+.+.|+|.|++++.+   |..|.+.++
T Consensus       448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~---lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~  522 (698)
T KOG2314|consen  448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS---LVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFY  522 (698)
T ss_pred             eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh---hhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEE
Confidence            99999999885422222223456799998884221111   1112221  346789999999998866   457899999


Q ss_pred             eccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203          495 DIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       495 d~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      |+...+.+.+ ....|. ..+.+.|.|.|+|+++++.-.
T Consensus       523 D~~~a~~k~~-~~~eh~-~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  523 DTDYADLKDT-ASPEHF-AATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             ecchhhhhhc-cCcccc-ccccceECCCCCEEEEeeehh
Confidence            9985212222 222344 468899999999999997543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.40  E-value=2.2e-11  Score=122.62  Aligned_cols=274  Identities=12%  Similarity=0.103  Sum_probs=185.1

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      -+++++.++-.   .+|+.|. -..|.+||+..+..+..+....-.  ..|...=.-.   -.+.+++.+    ..-+.+
T Consensus         7 ~~~l~~~~~~~---~~llag~-gp~i~~yd~~s~~li~~~~~~~~~--~~H~~e~~~~---l~~~~~v~~----~~~~~v   73 (967)
T KOG0974|consen    7 LGPLNLPQLVS---DYLLAGS-GPEILVYDLSSGCLIRHLIQSKIL--EVHRGEGKVK---LLSGKIVTC----AKSDEV   73 (967)
T ss_pred             cccccchhhcc---ceeeecC-CCceEEeeCCchhHhhhhhhhccc--ccccccccce---eccceEEEE----Eeecce
Confidence            34566666653   3555554 346999999988776655432211  2330000000   112344444    222222


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce-----
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV-----  377 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-----  377 (540)
                      ..=+...    .....+      .+.+....+.- +...++.+..+..+.+||...+....+.+      +...+     
T Consensus        74 ~~~~~~~----~~~~~~------s~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~------~~er~~l~~~  136 (967)
T KOG0974|consen   74 YVKEASN----QIIERF------SDWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQ------SDERCTLYSS  136 (967)
T ss_pred             eecchhh----hhhhhc------cccccccchhh-hcceEEEEEcCceEEEEecccCceehhcC------CCceEEEEeE
Confidence            2222111    011111      23344444444 67788888889999999998775422111      22211     


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      .-+.++++.-++++|+.-+.|.+|+... ..+.....+++.+.++.++-++   .++++.++|.++++|++.+.+...  
T Consensus       137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg---~~i~s~SdDRsiRlW~i~s~~~~~--  211 (967)
T KOG0974|consen  137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG---RYIASVSDDRSIRLWPIDSREVLG--  211 (967)
T ss_pred             EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCC---cEEEEEecCcceeeeecccccccC--
Confidence            2223466677899999999999999874 2334456778899999998887   799999999999999999887544  


Q ss_pred             eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc-ceeEEEEcCCCCEEEEEEcCCcE
Q 009203          457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK-RVFKAVWHYSHPLLISISSDLNI  535 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~i~~l~~s~~~~~l~s~~~dg~v  535 (540)
                          ...-+|...|+.+.|+|+  .+++++.|-+.++|+.+   +..+..+.+|.+ .|+.++..++...++|++.||.+
T Consensus       212 ----~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~---~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~l  282 (967)
T KOG0974|consen  212 ----CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN---GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTL  282 (967)
T ss_pred             ----cccccccceeEEEEeccc--eeEEeccceEEEEEecc---cceehhhhhhhhcceeEEEEcCCceEEEeeccCcch
Confidence                133479999999999998  99999999999999877   566778888864 79999999999999999999999


Q ss_pred             EEEeC
Q 009203          536 GLHKI  540 (540)
Q Consensus       536 ~iw~l  540 (540)
                      ++|++
T Consensus       283 k~~~l  287 (967)
T KOG0974|consen  283 KLWDL  287 (967)
T ss_pred             hhhhh
Confidence            99985

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.39  E-value=2.6e-10  Score=106.28  Aligned_cols=281  Identities=14%  Similarity=0.087  Sum_probs=184.2

Q ss_pred             CceEEEEEecCCCcEEEEEeCCc---------------eEEEEEcCCCCCcceeecccccCCCCCCCCce-eEEEecCCC
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDG---------------VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE-DIAWHPQGN  287 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg---------------~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~~~~~  287 (540)
                      ..|.-+.|+| ++.+|.+-+..+               .+.+||+.++..+..+.....      ..-.+ -+.|+-+.+
T Consensus        72 ~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q------~~~~Wp~~k~s~~D~  144 (561)
T COG5354          72 PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ------PYLGWPVLKFSIDDK  144 (561)
T ss_pred             CCceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCC------cccccceeeeeecch
Confidence            5699999999 599999976443               499999999887666643221      11123 578888888


Q ss_pred             eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-CCCEEEE-----EecCCcEEEEecCCCCC
Q 009203          288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-ENPCFAT-----GGSDHAVVLWSERDAED  361 (540)
Q Consensus       288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s-----~~~dg~i~iwd~~~~~~  361 (540)
                      ++|-.     ....+.|+++...-.......+.     ...|....|+|. ++..|+.     .+.++.+++|.+..+..
T Consensus       145 y~ARv-----v~~sl~i~e~t~n~~~~p~~~lr-----~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~  214 (561)
T COG5354         145 YVARV-----VGSSLYIHEITDNIEEHPFKNLR-----PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV  214 (561)
T ss_pred             hhhhh-----ccCeEEEEecCCccccCchhhcc-----ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence            77664     45679999973221111222222     234888899984 3333443     35678899999986553


Q ss_pred             ccccceeecccCCcceeEEEeccCCCEEEEEe-----------CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203          362 SWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-----------ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       362 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (540)
                      +... .+    ....-..+.|.+.|+++++-.           ....++++++....+.......+.+..++|.|.+.. 
T Consensus       215 l~tk-~l----fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~-  288 (561)
T COG5354         215 LVTK-NL----FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSR-  288 (561)
T ss_pred             eeee-ee----EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCc-
Confidence            1111 11    122234678888888776521           124688888885444333366789999999997743 


Q ss_pred             eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeccCCCCcccccc
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---PVIHLFDIRYSANKPSQSI  507 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~  507 (540)
                      .-+++|..+-.+.++|++..  ....+        -...=..+.|||.+++++.++-|   |.|-+||.... ..++..+
T Consensus       289 F~vi~g~~pa~~s~~~lr~N--l~~~~--------Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r-f~~~~~~  357 (561)
T COG5354         289 FAVISGYMPASVSVFDLRGN--LRFYF--------PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR-FKVAGAF  357 (561)
T ss_pred             eeEEecccccceeecccccc--eEEec--------CCcccccccccCcccEEEEecCCccccceEEeccCCc-eEEEEEe
Confidence            45667788899999999865  22211        12334567899999999987765   78999999852 3333344


Q ss_pred             cccccceeEEEEcCCCCEEEEEE------cCCcEEEEeC
Q 009203          508 RAHQKRVFKAVWHYSHPLLISIS------SDLNIGLHKI  540 (540)
Q Consensus       508 ~~h~~~i~~l~~s~~~~~l~s~~------~dg~v~iw~l  540 (540)
                      .+..  -.-+.|+|||+++.+..      .|..|.||++
T Consensus       358 ~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         358 NGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             ecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence            4332  45568999999877653      5778999986

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.39  E-value=4.4e-12  Score=122.63  Aligned_cols=288  Identities=18%  Similarity=0.236  Sum_probs=189.0

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC---eEEEEeecCCCCC
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN---SLFSAHTADSGDS  300 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~---~l~s~~~~~~~d~  300 (540)
                      +++.++..+| .|+-+|.++.-| +.+-|+...-.......+...      -.|-.+.|+|...   .+++     ....
T Consensus        25 ~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tp------w~vad~qws~h~a~~~wiVs-----ts~q   91 (1081)
T KOG0309|consen   25 GGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITP------WQVADVQWSPHPAKPYWIVS-----TSNQ   91 (1081)
T ss_pred             Ccccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeeeccCc------chhcceecccCCCCceeEEe-----cCcc
Confidence            6789999999 588888888776 566677665444444333221      2256678877533   4454     4566


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                      .-.+|++.........-.+.+   |...|+.+.|+|+....+++++.|-.+..||++....    ..............+
T Consensus        92 kaiiwnlA~ss~~aIef~lhg---hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~----p~ys~~~w~s~asqV  164 (1081)
T KOG0309|consen   92 KAIIWNLAKSSSNAIEFVLHG---HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR----PFYSTSSWRSAASQV  164 (1081)
T ss_pred             hhhhhhhhcCCccceEEEEec---CccceeccccCCCCCcceeeccccccceeeeccCCCc----ceeeeecccccCcee
Confidence            677899876544333333443   6677999999999999999999999999999998763    222223344556788


Q ss_pred             EeccCCCEEEEEeCCCeEEEEECCCCCeee-eec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203          381 AGMQQKQIVLSAGADKRIIGFDAGVGRADF-KHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG  458 (540)
Q Consensus       381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  458 (540)
                      +|+-....+++.+....|++||++.|.... ... .-..+..+.|+..-.  ..+.+.+.|++|++||.........   
T Consensus       165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--s~~~s~~~d~tvkfw~y~kSt~e~~---  239 (1081)
T KOG0309|consen  165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--SEIMSSSNDGTVKFWDYSKSTTESK---  239 (1081)
T ss_pred             eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh--hhhcccCCCCceeeecccccccccc---
Confidence            998765556666677789999999876533 222 223344555554322  3678899999999999975443221   


Q ss_pred             cccccCccccCeEEEEEcCCCC--EEEEEeCCCcEEEE---------eccCCCCcccccccccccceeEEEEcC------
Q 009203          459 WKQESSESQSALINQSWSPDGL--YITSGSADPVIHLF---------DIRYSANKPSQSIRAHQKRVFKAVWHY------  521 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~--~l~sg~~dg~i~iw---------d~~~~~~~~~~~~~~h~~~i~~l~~s~------  521 (540)
                         .......+|+.-.|-|-|.  ++.---.+..+.++         +..+. .+++.+|.||.+.|....|-.      
T Consensus       240 ---~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~-~~pVh~F~GH~D~V~eFlWR~r~e~~~  315 (1081)
T KOG0309|consen  240 ---RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL-NTPVHTFVGHDDVVLEFLWRKRKECDG  315 (1081)
T ss_pred             ---eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC-CcceeeecCcchHHHHHhhhhcccccC
Confidence               1112344666667777443  22211122244444         33333 568999999999998877743      


Q ss_pred             --CC--CEEEEEEcCCcEEEEeC
Q 009203          522 --SH--PLLISISSDLNIGLHKI  540 (540)
Q Consensus       522 --~~--~~l~s~~~dg~v~iw~l  540 (540)
                        |.  -.|+|-+.|..+++|.|
T Consensus       316 d~d~rdfQLVTWSkD~~lrlWpI  338 (1081)
T KOG0309|consen  316 DYDSRDFQLVTWSKDQTLRLWPI  338 (1081)
T ss_pred             CCCccceeEEEeecCCceEeeec
Confidence              22  26999999999999975

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=2.1e-12  Score=120.88  Aligned_cols=293  Identities=15%  Similarity=0.160  Sum_probs=185.7

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC-cceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS-GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      +.||+..|..++--. +.+-+++++.|.+|++|.+..... ..+-...  .....|+.+|.++.|-.+-++++++     
T Consensus       731 f~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQ--fTY~aHkk~i~~igfL~~lr~i~Sc-----  802 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQ--FTYQAHKKPIHDIGFLADLRSIASC-----  802 (1034)
T ss_pred             ccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceee--eEhhhccCcccceeeeeccceeeec-----
Confidence            689999999988664 577899999999999999865332 1111111  1115899999999999998888886     


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-CCCEEEE-EecCCcEEEEecCCCCCccccceeecccCCc
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-ENPCFAT-GGSDHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                       ||.|.+||.--+.   .+..+...+.+ +.+..+...+. +..+++. ++...+|+++|.+..+.....+.....+...
T Consensus       803 -D~giHlWDPFigr---~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna  877 (1034)
T KOG4190|consen  803 -DGGIHLWDPFIGR---LLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNA  877 (1034)
T ss_pred             -cCcceeecccccc---hhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCch
Confidence             8999999987652   23222222222 22334443342 3334444 4778999999999987655555554455667


Q ss_pred             ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEE-EECCCCcce
Q 009203          376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRL-YDIRLRQTE  453 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i-~d~~~~~~~  453 (540)
                      .+.+++..+.|+.++.+-.+|+|.+.|.++|+.+..... +-....++ .|.+   +.++....|.++.+ |-.-++...
T Consensus       878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsd---q~L~~saldHslaVnWhaldgimh  953 (1034)
T KOG4190|consen  878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSD---QALAQSALDHSLAVNWHALDGIMH  953 (1034)
T ss_pred             heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-Cchh---HHHHhhcccceeEeeehhcCCeee
Confidence            899999999999999999999999999999987654322 22222222 2333   46777777788877 766544322


Q ss_pred             eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC--CCccccccc--ccccceeEEEEcCCCCEEEEE
Q 009203          454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS--ANKPSQSIR--AHQKRVFKAVWHYSHPLLISI  529 (540)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~--~h~~~i~~l~~s~~~~~l~s~  529 (540)
                      ....       .-..+..-  .-.-|.-|+++.....+.+|.-...  ....+..++  ...+..++++--|-..-+..|
T Consensus       954 ~q~k-------pppepahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaG 1024 (1034)
T KOG4190|consen  954 LQDK-------PPPEPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAG 1024 (1034)
T ss_pred             eccC-------CCCcchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhcc
Confidence            2110       00001000  1113556777766666777743210  001111221  234567888888877777888


Q ss_pred             EcCCcEEE
Q 009203          530 SSDLNIGL  537 (540)
Q Consensus       530 ~~dg~v~i  537 (540)
                      ...|.|.+
T Consensus      1025 ne~G~IaL 1032 (1034)
T KOG4190|consen 1025 NEHGAIAL 1032 (1034)
T ss_pred             CCCCceee
Confidence            88888875

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.36  E-value=2.5e-10  Score=113.73  Aligned_cols=206  Identities=11%  Similarity=0.024  Sum_probs=132.6

Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC---CcEEEEecCCCCCccccceeecccCCc
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD---HAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                      ...|.++|.....   ......    +...+...+|+| ++++|+.+..+   ..|++||+.++..    ..+.  .+.+
T Consensus       169 ~~~l~~~d~~g~~---~~~l~~----~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~----~~~~--~~~~  234 (417)
T TIGR02800       169 RYELQVADYDGAN---PQTITR----SREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQR----EKVA--SFPG  234 (417)
T ss_pred             cceEEEEcCCCCC---CEEeec----CCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCE----EEee--cCCC
Confidence            4468888876432   122222    234588899999 99998887654   4799999988753    2222  2445


Q ss_pred             ceeEEEeccCCCEEEEE-eCCC--eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc-CCC--eEEEEECCC
Q 009203          376 AVMGVAGMQQKQIVLSA-GADK--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT-PGR--QLRLYDIRL  449 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~v~i~d~~~  449 (540)
                      .+.+++|+|||+.|+.. +.++  .|++||+.++................|+|++   ..|+..+ .++  .|+++|+.+
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg---~~l~~~s~~~g~~~iy~~d~~~  311 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDG---KSIAFTSDRGGSPQIYMMDADG  311 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCC---CEEEEEECCCCCceEEEEECCC
Confidence            56778999999877654 4444  5999999877654333333333456788876   4554443 333  578888876


Q ss_pred             CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC---cEEEEeccCCCCcccccccccccceeEEEEcCCCCEE
Q 009203          450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP---VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL  526 (540)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l  526 (540)
                      +.....        ..+...+..+.|+|+|++|+.++.++   .|.+||+.+.  . ...+... .......|+|||++|
T Consensus       312 ~~~~~l--------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~--~-~~~l~~~-~~~~~p~~spdg~~l  379 (417)
T TIGR02800       312 GEVRRL--------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG--G-ERVLTDT-GLDESPSFAPNGRMI  379 (417)
T ss_pred             CCEEEe--------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC--C-eEEccCC-CCCCCceECCCCCEE
Confidence            543211        12334567789999999999887765   7888888762  2 2222222 224556899999988


Q ss_pred             EEEEcCC
Q 009203          527 ISISSDL  533 (540)
Q Consensus       527 ~s~~~dg  533 (540)
                      +.++.++
T Consensus       380 ~~~~~~~  386 (417)
T TIGR02800       380 LYATTRG  386 (417)
T ss_pred             EEEEeCC
Confidence            8777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.35  E-value=1.7e-08  Score=90.90  Aligned_cols=285  Identities=10%  Similarity=0.097  Sum_probs=183.3

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeC---CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSAL---DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      +-.+.+..+-|+|+|+ +++|.++..   +|.|.-|.++...-..++......  .+  .+.+.++++++|++++++.  
T Consensus        35 ~v~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~--~g--~~p~yvsvd~~g~~vf~An--  107 (346)
T COG2706          35 LVAELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL--PG--SPPCYVSVDEDGRFVFVAN--  107 (346)
T ss_pred             hccccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc--CC--CCCeEEEECCCCCEEEEEE--
Confidence            3467788999999995 877877754   577888888754222333322211  12  2337899999999999983  


Q ss_pred             CCCCCeEEEEecCCC-CCceeEEeecCCC--Cc----ccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccce
Q 009203          296 DSGDSQISVLNLNKT-KGRACVTFLDDKP--HV----KGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKA  367 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~-~~~~~~~~~~~~~--~~----~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~  367 (540)
                       -..|.|.++-++.. .-...+..+...+  .|    ...+....|.| ++++|++... --.|.+|++..+........
T Consensus       108 -Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~  185 (346)
T COG2706         108 -YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPA  185 (346)
T ss_pred             -ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCcccccccc
Confidence             56789999988653 2222222222100  01    12278899999 9999888753 23599999997764222222


Q ss_pred             eecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCC--Ce--eee-------eccCccEEEEeecCCCCCceEEEE
Q 009203          368 LHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVG--RA--DFK-------HQIESKCMSVLPNPCDFNLFMVQT  435 (540)
Q Consensus       368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~--~~--~~~-------~~~~~~~~~~~~~~~~~~~~~l~~  435 (540)
                      ..  ........|.|+|++++.++.++ +++|-+|.....  +.  +..       +.......++..++++   ++|.+
T Consensus       186 ~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG---rFLYa  260 (346)
T COG2706         186 EV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG---RFLYA  260 (346)
T ss_pred             cc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC---CEEEE
Confidence            21  24566789999999999888776 889999998863  22  111       3335667788889988   56665


Q ss_pred             Ec-CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-CcEEEEeccCCCCccccccc-cccc
Q 009203          436 GT-PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-PVIHLFDIRYSANKPSQSIR-AHQK  512 (540)
Q Consensus       436 ~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-g~i~iwd~~~~~~~~~~~~~-~h~~  512 (540)
                      +. ....|.+|.+......+...+   ....+......+.|++.|++|+++..+ ..|.+|.++...+++..... ....
T Consensus       261 sNRg~dsI~~f~V~~~~g~L~~~~---~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p  337 (346)
T COG2706         261 SNRGHDSIAVFSVDPDGGKLELVG---ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVP  337 (346)
T ss_pred             ecCCCCeEEEEEEcCCCCEEEEEE---EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCC
Confidence            53 335788888876544333332   222344457889999999999988764 56999998865454333222 2333


Q ss_pred             ceeEEEEc
Q 009203          513 RVFKAVWH  520 (540)
Q Consensus       513 ~i~~l~~s  520 (540)
                      ...||.|.
T Consensus       338 ~Pvcv~f~  345 (346)
T COG2706         338 EPVCVKFL  345 (346)
T ss_pred             CcEEEEEc
Confidence            45666663

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.1e-09  Score=103.47  Aligned_cols=279  Identities=13%  Similarity=0.183  Sum_probs=184.0

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee-----cC-
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT-----AD-  296 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-----~~-  296 (540)
                      ..+++..++++ +|+++|.+. +..|+|++......+.+...          ..+.++.|+|.|.+|.+--.     ++ 
T Consensus        34 ~~~~~v~~~S~-~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~----------~~~~~L~fSP~g~yL~T~e~~~i~~~~~  101 (566)
T KOG2315|consen   34 SRPCNVFAYSN-NGRLFAYSD-NQVVKVFEIATLKVVLCVEL----------KKTYDLLFSPKGNYLLTWEPWAIYGPKN  101 (566)
T ss_pred             CCcceeEEEcC-CCcEEEEEc-CCeEEEEEccCCcEEEEecc----------ceeeeeeecccccccccccccccccCCC
Confidence            34577888998 588877765 56899999988763332211          14789999999998887400     00 


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      .....+.+|++.++.   ....+...  ... -++..|++ |..+.+- -..+.+++|++....      .....-|...
T Consensus       102 ~~~pn~~v~~vet~~---~~s~~q~k--~Q~-~W~~qfs~-dEsl~ar-lv~nev~f~~~~~f~------~~~~kl~~~~  167 (566)
T KOG2315|consen  102 ASNPNVLVYNVETGV---QRSQIQKK--MQN-GWVPQFSI-DESLAAR-LVSNEVQFYDLGSFK------TIQHKLSVSG  167 (566)
T ss_pred             CCCCceeeeeeccce---ehhheehh--hhc-Cccccccc-chhhhhh-hhcceEEEEecCCcc------ceeeeeeccc
Confidence            123568899999852   22222221  122 26889998 5544332 234679999998743      2333347888


Q ss_pred             eeEEEeccCC--CEEEE-----EeCCCeEEEEECCCCCeee----eeccCccEEEEeecCCCCCceEEEEEcCCC-----
Q 009203          377 VMGVAGMQQK--QIVLS-----AGADKRIIGFDAGVGRADF----KHQIESKCMSVLPNPCDFNLFMVQTGTPGR-----  440 (540)
Q Consensus       377 v~~l~~s~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----  440 (540)
                      |+.+.++|.+  ..+++     .+.-+.|+||.........    ..-....-..+.|++-+....+|++..-|.     
T Consensus       168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SY  247 (566)
T KOG2315|consen  168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASY  247 (566)
T ss_pred             eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccc
Confidence            9999999863  33333     3445679999886322211    122234556788888776655555554443     


Q ss_pred             ----eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE--EeCCCcEEEEeccCCCCcccccccccccce
Q 009203          441 ----QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS--GSADPVIHLFDIRYSANKPSQSIRAHQKRV  514 (540)
Q Consensus       441 ----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~h~~~i  514 (540)
                          +++++++....+.+..        ...++|.++.|+|+|+-+++  |-.--.+.|||++   +.++..+.  .++=
T Consensus       248 YGEq~Lyll~t~g~s~~V~L--------~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr---~~~v~df~--egpR  314 (566)
T KOG2315|consen  248 YGEQTLYLLATQGESVSVPL--------LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR---GKPVFDFP--EGPR  314 (566)
T ss_pred             cccceEEEEEecCceEEEec--------CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC---CCEeEeCC--CCCc
Confidence                5777777733332221        23679999999999987654  5567889999999   67776664  5677


Q ss_pred             eEEEEcCCCCEEEEEEcC---CcEEEEeC
Q 009203          515 FKAVWHYSHPLLISISSD---LNIGLHKI  540 (540)
Q Consensus       515 ~~l~~s~~~~~l~s~~~d---g~v~iw~l  540 (540)
                      +++.|+|.|++|+.+|-+   |.|-|||+
T Consensus       315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  315 NTAFFNPHGNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             cceEECCCCCEEEEeecCCCCCceEEEec
Confidence            899999999998888754   88999995

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=1.1e-11  Score=130.90  Aligned_cols=207  Identities=16%  Similarity=0.221  Sum_probs=158.4

Q ss_pred             CCeEEEeccc---hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe
Q 009203          207 PATIHCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH  283 (540)
Q Consensus       207 d~~i~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~  283 (540)
                      +.+..-|++.   ..++.|-..|.++.=+| ...+.+||+.||.|++|....++.+..+..      .|. ..|+.+.|+
T Consensus      2189 ~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt------~g~-s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGASVMIKHPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRT------AGN-SRVTRSRFN 2260 (2439)
T ss_pred             CccccceecccceeEeecccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeec------cCc-chhhhhhhc
Confidence            3344445443   44677778899999999 488999999999999999988876655543      233 789999999


Q ss_pred             cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe---cCCcEEEEecCCCC
Q 009203          284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG---SDHAVVLWSERDAE  360 (540)
Q Consensus       284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~  360 (540)
                      ..|+.+..+    ..||.+.+|....    +.+...+.   |......+.|-.   ..+++++   .++.+.+||.--..
T Consensus      2261 ~qGnk~~i~----d~dg~l~l~q~~p----k~~~s~qc---hnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2261 HQGNKFGIV----DGDGDLSLWQASP----KPYTSWQC---HNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred             ccCCceeee----ccCCceeecccCC----cceecccc---CCccccceeeee---hhhhccccCCCCCcccchhcccCc
Confidence            999999998    9999999999882    23333332   455577778853   5677664   46889999987655


Q ss_pred             CccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC
Q 009203          361 DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR  440 (540)
Q Consensus       361 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  440 (540)
                      ..+-+.    ..|.+.++++++-|..++|++|+.+|.|++||++..+.+..++.        ++..    .++++|+..|
T Consensus      2327 ~~s~v~----~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~~~----~~f~~~ss~g 2390 (2439)
T KOG1064|consen 2327 MNSLVH----TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LDTR----EYFVTGSSEG 2390 (2439)
T ss_pred             ccceee----eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hhhh----heeeccCccc
Confidence            322222    56999999999999999999999999999999998776555443        2211    4899999999


Q ss_pred             eEEEEECCCCc
Q 009203          441 QLRLYDIRLRQ  451 (540)
Q Consensus       441 ~v~i~d~~~~~  451 (540)
                      .++||++....
T Consensus      2391 ~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2391 NIKIWRLSEFG 2401 (2439)
T ss_pred             ceEEEEccccc
Confidence            99999998764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.5e-09  Score=108.31  Aligned_cols=223  Identities=13%  Similarity=0.111  Sum_probs=133.5

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCC---ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALD---GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT  294 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~  294 (540)
                      .+..|...+...+|+|| |+.|+..+.+   ..|.+|++.+++.. .+ .       ...+.+...+|+|||+.|+....
T Consensus       193 ~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~~-~l-~-------~~~g~~~~~~~SpDG~~la~~~~  262 (430)
T PRK00178        193 TLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRRE-QI-T-------NFEGLNGAPAWSPDGSKLAFVLS  262 (430)
T ss_pred             EEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCEE-Ec-c-------CCCCCcCCeEECCCCCEEEEEEc
Confidence            35567788999999997 7777665533   36888999876532 11 1       11223457899999998875421


Q ss_pred             cCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CC--cEEEEecCCCCCccccceeecc
Q 009203          295 ADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DH--AVVLWSERDAEDSWKPKALHRN  371 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~  371 (540)
                      . ..+..|.+||+.++..    ..+..   +........|+| +++.|+..+. +|  .|+++|+.+++.    ..+...
T Consensus       263 ~-~g~~~Iy~~d~~~~~~----~~lt~---~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~----~~lt~~  329 (430)
T PRK00178        263 K-DGNPEIYVMDLASRQL----SRVTN---HPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRA----ERVTFV  329 (430)
T ss_pred             c-CCCceEEEEECCCCCe----EEccc---CCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCE----EEeecC
Confidence            1 2234688889987532    22222   233456788999 8887766553 33  577778877652    223221


Q ss_pred             cCCcceeEEEeccCCCEEEEEeCC-C--eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc-CCC--eEEEE
Q 009203          372 LHSSAVMGVAGMQQKQIVLSAGAD-K--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT-PGR--QLRLY  445 (540)
Q Consensus       372 ~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~v~i~  445 (540)
                        ........|+|+|+.|+..+.+ +  .|.+||+.++....... ........|+|++   .+++..+ .++  .+.++
T Consensus       330 --~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~~~~~p~~spdg---~~i~~~~~~~g~~~l~~~  403 (430)
T PRK00178        330 --GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-TSLDESPSVAPNG---TMLIYATRQQGRGVLMLV  403 (430)
T ss_pred             --CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-CCCCCCceECCCC---CEEEEEEecCCceEEEEE
Confidence              2233457899999999887653 2  58899998876533322 1222345788877   3444433 333  46666


Q ss_pred             ECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203          446 DIRLRQTEIHAFGWKQESSESQSALINQSWSP  477 (540)
Q Consensus       446 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  477 (540)
                      ++.....  .      .+..+.+.+...+|+|
T Consensus       404 ~~~g~~~--~------~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        404 SINGRVR--L------PLPTAQGEVREPSWSP  427 (430)
T ss_pred             ECCCCce--E------ECcCCCCCcCCCccCC
Confidence            7653322  1      1122334456667776

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.30  E-value=6.5e-10  Score=105.69  Aligned_cols=193  Identities=18%  Similarity=0.215  Sum_probs=147.3

Q ss_pred             cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe------C-------------CCCCEEEE
Q 009203          284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL------P-------------WENPCFAT  344 (540)
Q Consensus       284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------p-------------~~~~~l~s  344 (540)
                      |...++|..    ..||.+++||...++.   .+.+....+..+...+..|.      |             .+...++-
T Consensus         3 ~~~~~~A~~----~~~g~l~iw~t~~~~~---~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl   75 (541)
T KOG4547|consen    3 PALDYFALS----TGDGRLRIWDTAKNQL---QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL   75 (541)
T ss_pred             chhheEeec----CCCCeEEEEEccCcee---eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence            445688888    9999999999988732   33333222334455555552      1             14456888


Q ss_pred             EecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEee
Q 009203          345 GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLP  423 (540)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~  423 (540)
                      |...|.|.+|++..++..   ..+....|.+.|.++.++.+-..|.+++.|+.+..|+...+..+..... ...+.+++.
T Consensus        76 gt~~g~v~~ys~~~g~it---~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i  152 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEIT---AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI  152 (541)
T ss_pred             ecCCccEEEEEecCCeEE---EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence            889999999999999863   3344467999999999999999999999999999999998888776554 456778899


Q ss_pred             cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC-----CCEEEEE-eCCCcEEEEecc
Q 009203          424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-----GLYITSG-SADPVIHLFDIR  497 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----g~~l~sg-~~dg~i~iwd~~  497 (540)
                      +|++   ..+++++  +.|++||+.+.+...       .+.+|.++|.+++|-.+     |.++.++ ..+..+.+|-+.
T Consensus       153 s~D~---~~l~~as--~~ik~~~~~~kevv~-------~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  153 SPDG---KILLTAS--RQIKVLDIETKEVVI-------TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             cCCC---CEEEecc--ceEEEEEccCceEEE-------EecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            9986   5777775  689999999988654       56899999999999876     6666654 456668888877


Q ss_pred             C
Q 009203          498 Y  498 (540)
Q Consensus       498 ~  498 (540)
                      .
T Consensus       221 ~  221 (541)
T KOG4547|consen  221 K  221 (541)
T ss_pred             c
Confidence            5

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=1.2e-09  Score=107.66  Aligned_cols=233  Identities=12%  Similarity=0.025  Sum_probs=133.5

Q ss_pred             cccccCceEEEEEecCCCc--EEEEEeCCc--eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203          219 SSLHKRKLRSLSLNPVNEQ--LFVTSALDG--VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT  294 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~--~l~tg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~  294 (540)
                      +......+.+-+|+||+..  ++++...+|  .|.+.++..++. ..+ .       ...+.....+|+|||+.|+....
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~l-t-------~~~g~~~~p~wSPDG~~Laf~s~  250 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKI-L-------ALQGNQLMPTFSPRKKLLAFISD  250 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEe-e-------cCCCCccceEECCCCCEEEEEEC
Confidence            4444556778899997333  233444444  466667776542 222 1       11223456899999998887621


Q ss_pred             c-CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEE--ecCCCCCccccceeec
Q 009203          295 A-DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLW--SERDAEDSWKPKALHR  370 (540)
Q Consensus       295 ~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~  370 (540)
                      . |..+-.+.+|++..+...........   ..+.....+|+| ||+.|+..+ .+|...+|  ++.....  ....+. 
T Consensus       251 ~~g~~di~~~~~~~~~g~~g~~~~lt~~---~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~lt-  323 (428)
T PRK01029        251 RYGNPDLFIQSFSLETGAIGKPRRLLNE---AFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRLLT-  323 (428)
T ss_pred             CCCCcceeEEEeecccCCCCcceEeecC---CCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECccccc--ceEEec-
Confidence            1 11233445577765321122233322   113346789999 988777665 45655555  4432111  022222 


Q ss_pred             ccCCcceeEEEeccCCCEEEEEeCC---CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE-EEcC--CCeEEE
Q 009203          371 NLHSSAVMGVAGMQQKQIVLSAGAD---KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ-TGTP--GRQLRL  444 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~--dg~v~i  444 (540)
                       .+...+....|+|||+.|+..+.+   ..|.+||+.+++...............|+|++   ..|+ +...  ...|.+
T Consensus       324 -~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG---~~L~f~~~~~g~~~L~~  399 (428)
T PRK01029        324 -KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDS---LHLVYSAGNSNESELYL  399 (428)
T ss_pred             -cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCC---CEEEEEECCCCCceEEE
Confidence             233566788999999998876653   36999999988765443333455678899987   3443 3332  356888


Q ss_pred             EECCCCcceeeeeccccccCccccCeEEEEEcCCC
Q 009203          445 YDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG  479 (540)
Q Consensus       445 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  479 (540)
                      +|+.++.....        ....+.+...+|+|-.
T Consensus       400 vdl~~g~~~~L--------t~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        400 ISLITKKTRKI--------VIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EECCCCCEEEe--------ecCCCcccCceecCCC
Confidence            89887653221        1123345567787743

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=3.8e-09  Score=104.15  Aligned_cols=223  Identities=14%  Similarity=0.095  Sum_probs=129.6

Q ss_pred             CCceeEEEecCCCeEE---EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CC-
Q 009203          275 RWPEDIAWHPQGNSLF---SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DH-  349 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~---s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg-  349 (540)
                      ..+.+-+|+|||+.++   +.+.  .....|.+.++.++.. ..+..+.      +.....+|+| ||+.|+..+. +| 
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~--~g~~~I~~~~l~~g~~-~~lt~~~------g~~~~p~wSP-DG~~Laf~s~~~g~  254 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYK--LGVPKIFLGSLENPAG-KKILALQ------GNQLMPTFSP-RKKLLAFISDRYGN  254 (428)
T ss_pred             CCcccceEccCCCceEEEEEEcc--CCCceEEEEECCCCCc-eEeecCC------CCccceEECC-CCCEEEEEECCCCC
Confidence            4456789999998533   3311  2235688888887643 3333332      3355689999 9988876553 22 


Q ss_pred             ---cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCe--EEEEECCC--CCeeeeeccCccEEEE
Q 009203          350 ---AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKR--IIGFDAGV--GRADFKHQIESKCMSV  421 (540)
Q Consensus       350 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~--i~iwd~~~--~~~~~~~~~~~~~~~~  421 (540)
                         .+.+|++..+... ....+.. .........+|+|||+.|+..+ .+|.  |+++++..  +...............
T Consensus       255 ~di~~~~~~~~~g~~g-~~~~lt~-~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p  332 (428)
T PRK01029        255 PDLFIQSFSLETGAIG-KPRRLLN-EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP  332 (428)
T ss_pred             cceeEEEeecccCCCC-cceEeec-CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence               3444777653210 0122221 1223446789999999887765 4564  44445542  2222222223345677


Q ss_pred             eecCCCCCceEEEEEcC-C--CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC---CCcEEEEe
Q 009203          422 LPNPCDFNLFMVQTGTP-G--RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA---DPVIHLFD  495 (540)
Q Consensus       422 ~~~~~~~~~~~l~~~~~-d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~---dg~i~iwd  495 (540)
                      .|+|++   ..|+..+. +  ..|.+||+.+++....        ......+....|+|||++|+..+.   ...|++||
T Consensus       333 ~wSPDG---~~Laf~~~~~g~~~I~v~dl~~g~~~~L--------t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd  401 (428)
T PRK01029        333 AWSPDG---KKIAFCSVIKGVRQICVYDLATGRDYQL--------TTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS  401 (428)
T ss_pred             eECCCC---CEEEEEEcCCCCcEEEEEECCCCCeEEc--------cCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            899988   45554433 2  4699999987764321        111234567899999998875433   35688888


Q ss_pred             ccCCCCcccccccccccceeEEEEcCCC
Q 009203          496 IRYSANKPSQSIRAHQKRVFKAVWHYSH  523 (540)
Q Consensus       496 ~~~~~~~~~~~~~~h~~~i~~l~~s~~~  523 (540)
                      +..  ++ ...+....+.+...+|+|-.
T Consensus       402 l~~--g~-~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        402 LIT--KK-TRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCC--CC-EEEeecCCCcccCceecCCC
Confidence            875  33 22333344556778888754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.8e-09  Score=107.38  Aligned_cols=223  Identities=13%  Similarity=0.118  Sum_probs=130.7

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeC-Cc--eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEe
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSAL-DG--VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAH  293 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~  293 (540)
                      +.+..+...+.+..|+|| |+.|+..+. ++  .|.+||+.+++.. .+ ..       ........+|+|||+.|+...
T Consensus       211 ~~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~~-~l-t~-------~~g~~~~~~wSPDG~~La~~~  280 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVRE-KV-TS-------FPGINGAPRFSPDGKKLALVL  280 (448)
T ss_pred             eEeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCeE-Ee-cC-------CCCCcCCeeECCCCCEEEEEE
Confidence            345566778899999997 776666543 33  5788888776531 11 11       112234689999999887642


Q ss_pred             ecCCCCC--eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CC--cEEEEecCCCCCcccccee
Q 009203          294 TADSGDS--QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DH--AVVLWSERDAEDSWKPKAL  368 (540)
Q Consensus       294 ~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~  368 (540)
                         +.++  .|.+||+.++.    ...+..   +.......+|+| +++.|+..+. ++  .|+++|+.+++.    ..+
T Consensus       281 ---~~~g~~~Iy~~dl~tg~----~~~lt~---~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~----~~L  345 (448)
T PRK04792        281 ---SKDGQPEIYVVDIATKA----LTRITR---HRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKV----SRL  345 (448)
T ss_pred             ---eCCCCeEEEEEECCCCC----eEECcc---CCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCE----EEE
Confidence               4445  47778887652    222222   233467789999 8887766553 33  466777777652    333


Q ss_pred             ecccCCcceeEEEeccCCCEEEEEeCC-C--eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCe--EE
Q 009203          369 HRNLHSSAVMGVAGMQQKQIVLSAGAD-K--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ--LR  443 (540)
Q Consensus       369 ~~~~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--v~  443 (540)
                      ..  ........+|+|||++|+..+.+ +  .|.++|+.++....... ........|+|++.  .++++...++.  +.
T Consensus       346 t~--~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-~~~d~~ps~spdG~--~I~~~~~~~g~~~l~  420 (448)
T PRK04792        346 TF--EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS-TRLDESPSVAPNGT--MVIYSTTYQGKQVLA  420 (448)
T ss_pred             ec--CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC-CCCCCCceECCCCC--EEEEEEecCCceEEE
Confidence            22  22223457899999998876653 3  46678888776533221 11222446888873  23333334443  66


Q ss_pred             EEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203          444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSP  477 (540)
Q Consensus       444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  477 (540)
                      +++..... ..       .+..+.+.+...+|+|
T Consensus       421 ~~~~~G~~-~~-------~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        421 AVSIDGRF-KA-------RLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEECCCCc-eE-------ECcCCCCCcCCCccCC
Confidence            77764332 11       1223344566777876

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=7.2e-09  Score=97.76  Aligned_cols=282  Identities=11%  Similarity=0.133  Sum_probs=178.5

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC-------C
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD-------S  297 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~-------~  297 (540)
                      .=+-+.||| .|.+|+|--..| |.+|--.+-.....+         .|. .|.-+.|||+.++|++-+...       .
T Consensus       212 Tetyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF---------~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~  279 (698)
T KOG2314|consen  212 TETYVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRF---------YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDN  279 (698)
T ss_pred             eeeeEEecC-CceEEEEEeccc-eeeecCccHHHHHhc---------cCC-CceeeecCCccceEEEecCCccccCcccC
Confidence            347799999 599999976654 899976665555555         232 378899999999999962210       1


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      ....+.|||+.+|........+..   ....-.-..||. |+.++|.-.. .+|.||+...-.. ...+.+    .-..|
T Consensus       280 e~~~l~IWDI~tG~lkrsF~~~~~---~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~l-ld~Ksl----ki~gI  349 (698)
T KOG2314|consen  280 EGQQLIIWDIATGLLKRSFPVIKS---PYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFML-LDKKSL----KISGI  349 (698)
T ss_pred             CCceEEEEEccccchhcceeccCC---CccccceEEecc-CCceeEEecc-ceEEEEecCceee-eccccc----CCccc
Confidence            236899999999854444444322   112233468998 8999987776 5699998876432 111112    34668


Q ss_pred             eEEEeccCCCEEEEEeC-----CCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEE----------EcCCCe
Q 009203          378 MGVAGMQQKQIVLSAGA-----DKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQT----------GTPGRQ  441 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~----------~~~dg~  441 (540)
                      ....|+|.+++|+.=+.     -..+.+..+-+++.+..... ...-+.+.|-.++   .+|+.          .+.-..
T Consensus       350 r~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g---dyLcvkvdR~tK~~~~g~f~n  426 (698)
T KOG2314|consen  350 RDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG---DYLCVKVDRHTKSKVKGQFSN  426 (698)
T ss_pred             cCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC---cEEEEEEEeeccccccceEee
Confidence            89999999888875432     12355666655555443222 1222233443333   34432          222335


Q ss_pred             EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeccCCCCc--ccccccccccceeE
Q 009203          442 LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA---DPVIHLFDIRYSANK--PSQSIRAHQKRVFK  516 (540)
Q Consensus       442 v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~---dg~i~iwd~~~~~~~--~~~~~~~h~~~i~~  516 (540)
                      +.|+.++....++....       -...|...+|-|.|+.+++-+.   ..++.+|.+.+...+  ++..+.  ....+.
T Consensus       427 ~eIfrireKdIpve~ve-------lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~  497 (698)
T KOG2314|consen  427 LEIFRIREKDIPVEVVE-------LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANT  497 (698)
T ss_pred             EEEEEeeccCCCceeee-------cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccce
Confidence            77777777665554432       3457889999999988776543   367999998842222  333443  245688


Q ss_pred             EEEcCCCCEEEEE---EcCCcEEEEeC
Q 009203          517 AVWHYSHPLLISI---SSDLNIGLHKI  540 (540)
Q Consensus       517 l~~s~~~~~l~s~---~~dg~v~iw~l  540 (540)
                      +.|+|.|+++|.+   |..|.+.++|.
T Consensus       498 vfwsPkG~fvvva~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  498 VFWSPKGRFVVVAALVSRRGDLEFYDT  524 (698)
T ss_pred             EEEcCCCcEEEEEEecccccceEEEec
Confidence            9999999988776   45677888774

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.25  E-value=3.6e-09  Score=98.77  Aligned_cols=282  Identities=9%  Similarity=0.071  Sum_probs=178.3

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC-----
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD-----  296 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~-----  296 (540)
                      -.-++..++||| .|.+|++.... .|.+|.-.....+.++..          ..|..+.|+|.+++|.+-...+     
T Consensus        31 ~~~p~~~~~~SP-~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~----------~~V~~~~fSP~~kYL~tw~~~pi~~pe   98 (561)
T COG5354          31 ENWPVAYVSESP-LGTYLFSEHAA-GVECWGGPSKAKLVRFRH----------PDVKYLDFSPNEKYLVTWSREPIIEPE   98 (561)
T ss_pred             cCcchhheeecC-cchheehhhcc-ceEEccccchhheeeeec----------CCceecccCcccceeeeeccCCccChh
Confidence            456899999999 59999887655 599999877664444422          3488899999999999872221     


Q ss_pred             ------CCCCeEEEEecCCCCCceeEEeecCCCCccccee-EEEEeCCCCCEEEEEecCCcEEEEecCCCCCc-ccccee
Q 009203          297 ------SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIIN-SIIFLPWENPCFATGGSDHAVVLWSERDAEDS-WKPKAL  368 (540)
Q Consensus       297 ------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~  368 (540)
                            ..+..+.+||+.++   ..+..+...... ...+ -+.|+- +..+++-- ....++|+++ ++... .....+
T Consensus        99 ~e~sp~~~~n~~~vwd~~sg---~iv~sf~~~~q~-~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~l  171 (561)
T COG5354          99 IEISPFTSKNNVFVWDIASG---MIVFSFNGISQP-YLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNL  171 (561)
T ss_pred             hccCCccccCceeEEeccCc---eeEeeccccCCc-ccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhc
Confidence                  12346999999987   445555443221 1133 678887 66665544 2356999998 43321 111111


Q ss_pred             ecccCCcceeEEEeccCC--CEEEE-----EeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEE----
Q 009203          369 HRNLHSSAVMGVAGMQQK--QIVLS-----AGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTG----  436 (540)
Q Consensus       369 ~~~~~~~~v~~l~~s~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~----  436 (540)
                          ....|....|+|.|  ..|+.     .+..+.+++|.+..+..+.... .......+.|++.+....+++-.    
T Consensus       172 ----r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks  247 (561)
T COG5354         172 ----RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS  247 (561)
T ss_pred             ----cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence                23568888999864  33443     4557889999998776655433 34455677787776432222211    


Q ss_pred             ----cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE--EeCCCcEEEEeccCCCCccccccccc
Q 009203          437 ----TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS--GSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       437 ----~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                          .....++|+++........        .+..++|..++|.|+++.+++  |-.+-.+.++|++.   .....+.  
T Consensus       248 nKsyfgesnLyl~~~~e~~i~V~--------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~---Nl~~~~P--  314 (561)
T COG5354         248 NKSYFGESNLYLLRITERSIPVE--------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG---NLRFYFP--  314 (561)
T ss_pred             ccceeccceEEEEeeccccccee--------ccccccceeeeecccCCceeEEecccccceeeccccc---ceEEecC--
Confidence                1135678888874443321        144679999999998877654  45778899999984   4333332  


Q ss_pred             ccceeEEEEcCCCCEEEEEEcC---CcEEEEe
Q 009203          511 QKRVFKAVWHYSHPLLISISSD---LNIGLHK  539 (540)
Q Consensus       511 ~~~i~~l~~s~~~~~l~s~~~d---g~v~iw~  539 (540)
                      ...=+.+.|+|.+++++.++-|   |.|-+|+
T Consensus       315 e~~rNT~~fsp~~r~il~agF~nl~gni~i~~  346 (561)
T COG5354         315 EQKRNTIFFSPHERYILFAGFDNLQGNIEIFD  346 (561)
T ss_pred             CcccccccccCcccEEEEecCCccccceEEec
Confidence            3334566777777777776644   5566665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.21  E-value=4.6e-08  Score=91.78  Aligned_cols=266  Identities=11%  Similarity=-0.002  Sum_probs=151.9

Q ss_pred             ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee------cCCCCCeEEEEecCCCCCceeEEee
Q 009203          246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT------ADSGDSQISVLNLNKTKGRACVTFL  319 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~------~~~~d~~i~vwd~~~~~~~~~~~~~  319 (540)
                      ++|.+.|..+.+.+.++.....         ...+ ++|||+.|+++..      .|-.+..|.+||..+.+   .+..+
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~---------P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~---~~~~i   93 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFL---------PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL---PIADI   93 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCC---------Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc---EEeEE
Confidence            7899999999877666643221         1234 9999999988831      01168999999999873   34333


Q ss_pred             cCCCC----cccceeEEEEeCCCCCEEEEEe-c-CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe
Q 009203          320 DDKPH----VKGIINSIIFLPWENPCFATGG-S-DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG  393 (540)
Q Consensus       320 ~~~~~----~~~~v~~~~~~p~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~  393 (540)
                      ...+.    .......++++| +|++|+... . +..|.+.|+.+++.+.....      .+...-+..+++..+  +-+
T Consensus        94 ~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v------p~~~~vy~t~e~~~~--~~~  164 (352)
T TIGR02658        94 ELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV------PDCYHIFPTANDTFF--MHC  164 (352)
T ss_pred             ccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC------CCCcEEEEecCCccE--EEe
Confidence            32110    122345789999 998888665 3 78999999999875222211      111111122222222  223


Q ss_pred             CCCeEEEEECCC-CCeeee-ecc--C--ccE-EEEeecC-CCCCceEEEEEcCCCeEEEEECCCCcceee-eecccccc-
Q 009203          394 ADKRIIGFDAGV-GRADFK-HQI--E--SKC-MSVLPNP-CDFNLFMVQTGTPGRQLRLYDIRLRQTEIH-AFGWKQES-  463 (540)
Q Consensus       394 ~dg~i~iwd~~~-~~~~~~-~~~--~--~~~-~~~~~~~-~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~-  463 (540)
                      .||......+.. |+.... ...  .  ..+ ..-.+.+ ++   .++.+... |+|.+.|+........ .+...... 
T Consensus       165 ~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg---~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~  240 (352)
T TIGR02658       165 RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG---RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE  240 (352)
T ss_pred             ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCC---cEEEEecC-CeEEEEecCCCcceecceeeeccccc
Confidence            344444433322 221100 000  0  000 0002233 33   45555555 9999999755432111 11100000 


Q ss_pred             ---CccccCeEEEEEcCCCCEEEEEe----------CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC-EEEEE
Q 009203          464 ---SESQSALINQSWSPDGLYITSGS----------ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-LLISI  529 (540)
Q Consensus       464 ---~~~~~~v~~~~~sp~g~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~  529 (540)
                         .-..+.+.-++++|+|+.+++..          ..+.|.++|..+  .+.+..+.. ...++.++++||++ +|++.
T Consensus       241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t--~kvi~~i~v-G~~~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT--GKRLRKIEL-GHEIDSINVSQDAKPLLYAL  317 (352)
T ss_pred             cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC--CeEEEEEeC-CCceeeEEECCCCCeEEEEe
Confidence               01233444599999999888743          124699999887  677777663 34789999999999 77766


Q ss_pred             E-cCCcEEEEeC
Q 009203          530 S-SDLNIGLHKI  540 (540)
Q Consensus       530 ~-~dg~v~iw~l  540 (540)
                      . .++.|.+.|.
T Consensus       318 n~~s~~VsViD~  329 (352)
T TIGR02658       318 STGDKTLYIFDA  329 (352)
T ss_pred             CCCCCcEEEEEC
Confidence            5 6788999874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.21  E-value=8.2e-08  Score=102.51  Aligned_cols=303  Identities=15%  Similarity=0.129  Sum_probs=179.2

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCC-----------------------CCCcceeecccc-----------
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS-----------------------RGSGASLLSTTD-----------  267 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~-----------------------~~~~~~~~~~~~-----------  267 (540)
                      -..+|.|++|||| +.+|+..+.++++.+-+..-                       |+...++.+...           
T Consensus       119 vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  119 VDSGILAASWSPD-EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EcCcEEEEEECCC-cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            3468999999997 88999998888887754221                       000011100000           


Q ss_pred             ------cCCCCCCCCceeEEEecCCCeEEEEeecC--CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC
Q 009203          268 ------CLSPKHRRWPEDIAWHPQGNSLFSAHTAD--SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN  339 (540)
Q Consensus       268 ------~~~~~h~~~V~~~~~~~~~~~l~s~~~~~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  339 (540)
                            .... +.+.-..++|-.||.++|+.+...  +.-..++||+-+ |   ....+.+.   -.+--.+++|-| .|
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G---~L~stSE~---v~gLe~~l~WrP-sG  268 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G---ELQSTSEP---VDGLEGALSWRP-SG  268 (928)
T ss_pred             CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c---eEEecccc---CCCccCCccCCC-CC
Confidence                  0001 333556799999999999984421  124789999877 3   22222221   233445789999 99


Q ss_pred             CEEEEEec---CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee----eee
Q 009203          340 PCFATGGS---DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD----FKH  412 (540)
Q Consensus       340 ~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~  412 (540)
                      ++||+...   ...|.+|.-++-+. ..+ .+........|..+.|++|+..|+....|. |.+|-..+-.--    ..+
T Consensus       269 ~lIA~~q~~~~~~~VvFfErNGLrh-geF-~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~  345 (928)
T PF04762_consen  269 NLIASSQRLPDRHDVVFFERNGLRH-GEF-TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF  345 (928)
T ss_pred             CEEEEEEEcCCCcEEEEEecCCcEe-eeE-ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc
Confidence            99998764   34566776554332 001 111123456799999999999999987665 999998875432    222


Q ss_pred             ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEEC----CCCc-----------------ceeeeecccc-------ccC
Q 009203          413 QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDI----RLRQ-----------------TEIHAFGWKQ-------ESS  464 (540)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~----~~~~-----------------~~~~~~~~~~-------~~~  464 (540)
                      ........+.|+|..+.  .|...+.+|.+..++.    ....                 ..+..+....       ..-
T Consensus       346 ~~~~~~~~~~Wdpe~p~--~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l  423 (928)
T PF04762_consen  346 SSSESVNFVKWDPEKPL--RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL  423 (928)
T ss_pred             cCCCCCCceEECCCCCC--EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE
Confidence            33334445889998764  3444444455544332    1110                 0000010000       001


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc------cccccc----------ccccceeEEEEcCCCCEEEE
Q 009203          465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK------PSQSIR----------AHQKRVFKAVWHYSHPLLIS  528 (540)
Q Consensus       465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~------~~~~~~----------~h~~~i~~l~~s~~~~~l~s  528 (540)
                      ....+|.+++|++++..+++-..||.|.+|........      ....+.          .....+..++|..+..+++.
T Consensus       424 ~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (928)
T PF04762_consen  424 ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVL  503 (928)
T ss_pred             cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEE
Confidence            23568999999999988999999999999996542111      111111          12335788899887776666


Q ss_pred             EEcC---CcEEEEe
Q 009203          529 ISSD---LNIGLHK  539 (540)
Q Consensus       529 ~~~d---g~v~iw~  539 (540)
                      ...+   ..+.+++
T Consensus       504 ~~~~~~~~~i~~~~  517 (928)
T PF04762_consen  504 SDSDSNQSKIVLVD  517 (928)
T ss_pred             EecCcccceEEEEE
Confidence            6554   4555554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.20  E-value=1.9e-08  Score=93.18  Aligned_cols=158  Identities=12%  Similarity=0.107  Sum_probs=118.2

Q ss_pred             EEEeccchhcccccCceEEEEEecCCCcEEEEEeCCc-eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCe
Q 009203          210 IHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDG-VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNS  288 (540)
Q Consensus       210 i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  288 (540)
                      ...|++..+--+|.+.|.-..+.-+ +.-++.|..|| .+-|+|..+++.....         +.-+.|.++..+++|++
T Consensus       346 ~~~~~~~~iqv~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e~kr~e---------~~lg~I~av~vs~dGK~  415 (668)
T COG4946         346 MRPWDGYSIQVGKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGEVKRIE---------KDLGNIEAVKVSPDGKK  415 (668)
T ss_pred             ECCCCCeeEEcCCCCceEEEEEccC-CcceEEeccCCceEEEEecCCceEEEee---------CCccceEEEEEcCCCcE
Confidence            3445555666789999999999886 66889999999 8999999887643222         34466899999999999


Q ss_pred             EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC----cEEEEecCCCCCccc
Q 009203          289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH----AVVLWSERDAEDSWK  364 (540)
Q Consensus       289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg----~i~iwd~~~~~~~~~  364 (540)
                      ++++    .....|.+.|++++..    +....  ...+-|+.++|+| ++.+||.+--+|    .|++||+.+++.   
T Consensus       416 ~vva----Ndr~el~vididngnv----~~idk--S~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki---  481 (668)
T COG4946         416 VVVA----NDRFELWVIDIDNGNV----RLIDK--SEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI---  481 (668)
T ss_pred             EEEE----cCceEEEEEEecCCCe----eEecc--cccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE---
Confidence            9998    8888999999998743    22222  1246799999999 999999886654    689999999873   


Q ss_pred             cceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203          365 PKALHRNLHSSAVMGVAGMQQKQIVLSAGA  394 (540)
Q Consensus       365 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  394 (540)
                       ..+..  ..+.=.+-+|.|++++|..-+.
T Consensus       482 -y~vTT--~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         482 -YDVTT--PTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             -EEecC--CcccccCcccCCCCcEEEEEec
Confidence             22221  3333456688999998887654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.19  E-value=9.7e-08  Score=89.63  Aligned_cols=246  Identities=14%  Similarity=0.069  Sum_probs=141.1

Q ss_pred             EecCCCcEEEEEe---------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          231 LNPVNEQLFVTSA---------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       231 ~spd~~~~l~tg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      ++||+..+.++.+         .+..|.+||..+.+...++........ ........++++|||++|++...  +.+..
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~-~~~~~~~~~~ls~dgk~l~V~n~--~p~~~  129 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF-LVGTYPWMTSLTPDNKTLLFYQF--SPSPA  129 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh-hccCccceEEECCCCCEEEEecC--CCCCE
Confidence            9997444444445         578999999999988777754322100 01223447899999999998711  23789


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc-cceeecc----cCCcc
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK-PKALHRN----LHSSA  376 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~----~~~~~  376 (540)
                      |.+.|+.++   +.+..+..    .+...-+..++  ...+ .-+.||......+........ ...+...    ....+
T Consensus       130 V~VvD~~~~---kvv~ei~v----p~~~~vy~t~e--~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP  199 (352)
T TIGR02658       130 VGVVDLEGK---AFVRMMDV----PDCYHIFPTAN--DTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP  199 (352)
T ss_pred             EEEEECCCC---cEEEEEeC----CCCcEEEEecC--CccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence            999999986   34444432    11122222222  2222 222344444433322111000 0000000    00111


Q ss_pred             eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCe-----eeeecc--------CccEEEEeecCCCCCceEEEE-E-----
Q 009203          377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRA-----DFKHQI--------ESKCMSVLPNPCDFNLFMVQT-G-----  436 (540)
Q Consensus       377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~--------~~~~~~~~~~~~~~~~~~l~~-~-----  436 (540)
                          .|.+ +|.+++.... |.|.+.|+.....     ......        .....-+++++++.   .+++ .     
T Consensus       200 ----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~---~lyV~~~~~~~  271 (352)
T TIGR02658       200 ----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD---RIYLLADQRAK  271 (352)
T ss_pred             ----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC---EEEEEecCCcc
Confidence                3455 7877777666 9999999654332     111111        12222378888774   3333 2     


Q ss_pred             ----cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEeccCCCCcccccc
Q 009203          437 ----TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGS-ADPVIHLFDIRYSANKPSQSI  507 (540)
Q Consensus       437 ----~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~-~dg~i~iwd~~~~~~~~~~~~  507 (540)
                          ...+.|.++|..+.+......        -...+..++++|||+ +|++.. .++.|.++|..+  ++.+..+
T Consensus       272 ~thk~~~~~V~ViD~~t~kvi~~i~--------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t--~k~i~~i  338 (352)
T TIGR02658       272 WTHKTASRFLFVVDAKTGKRLRKIE--------LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET--GKELSSV  338 (352)
T ss_pred             ccccCCCCEEEEEECCCCeEEEEEe--------CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC--CeEEeee
Confidence                122589999999888654432        134789999999999 777665 578899999997  6676666

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.19  E-value=8.2e-10  Score=105.02  Aligned_cols=186  Identities=11%  Similarity=0.068  Sum_probs=139.0

Q ss_pred             CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec------c--------------CCCEEEEEeCCCe
Q 009203          338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM------Q--------------QKQIVLSAGADKR  397 (540)
Q Consensus       338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s------~--------------~~~~l~~~~~dg~  397 (540)
                      ...++|....||.+++||...++....+....  .-.+..++..|.      |              +...++.|...|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccch--hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            56789999999999999999887422222211  123344444442      2              3357788899999


Q ss_pred             EEEEECCCCCeeeeec---cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEE
Q 009203          398 IIGFDAGVGRADFKHQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQS  474 (540)
Q Consensus       398 i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~  474 (540)
                      |.+|+...|+......   +.+.+.++.++..-   ..|.+++.|+.+..|+........       ........+.+++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~---~ciyS~~ad~~v~~~~~~~~~~~~-------~~~~~~~~~~sl~  151 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL---GCIYSVGADLKVVYILEKEKVIIR-------IWKEQKPLVSSLC  151 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccccc---CceEecCCceeEEEEecccceeee-------eeccCCCccceEE
Confidence            9999999998866543   45667777766544   589999999999999998766432       2234456788999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC-----CCEEE-EEEcCCcEEEEe
Q 009203          475 WSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS-----HPLLI-SISSDLNIGLHK  539 (540)
Q Consensus       475 ~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~-----~~~l~-s~~~dg~v~iw~  539 (540)
                      .+|||..+++++  +.|.+||+++  .+.+..|.+|.++|.++.|.-+     |.++. +...+.-+.+|-
T Consensus       152 is~D~~~l~~as--~~ik~~~~~~--kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  152 ISPDGKILLTAS--RQIKVLDIET--KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             EcCCCCEEEecc--ceEEEEEccC--ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            999999999985  7899999998  8999999999999999999876     55554 445566677774

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.18  E-value=1.4e-10  Score=122.71  Aligned_cols=185  Identities=16%  Similarity=0.178  Sum_probs=140.2

Q ss_pred             cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC
Q 009203          327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG  406 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~  406 (540)
                      ..|.++.-+| ...+.+||+.||.|++|....++.+..+.    ......|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus      2209 ~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~r----t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2209 ENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFR----TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             CceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEee----ccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            4588888889 77788999999999999999887633222    2344889999999999999999999999999998 4


Q ss_pred             Ceeeeec-cCccEEEEeecCCCCCceEEEEE---cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203          407 RADFKHQ-IESKCMSVLPNPCDFNLFMVQTG---TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI  482 (540)
Q Consensus       407 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  482 (540)
                      ++....+ +......+.|-..     .++++   +.++.+.+||..-......      ....|.+.++++++-|....|
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~s-----~~~tag~s~d~~n~~lwDtl~~~~~s~------v~~~H~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIGS-----LLATAGRSSDNRNVCLWDTLLPPMNSL------VHTCHDGGATVLAYAPKHQLL 2351 (2439)
T ss_pred             cceeccccCCccccceeeeeh-----hhhccccCCCCCcccchhcccCcccce------eeeecCCCceEEEEcCcceEE
Confidence            4433322 2333344555442     34443   4568899999764332111      126799999999999999999


Q ss_pred             EEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          483 TSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       483 ~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++|+.+|.|++||++.  .+..++++.         ++ ...++++|+..|.++||++
T Consensus      2352 isggr~G~v~l~D~rq--rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQ--RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             EecCCcCcEEEeehHH--HHHHHHhhh---------hh-hhheeeccCcccceEEEEc
Confidence            9999999999999996  566666654         44 5679999999999999985

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=1.7e-09  Score=104.71  Aligned_cols=241  Identities=13%  Similarity=0.142  Sum_probs=169.1

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee---------EEeecCCCCcccceeEEEEeCCCCCEEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC---------VTFLDDKPHVKGIINSIIFLPWENPCFATG  345 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  345 (540)
                      ....|++|+....+|+.|    +.||.+++..+.+......         +..-+...+|.+.|.-+.|+. ..+.|-+.
T Consensus        15 vkL~c~~WNke~gyIAcg----G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtS   89 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACG----GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTS   89 (1189)
T ss_pred             ceEEEEEEcccCCeEEec----cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-cccccccc
Confidence            446799999999999999    9999999998876432111         111112235788999999998 88889999


Q ss_pred             ecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeec
Q 009203          346 GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPN  424 (540)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~  424 (540)
                      ..+|.|.+|-+-.+..   ...+......+-|.+++|+.||..+.....||.|.+=.++ |..+...... .....+.|+
T Consensus        90 Dt~GlIiVWmlykgsW---~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws  165 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSW---CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWS  165 (1189)
T ss_pred             CCCceEEEEeeecccH---HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeec
Confidence            9999999999988764   2223334466789999999999999999999999887776 4444443333 333467888


Q ss_pred             CCCCCceEEEEEcCCCeEEEEECCCCc-------ceeeeeccccccCccccCeEEEEEc--------CCCCEEEEEeCCC
Q 009203          425 PCDFNLFMVQTGTPGRQLRLYDIRLRQ-------TEIHAFGWKQESSESQSALINQSWS--------PDGLYITSGSADP  489 (540)
Q Consensus       425 ~~~~~~~~l~~~~~dg~v~i~d~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s--------p~g~~l~sg~~dg  489 (540)
                      ++.   ..++.+-.+|.+.+||....-       +.+...+   .+......|-.+.|.        ||...|+++-.+|
T Consensus       166 ~D~---~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg---~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG  239 (1189)
T KOG2041|consen  166 EDL---EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTG---IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG  239 (1189)
T ss_pred             ccH---HHHHhhhcCCcEEEecccccHHHhhhhceEEeeee---eecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence            877   567777788999999986421       1111111   111122235555553        4778999999999


Q ss_pred             cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203          490 VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       490 ~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      .+.|..-.+. ..++..-.  .-.|....|+++|.+|+.+|.|.
T Consensus       240 r~QiMR~eND-~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  240 RMQIMRSEND-PEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             eehhhhhcCC-CCCeEEec--ccEeecceecCCCcEEEEccCcc
Confidence            9988776653 33332222  24689999999999999998653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.16  E-value=2.9e-08  Score=97.38  Aligned_cols=267  Identities=11%  Similarity=0.066  Sum_probs=157.7

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      +..++.++.+|.+..+|..+++...+....         ..+.+ ...  .+..++.+    ..++.|..||..+++...
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---------~~~~~~p~v--~~~~v~v~----~~~g~l~a~d~~tG~~~W  169 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS---------SEVLSPPLV--ANGLVVVR----TNDGRLTALDAATGERLW  169 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccC---------ceeecCCEE--ECCEEEEE----CCCCeEEEEEcCCCceee
Confidence            456778888999999999998876654321         11111 111  24566666    789999999999874322


Q ss_pred             eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC--cceeEEEecc--CCCEEE
Q 009203          315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS--SAVMGVAGMQ--QKQIVL  390 (540)
Q Consensus       315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~l~~s~--~~~~l~  390 (540)
                      ............. ..+....  + ..++.+..++.+..+|..+++..|........+..  ..+..+.-+|  .+..++
T Consensus       170 ~~~~~~~~~~~~~-~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy  245 (377)
T TIGR03300       170 TYSRVTPALTLRG-SASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY  245 (377)
T ss_pred             EEccCCCceeecC-CCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence            2111100000000 0111222  2 46778888899999999999876543321100000  0000111111  356788


Q ss_pred             EEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCe
Q 009203          391 SAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSAL  470 (540)
Q Consensus       391 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v  470 (540)
                      +++.+|.++.||..+|+.+........ ......  +   ..+++++.+|.+..+|..+++......    .+..  ...
T Consensus       246 ~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~~--~---~~vyv~~~~G~l~~~d~~tG~~~W~~~----~~~~--~~~  313 (377)
T TIGR03300       246 AVSYQGRVAALDLRSGRVLWKRDASSY-QGPAVD--D---NRLYVTDADGVVVALDRRSGSELWKND----ELKY--RQL  313 (377)
T ss_pred             EEEcCCEEEEEECCCCcEEEeeccCCc-cCceEe--C---CEEEEECCCCeEEEEECCCCcEEEccc----cccC--Ccc
Confidence            888999999999999988765543221 111111  1   367778889999999998887543211    1111  111


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccccee-EEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          471 INQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF-KAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       471 ~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~-~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .+...  .+..|++++.+|.|+++|..+  ++.+..+..+...+. +.++. + ..|+.++.||.|..|.
T Consensus       314 ssp~i--~g~~l~~~~~~G~l~~~d~~t--G~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       314 TAPAV--VGGYLVVGDFEGYLHWLSRED--GSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR  377 (377)
T ss_pred             ccCEE--ECCEEEEEeCCCEEEEEECCC--CCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence            22222  467889999999999999987  677777765554332 22332 3 3588889999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=6.6e-08  Score=94.99  Aligned_cols=351  Identities=9%  Similarity=0.013  Sum_probs=213.3

Q ss_pred             CCeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcc
Q 009203          146 GSSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSS  220 (540)
Q Consensus       146 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~  220 (540)
                      ..+..+..|...|+.+.+.|.+..+.-..                   ...+-..++++--.+.|.+||..     .-+.
T Consensus        46 q~iqsie~h~s~V~~VrWap~~~p~~llS-------------------~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~  106 (1062)
T KOG1912|consen   46 QLIQSIELHQSAVTSVRWAPAPSPRDLLS-------------------PSSSQLLIASADISGRIILVDFVLASVINWLS  106 (1062)
T ss_pred             hhhhccccCccceeEEEeccCCCchhccC-------------------ccccceeEEeccccCcEEEEEehhhhhhhhhc
Confidence            34556678889999999999865443100                   00122356777777889999775     2278


Q ss_pred             cccCceEEEEEec---CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecC
Q 009203          221 LHKRKLRSLSLNP---VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTAD  296 (540)
Q Consensus       221 ~h~~~V~~l~~sp---d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~  296 (540)
                      .|.++|..++|-|   ++..+|+.-....++.+|+..+|+........        .....|+.+.| |.+.+...    
T Consensus       107 ~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys--------~~iLs~f~~DPfd~rh~~~l----  174 (1062)
T KOG1912|consen  107 HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS--------HEILSCFRVDPFDSRHFCVL----  174 (1062)
T ss_pred             CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC--------CcceeeeeeCCCCcceEEEE----
Confidence            8999999999976   22256666666789999999999876665322        23455677877 34455554    


Q ss_pred             CCCCeEEEEecCCCC-C---ceeEEeecCCC-------------Cccc---------ceeEEEEeCCCCCEEEEEecCCc
Q 009203          297 SGDSQISVLNLNKTK-G---RACVTFLDDKP-------------HVKG---------IINSIIFLPWENPCFATGGSDHA  350 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~-~---~~~~~~~~~~~-------------~~~~---------~v~~~~~~p~~~~~l~s~~~dg~  350 (540)
                      +..|.+.+-+.-... .   .+.++.-..+.             .+..         ....++|+| .-+.++.......
T Consensus       175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p-~~rn~lfi~~pre  253 (1062)
T KOG1912|consen  175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP-HWRNILFITFPRE  253 (1062)
T ss_pred             ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh-hhhceEEEEeccc
Confidence            566666655443111 0   11222211100             0000         012356777 4444444555678


Q ss_pred             EEEEecCCCCCccccceeecccCCcceeEEEeccC--CCEEEEEeCCCeEEEEECCC----------------CCeeee-
Q 009203          351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ--KQIVLSAGADKRIIGFDAGV----------------GRADFK-  411 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~----------------~~~~~~-  411 (540)
                      +.++|++-..++.   .+..  ..+.+.-+.+-|+  ...|++...||.+.+|-.+.                +..... 
T Consensus       254 llv~dle~~~~l~---vvpi--er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~v  328 (1062)
T KOG1912|consen  254 LLVFDLEYECCLA---VVPI--ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVV  328 (1062)
T ss_pred             eEEEcchhhceeE---EEEe--ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEE
Confidence            9999998766532   2222  3344455566554  45788888899888886543                111000 


Q ss_pred             --ecc------------------------------C-c------------cEEEEeec---------------CC-----
Q 009203          412 --HQI------------------------------E-S------------KCMSVLPN---------------PC-----  426 (540)
Q Consensus       412 --~~~------------------------------~-~------------~~~~~~~~---------------~~-----  426 (540)
                        ...                              . +            -...+.|+               .+     
T Consensus       329 r~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~s  408 (1062)
T KOG1912|consen  329 RPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSS  408 (1062)
T ss_pred             eechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCC
Confidence              000                              0 0            00000000               00     


Q ss_pred             --------------------CCC-----ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE
Q 009203          427 --------------------DFN-----LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY  481 (540)
Q Consensus       427 --------------------~~~-----~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  481 (540)
                                          +.+     ..+++.|...|+|.++|+.++...       ..+..|.+.|.++.|--...+
T Consensus       409 Gs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~-------~~fsvht~~VkgleW~g~ssl  481 (1062)
T KOG1912|consen  409 GSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVA-------ASFSVHTSLVKGLEWLGNSSL  481 (1062)
T ss_pred             CceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhh-------hhhcccccceeeeeeccceeE
Confidence                                000     147889999999999999987642       256778999999999655544


Q ss_pred             EEEE---------eCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          482 ITSG---------SADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       482 l~sg---------~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +-.+         +.-+.+.|-|++++-.+.++.+++ ...+|..+..+..|+||+..-.|.-+.+||+
T Consensus       482 vSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~  550 (1062)
T KOG1912|consen  482 VSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDL  550 (1062)
T ss_pred             EEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhh
Confidence            4322         223457788888854455554443 4569999999999999999999999999985

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.15  E-value=1.5e-07  Score=86.27  Aligned_cols=226  Identities=12%  Similarity=0.053  Sum_probs=148.4

Q ss_pred             eEEEec-CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC
Q 009203          279 DIAWHP-QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER  357 (540)
Q Consensus       279 ~~~~~~-~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  357 (540)
                      +++|.+ ++.++++-    ...+.|..|+..++   . ...+..     ....++++...++ .|+.+.. +.+.++|..
T Consensus         4 gp~~d~~~g~l~~~D----~~~~~i~~~~~~~~---~-~~~~~~-----~~~~G~~~~~~~g-~l~v~~~-~~~~~~d~~   68 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVD----IPGGRIYRVDPDTG---E-VEVIDL-----PGPNGMAFDRPDG-RLYVADS-GGIAVVDPD   68 (246)
T ss_dssp             EEEEETTTTEEEEEE----TTTTEEEEEETTTT---E-EEEEES-----SSEEEEEEECTTS-EEEEEET-TCEEEEETT
T ss_pred             ceEEECCCCEEEEEE----cCCCEEEEEECCCC---e-EEEEec-----CCCceEEEEccCC-EEEEEEc-CceEEEecC
Confidence            578998 66677776    78999999999875   1 222221     2277888883155 4555554 446666988


Q ss_pred             CCCCccccceeec---cc-CCcceeEEEeccCCCEEEEEeCC--------CeEEEEECCCCCeeeeeccCccEEEEeecC
Q 009203          358 DAEDSWKPKALHR---NL-HSSAVMGVAGMQQKQIVLSAGAD--------KRIIGFDAGVGRADFKHQIESKCMSVLPNP  425 (540)
Q Consensus       358 ~~~~~~~~~~~~~---~~-~~~~v~~l~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  425 (540)
                      +++.    ..+..   .. .....+.+++.++|++.++....        |.|..++.. ++.......-.....++|+|
T Consensus        69 ~g~~----~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~  143 (246)
T PF08450_consen   69 TGKV----TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP  143 (246)
T ss_dssp             TTEE----EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET
T ss_pred             CCcE----EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC
Confidence            8763    22222   11 45678999999999977776543        568888888 66544444456678899999


Q ss_pred             CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc
Q 009203          426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ  505 (540)
Q Consensus       426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~  505 (540)
                      ++.  .++++-+..+.|..|++...............+....+..-.++++.+|++.++....+.|.+++.+   ++.+.
T Consensus       144 dg~--~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~---G~~~~  218 (246)
T PF08450_consen  144 DGK--TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD---GKLLR  218 (246)
T ss_dssp             TSS--EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT---SCEEE
T ss_pred             cch--heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC---ccEEE
Confidence            873  2456778889999999975433111111011222223457889999999998888888999999988   66777


Q ss_pred             cccccccceeEEEEc-CCCCEEEEE
Q 009203          506 SIRAHQKRVFKAVWH-YSHPLLISI  529 (540)
Q Consensus       506 ~~~~h~~~i~~l~~s-~~~~~l~s~  529 (540)
                      .+......+++++|. ++.+.|+..
T Consensus       219 ~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  219 EIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             EEcCCCCCEEEEEEECCCCCEEEEE
Confidence            666555589999994 665655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.13  E-value=7.9e-08  Score=89.22  Aligned_cols=223  Identities=12%  Similarity=0.049  Sum_probs=157.3

Q ss_pred             EecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC--CCc---ccceeEE-EEeCCCCCEEEEEecCCcEEEEe
Q 009203          282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK--PHV---KGIINSI-IFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       282 ~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~---~~~v~~~-~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      .+.||+.|+.     +..|.|.+||..+..-.+.-.-+...  ...   ..+..-+ .|++.+|++++..+. |...|.+
T Consensus       274 ~nsDGkrIvF-----q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~  347 (668)
T COG4946         274 ANSDGKRIVF-----QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMR  347 (668)
T ss_pred             cCCCCcEEEE-----ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEEC
Confidence            3668998888     58899999999875321111111110  000   0111112 256668999998886 7788887


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC-eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK-RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  434 (540)
                      ...+-.   ++    .++.+.|.-..+.-+++-++.|..|| .+-++|.++++.......-+.+.++..++++   .+++
T Consensus       348 ~~~~~~---iq----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dG---K~~v  417 (668)
T COG4946         348 PWDGYS---IQ----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDG---KKVV  417 (668)
T ss_pred             CCCCee---EE----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCC---cEEE
Confidence            776542   11    34667788888888888899999999 8999999998877777777888999999988   7899


Q ss_pred             EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC----cEEEEeccCCCCccccccccc
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP----VIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg----~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      ++.....+.++|+.++......       +...+-|+.++|||+++++|.+--+|    .|++||+..  ++... ....
T Consensus       418 vaNdr~el~vididngnv~~id-------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~--~Kiy~-vTT~  487 (668)
T COG4946         418 VANDRFELWVIDIDNGNVRLID-------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG--GKIYD-VTTP  487 (668)
T ss_pred             EEcCceEEEEEEecCCCeeEec-------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC--CeEEE-ecCC
Confidence            9999999999999998754421       23455799999999999999887665    689999996  33322 2222


Q ss_pred             ccceeEEEEcCCCCEEEEEE
Q 009203          511 QKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       511 ~~~i~~l~~s~~~~~l~s~~  530 (540)
                      .+-=.+-+|.|||++|.--+
T Consensus       488 ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         488 TAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cccccCcccCCCCcEEEEEe
Confidence            22235678899998775443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.11  E-value=1.6e-09  Score=94.75  Aligned_cols=257  Identities=18%  Similarity=0.235  Sum_probs=166.8

Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC--ceeEEeecCCC---------CcccceeEEEEeCC-CCC
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG--RACVTFLDDKP---------HVKGIINSIIFLPW-ENP  340 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~---------~~~~~v~~~~~~p~-~~~  340 (540)
                      ..+.|+++.|...|.+|++|    ...|.|.+|.-.....  .+.++.++++.         .....|..+.|... ...
T Consensus        25 ead~ItaVefd~tg~YlatG----DkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~  100 (460)
T COG5170          25 EADKITAVEFDETGLYLATG----DKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN  100 (460)
T ss_pred             ccceeeEEEeccccceEeec----CCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence            34568999999999999999    8889999997654321  11122233321         11235788888752 234


Q ss_pred             EEEEEecCCcEEEEecCCCCC-------------------c-------------------cccceeecccCCcceeEEEe
Q 009203          341 CFATGGSDHAVVLWSERDAED-------------------S-------------------WKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       341 ~l~s~~~dg~i~iwd~~~~~~-------------------~-------------------~~~~~~~~~~~~~~v~~l~~  382 (540)
                      .++..+.|.+|++|.+.....                   +                   ..+..+....|.-.|+++.|
T Consensus       101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~  180 (460)
T COG5170         101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF  180 (460)
T ss_pred             eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence            577778899999998865411                   0                   00111122457778899999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeee---ee------ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADF---KH------QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      +.|...++++ .|-.|.+|++.-....+   ..      ....-+.+..|+|..-+  .+.-.+..|.|++-|++.....
T Consensus       181 NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn--~fmYSsSkG~Ikl~DlRq~alc  257 (460)
T COG5170         181 NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN--VFMYSSSKGEIKLNDLRQSALC  257 (460)
T ss_pred             cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc--eEEEecCCCcEEehhhhhhhhc
Confidence            9888877765 56689999987532211   11      11234567778886532  5666777899999999843211


Q ss_pred             -----eeeeccc----cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc------------
Q 009203          454 -----IHAFGWK----QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK------------  512 (540)
Q Consensus       454 -----~~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~------------  512 (540)
                           .......    .-+.+-...|..+.|+++|+++++-+. -+|.|||++.. ..++.++..|..            
T Consensus       258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~-k~pikTi~~h~~l~~~l~d~YEnD  335 (460)
T COG5170         258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA-KNPIKTIPMHCDLMDELNDVYEND  335 (460)
T ss_pred             cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc-cCCceeechHHHHHHHHHhhhhcc
Confidence                 1110000    012233457888999999999998754 67999999975 567777765532            


Q ss_pred             ce---eEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          513 RV---FKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       513 ~i---~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      .|   ..+.|+.|.+.+.+|+.....-|+
T Consensus       336 aifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         336 AIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             ceeeeEEEEecCCcccccccccccceeee
Confidence            23   357889899999999988877665

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.08  E-value=8.1e-08  Score=82.66  Aligned_cols=241  Identities=7%  Similarity=-0.055  Sum_probs=155.1

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      --+||.|+..|...+|...+.+....+..       .|...|.-+.=.-+ .-.+..+    +.|.++++.++..+....
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd-------~snn~v~~~~r~cd~~~~~~i~----sndht~k~~~~~~~s~~~  152 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCD-------VSNNDVTLVKRYCDLKFPLNIA----SNDHTGKTMVVSGDSNKF  152 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeec-------ccccchhhhhhhcccccceeec----cCCcceeEEEEecCcccc
Confidence            34789999999999999987654332211       22222221111111 1235555    789999999888653322


Q ss_pred             eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203          315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA  394 (540)
Q Consensus       315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  394 (540)
                      .+....      -.+.++.+++ ++.++++.+....|..|.+.....-  ...+......+.-.+..|+.....+|++..
T Consensus       153 ~~h~~~------~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey--~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q  223 (344)
T KOG4532|consen  153 AVHNQN------LTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY--IENIYEAPTSDHGFYNSFSENDLQFAVVFQ  223 (344)
T ss_pred             eeeccc------cceeeeEEcC-CCceEEEecCCCcceEEEeCCccce--eeeeEecccCCCceeeeeccCcceEEEEec
Confidence            222211      2378999999 9999999999999999999765421  111122224445577889999999999999


Q ss_pred             CCeEEEEECCCCCeee------eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcccc
Q 009203          395 DKRIIGFDAGVGRADF------KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQS  468 (540)
Q Consensus       395 dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~  468 (540)
                      ||++.|||++......      ...+.+.+..+.|++.+.. .+|+..-.-+.+.+.|+++........-.......|..
T Consensus       224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l-DLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~t  302 (344)
T KOG4532|consen  224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL-DLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNT  302 (344)
T ss_pred             CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc-eEEEEecCcceEEEEEcccCceeeEEecCccccccccc
Confidence            9999999999744321      1235577788888886654 45555556688999999988754443322223333433


Q ss_pred             -CeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          469 -ALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       469 -~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                       .|..-.|+.++.-+.+.+++. +.=|++..
T Consensus       303 q~ifgt~f~~~n~s~~v~~e~~-~ae~ni~s  332 (344)
T KOG4532|consen  303 QHIFGTNFNNENESNDVKNELQ-GAEYNILS  332 (344)
T ss_pred             cccccccccCCCcccccccchh-hheeeccc
Confidence             377888888777766665543 45566654

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.07  E-value=2.7e-07  Score=80.85  Aligned_cols=248  Identities=13%  Similarity=0.125  Sum_probs=132.1

Q ss_pred             EEEecCCCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEe
Q 009203          229 LSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLN  306 (540)
Q Consensus       229 l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd  306 (540)
                      ++.++ +|++||.- .|..|.|=...+.=  .+.+.....    ..+ -.=..++|+||+..||.+    ...|+|++||
T Consensus         3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpk----D~~-PQWRkl~WSpD~tlLa~a----~S~G~i~vfd   71 (282)
T PF15492_consen    3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPK----DPN-PQWRKLAWSPDCTLLAYA----ESTGTIRVFD   71 (282)
T ss_pred             eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCC----CCC-chheEEEECCCCcEEEEE----cCCCeEEEEe
Confidence            45566 48877775 45666665544321  111111111    111 123579999999999999    9999999999


Q ss_pred             cCCCCCceeEEeecC---CCCcccceeEEEEeCCC-----CCEEEEEecCCcEEEEecCCC--CCccccceeec-ccCCc
Q 009203          307 LNKTKGRACVTFLDD---KPHVKGIINSIIFLPWE-----NPCFATGGSDHAVVLWSERDA--EDSWKPKALHR-NLHSS  375 (540)
Q Consensus       307 ~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~-----~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~-~~~~~  375 (540)
                      +...   .+...-..   ...-...|.++.|.+..     ...|+.-..+|.++-|-+..+  +.-.....+.. ..+..
T Consensus        72 l~g~---~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~  148 (282)
T PF15492_consen   72 LMGS---ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH  148 (282)
T ss_pred             cccc---eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence            9843   22211111   01123457777776522     224555567788887776432  11111122222 22467


Q ss_pred             ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCe------EEEEECCC
Q 009203          376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ------LRLYDIRL  449 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~------v~i~d~~~  449 (540)
                      .|.++.|+|..++|++|+....      ..+.   .........+...-.+.+. ...++...|+.      -.+|.+-+
T Consensus       149 Gi~~~vy~p~h~LLlVgG~~~~------~~~~---s~a~~~GLtaWRiL~~~Py-yk~v~~~~~~~~~~~~~~~~~~~~~  218 (282)
T PF15492_consen  149 GINSAVYHPKHRLLLVGGCEQN------QDGM---SKASSCGLTAWRILSDSPY-YKQVTSSEDDITASSKRRGLLRIPS  218 (282)
T ss_pred             ceeEEEEcCCCCEEEEeccCCC------CCcc---ccccccCceEEEEcCCCCc-EEEccccCccccccccccceeeccc
Confidence            8999999999898888775322      0000   0001111122211111111 11122222211      12222221


Q ss_pred             CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203          450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  509 (540)
                      ..    .+   .........|..|..||||..||+...+|.|.+|++.+  ......+..
T Consensus       219 ~~----~f---s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs--L~~~~~W~~  269 (282)
T PF15492_consen  219 FK----FF---SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS--LRLQRSWKQ  269 (282)
T ss_pred             ee----ee---eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc--chhhcccch
Confidence            11    00   01122356799999999999999999999999999997  555555543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.05  E-value=4.5e-08  Score=84.21  Aligned_cols=219  Identities=13%  Similarity=0.102  Sum_probs=144.2

Q ss_pred             CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCccccee---EEEEeCCCCCEEEEEecCCcEEEEecCCCCCc
Q 009203          286 GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIIN---SIIFLPWENPCFATGGSDHAVVLWSERDAEDS  362 (540)
Q Consensus       286 ~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  362 (540)
                      ..+|+.|    +..|...+|...+.+.  .......   +...|.   ..+-   ..-.+..++.|.++++.++..+.. 
T Consensus        84 c~~la~g----G~~g~fd~~~~~tn~~--h~~~cd~---snn~v~~~~r~cd---~~~~~~i~sndht~k~~~~~~~s~-  150 (344)
T KOG4532|consen   84 CVTLADG----GASGQFDLFACNTNDG--HLYQCDV---SNNDVTLVKRYCD---LKFPLNIASNDHTGKTMVVSGDSN-  150 (344)
T ss_pred             ccEEEec----cccceeeeecccCccc--ceeeecc---cccchhhhhhhcc---cccceeeccCCcceeEEEEecCcc-
Confidence            4478888    8999999999987633  2222221   111111   1111   223466778899999999887653 


Q ss_pred             cccceeecccCCc--ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-e---eeeccCccEEEEeecCCCCCceEEEEE
Q 009203          363 WKPKALHRNLHSS--AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-D---FKHQIESKCMSVLPNPCDFNLFMVQTG  436 (540)
Q Consensus       363 ~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l~~~  436 (540)
                        ...+    |..  .+.++++++|++++++.+....|..|.+..... +   ..-.......+..|+..+   ..+|++
T Consensus       151 --~~~~----h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~---~~FAv~  221 (344)
T KOG4532|consen  151 --KFAV----HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND---LQFAVV  221 (344)
T ss_pred             --ccee----eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc---ceEEEE
Confidence              1122    322  388999999999999999999999999876433 1   122233445566666655   689999


Q ss_pred             cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC--EEEEEeCCCcEEEEeccCCCCcccccc-------
Q 009203          437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL--YITSGSADPVIHLFDIRYSANKPSQSI-------  507 (540)
Q Consensus       437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~sg~~dg~i~iwd~~~~~~~~~~~~-------  507 (540)
                      ..||++.|||++....+.....  .....|.+.+..+.|++.|.  +|+..-.-+.+.+.|+++.  +-...+       
T Consensus       222 ~Qdg~~~I~DVR~~~tpm~~~s--strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~--~~~q~I~i~~d~~  297 (344)
T KOG4532|consen  222 FQDGTCAIYDVRNMATPMAEIS--STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY--VNHQVIVIPDDVE  297 (344)
T ss_pred             ecCCcEEEEEecccccchhhhc--ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC--ceeeEEecCcccc
Confidence            9999999999998776554432  23456899999999998664  4555556688999999973  222211       


Q ss_pred             ccccc-ceeEEEEcCCCCEEEEEE
Q 009203          508 RAHQK-RVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       508 ~~h~~-~i~~l~~s~~~~~l~s~~  530 (540)
                      ..|.. -|..-.|+.++.-+.+.+
T Consensus       298 ~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  298 RKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             ccccccccccccccCCCccccccc
Confidence            12333 377788887776554444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.05  E-value=1.4e-07  Score=92.44  Aligned_cols=262  Identities=11%  Similarity=0.057  Sum_probs=153.2

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      +..+++++.+|.|..+|..+++..........     .   .....  .++..++++    +.++.+..+|..+++.   
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-----~---~~~p~--v~~~~v~v~----~~~g~l~ald~~tG~~---  127 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-----L---SGGVG--ADGGLVFVG----TEKGEVIALDAEDGKE---  127 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-----c---ccceE--EcCCEEEEE----cCCCEEEEEECCCCcE---
Confidence            34677778889999999998887665532211     0   11222  246677777    8899999999988743   


Q ss_pred             EEeecCCCCcccceeE-EEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203          316 VTFLDDKPHVKGIINS-IIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA  394 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  394 (540)
                      +-....    .+.+.+ ...   .+..++.++.+|.|+.||..+++..|+..............+....  +..++.+..
T Consensus       128 ~W~~~~----~~~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~  198 (377)
T TIGR03300       128 LWRAKL----SSEVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFA  198 (377)
T ss_pred             eeeecc----CceeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECC
Confidence            211111    112221 122   2346777788999999999999876654321100000000111121  346778888


Q ss_pred             CCeEEEEECCCCCeeeeeccCcc--------EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc
Q 009203          395 DKRIIGFDAGVGRADFKHQIESK--------CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES  466 (540)
Q Consensus       395 dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  466 (540)
                      +|.+..+|.++|+.+........        ...+...|.-.. ..+++++.+|.+..||..+++.....     ...  
T Consensus       199 ~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~a~d~~tG~~~W~~-----~~~--  270 (377)
T TIGR03300       199 GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG-GQVYAVSYQGRVAALDLRSGRVLWKR-----DAS--  270 (377)
T ss_pred             CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC-CEEEEEEcCCEEEEEECCCCcEEEee-----ccC--
Confidence            99999999999987654332110        000111111001 36777788999999999987643321     111  


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-ccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          467 QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       467 ~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                        .......  ++..++.++.||.|+.+|..+  ++.+-..... .........  .+..|++++.||.|++||
T Consensus       271 --~~~~p~~--~~~~vyv~~~~G~l~~~d~~t--G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       271 --SYQGPAV--DDNRLYVTDADGVVVALDRRS--GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             --CccCceE--eCCEEEEECCCCeEEEEECCC--CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence              1112222  567788888999999999987  4444333211 111222222  456888899999999887

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.04  E-value=4.8e-07  Score=96.79  Aligned_cols=245  Identities=11%  Similarity=0.145  Sum_probs=158.4

Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEE----ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL----NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD  348 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw----d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  348 (540)
                      ..+.|.++.|.++...++.+    ..+|.|.+.    +..+.. .+.+..+.      +.|.+++|+| |+.+|+..+.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~----~~~Gdi~~~~~~~~~~~~~-~E~VG~vd------~GI~a~~WSP-D~Ella~vT~~  141 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIA----LASGDIILVREDPDPDEDE-IEIVGSVD------SGILAASWSP-DEELLALVTGE  141 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEE----ECCceEEEEEccCCCCCce-eEEEEEEc------CcEEEEEECC-CcCEEEEEeCC
Confidence            34678999999999988888    889999999    555431 23333333      4599999999 99999999988


Q ss_pred             CcEEEEecCC-------------C--CC---ccccc-------------------eee------cccCCcceeEEEeccC
Q 009203          349 HAVVLWSERD-------------A--ED---SWKPK-------------------ALH------RNLHSSAVMGVAGMQQ  385 (540)
Q Consensus       349 g~i~iwd~~~-------------~--~~---~~~~~-------------------~~~------~~~~~~~v~~l~~s~~  385 (540)
                      +++.+.+-.-             +  +.   -|..+                   ...      .. ..+.-..++|-.|
T Consensus       142 ~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGD  220 (928)
T PF04762_consen  142 GNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGD  220 (928)
T ss_pred             CEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCC
Confidence            8887643110             0  00   00000                   000      00 2334567899999


Q ss_pred             CCEEEEEeC---C---CeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcC---CCeEEEEECCCCcceee
Q 009203          386 KQIVLSAGA---D---KRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTP---GRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       386 ~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~  455 (540)
                      |.++++.+.   .   +.+++|+-+ |....... ..+--.+++|-|.+   .++|+...   ...|.+|.-+..+.--.
T Consensus       221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG---~lIA~~q~~~~~~~VvFfErNGLrhgeF  296 (928)
T PF04762_consen  221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG---NLIASSQRLPDRHDVVFFERNGLRHGEF  296 (928)
T ss_pred             CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC---CEEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence            999998775   2   479999976 55433322 23334578899988   57777643   35677787664432221


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-ccceeEEEEcCCCC-EEEEEEcCC
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QKRVFKAVWHYSHP-LLISISSDL  533 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~-~l~s~~~dg  533 (540)
                      .+    .+......|..+.|++|+..||..-.|. |.+|-..+--...-..+... ...+..+.|+|... .|...+.+|
T Consensus       297 ~l----~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g  371 (928)
T PF04762_consen  297 TL----RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG  371 (928)
T ss_pred             ec----CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCC
Confidence            11    2224456789999999999999987666 99999887322233333322 23455699999654 566666667


Q ss_pred             cEEEEe
Q 009203          534 NIGLHK  539 (540)
Q Consensus       534 ~v~iw~  539 (540)
                      .+..++
T Consensus       372 ~~~~~~  377 (928)
T PF04762_consen  372 QYEIYD  377 (928)
T ss_pred             cEEEEE
Confidence            776654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=3.2e-07  Score=89.98  Aligned_cols=193  Identities=7%  Similarity=-0.002  Sum_probs=116.6

Q ss_pred             CceeEEEecCCCe-EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEE-EecC--CcE
Q 009203          276 WPEDIAWHPQGNS-LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFAT-GGSD--HAV  351 (540)
Q Consensus       276 ~V~~~~~~~~~~~-l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~d--g~i  351 (540)
                      .+....|+|||+. ++..... +.+..|.++|+.++.. ..+...      .+......|+| |+..++. .+.+  ..|
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~-~~~~~Iyv~dl~tg~~-~~lt~~------~g~~~~~~~SP-DG~~la~~~~~~g~~~I  259 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYG-ERKPTLYKYNLYTGKK-EKIASS------QGMLVVSDVSK-DGSKLLLTMAPKGQPDI  259 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEcc-CCCCEEEEEECCCCcE-EEEecC------CCcEEeeEECC-CCCEEEEEEccCCCcEE
Confidence            4668999999985 5543221 2356899999987632 222221      24466788999 8876654 3333  468


Q ss_pred             EEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-C--eEEEEECCCCCeeeeeccCccEEEEeecCCCC
Q 009203          352 VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-K--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDF  428 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (540)
                      +++|+.++..    ..+..  +........|+|||+.|+..+.. +  .|+++|+.+++..........  ...|+|++.
T Consensus       260 y~~dl~~g~~----~~LT~--~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~  331 (419)
T PRK04043        260 YLYDTNTKTL----TQITN--YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKN  331 (419)
T ss_pred             EEEECCCCcE----EEccc--CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCC
Confidence            8889887752    33322  22223456899999988877642 2  688889987776333222221  247899884


Q ss_pred             CceEEEEEcCC---------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-C--cEEEEec
Q 009203          429 NLFMVQTGTPG---------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-P--VIHLFDI  496 (540)
Q Consensus       429 ~~~~l~~~~~d---------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-g--~i~iwd~  496 (540)
                         .++..+..         ..|.+.|+.++.....        ... .......|+|||+.|+....+ +  .+.+.++
T Consensus       332 ---~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L--------T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        332 ---YIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL--------TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             ---EEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC--------CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence               44433322         3688889877653221        111 122357899999988765543 2  3556666


Q ss_pred             c
Q 009203          497 R  497 (540)
Q Consensus       497 ~  497 (540)
                      +
T Consensus       400 ~  400 (419)
T PRK04043        400 N  400 (419)
T ss_pred             C
Confidence            5

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.01  E-value=6.1e-07  Score=81.19  Aligned_cols=249  Identities=13%  Similarity=0.125  Sum_probs=149.2

Q ss_pred             EEEEEecCCCcEEEEEeCCce-EEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEe-ecCCCCCeEEE
Q 009203          227 RSLSLNPVNEQLFVTSALDGV-IRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAH-TADSGDSQISV  304 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~-~~~~~d~~i~v  304 (540)
                      ..++.+|+.+..++.+-.-|+ ..+||..+++....+.....-...||      -.|++||++|++.= ......|.|-|
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgV   81 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGV   81 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEE
Confidence            457778865777777777765 57899988887665544333222344      78999999999861 11245689999


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec------------------CCcEEEEecCCCCCccccc
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS------------------DHAVVLWSERDAEDSWKPK  366 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~  366 (540)
                      ||...+  ...+..+..   +.-....+.+.| ++..|+.+-.                  +-++...|..+++.+.+..
T Consensus        82 yd~~~~--~~ri~E~~s---~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~  155 (305)
T PF07433_consen   82 YDAARG--YRRIGEFPS---HGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE  155 (305)
T ss_pred             EECcCC--cEEEeEecC---CCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence            999943  344545544   233356788999 8877776521                  2334455555655421111


Q ss_pred             eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203          367 ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD  446 (540)
Q Consensus       367 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d  446 (540)
                       +....|...|..+++.++|..++..-..|.-       ..                     ..-+++.-..++.+..++
T Consensus       156 -Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~-------~~---------------------~~PLva~~~~g~~~~~~~  206 (305)
T PF07433_consen  156 -LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP-------GD---------------------APPLVALHRRGGALRLLP  206 (305)
T ss_pred             -cCccccccceeeEEecCCCcEEEEEecCCCC-------Cc---------------------cCCeEEEEcCCCcceecc
Confidence             1113356667777777766555443332210       00                     002444444444455555


Q ss_pred             CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCE
Q 009203          447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPL  525 (540)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~  525 (540)
                      .....           ...-.+.+-+|+++++|.++++.+ ..|.+.+||..+  +..+....-.  .+..++-.+++ +
T Consensus       207 ~p~~~-----------~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t--g~~~~~~~l~--D~cGva~~~~~-f  270 (305)
T PF07433_consen  207 APEEQ-----------WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT--GRLLGSVPLP--DACGVAPTDDG-F  270 (305)
T ss_pred             CChHH-----------HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC--CCEeeccccC--ceeeeeecCCc-e
Confidence            44222           122356889999999998886655 567899999998  6666555433  36677777666 5


Q ss_pred             EEEEEcC
Q 009203          526 LISISSD  532 (540)
Q Consensus       526 l~s~~~d  532 (540)
                      ++|.+..
T Consensus       271 ~~ssG~G  277 (305)
T PF07433_consen  271 LVSSGQG  277 (305)
T ss_pred             EEeCCCc
Confidence            6665543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.00  E-value=7.5e-09  Score=94.07  Aligned_cols=153  Identities=16%  Similarity=0.084  Sum_probs=105.3

Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCe----eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA----DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      ...+..++.+++++++..+....+++++....    +..........++.+..++......-..+....+.+|....+..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            34455677888888888888877777765432    22233334444555554443222222334445556665554222


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc-cccccceeEEEEcCCCCEEEEEEc
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                              ...-+|-+.++.++|+||+++|+++..|..|+|-.+..  .-.+..+ -||..-|..++.-++ ..|+|+|.
T Consensus       145 --------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa--~f~IesfclGH~eFVS~isl~~~-~~LlS~sG  213 (390)
T KOG3914|consen  145 --------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA--TFVIESFCLGHKEFVSTISLTDN-YLLLSGSG  213 (390)
T ss_pred             --------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc--ccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence                    13457999999999999999999999999999988875  3344444 479999999999765 45899999


Q ss_pred             CCcEEEEeC
Q 009203          532 DLNIGLHKI  540 (540)
Q Consensus       532 dg~v~iw~l  540 (540)
                      |++|++||+
T Consensus       214 D~tlr~Wd~  222 (390)
T KOG3914|consen  214 DKTLRLWDI  222 (390)
T ss_pred             CCcEEEEec
Confidence            999999996

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=5.7e-08  Score=95.40  Aligned_cols=246  Identities=12%  Similarity=0.090  Sum_probs=166.1

Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-----------CCE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-----------NPC  341 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----------~~~  341 (540)
                      |...-.++.|+|.| +||.|     ....|.+-|..+-   +.++.++   +|...|+.+.|.|..           .-+
T Consensus        14 ~~sN~~A~Dw~~~G-LiAyg-----shslV~VVDs~s~---q~iqsie---~h~s~V~~VrWap~~~p~~llS~~~~~ll   81 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYG-----SHSLVSVVDSRSL---QLIQSIE---LHQSAVTSVRWAPAPSPRDLLSPSSSQLL   81 (1062)
T ss_pred             CcccccccccCccc-eEEEe-----cCceEEEEehhhh---hhhhccc---cCccceeEEEeccCCCchhccCcccccee
Confidence            33446688999877 66665     5667888888764   3344444   577889999998731           235


Q ss_pred             EEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc---CC-CEEEEEeCCCeEEEEECCCCCeeeeeccCcc
Q 009203          342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ---QK-QIVLSAGADKRIIGFDAGVGRADFKHQIESK  417 (540)
Q Consensus       342 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  417 (540)
                      |+++...|.|.+||...+..     ......|..++..++|-+   +. .+|++-....++.+|+..+|+.+..+.....
T Consensus        82 iAsaD~~GrIil~d~~~~s~-----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~  156 (1062)
T KOG1912|consen   82 IASADISGRIILVDFVLASV-----INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE  156 (1062)
T ss_pred             EEeccccCcEEEEEehhhhh-----hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence            77778889999999998763     223345888999999965   33 5677777788999999999999988877766


Q ss_pred             EEE-EeecCCCCCceEEEEEcCCCeEEEEECCCCc---ceeeeecccccc-------------CccccC---------eE
Q 009203          418 CMS-VLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ---TEIHAFGWKQES-------------SESQSA---------LI  471 (540)
Q Consensus       418 ~~~-~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~---~~~~~~~~~~~~-------------~~~~~~---------v~  471 (540)
                      +.+ +.++|.+..  .+..-+..|.|.+-+.-...   .+.+.+.+....             ..+...         ..
T Consensus       157 iLs~f~~DPfd~r--h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a  234 (1062)
T KOG1912|consen  157 ILSCFRVDPFDSR--HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA  234 (1062)
T ss_pred             ceeeeeeCCCCcc--eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence            664 889998764  44444455666665543211   111111111000             001111         11


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC--EEEEEEcCCcEEEEe
Q 009203          472 NQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP--LLISISSDLNIGLHK  539 (540)
Q Consensus       472 ~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~--~l~s~~~dg~v~iw~  539 (540)
                      .++|+|.-+-++-......+.|+|++-  ..++....-..+.+.-+.|-|+++  .|++.-.||.+.||.
T Consensus       235 ~faf~p~~rn~lfi~~prellv~dle~--~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  235 QFAFSPHWRNILFITFPRELLVFDLEY--ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             hhhcChhhhceEEEEeccceEEEcchh--hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence            247788766555555677899999997  667777766666677788888774  799999999999984

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=7.6e-10  Score=109.62  Aligned_cols=225  Identities=10%  Similarity=0.030  Sum_probs=152.5

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      .++..|+...+|++|+- +.++|+.|+..|.|+++++.+|......        .+|..+|+.+.=+-+|..+++.+.  
T Consensus      1095 ~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~--------ncH~SavT~vePs~dgs~~Ltsss-- 1163 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESV--------NCHQSAVTLVEPSVDGSTQLTSSS-- 1163 (1516)
T ss_pred             hhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccc--------cccccccccccccCCcceeeeecc--
Confidence            45788999999999999 4899999999999999999998765555        589999999999999997776521  


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      ...--..+|++.+.  ......+.       .-.++.|+. ....-+.|+......+||+.++....+...- ..+....
T Consensus      1164 ~S~PlsaLW~~~s~--~~~~Hsf~-------ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~-~~~~~y~ 1232 (1516)
T KOG1832|consen 1164 SSSPLSALWDASST--GGPRHSFD-------EDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTD-TVTSSYS 1232 (1516)
T ss_pred             ccCchHHHhccccc--cCcccccc-------ccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCc-chhhhhh
Confidence            23335789998753  23344443       356888986 4444455555567899999998752211100 0112223


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      -++..|+|+..+++   .||.  +||.+..+.+..+..-..-..-.|+|.+   .-++..+     .|||+++.......
T Consensus      1233 ~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g---~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSG---NEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred             ccccccCCCcceEe---eCce--eeeeccHHHHhhhhhheecccccccCCC---ceEEeec-----hhhhhHHHHHHhcC
Confidence            37788999988887   4664  6999987666554433344455688877   4455543     48999987643321


Q ss_pred             eccccccCccccCeEEEEEcCCCCEEEEE
Q 009203          457 FGWKQESSESQSALINQSWSPDGLYITSG  485 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg  485 (540)
                      ..         -.-+.+.|+..|..+...
T Consensus      1300 P~---------Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1300 PS---------LDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             cc---------ccceEEEeccCccchhhh
Confidence            11         123567888888766543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.96  E-value=1.4e-06  Score=76.49  Aligned_cols=231  Identities=16%  Similarity=0.125  Sum_probs=130.0

Q ss_pred             EEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC
Q 009203          280 IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA  359 (540)
Q Consensus       280 ~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  359 (540)
                      ++.+.+|+.||+.     .|..|-|-..+..-. .++............-.-++|+| |+.+||.+...|+|++||+...
T Consensus         3 ~~~~~~Gk~lAi~-----qd~~iEiRsa~Ddf~-si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~   75 (282)
T PF15492_consen    3 LALSSDGKLLAIL-----QDQCIEIRSAKDDFS-SIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGS   75 (282)
T ss_pred             eeecCCCcEEEEE-----eccEEEEEeccCCch-heeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccc
Confidence            5677899999985     888888876654311 11111111111123467899999 9999999999999999999875


Q ss_pred             CCccccceeec-ccCCcceeEEEeccC------CCEEEEEeCCCeEEEEECCCC--C---eeeee----ccCccEEEEee
Q 009203          360 EDSWKPKALHR-NLHSSAVMGVAGMQQ------KQIVLSAGADKRIIGFDAGVG--R---ADFKH----QIESKCMSVLP  423 (540)
Q Consensus       360 ~~~~~~~~~~~-~~~~~~v~~l~~s~~------~~~l~~~~~dg~i~iwd~~~~--~---~~~~~----~~~~~~~~~~~  423 (540)
                      ....-...... ..-...|.++.|.+-      ...|++....|.++-|-+..+  +   ....+    .....+.++.+
T Consensus        76 ~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy  155 (282)
T PF15492_consen   76 ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY  155 (282)
T ss_pred             eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence            43110010000 113356777777442      235667777888877765332  1   11221    23457788888


Q ss_pred             cCCCCCceEEEEEcC-CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE--EEEEeCCCc------EEEE
Q 009203          424 NPCDFNLFMVQTGTP-GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY--ITSGSADPV------IHLF  494 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~--l~sg~~dg~------i~iw  494 (540)
                      +|..   ++|++|+. ...-..+                  ......+++-..-.+..+  .++...|+.      ..+|
T Consensus       156 ~p~h---~LLlVgG~~~~~~~~s------------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~  214 (282)
T PF15492_consen  156 HPKH---RLLLVGGCEQNQDGMS------------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLL  214 (282)
T ss_pred             cCCC---CEEEEeccCCCCCccc------------------cccccCceEEEEcCCCCcEEEccccCcccccccccccee
Confidence            8876   45544443 3210000                  011122333222222221  122222221      1334


Q ss_pred             eccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          495 DIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       495 d~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .+-+  .+...........|..|..||||..||+...+|.|.+|+|
T Consensus       215 ~~~~--~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  215 RIPS--FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             eccc--eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence            3332  1221122234568999999999999999999999999986

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=5.3e-07  Score=88.47  Aligned_cols=203  Identities=11%  Similarity=-0.007  Sum_probs=121.7

Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCE-EEEEecC---CcEEEEecCCCCCccccceeecccCC
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC-FATGGSD---HAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                      ...|.+-|.+..   ........     +......|+| +++. ++..+.+   ..|+++|+.+++.    ..+..  ..
T Consensus       168 ~~~l~~~d~dg~---~~~~~~~~-----~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~----~~lt~--~~  232 (419)
T PRK04043        168 KSNIVLADYTLT---YQKVIVKG-----GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKK----EKIAS--SQ  232 (419)
T ss_pred             cceEEEECCCCC---ceeEEccC-----CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcE----EEEec--CC
Confidence            446666666532   11222221     3577899999 8874 5544433   5699999988863    33332  34


Q ss_pred             cceeEEEeccCCCEEEEEeC---CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC--eEEEEECCC
Q 009203          375 SAVMGVAGMQQKQIVLSAGA---DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR--QLRLYDIRL  449 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~  449 (540)
                      +......|+|||+.++....   +..|.++|+.++................|+|++..  ++++....+  .|.++|+.+
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~--I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKR--IVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCE--EEEEECCCCCceEEEEECCC
Confidence            45667889999987765432   35688889887765443333333445679998842  333333333  688888877


Q ss_pred             CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---------CcEEEEeccCCCCcccccccccccceeEEEEc
Q 009203          450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---------PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH  520 (540)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s  520 (540)
                      ++......      .+.    ....|||||++|+..+..         ..|.+.|+..+.   ...+... .......|+
T Consensus       311 g~~~rlt~------~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~-~~~~~p~~S  376 (419)
T PRK04043        311 GSVEQVVF------HGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN-GVNQFPRFS  376 (419)
T ss_pred             CCeEeCcc------CCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC-CCcCCeEEC
Confidence            66422211      111    124899999998866543         367888887632   2233322 223458899


Q ss_pred             CCCCEEEEEEcC
Q 009203          521 YSHPLLISISSD  532 (540)
Q Consensus       521 ~~~~~l~s~~~d  532 (540)
                      |||+.|+..+.+
T Consensus       377 PDG~~I~f~~~~  388 (419)
T PRK04043        377 SDGGSIMFIKYL  388 (419)
T ss_pred             CCCCEEEEEEcc
Confidence            999977665543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.95  E-value=6.8e-07  Score=97.49  Aligned_cols=215  Identities=13%  Similarity=0.138  Sum_probs=134.6

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccC--CCC-------CCCCceeEEEecC-CCeEEEEee
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL--SPK-------HRRWPEDIAWHPQ-GNSLFSAHT  294 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~--~~~-------h~~~V~~~~~~~~-~~~l~s~~~  294 (540)
                      .-..|+++++++.++++-.....|+++|..++. +.++.......  ..+       .......++|+|+ +.++++.  
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad--  701 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM--  701 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE--
Confidence            358899999633344544556789999987643 22332110000  000       0123468999994 5555665  


Q ss_pred             cCCCCCeEEEEecCCCCCceeEEeecCCC------------CcccceeEEEEeCCCCC-EEEEEecCCcEEEEecCCCCC
Q 009203          295 ADSGDSQISVLNLNKTKGRACVTFLDDKP------------HVKGIINSIIFLPWENP-CFATGGSDHAVVLWSERDAED  361 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~  361 (540)
                        ..++.|++||..++.    +..+.+.+            ..-.....|+|+| ++. ++++.+.++.|++||+.++..
T Consensus       702 --~~~~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~  774 (1057)
T PLN02919        702 --AGQHQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGS  774 (1057)
T ss_pred             --CCCCeEEEEECCCCe----EEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcE
Confidence              788999999987652    11111100            0112466899999 776 556667779999999987642


Q ss_pred             cccc-------ceeecc---------cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC----------
Q 009203          362 SWKP-------KALHRN---------LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE----------  415 (540)
Q Consensus       362 ~~~~-------~~~~~~---------~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------  415 (540)
                      ....       ..+...         .......+++++++|+++++.+.++.|++||..++.........          
T Consensus       775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~  854 (1057)
T PLN02919        775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL  854 (1057)
T ss_pred             EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence            1000       000000         01123468999999999999999999999999877654322111          


Q ss_pred             ----ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          416 ----SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       416 ----~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                          .....+++++++   .++++.+.++.|++||+.++..
T Consensus       855 ~a~l~~P~GIavd~dG---~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        855 KAQLSEPAGLALGENG---RLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ccccCCceEEEEeCCC---CEEEEECCCCEEEEEECCCCcc
Confidence                245677888876   5788888999999999988654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=3.9e-09  Score=99.40  Aligned_cols=206  Identities=15%  Similarity=0.165  Sum_probs=135.6

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGG  346 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  346 (540)
                      .||...|..++--.+.+-++++    +.|.+|++|.+.....    ..|.-+..   .|+.+|.++.|.. +.+.+++  
T Consensus       732 ~GH~~~iRai~AidNENSFiSA----SkDKTVKLWSik~EgD~~~tsaCQfTY~---aHkk~i~~igfL~-~lr~i~S--  801 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISA----SKDKTVKLWSIKPEGDEIGTSACQFTYQ---AHKKPIHDIGFLA-DLRSIAS--  801 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeec----cCCceEEEEEeccccCccccceeeeEhh---hccCcccceeeee-ccceeee--
Confidence            6999999998877778888999    9999999999875321    11333333   3778899999988 7666665  


Q ss_pred             cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEE-EeCCCeEEEEECCCCCeeeeec------cCccEE
Q 009203          347 SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLS-AGADKRIIGFDAGVGRADFKHQ------IESKCM  419 (540)
Q Consensus       347 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~------~~~~~~  419 (540)
                      .||.|.+||.--+..+.+.......+..+.|.|+.-- +...++. ++...+|+++|.+.+.-.....      ......
T Consensus       802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             ccCcceeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence            4789999999877753322222222333444444321 3344444 4778899999999876543322      224556


Q ss_pred             EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEE-EeccC
Q 009203          420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHL-FDIRY  498 (540)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~i-wd~~~  498 (540)
                      +++..+.+   .+++++-.+|+|.+.|.+++..... +      .........++ .|..+.|+....|.++.+ |..-.
T Consensus       881 ~iaVa~~G---N~lAa~LSnGci~~LDaR~G~vINs-w------rpmecdllqla-apsdq~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  881 AIAVADKG---NKLAAALSNGCIAILDARNGKVINS-W------RPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             EEEeccCc---chhhHHhcCCcEEEEecCCCceecc-C------Ccccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence            77777766   6899999999999999998874221 1      11111112222 355667777777888888 76654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.92  E-value=2.8e-08  Score=90.41  Aligned_cols=168  Identities=14%  Similarity=0.151  Sum_probs=108.7

Q ss_pred             eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203          226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL  305 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw  305 (540)
                      +..+.++| ++++||.+..+....++++........+....     .-...-+++.|..+......+-. .+....+.+|
T Consensus        65 ~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-----~v~~~~~ai~~~~~~~sv~v~dk-agD~~~~di~  137 (390)
T KOG3914|consen   65 PALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-----CVPKRPTAISFIREDTSVLVADK-AGDVYSFDIL  137 (390)
T ss_pred             ccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEe-----ecccCcceeeeeeccceEEEEee-cCCceeeeee
Confidence            34445566 58888888777777777766544312221111     11122345555555554444300 0445555666


Q ss_pred             ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203          306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ  385 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  385 (540)
                      ....+   .+...+    +|-..++.++|+| |+.+|+++..|..|++-.......    ..-...||...|..++..+ 
T Consensus       138 s~~~~---~~~~~l----GhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~----IesfclGH~eFVS~isl~~-  204 (390)
T KOG3914|consen  138 SADSG---RCEPIL----GHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFV----IESFCLGHKEFVSTISLTD-  204 (390)
T ss_pred             ccccc---Ccchhh----hhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccc----hhhhccccHhheeeeeecc-
Confidence            55543   222222    3678899999999 999999999999999977765432    1122367999999999985 


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeeec
Q 009203          386 KQIVLSAGADKRIIGFDAGVGRADFKHQ  413 (540)
Q Consensus       386 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~  413 (540)
                      ++.|++++.|++|++||+++|+.+....
T Consensus       205 ~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  205 NYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CceeeecCCCCcEEEEecccCCcccccc
Confidence            5679999999999999999999875433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=5.5e-08  Score=89.66  Aligned_cols=255  Identities=13%  Similarity=0.142  Sum_probs=172.3

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC-C
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG-D  299 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~-d  299 (540)
                      -|.+.|+.+.-+-  ..++.+++.||.++.|.-..-.. ..+...+    ..|...|.+++.+-+|..+.+.    +. |
T Consensus         7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isG-vEfVKhF----raHL~~I~sl~~S~dg~L~~Sv----~d~D   75 (558)
T KOG0882|consen    7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISG-VEFVKHF----RAHLGVILSLAVSYDGWLFRSV----EDPD   75 (558)
T ss_pred             cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccc-eeehhhh----HHHHHHHHhhhccccceeEeec----cCcc
Confidence            5888888888774  67999999999999998654221 2333322    3677788899999999999997    56 9


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC--CEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN--PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      ..++++|+.+-.....+... ..   .+.+ ++..++.+.  .+-++.-.++.+.++|-....+   ........|..+|
T Consensus        76 hs~KvfDvEn~DminmiKL~-~l---Pg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~---q~~~fkklH~sPV  147 (558)
T KOG0882|consen   76 HSVKVFDVENFDMINMIKLV-DL---PGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC---QDGYFKKLHFSPV  147 (558)
T ss_pred             cceeEEEeeccchhhhcccc-cC---CCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcC---ccceecccccCce
Confidence            99999999864221112211 11   1111 222223111  2233345678999999887764   3344445699999


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCC------CCeeee----------eccCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGV------GRADFK----------HQIESKCMSVLPNPCDFNLFMVQTGTPGRQ  441 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  441 (540)
                      ..+.+++-+..+++....|.|.-|....      +.....          ........++.++|++   ..+.+-+.|..
T Consensus       148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g---~qistl~~Drk  224 (558)
T KOG0882|consen  148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG---AQISTLNPDRK  224 (558)
T ss_pred             EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc---CcccccCcccE
Confidence            9999999999999999999999999873      111111          1224566788999988   57788889999


Q ss_pred             EEEEECCCCcceeeee--------------cc-----------ccccCcccc-CeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          442 LRLYDIRLRQTEIHAF--------------GW-----------KQESSESQS-ALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       442 v~i~d~~~~~~~~~~~--------------~~-----------~~~~~~~~~-~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      |++++.+++......-              +.           ...+..|.. .-+.+.|+..|++|+.|+-=| |++.+
T Consensus       225 VR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin  303 (558)
T KOG0882|consen  225 VRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVIN  303 (558)
T ss_pred             EEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEE
Confidence            9999999865322110              00           011222332 345678999999999998766 88888


Q ss_pred             ccC
Q 009203          496 IRY  498 (540)
Q Consensus       496 ~~~  498 (540)
                      +.+
T Consensus       304 ~~t  306 (558)
T KOG0882|consen  304 LDT  306 (558)
T ss_pred             eec
Confidence            886

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.88  E-value=7.2e-08  Score=84.68  Aligned_cols=258  Identities=14%  Similarity=0.178  Sum_probs=162.4

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC-CcceeecccccCCCCC------------CCCceeEEEecCCC-
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG-SGASLLSTTDCLSPKH------------RRWPEDIAWHPQGN-  287 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~h------------~~~V~~~~~~~~~~-  287 (540)
                      ..+.|++|.|.. .|.+|++|...|.|.++.-.... +...+...+    .+|            ...|..+.|..++. 
T Consensus        25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teF----Qshe~EFDYLkSleieEKin~I~w~~~t~r   99 (460)
T COG5170          25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF----QSHELEFDYLKSLEIEEKINAIEWFDDTGR   99 (460)
T ss_pred             ccceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhh----cccccchhhhhhccHHHHhhheeeecCCCc
Confidence            346799999998 49999999999999999765432 222222221    233            24478899976544 


Q ss_pred             --eEEEEeecCCCCCeEEEEecCCCCC----------------c------------------eeEEeecC---CCCcccc
Q 009203          288 --SLFSAHTADSGDSQISVLNLNKTKG----------------R------------------ACVTFLDD---KPHVKGI  328 (540)
Q Consensus       288 --~l~s~~~~~~~d~~i~vwd~~~~~~----------------~------------------~~~~~~~~---~~~~~~~  328 (540)
                        +|++     +.|.+|++|.+....-                .                  ..+.....   ...|...
T Consensus       100 ~hFLls-----tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh  174 (460)
T COG5170         100 NHFLLS-----TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH  174 (460)
T ss_pred             ceEEEe-----cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence              4555     6999999998864300                0                  00000000   0145667


Q ss_pred             eeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC-----CcceeEEEeccC-CCEEEEEeCCCeEEEEE
Q 009203          329 INSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH-----SSAVMGVAGMQQ-KQIVLSAGADKRIIGFD  402 (540)
Q Consensus       329 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd  402 (540)
                      +.++.|+. +...++++. |-.|.+|++.-.....  ..+....|     ..-|++..|+|. ...+...+..|.|++-|
T Consensus       175 iNSiS~Ns-D~et~lSaD-dLrINLWnl~i~D~sF--nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D  250 (460)
T COG5170         175 INSISFNS-DKETLLSAD-DLRINLWNLEIIDGSF--NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND  250 (460)
T ss_pred             eeeeeecC-chheeeecc-ceeeeeccccccCCce--EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence            88999998 777777654 6789999887544321  22221222     345788899985 35566677889999999


Q ss_pred             CCCCCe------eeee-----------ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc
Q 009203          403 AGVGRA------DFKH-----------QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE  465 (540)
Q Consensus       403 ~~~~~~------~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  465 (540)
                      ++....      +...           ..-..+..+.|++.+   +++++-+ --+|++||++..+.++.+......+..
T Consensus       251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng---ryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG---RYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC---cEEEEec-cceEEEEecccccCCceeechHHHHHH
Confidence            984322      1111           112345677888877   6666543 468999999988777665532221110


Q ss_pred             ------cccCe---EEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          466 ------SQSAL---INQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       466 ------~~~~v---~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                            ....|   ..+.||-|.+.+.+|+..+..-||-..
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                  11122   347888888889999888777777644

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.87  E-value=3.5e-06  Score=83.03  Aligned_cols=266  Identities=9%  Similarity=0.029  Sum_probs=154.2

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCce-eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE-DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      ..++.++.+|.+..+|..+++...+.....         .+. +...  .+..++.+    ..++.|..+|..+++....
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---------~~~ssP~v--~~~~v~v~----~~~g~l~ald~~tG~~~W~  185 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG---------EALSRPVV--SDGLVLVH----TSNGMLQALNESDGAVKWT  185 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCCC---------ceecCCEE--ECCEEEEE----CCCCEEEEEEccCCCEeee
Confidence            356677789999999999998777664321         111 1111  23456666    7899999999998843222


Q ss_pred             EEeecCCCCcc-cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc-CC-cceeEEEecc--CCCEEE
Q 009203          316 VTFLDDKPHVK-GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL-HS-SAVMGVAGMQ--QKQIVL  390 (540)
Q Consensus       316 ~~~~~~~~~~~-~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~-~~v~~l~~s~--~~~~l~  390 (540)
                      ... .. +... ....+....   +..++.++.+|.+..+|..+++..|........+ +. .....+..+|  .+..++
T Consensus       186 ~~~-~~-~~~~~~~~~sP~v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy  260 (394)
T PRK11138        186 VNL-DV-PSLTLRGESAPATA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVY  260 (394)
T ss_pred             ecC-CC-CcccccCCCCCEEE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEE
Confidence            211 00 0000 000111111   2356677788999999999998776543221100 00 0011111122  356677


Q ss_pred             EEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCe
Q 009203          391 SAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSAL  470 (540)
Q Consensus       391 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v  470 (540)
                      .++.+|.+..+|..+|+.+........ ..+....     ..++.++.+|.+..+|..+++.....-    .. .+ ...
T Consensus       261 ~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~-----~~vy~~~~~g~l~ald~~tG~~~W~~~----~~-~~-~~~  328 (394)
T PRK11138        261 ALAYNGNLVALDLRSGQIVWKREYGSV-NDFAVDG-----GRIYLVDQNDRVYALDTRGGVELWSQS----DL-LH-RLL  328 (394)
T ss_pred             EEEcCCeEEEEECCCCCEEEeecCCCc-cCcEEEC-----CEEEEEcCCCeEEEEECCCCcEEEccc----cc-CC-Ccc
Confidence            788899999999999988766543321 1111111     367777889999999998876533211    00 00 011


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeE-EEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          471 INQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFK-AVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       471 ~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~-l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .+..+  .+.+|+.++.||.|+++|..+  ++.+.........+.+ ..+  .+..|+.++.||.|+.+++
T Consensus       329 ~sp~v--~~g~l~v~~~~G~l~~ld~~t--G~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        329 TAPVL--YNGYLVVGDSEGYLHWINRED--GRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             cCCEE--ECCEEEEEeCCCEEEEEECCC--CCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            11222  256788889999999999987  6665555433222322 222  2457888899999988763

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.87  E-value=4.9e-08  Score=83.62  Aligned_cols=152  Identities=16%  Similarity=0.234  Sum_probs=98.5

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEe--ecCCCCCeEEEEecCCCCCc
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAH--TADSGDSQISVLNLNKTKGR  313 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~--~~~~~d~~i~vwd~~~~~~~  313 (540)
                      +.-++++..||.+.+.+.+..   ..+.....   ..|.+ -.+.++...++.|.++.  +. ..-+..+.|+++..+  
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~---~~~~~-~as~~~~~~~~~i~s~~~g~~-n~~d~~~a~~~~p~~--  170 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKD---LALMSRIP---SIHSG-SASRKICRHGNSILSGGCGNW-NAQDNFYANTLDPIK--  170 (319)
T ss_pred             CCceEecCCCceEEEEechHH---Hhhhhhcc---ccccc-ccccceeecccEEecCCcceE-eeccceeeecccccc--
Confidence            566899999999999998762   22211111   11111 12233444555555530  00 123445667666321  


Q ss_pred             eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEE
Q 009203          314 ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSA  392 (540)
Q Consensus       314 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~  392 (540)
                         .....+. ....|.+++-+|...+++++|+.||.+.+||.+....    .......|..+++.+.|+| ++..|+++
T Consensus       171 ---t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~----p~S~l~ahk~~i~eV~FHpk~p~~Lft~  242 (319)
T KOG4714|consen  171 ---TLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM----PVSLLKAHKAEIWEVHFHPKNPEHLFTC  242 (319)
T ss_pred             ---ccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccc----hHHHHHHhhhhhhheeccCCCchheeEe
Confidence               1111111 1234999999996677788899999999999998753    3333356999999999998 67899999


Q ss_pred             eCCCeEEEEECCC
Q 009203          393 GADKRIIGFDAGV  405 (540)
Q Consensus       393 ~~dg~i~iwd~~~  405 (540)
                      +.||.+..||..+
T Consensus       243 sedGslw~wdas~  255 (319)
T KOG4714|consen  243 SEDGSLWHWDAST  255 (319)
T ss_pred             cCCCcEEEEcCCC
Confidence            9999999999874

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.86  E-value=1.1e-08  Score=99.61  Aligned_cols=219  Identities=16%  Similarity=0.191  Sum_probs=139.6

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~  296 (540)
                      ++-||...|+.+-|+|+....|++++.|-.|..||+.+.....-...      .-| ..-..++|+-. +..+|+     
T Consensus       109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~------~w~-s~asqVkwnyk~p~vlas-----  176 (1081)
T KOG0309|consen  109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS------SWR-SAASQVKWNYKDPNVLAS-----  176 (1081)
T ss_pred             EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee------ccc-ccCceeeecccCcchhhh-----
Confidence            35699999999999998888999999999999999987653221111      112 33467999874 445555     


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +....|.+||...+  ...+..+.+   |...|+.++|+...-..+.+++.||+|++||.......+...    .....+
T Consensus       177 shg~~i~vwd~r~g--s~pl~s~K~---~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~----vtt~~p  247 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKG--STPLCSLKG---HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT----VTTNFP  247 (1081)
T ss_pred             ccCCceEEEeccCC--CcceEEecc---cceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee----ccccCc
Confidence            68889999999977  345555655   567788999876556778999999999999998654322111    113345


Q ss_pred             eeEEEeccCCCEEEE--EeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          377 VMGVAGMQQKQIVLS--AGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       377 v~~l~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      |.--.|.|-|.-.+.  .-.+..+.+++.++                                   .-..|+..+...++
T Consensus       248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n-----------------------------------~d~e~n~~~~~~pV  292 (1081)
T KOG0309|consen  248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN-----------------------------------SDLEWNVFDLNTPV  292 (1081)
T ss_pred             ceeccccccCceeEeccccCCeeeeeccccc-----------------------------------hhhhhccccCCcce
Confidence            555556664332221  11122233332221                                   22334444444333


Q ss_pred             eeeccccccCccccCeEEEEEcCC----------CCEEEEEeCCCcEEEEeccC
Q 009203          455 HAFGWKQESSESQSALINQSWSPD----------GLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~----------g~~l~sg~~dg~i~iwd~~~  498 (540)
                      +      .+.||...|....|-..          .-.|++=+.|..+++|-+.+
T Consensus       293 h------~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  293 H------TFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             e------eecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            3      33566665555444321          12588999999999998874

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=6.2e-06  Score=75.46  Aligned_cols=260  Identities=17%  Similarity=0.131  Sum_probs=149.0

Q ss_pred             EEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcc
Q 009203          248 IRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVK  326 (540)
Q Consensus       248 v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  326 (540)
                      |++.+..+-+...-        .++|...|.+++|+|..+ ++..+    +.+..|.|.|+.+.   .++..+..    .
T Consensus       175 v~~l~~~~fkssq~--------lp~~g~~IrdlafSp~~~GLl~~a----sl~nkiki~dlet~---~~vssy~a----~  235 (463)
T KOG1645|consen  175 VQKLESHDFKSSQI--------LPGEGSFIRDLAFSPFNEGLLGLA----SLGNKIKIMDLETS---CVVSSYIA----Y  235 (463)
T ss_pred             eEEeccCCcchhhc--------ccccchhhhhhccCccccceeeee----ccCceEEEEecccc---eeeeheec----c
Confidence            66666555443321        257888899999999887 67777    89999999999985   44444443    2


Q ss_pred             cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec------cCCCEEEEEeCCCeEEE
Q 009203          327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM------QQKQIVLSAGADKRIIG  400 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s------~~~~~l~~~~~dg~i~i  400 (540)
                      ..+++++|.-++.++|..|...|.|.|||++..+....  .+.......+|..++.-      +.|.+++....+  +..
T Consensus       236 ~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~--e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f  311 (463)
T KOG1645|consen  236 NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLM--ELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQF  311 (463)
T ss_pred             CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHh--hhhhhhccCcceeecccCccccccccceEEeeehh--hhh
Confidence            67999999987788889999999999999998663111  11111123344444432      235555555443  556


Q ss_pred             EECCCC----CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCe------EEE-EECCCCcceeee----eccccccCc
Q 009203          401 FDAGVG----RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ------LRL-YDIRLRQTEIHA----FGWKQESSE  465 (540)
Q Consensus       401 wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~------v~i-~d~~~~~~~~~~----~~~~~~~~~  465 (540)
                      |.+...    .++......+.++++.+++...  ..|++.-.+.+      |-. -|-.++......    ++.... +-
T Consensus       312 ~ei~~s~~~~p~vlele~pG~cismqy~~~sn--h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~-kl  388 (463)
T KOG1645|consen  312 YEIVFSAECLPCVLELEPPGICISMQYHGVSN--HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQT-KL  388 (463)
T ss_pred             hhhhccccCCCcccccCCCcceeeeeecCccc--eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccc-cc
Confidence            665432    2233344456677777766432  34444433211      111 011111111000    000000 00


Q ss_pred             cccCeEEEEEcCCCCEEE-EEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC-C-CEEEEEEcCCcEEEEe
Q 009203          466 SQSALINQSWSPDGLYIT-SGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS-H-PLLISISSDLNIGLHK  539 (540)
Q Consensus       466 ~~~~v~~~~~sp~g~~l~-sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~-~-~~l~s~~~dg~v~iw~  539 (540)
                      +..  ..+.-.++.++|+ +|++.+.+.+||..+  ...+.++... .+|.+++.... + .+|++-. |..++||+
T Consensus       389 ~t~--~ai~~~~~nn~iv~~gd~tn~lil~D~~s--~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk  459 (463)
T KOG1645|consen  389 STT--QAIRAVEDNNYIVVVGDSTNELILQDPHS--FEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYK  459 (463)
T ss_pred             ccc--cceeccccccEEEEecCCcceeEEeccch--hheeeecccC-cceeecceeecCCcchhhhee-cceEEEEe
Confidence            000  1112234555554 566678999999998  7777777643 67888876543 3 4666654 55677765

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.83  E-value=2.6e-08  Score=85.25  Aligned_cols=141  Identities=17%  Similarity=0.205  Sum_probs=92.5

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeeeccC-----ccEEEEeecCCCCCceEEEEE-----cCCCeEEEEECCCCccee
Q 009203          385 QKQIVLSAGADKRIIGFDAGVGRADFKHQIE-----SKCMSVLPNPCDFNLFMVQTG-----TPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       385 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~-----~~dg~v~i~d~~~~~~~~  454 (540)
                      -++-++++..||.+.+++.+....+ .++..     ....++.-.  +   ..+.++     ..-+..+.|+++..+...
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~-~~~i~~~~~~~as~~~~~~--~---~~i~s~~~g~~n~~d~~~a~~~~p~~t~~  173 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLAL-MSRIPSIHSGSASRKICRH--G---NSILSGGCGNWNAQDNFYANTLDPIKTLI  173 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhh-hhhcccccccccccceeec--c---cEEecCCcceEeeccceeeeccccccccc
Confidence            4677899999999999998862111 11111     111111111  1   122222     122345666666433222


Q ss_pred             eeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC-CEEEEEEcC
Q 009203          455 HAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH-PLLISISSD  532 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~-~~l~s~~~d  532 (540)
                      ..       ......|++++-+|.. ..+++|+.||.+.+||.++. ..+...+..|..+|+.+-|+|.. ..|+++++|
T Consensus       174 ~~-------~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed  245 (319)
T KOG4714|consen  174 PS-------KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED  245 (319)
T ss_pred             cc-------ccccccchhhhCCcccccEEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence            11       1112248999999954 56778899999999999985 56777889999999999999955 689999999


Q ss_pred             CcEEEEe
Q 009203          533 LNIGLHK  539 (540)
Q Consensus       533 g~v~iw~  539 (540)
                      |.+..||
T Consensus       246 Gslw~wd  252 (319)
T KOG4714|consen  246 GSLWHWD  252 (319)
T ss_pred             CcEEEEc
Confidence            9999997

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.79  E-value=1.5e-05  Score=72.92  Aligned_cols=222  Identities=14%  Similarity=0.127  Sum_probs=137.6

Q ss_pred             EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe-cCCCeEEEEeecCCCCCeEEEE
Q 009203          227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH-PQGNSLFSAHTADSGDSQISVL  305 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~-~~~~~l~s~~~~~~~d~~i~vw  305 (540)
                      -++.|.+..+.++++-...+.|..|+..++.... +..          .....+++. +++.++++.     . +.+.++
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~----------~~~~G~~~~~~~g~l~v~~-----~-~~~~~~   65 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL----------PGPNGMAFDRPDGRLYVAD-----S-GGIAVV   65 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES----------SSEEEEEEECTTSEEEEEE-----T-TCEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec----------CCCceEEEEccCCEEEEEE-----c-CceEEE
Confidence            3678888558888888888999999998765321 110          115678888 665555543     3 445666


Q ss_pred             ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC--------CcEEEEecCCCCCccccceeecccCCcce
Q 009203          306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD--------HAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      |..+++.......... .......+.+++.| +|++.++....        |.|..++.. ++.    ..+..  .-...
T Consensus        66 d~~~g~~~~~~~~~~~-~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~----~~~~~--~~~~p  136 (246)
T PF08450_consen   66 DPDTGKVTVLADLPDG-GVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV----TVVAD--GLGFP  136 (246)
T ss_dssp             ETTTTEEEEEEEEETT-CSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE----EEEEE--EESSE
T ss_pred             ecCCCcEEEEeeccCC-CcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE----EEEec--Ccccc
Confidence            9887633222222211 11245689999999 89877776543        557777777 442    22221  34557


Q ss_pred             eEEEeccCCCEEE-EEeCCCeEEEEECCCCCe------eee-eccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          378 MGVAGMQQKQIVL-SAGADKRIIGFDAGVGRA------DFK-HQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       378 ~~l~~s~~~~~l~-~~~~dg~i~iwd~~~~~~------~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      +.|+|+|+++.|+ +-+..+.|..|++.....      ... .... ...-.++.+.++   .+.++....+.|.++|..
T Consensus       137 NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G---~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  137 NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG---NLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS----EEEEEETTTEEEEEETT
T ss_pred             cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC---CEEEEEcCCCEEEEECCC
Confidence            8999999998776 556788899999864222      111 1112 246778888877   577777788999999988


Q ss_pred             CCcceeeeeccccccCccccCeEEEEE-cCCCCEEEEE
Q 009203          449 LRQTEIHAFGWKQESSESQSALINQSW-SPDGLYITSG  485 (540)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~g~~l~sg  485 (540)
                       ++. ...+    .+.  ...+++++| .++.+.|+..
T Consensus       214 -G~~-~~~i----~~p--~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  214 -GKL-LREI----ELP--VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             -SCE-EEEE----E-S--SSSEEEEEEESTTSSEEEEE
T ss_pred             -ccE-EEEE----cCC--CCCEEEEEEECCCCCEEEEE
Confidence             443 2222    112  237899999 4666665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.72  E-value=1.8e-08  Score=62.26  Aligned_cols=38  Identities=26%  Similarity=0.313  Sum_probs=35.8

Q ss_pred             cccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          502 KPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       502 ~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      +++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46778899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.72  E-value=3.5e-08  Score=60.97  Aligned_cols=35  Identities=23%  Similarity=0.526  Sum_probs=32.7

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEE
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQ  252 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~  252 (540)
                      .++.+|.+.|++|+|+|+ +.+|++|+.|+.|++||
T Consensus         5 ~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    5 RTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence            457899999999999996 99999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.71  E-value=8.1e-06  Score=74.44  Aligned_cols=218  Identities=14%  Similarity=0.120  Sum_probs=129.2

Q ss_pred             CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203          245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH  324 (540)
Q Consensus       245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  324 (540)
                      +|+|..||..+++.+.......     .... ..+. ..+++..++++    +.++.|..||..+++   .+-.......
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-----~~~~-~~~~-~~~~~~~v~~~----~~~~~l~~~d~~tG~---~~W~~~~~~~   67 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-----GIGG-PVAT-AVPDGGRVYVA----SGDGNLYALDAKTGK---VLWRFDLPGP   67 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-----SCSS-EEET-EEEETTEEEEE----ETTSEEEEEETTTSE---EEEEEECSSC
T ss_pred             CCEEEEEECCCCCEEEEEECCC-----CCCC-ccce-EEEeCCEEEEE----cCCCEEEEEECCCCC---EEEEeecccc
Confidence            6788889988888776663311     1111 1111 33356677777    799999999998883   2322222111


Q ss_pred             cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203          325 VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG  404 (540)
Q Consensus       325 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~  404 (540)
                      ....   ...   .+..++.++.++.|+.+|..+++..|+.......... .........++..++++..++.|..+|++
T Consensus        68 ~~~~---~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  140 (238)
T PF13360_consen   68 ISGA---PVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPK  140 (238)
T ss_dssp             GGSG---EEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETT
T ss_pred             ccce---eee---cccccccccceeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecC
Confidence            1111   222   4456777778889999999999976653211101111 11222222247888888889999999999


Q ss_pred             CCCeeeeeccCccE------------EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE
Q 009203          405 VGRADFKHQIESKC------------MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN  472 (540)
Q Consensus       405 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~  472 (540)
                      +|+.+.........            ....+. .+    .++.++.++.+..+|+.+++... ..    .    ...+..
T Consensus       141 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~v~~~~~~g~~~~~d~~tg~~~w-~~----~----~~~~~~  206 (238)
T PF13360_consen  141 TGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG----RVYVSSGDGRVVAVDLATGEKLW-SK----P----ISGIYS  206 (238)
T ss_dssp             TTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT----EEEEECCTSSEEEEETTTTEEEE-EE----C----SS-ECE
T ss_pred             CCcEEEEeecCCCCCCcceeeecccccceEEE-CC----EEEEEcCCCeEEEEECCCCCEEE-Ee----c----CCCccC
Confidence            99987665442211            222222 22    55566666653334999887442 11    1    111222


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          473 QSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       473 ~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                       ....++..|++++.++.|..||+.+
T Consensus       207 -~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  207 -LPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             -CEECCCTEEEEEETTTEEEEEETTT
T ss_pred             -CceeeCCEEEEEeCCCEEEEEECCC
Confidence             1345778888888999999999998

...

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=4.7e-07  Score=89.77  Aligned_cols=184  Identities=16%  Similarity=0.121  Sum_probs=131.0

Q ss_pred             cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC
Q 009203          327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG  406 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~  406 (540)
                      ..+.|++++   +..|+-|+.+|.|++++....-     ...  ..|...      ..+|.++++|+.||.|.|..+-+.
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-----~~~--~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~  103 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-----KTN--FDHSSS------ILEGEYVASCSDDGKVVIGSLFTD  103 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecCCcc-----ccc--cccccc------ccCCceEEEecCCCcEEEeeccCC
Confidence            457777774   4789999999999999987542     111  114333      568999999999999999999999


Q ss_pred             CeeeeeccCccEEEEeecCC--CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203          407 RADFKHQIESKCMSVLPNPC--DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS  484 (540)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  484 (540)
                      +....+.....+.+++++|+  ......+++|+..| +.++.-+-.+.....     .+....++|.++.|  .|+++|-
T Consensus       104 ~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-----~l~~~eG~I~~i~W--~g~lIAW  175 (846)
T KOG2066|consen  104 DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-----VLSEGEGPIHSIKW--RGNLIAW  175 (846)
T ss_pred             ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-----eeecCccceEEEEe--cCcEEEE
Confidence            98888999999999999997  33336889999888 777765432221111     23456789999999  6889999


Q ss_pred             EeCCCcEEEEeccCCCCccccccccccc------ceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          485 GSADPVIHLFDIRYSANKPSQSIRAHQK------RVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       485 g~~dg~i~iwd~~~~~~~~~~~~~~h~~------~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ++.+| |+|||+..  +..+..+.....      .-..+.|.++.+++ . |...+|+|..
T Consensus       176 and~G-v~vyd~~~--~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-I-GW~d~v~i~~  231 (846)
T KOG2066|consen  176 ANDDG-VKVYDTPT--RQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-I-GWGDSVKICS  231 (846)
T ss_pred             ecCCC-cEEEeccc--cceeeccCCCCCCCCcccCCCceEecCCCeEE-E-ecCCeEEEEE
Confidence            98888 99999997  444444432222      23567887765433 3 3444566653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.66  E-value=2.8e-05  Score=71.46  Aligned_cols=289  Identities=12%  Similarity=0.142  Sum_probs=157.9

Q ss_pred             cccccceEEecCCCCeEEEeccc------hhcccccCceEEEEEecCCCcEEEEEe----------CCceEEEEEcCCCC
Q 009203          194 HRELIPLVRTSASPATIHCHTSN------HVSSLHKRKLRSLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRG  257 (540)
Q Consensus       194 ~~~~v~~~~~~~~d~~i~~~~~~------~~~~~h~~~V~~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~  257 (540)
                      |+-+|....+......+.++|+.      .+-.|.   .-.+..+|| ++.+.+++          ..-.|.+||..+..
T Consensus         3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~---~~~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~   78 (342)
T PF06433_consen    3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGF---LGNVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDTQTLS   78 (342)
T ss_dssp             TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEES---SEEEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEETTTTE
T ss_pred             cEEEEECCccccccceEEEEECCCCcEEEEeeccc---CCceeECCC-CCEEEEEEEEEeccccccceeEEEEEecCcCc
Confidence            44455555554445566666654      122233   233667896 77666642          33469999999876


Q ss_pred             CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC
Q 009203          258 SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW  337 (540)
Q Consensus       258 ~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  337 (540)
                      ....+....... .........++++.||+++++...  +-...|.|-|+...   +.+..+..    .+ +..  .-|.
T Consensus        79 ~~~EI~iP~k~R-~~~~~~~~~~~ls~dgk~~~V~N~--TPa~SVtVVDl~~~---kvv~ei~~----PG-C~~--iyP~  145 (342)
T PF06433_consen   79 PTGEIEIPPKPR-AQVVPYKNMFALSADGKFLYVQNF--TPATSVTVVDLAAK---KVVGEIDT----PG-CWL--IYPS  145 (342)
T ss_dssp             EEEEEEETTS-B---BS--GGGEEE-TTSSEEEEEEE--SSSEEEEEEETTTT---EEEEEEEG----TS-EEE--EEEE
T ss_pred             ccceEecCCcch-heecccccceEEccCCcEEEEEcc--CCCCeEEEEECCCC---ceeeeecC----CC-EEE--EEec
Confidence            655554432100 001123456789999998887632  56678999999875   55555543    12 222  2342


Q ss_pred             CCCEEEEEecCCcEEEEecC-CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--ecc
Q 009203          338 ENPCFATGGSDHAVVLWSER-DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQI  414 (540)
Q Consensus       338 ~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~  414 (540)
                      .+..|.+-+.||.+.-..+. .|+...+...+...........-++...+..++..+.+|.|+-.|+........  ...
T Consensus       146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~  225 (342)
T PF06433_consen  146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL  225 (342)
T ss_dssp             ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred             CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence            44568888889999988888 444321111111111111222334455566677788999999999886654221  110


Q ss_pred             -----------CccEEEEeecCCCCCceEEEEEcCCC-------eEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          415 -----------ESKCMSVLPNPCDFNLFMVQTGTPGR-------QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       415 -----------~~~~~~~~~~~~~~~~~~l~~~~~dg-------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                                 .+...-+++++.......|.-.+.++       .|.+||+.+++...+.-        -..++.+|..+
T Consensus       226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--------l~~~~~Si~Vs  297 (342)
T PF06433_consen  226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--------LEHPIDSIAVS  297 (342)
T ss_dssp             S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--------EEEEESEEEEE
T ss_pred             cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--------CCCccceEEEc
Confidence                       11112344454332212222222222       48888998887655431        12357789999


Q ss_pred             CCCC-EEEEE-eCCCcEEEEeccCCCCcccccccc
Q 009203          477 PDGL-YITSG-SADPVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       477 p~g~-~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~  509 (540)
                      .+.+ +|++. ..++.|.+||..+  ++.+.++..
T Consensus       298 qd~~P~L~~~~~~~~~l~v~D~~t--Gk~~~~~~~  330 (342)
T PF06433_consen  298 QDDKPLLYALSAGDGTLDVYDAAT--GKLVRSIEQ  330 (342)
T ss_dssp             SSSS-EEEEEETTTTEEEEEETTT----EEEEE--
T ss_pred             cCCCcEEEEEcCCCCeEEEEeCcC--CcEEeehhc
Confidence            8776 55443 4679999999998  777777663

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.65  E-value=1.6e-07  Score=83.85  Aligned_cols=142  Identities=11%  Similarity=0.116  Sum_probs=104.5

Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC--ccccceeecccCC
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED--SWKPKALHRNLHS  374 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~  374 (540)
                      +.+..|.+-|+.++..    +.+.    .++.|.++.|.. .++++..|..+|.|..+|++.+..  .|....   ..|.
T Consensus       231 G~sqqv~L~nvetg~~----qsf~----sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r---lyh~  298 (425)
T KOG2695|consen  231 GLSQQVLLTNVETGHQ----QSFQ----SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR---LYHD  298 (425)
T ss_pred             cccceeEEEEeecccc----cccc----cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEE---EEcC
Confidence            6788899999998732    2232    246699999998 889999999999999999987622  222333   3389


Q ss_pred             cceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCe---eeeeccCccEEEEeecCC--CCCceEEEEEcCCCeEEEEECC
Q 009203          375 SAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRA---DFKHQIESKCMSVLPNPC--DFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       375 ~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      +.|+++..-. ++++|++.+.+|.|++||++.-++   +..+.  +++...++.|.  +.....+++++.|...+||.++
T Consensus       299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecc
Confidence            9999998766 789999999999999999997666   44433  33333333221  1111478889999999999999


Q ss_pred             CCcc
Q 009203          449 LRQT  452 (540)
Q Consensus       449 ~~~~  452 (540)
                      .+..
T Consensus       377 ~ghL  380 (425)
T KOG2695|consen  377 SGHL  380 (425)
T ss_pred             cCce
Confidence            8764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.64  E-value=4.6e-06  Score=81.81  Aligned_cols=164  Identities=13%  Similarity=0.078  Sum_probs=109.9

Q ss_pred             eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203          226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL  305 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw  305 (540)
                      |.=-+++. .+.+++.|+.-|.+.+|+-..+...... .      .+-...+..+..+++..++|.|    +..|.|.++
T Consensus        36 v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~-~------~~~~~~~~~~~vs~~e~lvAag----t~~g~V~v~  103 (726)
T KOG3621|consen   36 VKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLK-N------EGATGITCVRSVSSVEYLVAAG----TASGRVSVF  103 (726)
T ss_pred             EEEEEeec-CCceEEEecccceEEEEecCchhhhccc-c------cCccceEEEEEecchhHhhhhh----cCCceEEee
Confidence            33334444 4789999999999999998776532211 1      2333445667778888888888    999999999


Q ss_pred             ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC-CCccccceeecccCCcceeEEEecc
Q 009203          306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA-EDSWKPKALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~  384 (540)
                      .++..........-.....|+..|++++|++ ++..+++|...|.|..-.+... ......+.+  ....+.|-.+.+..
T Consensus       104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i--l~~ds~IVQlD~~q  180 (726)
T KOG3621|consen  104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI--LSEDSEIVQLDYLQ  180 (726)
T ss_pred             hhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee--eccCcceEEeeccc
Confidence            9987655555555444445788999999999 9999999999999998888772 211112222  22556777777763


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCC
Q 009203          385 QKQIVLSAGADKRIIGFDAGVGR  407 (540)
Q Consensus       385 ~~~~l~~~~~dg~i~iwd~~~~~  407 (540)
                       +.+|++...  ...+++++.+.
T Consensus       181 -~~LLVStl~--r~~Lc~tE~et  200 (726)
T KOG3621|consen  181 -SYLLVSTLT--RCILCQTEAET  200 (726)
T ss_pred             -ceehHhhhh--hhheeecchhH
Confidence             344443332  34456665443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=5e-07  Score=83.51  Aligned_cols=207  Identities=8%  Similarity=-0.001  Sum_probs=145.7

Q ss_pred             cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEEC
Q 009203          325 VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDA  403 (540)
Q Consensus       325 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~  403 (540)
                      |.+.|+.+...  -.+++.+++.||.++.|--..-..+  -.......|.+.|.+++.+.+|.++.+++. |..++++|+
T Consensus         8 hrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGv--EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    8 HRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGV--EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             ccceeeeEeee--hhheEEeeecchhhhhcCCCCccce--eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence            55666666544  5789999999999999976542211  112222458888999999999999999777 999999999


Q ss_pred             CCCCeeeeecc--CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE
Q 009203          404 GVGRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY  481 (540)
Q Consensus       404 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  481 (540)
                      .+-..+.....  -.....+..++.+.-..+-++...++.+.++|-....+....+     -.-|..+|..+.+.+-+..
T Consensus        84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f-----kklH~sPV~~i~y~qa~Ds  158 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF-----KKLHFSPVKKIRYNQAGDS  158 (558)
T ss_pred             eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee-----cccccCceEEEEeeccccc
Confidence            87554432222  2233344444443332334445567899999988776554432     2458899999999999999


Q ss_pred             EEEEeCCCcEEEEeccCC----CCccccc---------ccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          482 ITSGSADPVIHLFDIRYS----ANKPSQS---------IRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       482 l~sg~~dg~i~iwd~~~~----~~~~~~~---------~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +++....|.|.-|.....    ..+....         +.-......++.|+|+|..+.+-+.|..|+++++
T Consensus       159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF  230 (558)
T ss_pred             eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence            999999999999998731    1111111         1223446789999999999999999999999864

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.63  E-value=1.8e-05  Score=82.41  Aligned_cols=204  Identities=9%  Similarity=0.128  Sum_probs=130.7

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      +.|.++.|..++..|+.+    ...|.|.+-|..+... .++..      -.+.|.+++|+| |...++..+.++++.+-
T Consensus        69 ~~i~s~~fl~d~~~i~v~----~~~G~iilvd~et~~~-eivg~------vd~GI~aaswS~-Dee~l~liT~~~tll~m  136 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVI----TALGDIILVDPETLEL-EIVGN------VDNGISAASWSP-DEELLALITGRQTLLFM  136 (1265)
T ss_pred             cceEEEEEecccceEEEE----ecCCcEEEEcccccce-eeeee------ccCceEEEeecC-CCcEEEEEeCCcEEEEE
Confidence            679999999999988888    8999999998887521 22222      235699999999 99999988887877654


Q ss_pred             ec----CCCCCc--------------cccc--eeec----------c---------cCCcceeEEEeccCCCEEEEE---
Q 009203          355 SE----RDAEDS--------------WKPK--ALHR----------N---------LHSSAVMGVAGMQQKQIVLSA---  392 (540)
Q Consensus       355 d~----~~~~~~--------------~~~~--~~~~----------~---------~~~~~v~~l~~s~~~~~l~~~---  392 (540)
                      +-    -..+.+              |...  .+..          .         ...+.=+++.|--||.++++.   
T Consensus       137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~  216 (1265)
T KOG1920|consen  137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE  216 (1265)
T ss_pred             eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence            32    111100              0000  0000          0         011122458898899999883   


Q ss_pred             --eCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEE---cCCCeEEEEECCCCcceeeeeccccccCcc
Q 009203          393 --GADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTG---TPGRQLRLYDIRLRQTEIHAFGWKQESSES  466 (540)
Q Consensus       393 --~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  466 (540)
                        ...+.|++||.+ |..-.. ......-.+++|-|.|   ..+++-   ..|+.|.+|.-+....--..+    .....
T Consensus       217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg---s~iA~iq~~~sd~~IvffErNGL~hg~f~l----~~p~d  288 (1265)
T KOG1920|consen  217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG---SLIAAIQCKTSDSDIVFFERNGLRHGEFVL----PFPLD  288 (1265)
T ss_pred             ccCCceeEEEeccc-chhhcccCcccccccceeecCCC---CeEeeeeecCCCCcEEEEecCCcccccccc----CCccc
Confidence              223789999988 443222 2333445678888877   455543   456679999877544321111    11222


Q ss_pred             ccCeEEEEEcCCCCEEEE---EeCCCcEEEEeccC
Q 009203          467 QSALINQSWSPDGLYITS---GSADPVIHLFDIRY  498 (540)
Q Consensus       467 ~~~v~~~~~sp~g~~l~s---g~~dg~i~iwd~~~  498 (540)
                      ...|..++|+.++..||+   ......|++|-+.+
T Consensus       289 e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  289 EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence            334899999999999997   44555699999886

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.60  E-value=0.00018  Score=62.42  Aligned_cols=112  Identities=12%  Similarity=-0.011  Sum_probs=77.2

Q ss_pred             ecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC
Q 009203          232 NPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK  311 (540)
Q Consensus       232 spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~  311 (540)
                      .+|...+++.|+..+.+.--|..++.........         ..|.+-+.- -|++++.|    ...|.+++.+..+|.
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg---------~RiE~sa~v-vgdfVV~G----Cy~g~lYfl~~~tGs   84 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG---------VRIECSAIV-VGDFVVLG----CYSGGLYFLCVKTGS   84 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEEeehhhC---------ceeeeeeEE-ECCEEEEE----EccCcEEEEEecchh
Confidence            3455678888898888888888888765543221         112222222 47788888    899999999999985


Q ss_pred             CceeEEeecCCCCcccceeEE-EEeCCCCCEEEEEecCCcEEEEecCCCCCcccc
Q 009203          312 GRACVTFLDDKPHVKGIINSI-IFLPWENPCFATGGSDHAVVLWSERDAEDSWKP  365 (540)
Q Consensus       312 ~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  365 (540)
                      .-......+.       |.+- ...+ ++.++..|+.|++.+..|..+..++++.
T Consensus        85 ~~w~f~~~~~-------vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   85 QIWNFVILET-------VKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             heeeeeehhh-------hccceEEcC-CCceEEEecCCCcEEEecccccceEEec
Confidence            4333433332       3322 2344 8899999999999999999988776653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=3.4e-06  Score=84.11  Aligned_cols=110  Identities=19%  Similarity=0.308  Sum_probs=80.8

Q ss_pred             eEEEEEecCCCcEEEEEeC----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          226 LRSLSLNPVNEQLFVTSAL----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      -+-.+|+| ...++|.++.    .|.|.||- ++++.......      +-|   +++++|+|..-.|+.+    -.-|.
T Consensus        18 sti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~------P~h---atSLCWHpe~~vLa~g----we~g~   82 (1416)
T KOG3617|consen   18 STISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY------PVH---ATSLCWHPEEFVLAQG----WEMGV   82 (1416)
T ss_pred             ccccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCccccc------cee---hhhhccChHHHHHhhc----cccce
Confidence            34457888 5788888763    47888874 34443232211      222   5679999998889998    88999


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER  357 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  357 (540)
                      +.+|...+.   +.-+...   .|..+|..+.|+| +|..++++..-|.|.+|...
T Consensus        83 ~~v~~~~~~---e~htv~~---th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   83 SDVQKTNTT---ETHTVVE---THPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eEEEecCCc---eeeeecc---CCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence            999998764   2222222   4778899999999 99999999999999999876

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=2.9e-06  Score=84.30  Aligned_cols=183  Identities=15%  Similarity=0.130  Sum_probs=126.7

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      +.++|++++   +++|+-|..+|.|++.+....-  .+.        ..|...      ..+|.++++|    +.||.|.
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~--------~~~s~~------~~~Gey~asC----S~DGkv~   96 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTN--------FDHSSS------ILEGEYVASC----SDDGKVV   96 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecCCcc--ccc--------cccccc------ccCCceEEEe----cCCCcEE
Confidence            568888886   5689999999999999986532  111        122222      5679999999    9999999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCC----CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW----ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      |-.+.+.+.   ...+..    ..++.+++++|+    ....+++|+..| +.++.-+=-..   ..........++|.+
T Consensus        97 I~sl~~~~~---~~~~df----~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn---k~~v~l~~~eG~I~~  165 (846)
T KOG2066|consen   97 IGSLFTDDE---ITQYDF----KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN---KDSVVLSEGEGPIHS  165 (846)
T ss_pred             EeeccCCcc---ceeEec----CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC---ccceeeecCccceEE
Confidence            999987633   333332    357999999993    256799999888 77764332111   112222346789999


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-------ccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      +.|.  |++++-++.+| |++||+..++.+.....+       .....+.|.+..    .|+.|-. .+|+|..++
T Consensus       166 i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~----~LVIGW~-d~v~i~~I~  233 (846)
T KOG2066|consen  166 IKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED----RLVIGWG-DSVKICSIK  233 (846)
T ss_pred             EEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC----eEEEecC-CeEEEEEEe
Confidence            9995  89999888876 899999988776543322       233456676664    5666544 478888887

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=3.1e-07  Score=82.05  Aligned_cols=155  Identities=12%  Similarity=0.131  Sum_probs=111.7

Q ss_pred             EEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC--CceeEE
Q 009203          240 VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK--GRACVT  317 (540)
Q Consensus       240 ~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~--~~~~~~  317 (540)
                      ++.+.+-.|-+-|++++-. ..+         .....|.++.|...+++++.|    ..+|.|...|++...  ...+.+
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf---------~sksDVfAlQf~~s~nLv~~G----cRngeI~~iDLR~rnqG~~~~a~  293 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSF---------QSKSDVFALQFAGSDNLVFNG----CRNGEIFVIDLRCRNQGNGWCAQ  293 (425)
T ss_pred             ecccccceeEEEEeecccc-ccc---------ccchhHHHHHhcccCCeeEec----ccCCcEEEEEeeecccCCCcceE
Confidence            4455567788889887642 122         234668899999989999999    999999999998642  123444


Q ss_pred             eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE--EEeccCCCEEEEEeCC
Q 009203          318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG--VAGMQQKQIVLSAGAD  395 (540)
Q Consensus       318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~--l~~s~~~~~l~~~~~d  395 (540)
                      .+.    |.+.|+++.....++..|++.+.+|+|++||.+.-++...  .....+|...-.-  +...+....+++++.|
T Consensus       294 rly----h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~--V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD  367 (425)
T KOG2695|consen  294 RLY----HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS--VMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD  367 (425)
T ss_pred             EEE----cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc--eeeeecccccccccccccccccceEEEccCe
Confidence            443    5678999887765788999999999999999997765322  2333455433222  2335567788899999


Q ss_pred             CeEEEEECCCCCeeeeecc
Q 009203          396 KRIIGFDAGVGRADFKHQI  414 (540)
Q Consensus       396 g~i~iwd~~~~~~~~~~~~  414 (540)
                      -..+||.++.|..+.....
T Consensus       368 cytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  368 CYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             eEEEEEecccCceeeccCC
Confidence            9999999999988665443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.57  E-value=8.2e-08  Score=92.53  Aligned_cols=208  Identities=16%  Similarity=0.190  Sum_probs=135.9

Q ss_pred             cCceEEEEEecCCC-cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecCCCCC
Q 009203          223 KRKLRSLSLNPVNE-QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTADSGDS  300 (540)
Q Consensus       223 ~~~V~~l~~spd~~-~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~~d~  300 (540)
                      ...+.|+++.-+.. .+++.|..+|.|-+-.+......     . ....++|....++++|++ |.++||+|...-..|.
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s-~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds  129 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----S-AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS  129 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----c-ceecccccccccccccccccHHHHHhhhhhhcccC
Confidence            35678888776433 58899999999999887654322     1 111268888999999998 4567777633334678


Q ss_pred             eEEEEecCCC--CCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          301 QISVLNLNKT--KGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       301 ~i~vwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      .+.|||+.+.  ..........+   ......+++|.. +..++.+|.....+.++|++....    ...  ...+..+.
T Consensus       130 ~~~Iwdi~s~ltvPke~~~fs~~---~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~----~~~--svnTk~vq  199 (783)
T KOG1008|consen  130 SLKIWDINSLLTVPKESPLFSSS---TLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLD----SVS--SVNTKYVQ  199 (783)
T ss_pred             CccceecccccCCCccccccccc---cccCcccccccc-Ccchhhcccccchhhhhhhhhhhh----hhh--hhhhhhcc
Confidence            8999999976  22111222211   123466888986 888999999888999999985321    111  11334566


Q ss_pred             EEEecc-CCCEEEEEeCCCeEEEEE-CCCCCe-eeeec-----cCccEEEEeecCCCCCceEEEEE-cCCCeEEEEECCC
Q 009203          379 GVAGMQ-QKQIVLSAGADKRIIGFD-AGVGRA-DFKHQ-----IESKCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRL  449 (540)
Q Consensus       379 ~l~~s~-~~~~l~~~~~dg~i~iwd-~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~  449 (540)
                      .+...| .++++++-. ||.|.+|| .++-+. +....     .......++|.|....  .+++. -..++|++||+..
T Consensus       200 G~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg--lla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  200 GITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG--LLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc--hhhhhccCcceEEEecccc
Confidence            777888 677776554 99999999 443222 22211     1235788999997733  44444 4557899999874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.56  E-value=4.3e-06  Score=83.42  Aligned_cols=112  Identities=13%  Similarity=0.197  Sum_probs=87.2

Q ss_pred             eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC
Q 009203          279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD  358 (540)
Q Consensus       279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  358 (540)
                      -..|+|...++++++......|.|.||- ++|....-+..       .-.+++++|+| ..-.|+.|-.-|.+.+|...+
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-------P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~   90 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-------PVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNT   90 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-------ceehhhhccCh-HHHHHhhccccceeEEEecCC
Confidence            4679999999999876667789999984 33432222211       12367899999 888899999999999999887


Q ss_pred             CCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203          359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG  404 (540)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~  404 (540)
                      .+.    ..+ ...|..+|..+.||++|..++++..-|.+.+|...
T Consensus        91 ~e~----htv-~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   91 TET----HTV-VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cee----eee-ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            663    222 24599999999999999999999999999999876

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=8.8e-06  Score=74.50  Aligned_cols=251  Identities=13%  Similarity=0.129  Sum_probs=143.5

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeec
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTA  295 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~  295 (540)
                      +++.+|...|..++|+|.+.-++..++.+..|+|.|+.+......+.        .| ..+++++|.-|.. +|+.|   
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--------a~-~~~wSC~wDlde~h~IYaG---  254 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--------AY-NQIWSCCWDLDERHVIYAG---  254 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee--------cc-CCceeeeeccCCcceeEEe---
Confidence            46789999999999999755589999999999999999877665552        33 6799999987665 66666   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-----CCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-----ENPCFATGGSDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                       ..+|.|.|||++.....  +..+.+. ....+|..++.-+.     .+.+++....+  +..|.+......+  .....
T Consensus       255 -l~nG~VlvyD~R~~~~~--~~e~~a~-~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~--p~vle  326 (463)
T KOG1645|consen  255 -LQNGMVLVYDMRQPEGP--LMELVAN-VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL--PCVLE  326 (463)
T ss_pred             -ccCceEEEEEccCCCch--Hhhhhhh-hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC--Ccccc
Confidence             89999999999876432  1111110 01233444433221     34445544443  5567665433211  11122


Q ss_pred             ccCCcceeEEEeccCCCEEEEEeCC-C------eEE-EEECCCCCeeeeecc---CccE-----EEEeecCCCCCceEEE
Q 009203          371 NLHSSAVMGVAGMQQKQIVLSAGAD-K------RII-GFDAGVGRADFKHQI---ESKC-----MSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~~~l~~~~~d-g------~i~-iwd~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~l~  434 (540)
                      .+..+.+.++.+.+-.+.++..... .      .+- --|.+.|..+.....   ++..     ....+.+.+.+ .++.
T Consensus       327 le~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn-~iv~  405 (463)
T KOG1645|consen  327 LEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN-YIVV  405 (463)
T ss_pred             cCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc-EEEE
Confidence            2345666777776655555544332 1      111 122233433322110   1110     11122222212 5667


Q ss_pred             EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CC-CEEEEEeCCCcEEEEecc
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DG-LYITSGSADPVIHLFDIR  497 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g-~~l~sg~~dg~i~iwd~~  497 (540)
                      +|...+.+.+||..+.+.....       . -..+|..++... +| .+|++- .|..++||..+
T Consensus       406 ~gd~tn~lil~D~~s~evvQ~l-------~-~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e  461 (463)
T KOG1645|consen  406 VGDSTNELILQDPHSFEVVQTL-------A-LSEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE  461 (463)
T ss_pred             ecCCcceeEEeccchhheeeec-------c-cCcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence            7778889999999987754322       1 124666665543 33 455555 46668888755

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.49  E-value=4.3e-06  Score=84.19  Aligned_cols=187  Identities=14%  Similarity=0.125  Sum_probs=130.4

Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK  364 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  364 (540)
                      ++..++.|    +....+..+|+++.+.   .+....   ..+.|.-|+.   +++.+.+|...|+|.+-|.++.+.   
T Consensus       146 ~~~~~i~G----g~Q~~li~~Dl~~~~e---~r~~~v---~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~---  209 (1118)
T KOG1275|consen  146 GPSTLIMG----GLQEKLIHIDLNTEKE---TRTTNV---SASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFET---  209 (1118)
T ss_pred             CCcceeec----chhhheeeeeccccee---eeeeec---cCCceEEEEe---cCcEEEeecccceEEeecCCcCce---
Confidence            44566666    7777888899997632   222221   1223555555   778999999999999999998764   


Q ss_pred             cceeecccCCcceeEEEeccCCCEEEEEeC---------CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEE
Q 009203          365 PKALHRNLHSSAVMGVAGMQQKQIVLSAGA---------DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQT  435 (540)
Q Consensus       365 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  435 (540)
                      ...+  ..|++.|.++..  .|+.|++|+.         |..|++||++.-+.+...+......=+.|.|.-.  ..+++
T Consensus       210 iht~--~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~--t~~~V  283 (1118)
T KOG1275|consen  210 IHTF--DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLT--TRLAV  283 (1118)
T ss_pred             eeee--eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhccccc--ceEEE
Confidence            2333  569999988776  5899999875         5568999999877765554444444445566443  36788


Q ss_pred             EcCCCeEEEEECCCCcce-eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          436 GTPGRQLRLYDIRLRQTE-IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       436 ~~~dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      ++..|...+-|..+...+ ...+    ........+..+++|++|..|+.|..+|.|.+|.-.
T Consensus       284 ~S~sGq~q~vd~~~lsNP~~~~~----~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  284 TSQSGQFQFVDTATLSNPPAGVK----MVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             EecccceeeccccccCCCcccee----EEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            888999999995443322 1111    112234558999999999999999999999999833

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.47  E-value=0.0001  Score=71.29  Aligned_cols=257  Identities=12%  Similarity=0.131  Sum_probs=135.8

Q ss_pred             CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEe-ecCCC
Q 009203          245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTF-LDDKP  323 (540)
Q Consensus       245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~  323 (540)
                      .+.+.|||+.++.......         ....+....|+|+|+.|+..     .++.|.+++..++   ...+. ..+..
T Consensus        22 ~~~y~i~d~~~~~~~~l~~---------~~~~~~~~~~sP~g~~~~~v-----~~~nly~~~~~~~---~~~~lT~dg~~   84 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTP---------PPPKLQDAKWSPDGKYIAFV-----RDNNLYLRDLATG---QETQLTTDGEP   84 (353)
T ss_dssp             EEEEEEEETTTTEEEESS----------EETTBSEEEE-SSSTEEEEE-----ETTEEEEESSTTS---EEEESES--TT
T ss_pred             ceeEEEEecCCCceEECcC---------CccccccceeecCCCeeEEE-----ecCceEEEECCCC---CeEEeccccce
Confidence            4678899999864322111         13557889999999999997     6789999998765   22221 11100


Q ss_pred             C-------------cccceeEEEEeCCCCCEEEEEecC-C-----------------------------------cEEEE
Q 009203          324 H-------------VKGIINSIIFLPWENPCFATGGSD-H-----------------------------------AVVLW  354 (540)
Q Consensus       324 ~-------------~~~~v~~~~~~p~~~~~l~s~~~d-g-----------------------------------~i~iw  354 (540)
                      .             .-+.-..+-|+| +++.|+....| .                                   .+.|+
T Consensus        85 ~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~  163 (353)
T PF00930_consen   85 GIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVV  163 (353)
T ss_dssp             TEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEE
T ss_pred             eEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEE
Confidence            0             011235688999 88888865432 1                                   24456


Q ss_pred             ecCCCCCcccccee-ecccCCcceeEEEeccCCCEEEEEeC--C---CeEEEEECCCCCeeeee--ccCccE---EEEee
Q 009203          355 SERDAEDSWKPKAL-HRNLHSSAVMGVAGMQQKQIVLSAGA--D---KRIIGFDAGVGRADFKH--QIESKC---MSVLP  423 (540)
Q Consensus       355 d~~~~~~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~~~~~--d---g~i~iwd~~~~~~~~~~--~~~~~~---~~~~~  423 (540)
                      |+.+++... .... ........+..+.|.+++..|+..-.  +   ..+.++|..++......  .....+   ....+
T Consensus       164 ~~~~~~~~~-~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~  242 (353)
T PF00930_consen  164 DLASGKTTE-LDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF  242 (353)
T ss_dssp             ESSSTCCCE-E---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred             ECCCCcEEE-eeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence            666554310 0000 00123556888999999884444332  2   24777888776653322  122211   12333


Q ss_pred             c-CCCCCceEEEEEcCCCe--EEEEECCCCcceeeeeccccccCccccCeEE-EEEcCCCCEEE-EEeCC--CcEEEEec
Q 009203          424 N-PCDFNLFMVQTGTPGRQ--LRLYDIRLRQTEIHAFGWKQESSESQSALIN-QSWSPDGLYIT-SGSAD--PVIHLFDI  496 (540)
Q Consensus       424 ~-~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~-sg~~d--g~i~iwd~  496 (540)
                      . +++.  .++.....+|.  |.+++...+..  .      .+......|+. +.|+++++.|. ++..+  +.-.+|.+
T Consensus       243 ~~~~~~--~~l~~s~~~G~~hly~~~~~~~~~--~------~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v  312 (353)
T PF00930_consen  243 LGPDGN--EFLWISERDGYRHLYLYDLDGGKP--R------QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV  312 (353)
T ss_dssp             -TTTSS--EEEEEEETTSSEEEEEEETTSSEE--E------ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred             ccCCCC--EEEEEEEcCCCcEEEEEcccccce--e------ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence            2 3332  35555557765  44555554432  1      22334456655 67888877654 55442  34555555


Q ss_pred             cCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          497 RYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       497 ~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ....+..+..+....+.-..+.|||+|++++-.+
T Consensus       313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            4321222333333222226899999999876544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.47  E-value=0.00012  Score=72.16  Aligned_cols=268  Identities=14%  Similarity=0.052  Sum_probs=142.8

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccC-CCCC-CCCce-eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCL-SPKH-RRWPE-DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~-~~~h-~~~V~-~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      .+++++.+|.+.-+|..+++...+........ .... ...+. .+..  ++..++.+    +.++.+..+|..+++...
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~----~~~g~l~ald~~tG~~~W  144 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIG----SEKGQVYALNAEDGEVAW  144 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEE----cCCCEEEEEECCCCCCcc
Confidence            45555667777777777777655543221000 0000 00111 1122  34566777    789999999999885432


Q ss_pred             eEEeecCCCCcccceeE-EEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe
Q 009203          315 CVTFLDDKPHVKGIINS-IIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG  393 (540)
Q Consensus       315 ~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~  393 (540)
                      .... .      +.+.+ ...   .+..++.++.++.|.-+|..+++..|+...-..........+-..  .+..++.++
T Consensus       145 ~~~~-~------~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~  212 (394)
T PRK11138        145 QTKV-A------GEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGG  212 (394)
T ss_pred             cccC-C------CceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEc
Confidence            2221 1      11211 122   234566778889999999999997765542110000000001111  134577788


Q ss_pred             CCCeEEEEECCCCCeeeeeccCcc--------EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc
Q 009203          394 ADKRIIGFDAGVGRADFKHQIESK--------CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE  465 (540)
Q Consensus       394 ~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  465 (540)
                      .+|.+..+|..+|+.+........        ...+...|.-.. ..++.++.+|.+..+|..+++.....     .+. 
T Consensus       213 ~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W~~-----~~~-  285 (394)
T PRK11138        213 DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIVWKR-----EYG-  285 (394)
T ss_pred             CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEEEee-----cCC-
Confidence            899999999999887655332111        001111221001 25666778899999999988754321     111 


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccc-cceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          466 SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ-KRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       466 ~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~-~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                         ....+..  .+..|+.++.+|.+..+|..+  ++.+-....-. ....+...  .+.+|+.++.||.|.+.|
T Consensus       286 ---~~~~~~~--~~~~vy~~~~~g~l~ald~~t--G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld  351 (394)
T PRK11138        286 ---SVNDFAV--DGGRIYLVDQNDRVYALDTRG--GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN  351 (394)
T ss_pred             ---CccCcEE--ECCEEEEEcCCCeEEEEECCC--CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence               1111222  466777788899999999987  43322211100 11111222  244667777888877665

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.47  E-value=2.5e-07  Score=92.33  Aligned_cols=212  Identities=15%  Similarity=0.164  Sum_probs=140.2

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-  349 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-  349 (540)
                      ..|....+|++|+-+.++|+.|    +..|.|+++++.+|..   .....   .|.+.|+.+.-+- +|..+++.+.-. 
T Consensus      1098 rd~~~~fTc~afs~~~~hL~vG----~~~Geik~~nv~sG~~---e~s~n---cH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVG----SHAGEIKIFNVSSGSM---EESVN---CHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred             hccccceeeEEeecCCceEEee----eccceEEEEEccCccc---ccccc---ccccccccccccC-CcceeeeeccccC
Confidence            3566778999999999999999    9999999999999843   22222   4778899998888 777766654432 


Q ss_pred             -cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-----CccEEEEee
Q 009203          350 -AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-----ESKCMSVLP  423 (540)
Q Consensus       350 -~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~  423 (540)
                       -..+|++...-.   ...     .-..-.++.|+.....-+.|+......+||+.++..+.++-.     ...-....|
T Consensus      1167 PlsaLW~~~s~~~---~~H-----sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1167 PLSALWDASSTGG---PRH-----SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred             chHHHhccccccC---ccc-----cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence             467899875221   111     123456788876555555666666899999999887654221     223356788


Q ss_pred             cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcc
Q 009203          424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP  503 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~  503 (540)
                      +|.+   .+++-   ||  .+||++..+. ++.|.      ... .-..-.|+|.|.-++..++     |||+++  .+.
T Consensus      1239 sP~D---~LIln---dG--vLWDvR~~~a-Ih~FD------~ft-~~~~G~FHP~g~eVIINSE-----IwD~RT--F~l 1295 (1516)
T KOG1832|consen 1239 SPCD---TLILN---DG--VLWDVRIPEA-IHRFD------QFT-DYGGGGFHPSGNEVIINSE-----IWDMRT--FKL 1295 (1516)
T ss_pred             CCCc---ceEee---Cc--eeeeeccHHH-Hhhhh------hhe-ecccccccCCCceEEeech-----hhhhHH--HHH
Confidence            9987   34442   33  5899997643 22221      111 1112369999999988765     999997  666


Q ss_pred             cccccccccceeEEEEcCCCCEE
Q 009203          504 SQSIRAHQKRVFKAVWHYSHPLL  526 (540)
Q Consensus       504 ~~~~~~h~~~i~~l~~s~~~~~l  526 (540)
                      ++....-.  -..+.|+..|..+
T Consensus      1296 Lh~VP~Ld--qc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1296 LHSVPSLD--QCAVTFNSTGDVM 1316 (1516)
T ss_pred             HhcCcccc--ceEEEeccCccch
Confidence            66554322  2456677776644

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.46  E-value=7.2e-05  Score=68.03  Aligned_cols=191  Identities=15%  Similarity=0.126  Sum_probs=113.9

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEe-----CCceEEEEEcC-CCCCcceeecccccCCCCCCCCceeEEEecCCCeEE
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSA-----LDGVIRLWQLQ-SRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLF  290 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~-----~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  290 (540)
                      +.|.||      -.|||| |++|.+.-     ..|.|-|||.. .-..+..+        ..|.-....+.+.|||+.|+
T Consensus        50 RHFyGH------g~fs~d-G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~--------~s~GIGPHel~l~pDG~tLv  114 (305)
T PF07433_consen   50 RHFYGH------GVFSPD-GRLLYTTENDYETGRGVIGVYDAARGYRRIGEF--------PSHGIGPHELLLMPDGETLV  114 (305)
T ss_pred             CEEecC------EEEcCC-CCEEEEeccccCCCcEEEEEEECcCCcEEEeEe--------cCCCcChhhEEEcCCCCEEE
Confidence            445677      579996 88888864     35889999998 33333333        34444456899999999888


Q ss_pred             EEe-----e---------cCCCCCeEEEEecCCCCCceeEEeecC-CCCcccceeEEEEeCCCCCEEEEEecCCc-----
Q 009203          291 SAH-----T---------ADSGDSQISVLNLNKTKGRACVTFLDD-KPHVKGIINSIIFLPWENPCFATGGSDHA-----  350 (540)
Q Consensus       291 s~~-----~---------~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-----  350 (540)
                      ++.     .         -+..+..+.+.|..++.   .+....- ...|.-.|..+++.+ ++..++..-..|.     
T Consensus       115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~---ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~  190 (305)
T PF07433_consen  115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA---LLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAP  190 (305)
T ss_pred             EEcCCCccCcccCceecChhhcCCceEEEecCCCc---eeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccC
Confidence            871     0         01234455566666652   2222111 123556799999998 7766665544332     


Q ss_pred             --EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeeeeccCccEEEEeecCCC
Q 009203          351 --VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCD  427 (540)
Q Consensus       351 --i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  427 (540)
                        |-+++....-.......-....-...+-+|++++++.++++.+ ..+.+.+||..++..+...... .++.++..+.+
T Consensus       191 PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~  269 (305)
T PF07433_consen  191 PLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG  269 (305)
T ss_pred             CeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc
Confidence              3344433321100000000122457899999999998775554 5778999999999876554433 34455555554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=6.6e-05  Score=75.57  Aligned_cols=213  Identities=13%  Similarity=0.199  Sum_probs=135.1

Q ss_pred             EEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-----cEEEE
Q 009203          280 IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-----AVVLW  354 (540)
Q Consensus       280 ~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-----~i~iw  354 (540)
                      -+|++.+..++.|    +.+|.|.+.+-.    ...++.+....  .+.|..+.... ...+|++-+.|+     .|+||
T Consensus        29 sc~~s~~~~vvig----t~~G~V~~Ln~s----~~~~~~fqa~~--~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw   97 (933)
T KOG2114|consen   29 SCCSSSTGSVVIG----TADGRVVILNSS----FQLIRGFQAYE--QSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIW   97 (933)
T ss_pred             eEEcCCCceEEEe----eccccEEEeccc----ceeeehheecc--hhhhhHhhccc-CceEEEEEeecCCCCceEEEEe
Confidence            3567888899999    999998887654    23334444422  12344444433 446777776664     48999


Q ss_pred             ecCCCCCcccccee------e--cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC--C---CCeeeeeccCccEEEE
Q 009203          355 SERDAEDSWKPKAL------H--RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG--V---GRADFKHQIESKCMSV  421 (540)
Q Consensus       355 d~~~~~~~~~~~~~------~--~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~--~---~~~~~~~~~~~~~~~~  421 (540)
                      |++..+....+..+      .  ......++.+++.+.+-+.+++|-.+|.|..+.-+  .   .+....+....+++.+
T Consensus        98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL  177 (933)
T KOG2114|consen   98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL  177 (933)
T ss_pred             cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence            99764321112211      1  11245678899999999999999999999988532  1   2223446677888898


Q ss_pred             eecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC
Q 009203          422 LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN  501 (540)
Q Consensus       422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~  501 (540)
                      .+..++...  ++ ...-..|.+|.+.... +..     ..+..|...+.|.+|++...-+++++. ..+.+|+...  .
T Consensus       178 ~~~~d~~s~--lF-v~Tt~~V~~y~l~gr~-p~~-----~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~--~  245 (933)
T KOG2114|consen  178 ALRSDGKSV--LF-VATTEQVMLYSLSGRT-PSL-----KVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDG--R  245 (933)
T ss_pred             EEecCCcee--EE-EEecceeEEEEecCCC-cce-----eeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCC--c
Confidence            887776432  22 2234589999998544 221     134567778999999875554555544 4599999885  4


Q ss_pred             ccccccc-cccccee
Q 009203          502 KPSQSIR-AHQKRVF  515 (540)
Q Consensus       502 ~~~~~~~-~h~~~i~  515 (540)
                      .+-..+. +|...+.
T Consensus       246 ~~cfaf~~g~kk~~~  260 (933)
T KOG2114|consen  246 GPCFAFEVGEKKEML  260 (933)
T ss_pred             ceeeeecCCCeEEEE
Confidence            5555565 6655433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.44  E-value=1e-07  Score=91.95  Aligned_cols=198  Identities=19%  Similarity=0.195  Sum_probs=129.4

Q ss_pred             ceeEEEEeCCC-CCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeC----CCeEEEE
Q 009203          328 IINSIIFLPWE-NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGA----DKRIIGF  401 (540)
Q Consensus       328 ~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~----dg~i~iw  401 (540)
                      .+.|+++.... ..+++.|..+|.|-+-.++.....   ..-...++...+++++|++ |.+.|+.|-.    |..+.||
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccc---cceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence            36677766522 357888999999999988875531   1122255888999999987 5566666633    5679999


Q ss_pred             ECCCC--Cee----eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEE
Q 009203          402 DAGVG--RAD----FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSW  475 (540)
Q Consensus       402 d~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  475 (540)
                      |+.++  .+.    +.........+++|..+.   .++.+|.....+.++|++........        -.+..+..+..
T Consensus       135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~---klvlaGm~sr~~~ifdlRqs~~~~~s--------vnTk~vqG~tV  203 (783)
T KOG1008|consen  135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDT---KLVLAGMTSRSVHIFDLRQSLDSVSS--------VNTKYVQGITV  203 (783)
T ss_pred             ecccccCCCccccccccccccCccccccccCc---chhhcccccchhhhhhhhhhhhhhhh--------hhhhhccccee
Confidence            99876  221    111122333466666444   68899999999999999833211111        12335677888


Q ss_pred             cC-CCCEEEEEeCCCcEEEEeccCCCCccccccccccc----ceeEEEEcCCCC-EEEEEEcC-CcEEEEeC
Q 009203          476 SP-DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK----RVFKAVWHYSHP-LLISISSD-LNIGLHKI  540 (540)
Q Consensus       476 sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~----~i~~l~~s~~~~-~l~s~~~d-g~v~iw~l  540 (540)
                      +| .++|+++-. ||.|.+||....-..++..+.....    .+..++|+|... .+++...| ++|+.+++
T Consensus       204 dp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  204 DPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             cCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            88 788888776 9999999943211344544443333    489999999753 45555555 77888875

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.39  E-value=9.1e-05  Score=67.50  Aligned_cols=193  Identities=13%  Similarity=0.086  Sum_probs=112.8

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      +..+++++.++.+..||..+++...+.....         .+.... ...+..++.+    ..++.|..+|..+++....
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~---------~~~~~~-~~~~~~v~v~----~~~~~l~~~d~~tG~~~W~  101 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPG---------PISGAP-VVDGGRVYVG----TSDGSLYALDAKTGKVLWS  101 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEECSS---------CGGSGE-EEETTEEEEE----ETTSEEEEEETTTSCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEeeccc---------ccccee-eecccccccc----cceeeeEecccCCcceeee
Confidence            4456666899999999999998766664321         111112 2234556665    6778999999988843222


Q ss_pred             EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc------e-eEEEeccCCCE
Q 009203          316 VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA------V-MGVAGMQQKQI  388 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------v-~~l~~s~~~~~  388 (540)
                      ...... +... ......... .+..++.+..++.|..+|+.+|+.+|.... ....-...      + ..+.+. ++ .
T Consensus       102 ~~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~  175 (238)
T PF13360_consen  102 IYLTSS-PPAG-VRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVIS-DG-R  175 (238)
T ss_dssp             EEE-SS-CTCS-TB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECC-TT-E
T ss_pred             eccccc-cccc-cccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEE-CC-E
Confidence            111111 1111 112222222 467888888899999999999987555443 11011111      1 223333 44 7


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          389 VLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       389 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      ++.++.++.+..+|+.+++.+.... ....... ....+   ..++.++.++.|..||+.+++..
T Consensus       176 v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~-~~~~~---~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  176 VYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSL-PSVDG---GTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EEEECCTSSEEEEETTTTEEEEEEC-SS-ECEC-EECCC---TEEEEEETTTEEEEEETTTTEEE
T ss_pred             EEEEcCCCeEEEEECCCCCEEEEec-CCCccCC-ceeeC---CEEEEEeCCCEEEEEECCCCCEE
Confidence            7777777754444999998765333 2222221 22322   36666668999999999988753

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.39  E-value=0.00015  Score=72.27  Aligned_cols=221  Identities=13%  Similarity=0.094  Sum_probs=123.6

Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe--C----------------CCCCEEE-EE
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL--P----------------WENPCFA-TG  345 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p----------------~~~~~l~-s~  345 (540)
                      ||++|+.-   +-.+..|...+++..+..+.+..-..     ..+.+++|.  |                .+|..+. +.
T Consensus       140 dGr~~fin---dk~n~Rvari~l~~~~~~~i~~iPn~-----~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~  211 (635)
T PRK02888        140 DGRYLFIN---DKANTRVARIRLDVMKCDKITELPNV-----QGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPK  211 (635)
T ss_pred             ceeEEEEe---cCCCcceEEEECccEeeceeEeCCCc-----cCccccCccccCCccEEEeCcccccccCCCCCEeeccc
Confidence            67788875   12466677777766533233322221     113333332  3                0343332 22


Q ss_pred             ecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC----CeEEEEECCCCCeeeeeccCccEEEE
Q 009203          346 GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD----KRIIGFDAGVGRADFKHQIESKCMSV  421 (540)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~  421 (540)
                      -..+.+.+.|..+.+..+++.      -.+....++++++|.++++.+.+    .++...+.....           ..+
T Consensus       212 ey~~~vSvID~etmeV~~qV~------Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-----------~~v  274 (635)
T PRK02888        212 KYRSLFTAVDAETMEVAWQVM------VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-----------WVV  274 (635)
T ss_pred             ceeEEEEEEECccceEEEEEE------eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc-----------eEE
Confidence            233556777777655432222      12344667889999999887632    123333332211           222


Q ss_pred             eecCCC-----CCceEEEEEcCCCeEEEEECCC----CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcE
Q 009203          422 LPNPCD-----FNLFMVQTGTPGRQLRLYDIRL----RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVI  491 (540)
Q Consensus       422 ~~~~~~-----~~~~~l~~~~~dg~v~i~d~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i  491 (540)
                      .|+...     .++.+...  .++.|.+.|..+    +......+.       -......+.++|||+++++++ .+.+|
T Consensus       275 vfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-------VGKsPHGV~vSPDGkylyVanklS~tV  345 (635)
T PRK02888        275 VFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-------VPKNPHGVNTSPDGKYFIANGKLSPTV  345 (635)
T ss_pred             EEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-------CCCCccceEECCCCCEEEEeCCCCCcE
Confidence            232210     01133333  367899999987    222232221       234678899999999977655 58999


Q ss_pred             EEEeccCCCC----------cccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          492 HLFDIRYSAN----------KPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       492 ~iwd~~~~~~----------~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .|+|+.....          ..+....- .......+|+++|....|.-.|..|..|++
T Consensus       346 SVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        346 TVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             EEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence            9999986210          01222222 223456789999998999999999999985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.37  E-value=0.00042  Score=67.51  Aligned_cols=89  Identities=17%  Similarity=0.263  Sum_probs=69.8

Q ss_pred             EEEEECCCCCe----eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEE
Q 009203          398 IIGFDAGVGRA----DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ  473 (540)
Q Consensus       398 i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~  473 (540)
                      -++|+...++.    +........+.+.+++|+.   ..++.|+.||.|.+||...+.....         ...-.++.+
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E---~kLvlGC~DgSiiLyD~~~~~t~~~---------ka~~~P~~i  305 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE---DKLVLGCEDGSIILYDTTRGVTLLA---------KAEFIPTLI  305 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCccc---ceEEEEecCCeEEEEEcCCCeeeee---------eecccceEE
Confidence            35566655443    3346677889999999988   6899999999999999986643221         223457889


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          474 SWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       474 ~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      +|+|+|.++++|+..|.+.+||+.-
T Consensus       306 aWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  306 AWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEcCCCcEEEEEcCCceEEEEEeec
Confidence            9999999999999999999999874

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.34  E-value=0.0021  Score=62.75  Aligned_cols=72  Identities=17%  Similarity=0.167  Sum_probs=61.3

Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ...+.|.+++++|+...|+.|+.||.|.+||....    +..+..+.-.++.++|+|+|.++++|+.-|.+.+||+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC----eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            45678999999999999999999999999999862    2223334456789999999999999999999999995

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=0.00021  Score=72.08  Aligned_cols=208  Identities=13%  Similarity=0.133  Sum_probs=123.0

Q ss_pred             EecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCCCCC-eEEEEecC
Q 009203          231 LNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDS-QISVLNLN  308 (540)
Q Consensus       231 ~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~-~i~vwd~~  308 (540)
                      |++ ++..++.|+.+|.|.+.+-.- +....+        ..+...+...-|.-++ .+|++....+..+. .|+||+++
T Consensus        31 ~~s-~~~~vvigt~~G~V~~Ln~s~-~~~~~f--------qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   31 CSS-STGSVVIGTADGRVVILNSSF-QLIRGF--------QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             EcC-CCceEEEeeccccEEEecccc-eeeehh--------eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            455 577899999999988877532 111222        2333332223334444 56776622111123 69999997


Q ss_pred             CCCC---ceeE---Eeec-CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          309 KTKG---RACV---TFLD-DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       309 ~~~~---~~~~---~~~~-~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      .-+.   +.++   +.+. ..+....++.+++.+. +-..+|.|-.+|.|..+.-+--.... .+.........+|++++
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrg-sr~~~~~~~~~pITgL~  178 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRG-SRQDYSHRGKEPITGLA  178 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccc-cceeeeccCCCCceeeE
Confidence            5422   3444   3333 1222356788999998 78899999999999888533111100 11111223567999999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      +..++..++.+.....|.+|.+....+...  ...+....+..+++...  .+++++  +..+.+||....+...
T Consensus       179 ~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~--qfIca~--~e~l~fY~sd~~~~cf  249 (933)
T KOG2114|consen  179 LRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY--QFICAG--SEFLYFYDSDGRGPCF  249 (933)
T ss_pred             EecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc--cEEEec--CceEEEEcCCCcceee
Confidence            988888744444455799999985442222  34455666777776542  244443  4589999998665433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.32  E-value=0.00022  Score=74.70  Aligned_cols=204  Identities=10%  Similarity=0.084  Sum_probs=128.8

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      .+.|.++.|.-| +.-++.+..+|.|.+-|..+..  ..+..       .-...|.+++|+||+..++..    +..+++
T Consensus        68 d~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~--~eivg-------~vd~GI~aaswS~Dee~l~li----T~~~tl  133 (1265)
T KOG1920|consen   68 DDEIVSVQFLAD-TNSICVITALGDIILVDPETLE--LEIVG-------NVDNGISAASWSPDEELLALI----TGRQTL  133 (1265)
T ss_pred             CcceEEEEEecc-cceEEEEecCCcEEEEcccccc--eeeee-------eccCceEEEeecCCCcEEEEE----eCCcEE
Confidence            378999999986 7778888889999998887654  22222       224669999999999999988    777777


Q ss_pred             EEEec----CCCCC----------------ceeEEeecCCCC------------------cccceeEEEEeCCCCCEEEE
Q 009203          303 SVLNL----NKTKG----------------RACVTFLDDKPH------------------VKGIINSIIFLPWENPCFAT  344 (540)
Q Consensus       303 ~vwd~----~~~~~----------------~~~~~~~~~~~~------------------~~~~v~~~~~~p~~~~~l~s  344 (540)
                      .+-+-    -..+.                .+..+.+.+..+                  ..+.=+.|.|-- ||.++++
T Consensus       134 l~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAV  212 (1265)
T KOG1920|consen  134 LFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAV  212 (1265)
T ss_pred             EEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEE
Confidence            66433    11100                000111111000                  011123588887 9999988


Q ss_pred             Ee----cC-CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC---CCeEEEEECCC---CCeeeeec
Q 009203          345 GG----SD-HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA---DKRIIGFDAGV---GRADFKHQ  413 (540)
Q Consensus       345 ~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~iwd~~~---~~~~~~~~  413 (540)
                      ..    .+ ..|++||-+ +..    .... ....+.-.+++|-|.|..+++-..   |+.|.+|.-+.   |.......
T Consensus       213 s~~~~~~~~RkirV~drE-g~L----ns~s-e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p  286 (1265)
T KOG1920|consen  213 SFVESETGTRKIRVYDRE-GAL----NSTS-EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP  286 (1265)
T ss_pred             EEEeccCCceeEEEeccc-chh----hccc-CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc
Confidence            32    23 789999988 432    1111 112344568999999999988543   55788887543   33333333


Q ss_pred             cCcc-EEEEeecCCCCCceEEEE---EcCCCeEEEEECCCC
Q 009203          414 IESK-CMSVLPNPCDFNLFMVQT---GTPGRQLRLYDIRLR  450 (540)
Q Consensus       414 ~~~~-~~~~~~~~~~~~~~~l~~---~~~dg~v~i~d~~~~  450 (540)
                      .+.. +..+.|+.++   ..|++   ......|++|-+.+.
T Consensus       287 ~de~~ve~L~Wns~s---diLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  287 LDEKEVEELAWNSNS---DILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ccccchheeeecCCC---CceeeeecccccceEEEEEecCe
Confidence            3433 8899999877   35555   444555999988754

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.28  E-value=0.00067  Score=60.90  Aligned_cols=207  Identities=12%  Similarity=0.100  Sum_probs=111.5

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +.+=.+.+..|+|+||++.++++....+.|...+.. ++.+.++...      + .+..-+|++..++.++++.    -.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~------g-~~D~EgI~y~g~~~~vl~~----Er   84 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD------G-FGDYEGITYLGNGRYVLSE----ER   84 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S------S--SSEEEEEE-STTEEEEEE----TT
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC------C-CCCceeEEEECCCEEEEEE----cC
Confidence            345556799999999877788888888888888864 5555554321      2 2346789998888777776    67


Q ss_pred             CCeEEEEecCCCCCc---eeEEeec--CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC--CCCccccceee--
Q 009203          299 DSQISVLNLNKTKGR---ACVTFLD--DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD--AEDSWKPKALH--  369 (540)
Q Consensus       299 d~~i~vwd~~~~~~~---~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~--  369 (540)
                      ++.+.++++......   .....+.  ....+...+-.++|.| .++.|+.+-...-..+|.+..  ....  .....  
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~--~~~~~~~  161 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFD--LFVSDDQ  161 (248)
T ss_dssp             TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS----EEEE-H
T ss_pred             CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccc--eeecccc
Confidence            899999998543211   1112221  2112334589999999 666666666666666776654  1110  11110  


Q ss_pred             ----cccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeeccC----------ccEEEEeecCCCCCceEEE
Q 009203          370 ----RNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQIE----------SKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       370 ----~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~  434 (540)
                          .......+.+++++|. |.+++....+..|..+| ..|+.+......          .+.-.+++++++    .|.
T Consensus       162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G----~LY  236 (248)
T PF06977_consen  162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG----NLY  236 (248)
T ss_dssp             HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT------EE
T ss_pred             ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC----CEE
Confidence                1224456889999885 55667777788899999 557765543332          245678888876    333


Q ss_pred             EEcCCCeEEEE
Q 009203          435 TGTPGRQLRLY  445 (540)
Q Consensus       435 ~~~~dg~v~i~  445 (540)
                      ..+.-+..++|
T Consensus       237 IvsEpNlfy~f  247 (248)
T PF06977_consen  237 IVSEPNLFYRF  247 (248)
T ss_dssp             EEETTTEEEEE
T ss_pred             EEcCCceEEEe
Confidence            33344444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.22  E-value=0.0011  Score=67.23  Aligned_cols=205  Identities=8%  Similarity=0.005  Sum_probs=114.0

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc--eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP--EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V--~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      .+..++.++.|.-.|..+++...++.......  .....+  ..++.. ++..++.+    +.++.|.-+|..+++.   
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~--~~~~~~~~~g~~~~-~~~~V~v~----~~~g~v~AlD~~TG~~---  132 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPAD--RGCCDVVNRGVAYW-DPRKVFFG----TFDGRLVALDAETGKQ---  132 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCcc--ccccccccCCcEEc-cCCeEEEe----cCCCeEEEEECCCCCE---
Confidence            45566778899999998888776654322100  000001  111221 22567777    7899999999998843   


Q ss_pred             EEeecCCCC--cccce-eEEEEeCCCCCEEEEEe---------cCCcEEEEecCCCCCccccceeeccc-----------
Q 009203          316 VTFLDDKPH--VKGII-NSIIFLPWENPCFATGG---------SDHAVVLWSERDAEDSWKPKALHRNL-----------  372 (540)
Q Consensus       316 ~~~~~~~~~--~~~~v-~~~~~~p~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~-----------  372 (540)
                      +-.......  ....+ .+..+.  + .+++.++         .+|.+.-+|..+++..|+........           
T Consensus       133 ~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~  209 (488)
T cd00216         133 VWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQ  209 (488)
T ss_pred             eeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcc
Confidence            222221110  00001 112222  2 3444443         36789999999999877654421100           


Q ss_pred             ---CC-cce-eEEEeccCCCEEEEEeCCC------------------eEEEEECCCCCeeeeeccCcc-EE--EE----e
Q 009203          373 ---HS-SAV-MGVAGMQQKQIVLSAGADK------------------RIIGFDAGVGRADFKHQIESK-CM--SV----L  422 (540)
Q Consensus       373 ---~~-~~v-~~l~~s~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~-~~--~~----~  422 (540)
                         +. ..+ ...++.+.+..++.++.++                  .|.-+|..+|+....++.... ..  ..    .
T Consensus       210 ~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~  289 (488)
T cd00216         210 MWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS  289 (488)
T ss_pred             eecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe
Confidence               00 011 1234455567788887665                  799999999999877553211 00  00    0


Q ss_pred             ec----CCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          423 PN----PCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       423 ~~----~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      ..    -++....+++.++.+|.+..+|..+++....
T Consensus       290 ~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         290 LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             EEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence            00    1111113678888999999999999886543

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.15  E-value=0.0023  Score=64.79  Aligned_cols=249  Identities=10%  Similarity=0.053  Sum_probs=136.7

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc-eeEEEecCCCeEEEEeecC-----CCCCeEEEEecCCC
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP-EDIAWHPQGNSLFSAHTAD-----SGDSQISVLNLNKT  310 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V-~~~~~~~~~~~l~s~~~~~-----~~d~~i~vwd~~~~  310 (540)
                      ..++.++.+|.|.-+|..+++...+........   ....+ .+..+.  +..++.+...+     ..++.|..+|..++
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~---~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG  185 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP---PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETG  185 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcC---cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCC
Confidence            567778889999999999998776664321100   00001 112222  23454541000     13678899999888


Q ss_pred             CCceeEEeecCCC----C----------cccce-eEEEEeCCCCCEEEEEecCC------------------cEEEEecC
Q 009203          311 KGRACVTFLDDKP----H----------VKGII-NSIIFLPWENPCFATGGSDH------------------AVVLWSER  357 (540)
Q Consensus       311 ~~~~~~~~~~~~~----~----------~~~~v-~~~~~~p~~~~~l~s~~~dg------------------~i~iwd~~  357 (540)
                      +............    .          -...+ ...++.+ .+.+++.++.++                  .|.-+|..
T Consensus       186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~  264 (488)
T cd00216         186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD  264 (488)
T ss_pred             ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC
Confidence            5433332211100    0          00111 1244554 456777776555                  69999999


Q ss_pred             CCCCccccceeecc-----cCCcce-eEEEeccCCC---EEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCC
Q 009203          358 DAEDSWKPKALHRN-----LHSSAV-MGVAGMQQKQ---IVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDF  428 (540)
Q Consensus       358 ~~~~~~~~~~~~~~-----~~~~~v-~~l~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (540)
                      +++..|..+.....     ....++ ..+. .-+|.   .++.++.+|.+..+|.++|+.+.......  ..+..+| + 
T Consensus       265 tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~-~-  339 (488)
T cd00216         265 TGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP-G-  339 (488)
T ss_pred             CCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC-c-
Confidence            99987765432110     011111 1111 01333   67888899999999999999887654321  1122233 1 


Q ss_pred             CceEEEEE------------------cCCCeEEEEECCCCcceeeeeccccccCccc------cCe--EEEEEcCCCCEE
Q 009203          429 NLFMVQTG------------------TPGRQLRLYDIRLRQTEIHAFGWKQESSESQ------SAL--INQSWSPDGLYI  482 (540)
Q Consensus       429 ~~~~l~~~------------------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~------~~v--~~~~~sp~g~~l  482 (540)
                         .++.+                  ..+|.+.-+|+.+++..-..-     ...+.      .+.  ..+..  .+..|
T Consensus       340 ---~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~-----~~~~~~~~~~g~~~~~~~~~~--~g~~v  409 (488)
T cd00216         340 ---LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR-----EGTIRDSWNIGFPHWGGSLAT--AGNLV  409 (488)
T ss_pred             ---eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee-----CCccccccccCCcccCcceEe--cCCeE
Confidence               22221                  246788888988887544321     11000      111  11222  56788


Q ss_pred             EEEeCCCcEEEEeccCCCCccccccc
Q 009203          483 TSGSADPVIHLFDIRYSANKPSQSIR  508 (540)
Q Consensus       483 ~sg~~dg~i~iwd~~~~~~~~~~~~~  508 (540)
                      ++++.||.|+.+|..+  ++.+-.++
T Consensus       410 ~~g~~dG~l~ald~~t--G~~lW~~~  433 (488)
T cd00216         410 FAGAADGYFRAFDATT--GKELWKFR  433 (488)
T ss_pred             EEECCCCeEEEEECCC--CceeeEEE
Confidence            9999999999999998  66655554

The alignment model contains an 8-bladed beta-propeller.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.13  E-value=0.005  Score=58.13  Aligned_cols=276  Identities=10%  Similarity=0.046  Sum_probs=122.5

Q ss_pred             EEecCCCcEEEEEeCCceEEEE--EcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203          230 SLNPVNEQLFVTSALDGVIRLW--QLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL  307 (540)
Q Consensus       230 ~~spd~~~~l~tg~~dg~v~iw--~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~  307 (540)
                      +|.+|+.++|+.+..||.-.+|  |+.+++. .++..       +-........++++++.++..    ..+..|.-.|+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i-~QLTd-------g~g~~~~g~~~s~~~~~~~Yv----~~~~~l~~vdL  109 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEI-TQLTD-------GPGDNTFGGFLSPDDRALYYV----KNGRSLRRVDL  109 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EE-EE----------SS-B-TTT-EE-TTSSEEEEE----ETTTEEEEEET
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEE-EECcc-------CCCCCccceEEecCCCeEEEE----ECCCeEEEEEC
Confidence            5677755677777767765555  5665542 12211       111223356778888887765    56678899999


Q ss_pred             CCCCCceeEEeecCCCCcccceeEEEEe-CCCCCEEEEEec----------------------CCcEEEEecCCCCCccc
Q 009203          308 NKTKGRACVTFLDDKPHVKGIINSIIFL-PWENPCFATGGS----------------------DHAVVLWSERDAEDSWK  364 (540)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~  364 (540)
                      .+.+. ..+..+.     .+.+-...|. ..++..++-.-.                      ...|.-.|+.+++    
T Consensus       110 ~T~e~-~~vy~~p-----~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~----  179 (386)
T PF14583_consen  110 DTLEE-RVVYEVP-----DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE----  179 (386)
T ss_dssp             TT--E-EEEEE-------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------
T ss_pred             CcCcE-EEEEECC-----cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc----
Confidence            98632 2333332     2344445564 225555443211                      2345556777776    


Q ss_pred             cceeecccCCcceeEEEeccCC-CEEEEEeC---CC-eEEEEECCC--CCe--eeeeccCccEEEEeecCCCCCceEEEE
Q 009203          365 PKALHRNLHSSAVMGVAGMQQK-QIVLSAGA---DK-RIIGFDAGV--GRA--DFKHQIESKCMSVLPNPCDFNLFMVQT  435 (540)
Q Consensus       365 ~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~---dg-~i~iwd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~  435 (540)
                      ...+..  -...+..+.|+|.. .+|+.|..   +. .-|||-+++  ...  +........+.-=.|.|++....+..-
T Consensus       180 ~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~  257 (386)
T PF14583_consen  180 RKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY  257 (386)
T ss_dssp             EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred             eeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence            344433  45667889999954 45555544   22 135564433  222  222333334444567888754322211


Q ss_pred             --EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC----------------cEEEEecc
Q 009203          436 --GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP----------------VIHLFDIR  497 (540)
Q Consensus       436 --~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg----------------~i~iwd~~  497 (540)
                        +..+..|.-+|+.+++.....         .......+..++||++++-=+.|.                .|+++++.
T Consensus       258 ~~~~~~~~i~~~d~~t~~~~~~~---------~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~  328 (386)
T PF14583_consen  258 TPGGQDFWIAGYDPDTGERRRLM---------EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE  328 (386)
T ss_dssp             ETTT--EEEEEE-TTT--EEEEE---------EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred             cCCCCceEEEeeCCCCCCceEEE---------eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence              222445777888776542211         111344566688998887544432                45667776


Q ss_pred             CCCCcccc-------ccccccc-ceeEEEEcCCCCEE-EEEEcCCcEEEE
Q 009203          498 YSANKPSQ-------SIRAHQK-RVFKAVWHYSHPLL-ISISSDLNIGLH  538 (540)
Q Consensus       498 ~~~~~~~~-------~~~~h~~-~i~~l~~s~~~~~l-~s~~~dg~v~iw  538 (540)
                      ......+.       .+.++.. .=....|+|||+.+ +++...|...||
T Consensus       329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence            42111111       1111111 12467899999865 555666776665

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.13  E-value=2.9e-05  Score=78.50  Aligned_cols=158  Identities=13%  Similarity=0.086  Sum_probs=112.9

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC-----CCC
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD-----SGD  299 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~-----~~d  299 (540)
                      .|+-++.+   ++++.+|...|+|-+-|..+.+.+.++        ..|.+.|.++.  -.|+.|+++....     ..|
T Consensus       179 ~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~--------~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D  245 (1118)
T KOG1275|consen  179 GVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTF--------DAHSGSISDFD--VQGNLLITCGYSMRRYNLAMD  245 (1118)
T ss_pred             ceEEEEec---CcEEEeecccceEEeecCCcCceeeee--------eccccceeeee--ccCCeEEEeeccccccccccc
Confidence            46666663   679999999999999999998888877        47888776654  4688898882211     136


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      .-|+|||++.......+...      .+ ..-+.|+|.-...+++++..|...+-|..+-.... ............+..
T Consensus       246 ~FvkVYDLRmmral~PI~~~------~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~  317 (1118)
T KOG1275|consen  246 PFVKVYDLRMMRALSPIQFP------YG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISA  317 (1118)
T ss_pred             chhhhhhhhhhhccCCcccc------cC-chhhhhcccccceEEEEecccceeeccccccCCCc-cceeEEccCCCccee
Confidence            67899999976432333322      22 35678899667889999999999999943321100 111222224556999


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEEC
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDA  403 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~  403 (540)
                      ++++++|+.++.|..+|.|.+|--
T Consensus       318 fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  318 FDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EEecCCCceEEEecccCcEeeecC
Confidence            999999999999999999999983

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.00  E-value=0.00048  Score=67.63  Aligned_cols=166  Identities=11%  Similarity=0.080  Sum_probs=87.6

Q ss_pred             cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC
Q 009203          327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG  406 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~  406 (540)
                      -.+..+.++| +++.++.++ ||...||......      ..    ..+....++|.+.+ .+++-...+.|.++.--+.
T Consensus        33 ~~p~~ls~np-ngr~v~V~g-~geY~iyt~~~~r------~k----~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   33 IYPQSLSHNP-NGRFVLVCG-DGEYEIYTALAWR------NK----AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             S--SEEEE-T-TSSEEEEEE-TTEEEEEETTTTE------EE----EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE
T ss_pred             cCCeeEEECC-CCCEEEEEc-CCEEEEEEccCCc------cc----ccCceeEEEEecCc-cEEEEECCCeEEEEEcCcc
Confidence            3478999999 999888855 6888888733321      11    23556788998854 4666666888999733333


Q ss_pred             CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203          407 RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                      ........+..+..+..   |   .+|+..+. +.|.+||..+++.....         .-.+|..+.|+++|.+++..+
T Consensus       100 ~~~k~i~~~~~~~~If~---G---~LL~~~~~-~~i~~yDw~~~~~i~~i---------~v~~vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen  100 EVVKSIKLPFSVEKIFG---G---NLLGVKSS-DFICFYDWETGKLIRRI---------DVSAVKYVIWSDDGELVALVT  163 (443)
T ss_dssp             -TT-----SS-EEEEE----S---SSEEEEET-TEEEEE-TTT--EEEEE---------SS-E-EEEEE-TTSSEEEEE-
T ss_pred             ccceEEcCCcccceEEc---C---cEEEEECC-CCEEEEEhhHcceeeEE---------ecCCCcEEEEECCCCEEEEEe
Confidence            33223344444455544   2   35555544 48999999988754432         112488999999999999987


Q ss_pred             CCCcEEEEeccCC-------CC--cccccccccccceeEEEEcCC
Q 009203          487 ADPVIHLFDIRYS-------AN--KPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       487 ~dg~i~iwd~~~~-------~~--~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      .+ .+.|++.+..       ++  ..+..+..-...|.+.+|..+
T Consensus       164 ~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  164 KD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             CC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence            55 5888877631       00  023333322457888888655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.96  E-value=0.0024  Score=61.99  Aligned_cols=251  Identities=12%  Similarity=0.094  Sum_probs=127.1

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcc------ee-------------------ecccc----------cC
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGA------SL-------------------LSTTD----------CL  269 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~------~~-------------------~~~~~----------~~  269 (540)
                      .|+.+.|+++ ..-|+.|...|.|.||.....+...      ..                   .....          ..
T Consensus         3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5899999996 6778999999999999765432211      00                   00000          00


Q ss_pred             CCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEe--ecC---CCCcccceeEEEEeC----CCC-
Q 009203          270 SPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTF--LDD---KPHVKGIINSIIFLP----WEN-  339 (540)
Q Consensus       270 ~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~--~~~---~~~~~~~v~~~~~~p----~~~-  339 (540)
                      .....++|++++.+.- -+++.|    ..+|.+.|.|++..   ..+..  +..   .......|+++.|.-    .|+ 
T Consensus        82 ~~~~~g~vtal~~S~i-GFvaig----y~~G~l~viD~RGP---avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDI-GFVAIG----YESGSLVVIDLRGP---AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             E---S-SEEEEEE-BT-SEEEEE----ETTSEEEEEETTTT---EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             eeccCCcEeEEecCCC-cEEEEE----ecCCcEEEEECCCC---eEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            0123678999999744 488998    89999999999754   33322  111   112345688888861    122 


Q ss_pred             --CEEEEEecCCcEEEEecC-CCCCccccceeecc-cCCcceeEEE-eccC-C-------------------CEEEEEeC
Q 009203          340 --PCFATGGSDHAVVLWSER-DAEDSWKPKALHRN-LHSSAVMGVA-GMQQ-K-------------------QIVLSAGA  394 (540)
Q Consensus       340 --~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~-~~~~~v~~l~-~s~~-~-------------------~~l~~~~~  394 (540)
                        -.+++|+..|.+.+|.+- .....+........ .+.+.|..+. |+.+ |                   ..++....
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              468889999999999875 22222222222211 3556666555 2211 0                   12344444


Q ss_pred             CCeEEEEECCCCCeeeeeccC-ccEEEEeecC--CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeE
Q 009203          395 DKRIIGFDAGVGRADFKHQIE-SKCMSVLPNP--CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALI  471 (540)
Q Consensus       395 dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~  471 (540)
                      +..++++..-+.+........ ..+..+.+-+  ....+..|++-..+|.|++|.+...+...... ..  .......+.
T Consensus       234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~-l~--~~~d~~~~~  310 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS-LP--PPLDSRRLS  310 (395)
T ss_dssp             SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE--S--S---HHHHT
T ss_pred             ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc-CC--Ccccccccc
Confidence            668999999888776554422 2333333321  11122578888899999999998766433221 10  111222344


Q ss_pred             EEEEcCCCCEEEEEeC
Q 009203          472 NQSWSPDGLYITSGSA  487 (540)
Q Consensus       472 ~~~~sp~g~~l~sg~~  487 (540)
                      ..+++++|..++-.+.
T Consensus       311 ~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  311 SSSISRNGDIFYWTGP  326 (395)
T ss_dssp             T-EE-TTS-EEEE-SS
T ss_pred             ccEECCCCCEEEEeCc
Confidence            5677889987776643

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.94  E-value=0.00065  Score=67.87  Aligned_cols=220  Identities=9%  Similarity=0.020  Sum_probs=127.5

Q ss_pred             EecCCCcEE-EEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC----CeEEEE
Q 009203          231 LNPVNEQLF-VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD----SQISVL  305 (540)
Q Consensus       231 ~spd~~~~l-~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d----~~i~vw  305 (540)
                      ++|| |+.+ .+.-..+.+.+.|.++.+...++....         ....++++++|+++++.    +.+    .++...
T Consensus       200 lpnD-Gk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg---------npd~v~~spdGk~afvT----syNsE~G~tl~em  265 (635)
T PRK02888        200 LPND-GKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG---------NLDNVDTDYDGKYAFST----CYNSEEGVTLAEM  265 (635)
T ss_pred             cCCC-CCEeecccceeEEEEEEECccceEEEEEEeCC---------CcccceECCCCCEEEEe----ccCcccCcceeee
Confidence            4555 4433 334455778888888776655554321         23468899999999887    422    223333


Q ss_pred             ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC----CCCccccceeecccCCcceeEEE
Q 009203          306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD----AEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      +..+.   ..+..+..     ..+  -++.+ +|++...  .++.|.+.|..+    +.     ..+..-.-......+.
T Consensus       266 ~a~e~---d~~vvfni-----~~i--ea~vk-dGK~~~V--~gn~V~VID~~t~~~~~~-----~v~~yIPVGKsPHGV~  327 (635)
T PRK02888        266 MAAER---DWVVVFNI-----ARI--EEAVK-AGKFKTI--GGSKVPVVDGRKAANAGS-----ALTRYVPVPKNPHGVN  327 (635)
T ss_pred             ccccC---ceEEEEch-----HHH--HHhhh-CCCEEEE--CCCEEEEEECCccccCCc-----ceEEEEECCCCccceE
Confidence            32211   11111110     000  02334 6666555  257899999987    22     1111122445678899


Q ss_pred             eccCCCEEEEEeC-CCeEEEEECCCCCe------------eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          382 GMQQKQIVLSAGA-DKRIIGFDAGVGRA------------DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       382 ~s~~~~~l~~~~~-dg~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      ++|||+++++++. +.++.++|+.+.+.            ......+.......|++.+   ....+-.-|..|..||+.
T Consensus       328 vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G---~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        328 TSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRG---NAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             ECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCC---CEEEeEeecceeEEEehH
Confidence            9999999887665 88999999987553            2334445566677788776   467777889999999987


Q ss_pred             CC------c---ceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203          449 LR------Q---TEIHAFGWKQESSESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       449 ~~------~---~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                      ..      +   ..+..+. .....+|.....+=.-.|||+||++..
T Consensus       405 ~a~~~~~g~~~~~v~~k~d-V~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        405 AAIRAYKGEKVDPIVQKLD-VHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             HHHHHhccccCCcceeccc-CCCccceeeecCCCcCCCCCCEEEEcc
Confidence            61      1   1111110 112234443333334567888888763

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.94  E-value=0.0019  Score=63.38  Aligned_cols=187  Identities=17%  Similarity=0.152  Sum_probs=108.0

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEE-EecCCc--EE
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFAT-GGSDHA--VV  352 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~dg~--i~  352 (540)
                      .+..-+|+|++..++...........+.++|++++....... +.      +.-...+|+| +|+.|+. ...||.  |+
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~------g~~~~P~fsp-DG~~l~f~~~rdg~~~iy  265 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FN------GNNGAPAFSP-DGSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cC------CccCCccCCC-CCCEEEEEECCCCCccEE
Confidence            356678999999766653322233679999999885533333 22      3345678999 7766654 455665  66


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-C--eEEEEECCCCCeeeeeccCccEEEEeecCCCCC
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-K--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFN  429 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (540)
                      ++|+.++..    ..+..  ..+.-..=.|+|||+.++..+.. |  .|.++|...+..............-.++|++  
T Consensus       266 ~~dl~~~~~----~~Lt~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG--  337 (425)
T COG0823         266 LMDLDGKNL----PRLTN--GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDG--  337 (425)
T ss_pred             EEcCCCCcc----eeccc--CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCC--
Confidence            678877662    22221  12222356789999998877653 3  4777777766553332222333366678877  


Q ss_pred             ceEEEEEc-CCCe--EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC
Q 009203          430 LFMVQTGT-PGRQ--LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA  487 (540)
Q Consensus       430 ~~~l~~~~-~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~  487 (540)
                       .+++..+ .+|.  |.++|+.++.. ...+       .+......-+|.++|+.+...+.
T Consensus       338 -~~i~~~~~~~g~~~i~~~~~~~~~~-~~~l-------t~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         338 -DKIVFESSSGGQWDIDKNDLASGGK-IRIL-------TSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             -CEEEEEeccCCceeeEEeccCCCCc-EEEc-------cccccCCCCCcCCCCceEEEecc
Confidence             4444443 3444  66666655542 1111       11222334578888887765543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.92  E-value=0.0049  Score=57.52  Aligned_cols=231  Identities=14%  Similarity=0.040  Sum_probs=132.5

Q ss_pred             EEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC
Q 009203          280 IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA  359 (540)
Q Consensus       280 ~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~  359 (540)
                      -.|.++...|+-+   +-..+.|.-|+..++.    ...+..    .+.+.++..-. .+..|+++.  ..+.+++..++
T Consensus        30 P~w~~~~~~L~w~---DI~~~~i~r~~~~~g~----~~~~~~----p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~   95 (307)
T COG3386          30 PVWDPDRGALLWV---DILGGRIHRLDPETGK----KRVFPS----PGGFSSGALID-AGGRLIACE--HGVRLLDPDTG   95 (307)
T ss_pred             ccCcCCCCEEEEE---eCCCCeEEEecCCcCc----eEEEEC----CCCcccceeec-CCCeEEEEc--cccEEEeccCC
Confidence            4567777744443   2778899999988652    222221    22345554444 444555543  34677777555


Q ss_pred             CCccccceeecccCCcceeEEEeccCCCEEEEEeC-----------CCeEEEEECCCCCeeeeecc-CccEEEEeecCCC
Q 009203          360 EDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-----------DKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCD  427 (540)
Q Consensus       360 ~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~  427 (540)
                      ..................+.+...|+|.+.++...           -|.|+.+|. .+..+..... -.....++|+|++
T Consensus        96 ~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg  174 (307)
T COG3386          96 GKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDG  174 (307)
T ss_pred             ceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCC
Confidence            42111111111122355678888899887775443           134555665 3444433333 4556789999998


Q ss_pred             CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-cEEEEeccCCCCccccc
Q 009203          428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-VIHLFDIRYSANKPSQS  506 (540)
Q Consensus       428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-~i~iwd~~~~~~~~~~~  506 (540)
                      .  .++++-+..+.|.-|++....................+..-.++...+|.+-+++..+| .|.+|+.+   ++++..
T Consensus       175 ~--tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd---G~l~~~  249 (307)
T COG3386         175 K--TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD---GKLLGE  249 (307)
T ss_pred             C--EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC---CcEEEE
Confidence            4  34555566688999888631100000000001222445667788888898876555554 89999988   677777


Q ss_pred             ccccccceeEEEEc-CCCCEEEEEE
Q 009203          507 IRAHQKRVFKAVWH-YSHPLLISIS  530 (540)
Q Consensus       507 ~~~h~~~i~~l~~s-~~~~~l~s~~  530 (540)
                      +......+++++|- ++.+.|...+
T Consensus       250 i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         250 IKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EECCCCCCccceEeCCCcCEEEEEe
Confidence            77666778899995 4455444433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.92  E-value=0.016  Score=53.94  Aligned_cols=239  Identities=13%  Similarity=0.094  Sum_probs=129.3

Q ss_pred             CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          235 NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       235 ~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      .++.|+.|..+| +.+++..........         .+...|..+...++-+.|++-     .|+.+.++++..-....
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i---------~~~~~I~ql~vl~~~~~llvL-----sd~~l~~~~L~~l~~~~   70 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI---------LKLSSITQLSVLPELNLLLVL-----SDGQLYVYDLDSLEPVS   70 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeE---------eecceEEEEEEecccCEEEEE-----cCCccEEEEchhhcccc
Confidence            467899999888 899998333222222         122338899999988877775     46999999988653222


Q ss_pred             eEEee--------cCCCCcccceeEEE-EeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203          315 CVTFL--------DDKPHVKGIINSII-FLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ  385 (540)
Q Consensus       315 ~~~~~--------~~~~~~~~~v~~~~-~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  385 (540)
                      .....        ...-.....+...+ -....+...+.......|.+|.......... .......-...+.+++|.  
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~lp~~~~~i~~~--  147 (275)
T PF00780_consen   71 TSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEISLPDPPSSIAFL--  147 (275)
T ss_pred             ccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-ceeEEEEcCCCcEEEEEe--
Confidence            11000        00000112244444 1121344444444556899998876422110 122222245788999998  


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeeeccC------------ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          386 KQIVLSAGADKRIIGFDAGVGRADFKHQIE------------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       386 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      ++.++.|..+ ...+.|+.++.........            .....+..-+++   .+|++.  +..-.+.|.......
T Consensus       148 ~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~Ll~~--~~~g~fv~~~G~~~r  221 (275)
T PF00780_consen  148 GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDN---EFLLCY--DNIGVFVNKNGEPSR  221 (275)
T ss_pred             CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCc---eEEEEe--cceEEEEcCCCCcCc
Confidence            5777777655 4788999876653332211            122223222322   344432  233334444322111


Q ss_pred             eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203          454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  509 (540)
                      ...+.|       ...+.++++  ...||++.+.++ |.||++.+  ++.++++..
T Consensus       222 ~~~i~W-------~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~--~~lvQ~i~~  265 (275)
T PF00780_consen  222 KSTIQW-------SSAPQSVAY--SSPYLIAFSSNS-IEVRSLET--GELVQTIPL  265 (275)
T ss_pred             ccEEEc-------CCchhEEEE--ECCEEEEECCCE-EEEEECcC--CcEEEEEEC
Confidence            111111       124556666  455888776655 99999998  677666654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.90  E-value=0.00011  Score=72.45  Aligned_cols=152  Identities=12%  Similarity=0.177  Sum_probs=102.2

Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec--cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ--IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      +...|.--+++..+.+++.|+.-|.+++|+-..+.......  ..+.......++++   .++|.|+..|.|.+|-+...
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e---~lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE---YLVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh---HhhhhhcCCceEEeehhhcc
Confidence            44455555666778999999999999999988766543322  33445556667766   68899999999999998874


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC-C-CcccccccccccceeEEEEcCCCCEEEE
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS-A-NKPSQSIRAHQKRVFKAVWHYSHPLLIS  528 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~-~-~~~~~~~~~h~~~i~~l~~s~~~~~l~s  528 (540)
                      ......+ ....-..|...|++++|++++..+++|...|.|..-.+++. . ......+-.-.+.|..+... ++.+|++
T Consensus       109 ~p~~~~~-~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVS  186 (726)
T KOG3621|consen  109 LPRDLDY-VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVS  186 (726)
T ss_pred             CCCccee-eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHh
Confidence            4322111 11122347889999999999999999999999998888751 0 11122222334567777654 3344444


Q ss_pred             E
Q 009203          529 I  529 (540)
Q Consensus       529 ~  529 (540)
                      .
T Consensus       187 t  187 (726)
T KOG3621|consen  187 T  187 (726)
T ss_pred             h
Confidence            3

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.84  E-value=0.0051  Score=55.30  Aligned_cols=199  Identities=13%  Similarity=0.089  Sum_probs=108.2

Q ss_pred             cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC
Q 009203          327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG  406 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~  406 (540)
                      ..+.+++|+|+++.++++....+.|..++.. ++.   ...+...+ .+...+|++..++.++++.-.++.+.++++...
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v---lr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV---LRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E---EEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE---EEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence            4599999999556677777788888888875 443   33333322 456889999877777776666899999988432


Q ss_pred             Ce------eeeec------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC--Ccceeeee---ccccccCccccC
Q 009203          407 RA------DFKHQ------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL--RQTEIHAF---GWKQESSESQSA  469 (540)
Q Consensus       407 ~~------~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~--~~~~~~~~---~~~~~~~~~~~~  469 (540)
                      ..      ...+.      .....-.++|++.+.   .|+.+-...-..+|.+..  ........   .+. ........
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~---~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d  172 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN---RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD-DDKLFVRD  172 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTT---EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH--HT--SS-
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCC---EEEEEeCCCChhhEEEccccCccceeeccccccc-cccceecc
Confidence            21      11111      223456888988763   344444555555665543  11111110   011 01223346


Q ss_pred             eEEEEEcCC-CCEEEEEeCCCcEEEEeccCCCCcccccccccc---------cceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          470 LINQSWSPD-GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ---------KRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       470 v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~---------~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      +.+++++|. |.+++....+..|.++|..   ++++..+.-..         ...-.|+|.++|.+.++ ++-+.+++|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~---G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELDRQ---GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE-TT-----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEECCC---CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            789999995 5667777788889999965   55544433111         24678999999975555 466666554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.83  E-value=0.0043  Score=60.24  Aligned_cols=209  Identities=12%  Similarity=0.084  Sum_probs=112.3

Q ss_pred             ceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcc-------------------------------------cc-ceee
Q 009203          328 IINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSW-------------------------------------KP-KALH  369 (540)
Q Consensus       328 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------------------------------~~-~~~~  369 (540)
                      .|+.+.|++ +..-|+.|...|.|.||.....+.-.                                     .+ ....
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            388899999 77778888888999888654322100                                     00 0000


Q ss_pred             cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---------ccEEEEeec-----CCCCCceEEEE
Q 009203          370 RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---------SKCMSVLPN-----PCDFNLFMVQT  435 (540)
Q Consensus       370 ~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~-----~~~~~~~~l~~  435 (540)
                      .....++|++++.| |=.+++.|..+|.+.|.|+|....++.....         ..+.++.|.     .++.....+++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            12246789999987 6779999999999999999977776652221         234445443     33334468899


Q ss_pred             EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEE-EcCC-C-------------------CEEEEEeCCCcEEEE
Q 009203          436 GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQS-WSPD-G-------------------LYITSGSADPVIHLF  494 (540)
Q Consensus       436 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~sp~-g-------------------~~l~sg~~dg~i~iw  494 (540)
                      |...|.+.+|.+.-.........+......+.+.|..+. |+.+ |                   .-++....+..++++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            999999999988521111111111111124455665554 4322 1                   123333446779999


Q ss_pred             eccCCCCcccccccccccceeEEEE-----cCCCCEEEEEEcCCcEEEEeC
Q 009203          495 DIRYSANKPSQSIRAHQKRVFKAVW-----HYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       495 d~~~~~~~~~~~~~~h~~~i~~l~~-----s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ...+  .+.........-....+.+     ...+..|++-..||.|+++.|
T Consensus       241 ~~~~--~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  241 KPPK--SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             -TT-----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred             eCCC--CcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence            8886  3333222222112233344     235667888899999999864

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.81  E-value=0.051  Score=55.43  Aligned_cols=205  Identities=8%  Similarity=0.001  Sum_probs=112.1

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCC---CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK---HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      .|+.++.++.|.-.|..+++.+.++..........   ....-..+++.  +..++.+    +.++.|.-.|..+++...
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~----t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFG----TLDARLVALDAKTGKVVW  144 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEE----cCCCEEEEEECCCCCEEe
Confidence            45556667788888888888766654321100000   00000112332  3456666    789999999999884322


Q ss_pred             eEEeecCCCCccccee-EEEEeCCCCCEEEEEe------cCCcEEEEecCCCCCccccceeecccC--------------
Q 009203          315 CVTFLDDKPHVKGIIN-SIIFLPWENPCFATGG------SDHAVVLWSERDAEDSWKPKALHRNLH--------------  373 (540)
Q Consensus       315 ~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------  373 (540)
                      .......  .....+. .....  ++ .++.+.      .+|.|.-+|..+++.+|+.........              
T Consensus       145 ~~~~~~~--~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~  219 (527)
T TIGR03075       145 SKKNGDY--KAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG  219 (527)
T ss_pred             ecccccc--cccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence            2211100  0000111 11121  33 444443      268899999999998887665432100              


Q ss_pred             ------------Ccce-eEEEeccCCCEEEEEeCC-----C-----------eEEEEECCCCCeeeeeccC---------
Q 009203          374 ------------SSAV-MGVAGMQQKQIVLSAGAD-----K-----------RIIGFDAGVGRADFKHQIE---------  415 (540)
Q Consensus       374 ------------~~~v-~~l~~s~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~---------  415 (540)
                                  ...+ ..+++.+...+++.+..+     +           .|.-.|+++|+....++..         
T Consensus       220 ~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~  299 (527)
T TIGR03075       220 AKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDG  299 (527)
T ss_pred             cCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccC
Confidence                        0111 134666666777766532     2           5777889999886554431         


Q ss_pred             -ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          416 -SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       416 -~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                       ....-+....++.....++.+..+|.++++|..+++..
T Consensus       300 ~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       300 VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence             11111112223322247889999999999999998753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.79  E-value=0.003  Score=60.31  Aligned_cols=187  Identities=12%  Similarity=0.116  Sum_probs=109.9

Q ss_pred             CCEEEEEec----------CCcEEEEecCCC-CCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCC
Q 009203          339 NPCFATGGS----------DHAVVLWSERDA-EDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGR  407 (540)
Q Consensus       339 ~~~l~s~~~----------dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~  407 (540)
                      ..+|+.|+.          .|.|.++++... ....++..+......++|++++-- +|. |+++. ++.|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            467777753          288999999984 211223444444467889999876 444 44443 4689999998877


Q ss_pred             -eeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203          408 -ADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS  484 (540)
Q Consensus       408 -~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  484 (540)
                       ....  ......+.++....     .++++|.....+.++..+.....+..+.    .......++++.|-++++.++.
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~~-----~~I~vgD~~~sv~~~~~~~~~~~l~~va----~d~~~~~v~~~~~l~d~~~~i~  189 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVFK-----NYILVGDAMKSVSLLRYDEENNKLILVA----RDYQPRWVTAAEFLVDEDTIIV  189 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEET-----TEEEEEESSSSEEEEEEETTTE-EEEEE----EESS-BEEEEEEEE-SSSEEEE
T ss_pred             cchhhheecceEEEEEEeccc-----cEEEEEEcccCEEEEEEEccCCEEEEEE----ecCCCccEEEEEEecCCcEEEE
Confidence             4333  33445666666654     3888888888888875554222222221    1122446888888867779999


Q ss_pred             EeCCCcEEEEeccCCC-----C--ccccccccc-ccceeEE---EEcCC--C------CEEEEEEcCCcEEE
Q 009203          485 GSADPVIHLFDIRYSA-----N--KPSQSIRAH-QKRVFKA---VWHYS--H------PLLISISSDLNIGL  537 (540)
Q Consensus       485 g~~dg~i~iwd~~~~~-----~--~~~~~~~~h-~~~i~~l---~~s~~--~------~~l~s~~~dg~v~i  537 (540)
                      +..+|.+.++......     +  ........| ...|+++   .+.|.  +      ..++.++.+|.|.+
T Consensus       190 ~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  190 GDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             EcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            9999999999887310     1  111122223 3467777   55552  2      24888889998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.79  E-value=0.0088  Score=58.95  Aligned_cols=218  Identities=15%  Similarity=0.137  Sum_probs=108.9

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      -....+.++| +|++++.+ .||.-.|+......... .            +.-...+|.+.++ +|+-    ..++.|.
T Consensus        33 ~~p~~ls~np-ngr~v~V~-g~geY~iyt~~~~r~k~-~------------G~g~~~vw~~~n~-yAv~----~~~~~I~   92 (443)
T PF04053_consen   33 IYPQSLSHNP-NGRFVLVC-GDGEYEIYTALAWRNKA-F------------GSGLSFVWSSRNR-YAVL----ESSSTIK   92 (443)
T ss_dssp             S--SEEEE-T-TSSEEEEE-ETTEEEEEETTTTEEEE-E------------EE-SEEEE-TSSE-EEEE-----TTS-EE
T ss_pred             cCCeeEEECC-CCCEEEEE-cCCEEEEEEccCCcccc-c------------CceeEEEEecCcc-EEEE----ECCCeEE
Confidence            3478899999 58888885 47788888743322111 1            1234688998554 5665    6688899


Q ss_pred             EE-ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          304 VL-NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       304 vw-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      |+ ++... .   ...+..    ...+..|-    .|.+|...+. +.|.+||+.+++.   ...+    .-..|..+.|
T Consensus        93 I~kn~~~~-~---~k~i~~----~~~~~~If----~G~LL~~~~~-~~i~~yDw~~~~~---i~~i----~v~~vk~V~W  152 (443)
T PF04053_consen   93 IYKNFKNE-V---VKSIKL----PFSVEKIF----GGNLLGVKSS-DFICFYDWETGKL---IRRI----DVSAVKYVIW  152 (443)
T ss_dssp             EEETTEE--T---T---------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--E---EEEE----SS-E-EEEEE
T ss_pred             EEEcCccc-c---ceEEcC----CcccceEE----cCcEEEEECC-CCEEEEEhhHcce---eeEE----ecCCCcEEEE
Confidence            96 44321 1   111211    11233332    2667766665 4899999999875   2222    2234899999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCC------------CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVG------------RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      +++|.+++..+.+ .+.+++....            .....+.....+.+..|..+    .++.+...  .++.  +-.+
T Consensus       153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d----~fiYtT~~--~lkY--l~~G  223 (443)
T PF04053_consen  153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED----CFIYTTSN--HLKY--LVNG  223 (443)
T ss_dssp             -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT----EEEEE-TT--EEEE--EETT
T ss_pred             ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC----EEEEEcCC--eEEE--EEcC
Confidence            9999999998876 6777775533            22233443556666667654    23443332  4444  2222


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ....        +..-..++.=+.+.+..+.+.....|+.|..+.++.
T Consensus       224 e~~~--------i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  224 ETGI--------IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EEEE--------EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             Ccce--------EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            2111        111133556667777777888888888888887763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.74  E-value=0.027  Score=55.47  Aligned_cols=196  Identities=9%  Similarity=0.086  Sum_probs=97.9

Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccc-ceeec-ccCCccee
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKP-KALHR-NLHSSAVM  378 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~-~~~~~~v~  378 (540)
                      .|.||+...    ..+..+.-.   .+.+.++.|.. + ..|+.-..||.+++||+.... .... ..... ......+.
T Consensus        62 ~I~iys~sG----~ll~~i~w~---~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~  131 (410)
T PF04841_consen   62 SIQIYSSSG----KLLSSIPWD---SGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIF  131 (410)
T ss_pred             EEEEECCCC----CEeEEEEEC---CCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccccc
Confidence            588888773    233333221   26799999986 4 455566789999999997433 0000 00100 01112222


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCee-ee-eccCccEEE----------EeecCCCCCceEEEEEcCCCeEEEEE
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRAD-FK-HQIESKCMS----------VLPNPCDFNLFMVQTGTPGRQLRLYD  446 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~-~~~~~~~~~----------~~~~~~~~~~~~l~~~~~dg~v~i~d  446 (540)
                      ...+..+|-  +.-..++.+.+.+--..... .. .........          ..++.+.   ...+....++.+.+.+
T Consensus       132 ~~~~~~~Gi--vvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~---~~~i~~~~g~~i~~i~  206 (410)
T PF04841_consen  132 AIWFYKNGI--VVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR---VVEILLANGETIYIID  206 (410)
T ss_pred             ccccCCCCE--EEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc---ceEEEEecCCEEEEEE
Confidence            333333453  33334455544433222111 00 011000000          1111111   1223333344555333


Q ss_pred             CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-ccceeEEEEcCCCC
Q 009203          447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QKRVFKAVWHYSHP  524 (540)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~  524 (540)
                      -.....           ....+++..+++||+|++||.-..+|.+.|.+.+-  .+.+..+... ......|.|.-++.
T Consensus       207 ~~~~~~-----------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf--~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  207 ENSFKQ-----------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF--SEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             cccccc-----------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc--cceeEEeecCcCCCCcEEEEECCCc
Confidence            322110           11235899999999999999999999999988765  3344444322 34566777766543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.69  E-value=0.0014  Score=68.05  Aligned_cols=147  Identities=14%  Similarity=0.146  Sum_probs=95.1

Q ss_pred             CCEEEEE-eCCCeEEEEECCCCCeeeeeccCcc--EEEEeecCCCC--CceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          386 KQIVLSA-GADKRIIGFDAGVGRADFKHQIESK--CMSVLPNPCDF--NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       386 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      .++|+.. .....|+-.|+..|+.+........  +..++......  ...-.+.|-.++.+..||.+-....+..-.. 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~-  571 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS-  571 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc-
Confidence            3444443 3457899999999999877655433  44554432100  0124566777889999999965421111000 


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                       ..-......+|++-+.+| +||+|+.+|.||+||-..  .+.-..+.+-..+|.+|..+.||++|++.|. ..+.++
T Consensus       572 -k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi  644 (794)
T PF08553_consen  572 -KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG--KRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLI  644 (794)
T ss_pred             -cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc--hhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence             011234457788777666 899999999999999543  3444456677889999999999998887764 344444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.66  E-value=0.0066  Score=63.25  Aligned_cols=144  Identities=12%  Similarity=0.093  Sum_probs=93.7

Q ss_pred             CCCEEEEE-ecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc-----CCCEEEEEeCCCeEEEEECCCCC--ee
Q 009203          338 ENPCFATG-GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-----QKQIVLSAGADKRIIGFDAGVGR--AD  409 (540)
Q Consensus       338 ~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----~~~~l~~~~~dg~i~iwd~~~~~--~~  409 (540)
                      +.++|+.. .....|+-.|++.|+.+.....    ....+|..++-..     .....+.|-.+..+..||+|-..  .+
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~----~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v  567 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKV----HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV  567 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeec----CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence            44444443 3457799999999985322221    1223355554321     13345667778899999998643  22


Q ss_pred             e----eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE
Q 009203          410 F----KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG  485 (540)
Q Consensus       410 ~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg  485 (540)
                      .    .+.......+++-+.+|    +||+|+.+|.|++||--. ..      ....+++-..+|.+|..+.||+||++.
T Consensus       568 ~~~~k~Y~~~~~Fs~~aTt~~G----~iavgs~~G~IRLyd~~g-~~------AKT~lp~lG~pI~~iDvt~DGkwilaT  636 (794)
T PF08553_consen  568 DSQSKQYSSKNNFSCFATTEDG----YIAVGSNKGDIRLYDRLG-KR------AKTALPGLGDPIIGIDVTADGKWILAT  636 (794)
T ss_pred             eccccccccCCCceEEEecCCc----eEEEEeCCCcEEeecccc-hh------hhhcCCCCCCCeeEEEecCCCcEEEEe
Confidence            1    12334556677777776    899999999999999432 21      122456677899999999999998876


Q ss_pred             eCCCcEEEEecc
Q 009203          486 SADPVIHLFDIR  497 (540)
Q Consensus       486 ~~dg~i~iwd~~  497 (540)
                      + +..|.+++..
T Consensus       637 c-~tyLlLi~t~  647 (794)
T PF08553_consen  637 C-KTYLLLIDTL  647 (794)
T ss_pred             e-cceEEEEEEe
Confidence            5 5567777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.66  E-value=0.022  Score=55.23  Aligned_cols=245  Identities=13%  Similarity=0.105  Sum_probs=121.8

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccc-ccCCCCC---------CCCceeEEEecCCCeEEEE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTT-DCLSPKH---------RRWPEDIAWHPQGNSLFSA  292 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~h---------~~~V~~~~~~~~~~~l~s~  292 (540)
                      ...+....|||| |+.+|... ++.|.+++..++.. ..+.... .....|-         .+.-.++-|||||++|+..
T Consensus        42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             ccccccceeecC-CCeeEEEe-cCceEEEECCCCCe-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence            567999999996 88888876 57899998876632 1111110 0000000         1223678999999999886


Q ss_pred             eecCCC------------------------------CCe--EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC
Q 009203          293 HTADSG------------------------------DSQ--ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP  340 (540)
Q Consensus       293 ~~~~~~------------------------------d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  340 (540)
                      ....+.                              +..  +.|+|+.+++.. .+............+..+.|.+ ++.
T Consensus       119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~-d~~  196 (353)
T PF00930_consen  119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSP-DGK  196 (353)
T ss_dssp             EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEE-TTE
T ss_pred             EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecC-CCc
Confidence            221111                              111  333455444221 1111100001234578899998 776


Q ss_pred             EEEEEe--cC---CcEEEEecCCCCCccccceeecccCCcce---eEEEec-cCCC-EEEEEeCCCe--EEEEECCCCCe
Q 009203          341 CFATGG--SD---HAVVLWSERDAEDSWKPKALHRNLHSSAV---MGVAGM-QQKQ-IVLSAGADKR--IIGFDAGVGRA  408 (540)
Q Consensus       341 ~l~s~~--~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v---~~l~~s-~~~~-~l~~~~~dg~--i~iwd~~~~~~  408 (540)
                      .|+...  .+   ..+.++|..++.+    ..+........|   ....|. +++. ++.....+|.  |.+++...+..
T Consensus       197 ~l~~~~~nR~q~~~~l~~~d~~tg~~----~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~  272 (353)
T PF00930_consen  197 RLWVQWLNRDQNRLDLVLCDASTGET----RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP  272 (353)
T ss_dssp             EEEEEEEETTSTEEEEEEEEECTTTC----EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE
T ss_pred             EEEEEEcccCCCEEEEEEEECCCCce----eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce
Confidence            344332  22   2477788887664    222222222322   355554 5554 4444556664  66667776654


Q ss_pred             eeeeccCccEEE-EeecCCCCCceEEEEEcCC----CeEEEEECC-CCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203          409 DFKHQIESKCMS-VLPNPCDFNLFMVQTGTPG----RQLRLYDIR-LRQTEIHAFGWKQESSESQSALINQSWSPDGLYI  482 (540)
Q Consensus       409 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d----g~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  482 (540)
                      .......-.+.. +.+++.+.  .+.+++..+    ..|...++. .+..  ..+      ......-..+.|||+|+++
T Consensus       273 ~~lT~G~~~V~~i~~~d~~~~--~iyf~a~~~~p~~r~lY~v~~~~~~~~--~~L------T~~~~~~~~~~~Spdg~y~  342 (353)
T PF00930_consen  273 RQLTSGDWEVTSILGWDEDNN--RIYFTANGDNPGERHLYRVSLDSGGEP--KCL------TCEDGDHYSASFSPDGKYY  342 (353)
T ss_dssp             EESS-SSS-EEEEEEEECTSS--EEEEEESSGGTTSBEEEEEETTETTEE--EES------STTSSTTEEEEE-TTSSEE
T ss_pred             eccccCceeecccceEcCCCC--EEEEEecCCCCCceEEEEEEeCCCCCe--Eec------cCCCCCceEEEECCCCCEE
Confidence            433333444434 45566553  344455442    245555555 3332  211      1111111689999999998


Q ss_pred             EEEe
Q 009203          483 TSGS  486 (540)
Q Consensus       483 ~sg~  486 (540)
                      +...
T Consensus       343 v~~~  346 (353)
T PF00930_consen  343 VDTY  346 (353)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.035  Score=54.27  Aligned_cols=205  Identities=13%  Similarity=0.163  Sum_probs=133.1

Q ss_pred             eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203          226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL  305 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw  305 (540)
                      -.++++++++.+..++...++.|.+.|..+..........       .  ....++++++++.+.++.. +..++.+.+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-------~--~P~~~~~~~~~~~vYV~n~-~~~~~~vsvi  145 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-------L--GPVGLAVDPDGKYVYVANA-GNGNNTVSVI  145 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-------c--CCceEEECCCCCEEEEEec-ccCCceEEEE
Confidence            4577888875557777777789999997776554444322       1  3567999999998888711 0137888888


Q ss_pred             ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEE-EecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203          306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFAT-GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  384 (540)
                      |..+.   ........   -.. -..+++.| ++..++. -..++.|.+.|........ ........-......+.++|
T Consensus       146 d~~t~---~~~~~~~v---G~~-P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~  216 (381)
T COG3391         146 DAATN---KVTATIPV---GNT-PTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDP  216 (381)
T ss_pred             eCCCC---eEEEEEec---CCC-cceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECC
Confidence            88876   22333221   012 38899999 8875544 4578999999977654311 00000112334456789999


Q ss_pred             CCCEEEEEeCC---CeEEEEECCCCCeeee-eccCc-cEEEEeecCCCCCceEEEEE-cCCCeEEEEECCCCcc
Q 009203          385 QKQIVLSAGAD---KRIIGFDAGVGRADFK-HQIES-KCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQT  452 (540)
Q Consensus       385 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~  452 (540)
                      +|..+++....   +.+...|..++..... ..... ....+..+|.+   ..+.+. +..+.+.+.|..+...
T Consensus       217 ~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g---~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         217 DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAG---KAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCC---CEEEEEecCCCeEEEEeCCCCce
Confidence            99977765554   5899999998776554 22222 45677888887   344444 4458899999887654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.58  E-value=0.029  Score=55.24  Aligned_cols=181  Identities=9%  Similarity=0.053  Sum_probs=91.4

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCC-CCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS-PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      +.|-++.|+.+ . .|+.-..||.++++|+....   .+........ .-....+....+..+|  ++.-    ..++.+
T Consensus        81 ~~iv~~~wt~~-e-~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvL----t~~~~~  149 (410)
T PF04841_consen   81 GRIVGMGWTDD-E-ELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVL----TGNNRF  149 (410)
T ss_pred             CCEEEEEECCC-C-eEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCCCC--EEEE----CCCCeE
Confidence            79999999973 4 45566789999999986332   1211111000 0111112222333345  2322    344554


Q ss_pred             EEEecCCCCCceeEEeecCCCCc------ccceeE-EEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHV------KGIINS-IIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~------~~~v~~-~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                      .+..-...  ......+...+..      ...... ..++. +....+....++.+.+.+-.....      +   ...+
T Consensus       150 ~~v~n~~~--~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~------i---~~~~  217 (410)
T PF04841_consen  150 YVVNNIDE--PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ------I---DSDG  217 (410)
T ss_pred             EEEeCccc--cchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc------c---cCCC
Confidence            44422211  1111111111100      000111 22333 344444444555555444332110      1   1246


Q ss_pred             ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccEEEEeecCCC
Q 009203          376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKCMSVLPNPCD  427 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~  427 (540)
                      ++..++.||+|++++.-..+|.+.+.+..-.+....+..+  .....+.|..++
T Consensus       218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            7999999999999999999999999887666555544443  445556665543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.57  E-value=0.0082  Score=58.92  Aligned_cols=162  Identities=14%  Similarity=0.099  Sum_probs=98.6

Q ss_pred             cccccCceEEEEEecCCCcEEEEEe---CC-ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSA---LD-GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT  294 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~---~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~  294 (540)
                      +..-...+..-+|+|+ +..++.-+   .. ..+.++++.+++.......      .++   -..-+|+|||+.|+.+. 
T Consensus       188 l~~~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~------~g~---~~~P~fspDG~~l~f~~-  256 (425)
T COG0823         188 LTDSGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF------NGN---NGAPAFSPDGSKLAFSS-  256 (425)
T ss_pred             ecccCcceeccccCcC-CCceEEEEEecCCCceEEEEeccCCccceeecc------CCc---cCCccCCCCCCEEEEEE-
Confidence            3444466777889997 55544432   22 3588999998875444321      222   33578999999887763 


Q ss_pred             cCCCCC--eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-C--cEEEEecCCCCCccccceee
Q 009203          295 ADSGDS--QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-H--AVVLWSERDAEDSWKPKALH  369 (540)
Q Consensus       295 ~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~  369 (540)
                        ..||  .|.+.|+.+..    ...+..   ..+.-..-.|+| +|+.|+..+.. |  .|.+++.+.+..    ..+.
T Consensus       257 --~rdg~~~iy~~dl~~~~----~~~Lt~---~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT  322 (425)
T COG0823         257 --SRDGSPDIYLMDLDGKN----LPRLTN---GFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLT  322 (425)
T ss_pred             --CCCCCccEEEEcCCCCc----ceeccc---CCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce----eEee
Confidence              4445  45666777543    222222   123333678999 88888776543 3  377777777653    3333


Q ss_pred             cccCCcceeEEEeccCCCEEEEEeCC-Ce--EEEEECCCCC
Q 009203          370 RNLHSSAVMGVAGMQQKQIVLSAGAD-KR--IIGFDAGVGR  407 (540)
Q Consensus       370 ~~~~~~~v~~l~~s~~~~~l~~~~~d-g~--i~iwd~~~~~  407 (540)
                      ..  .+.-..-.|+|||++|+..+.. |.  |.+.|+.++.
T Consensus       323 ~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         323 FS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             cc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            32  2222277899999999987753 33  6666666555

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.56  E-value=0.082  Score=52.15  Aligned_cols=158  Identities=11%  Similarity=0.121  Sum_probs=90.4

Q ss_pred             cCceEEEEEecCCCcEEEEEe--CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC----eEEEEeecC
Q 009203          223 KRKLRSLSLNPVNEQLFVTSA--LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN----SLFSAHTAD  296 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~----~l~s~~~~~  296 (540)
                      -.+|..++|.- +.+.++|.-  .+|.+++=|.       ..        -|....|..+.|.|-+.    .|++.    
T Consensus        19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds-------~v--------iGqFEhV~GlsW~P~~~~~~paLLAV----   78 (671)
T PF15390_consen   19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDS-------KV--------IGQFEHVHGLSWAPPCTADTPALLAV----   78 (671)
T ss_pred             hccccceEecC-CCEEEEEeeeeeCCccccCCc-------cE--------eeccceeeeeeecCcccCCCCceEEE----
Confidence            35889999984 566666643  2333332221       11        13445589999998532    34444    


Q ss_pred             CCCCeEEEEecCCCC---CceeE-EeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203          297 SGDSQISVLNLNKTK---GRACV-TFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL  372 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~---~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  372 (540)
                      .....|.||.+....   ....+ ++-+......--..++.|+| ....|+.-.....-.+++++....    +....-.
T Consensus        79 QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~s----rVkaDi~  153 (671)
T PF15390_consen   79 QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSS----RVKADIK  153 (671)
T ss_pred             eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCc----eEEEecc
Confidence            789999999987321   11111 11111000111234678999 777776665544445666665442    2211123


Q ss_pred             CCcceeEEEeccCCCEEEEEeCC-CeEEEEECCC
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGAD-KRIIGFDAGV  405 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~d-g~i~iwd~~~  405 (540)
                      ..+.|.|.+|.+||+.|+++-.. =.-++||-..
T Consensus       154 ~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  154 TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            56789999999999988776443 2467888643

>smart00320 WD40 WD40 repeats

Probab=97.53  E-value=0.00015  Score=43.79  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=33.4

Q ss_pred             cccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          502 KPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       502 ~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .+...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34556677888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.52  E-value=0.091  Score=53.63  Aligned_cols=166  Identities=9%  Similarity=-0.009  Sum_probs=92.3

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec--CCCCCeEEEEecCCCCCcee
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA--DSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~--~~~d~~i~vwd~~~~~~~~~  315 (540)
                      .++.++.|+.+.-.|..+++.+........    .....+.+--.--++ .++++...  .+.+|.|..+|..+++....
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~----~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDY----KAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccccc----cccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            566777899999999999987665532110    000111111111134 44444110  01368899999988854333


Q ss_pred             EEeecCCC-------------------------Cccccee-EEEEeCCCCCEEEEEecC-----C-----------cEEE
Q 009203          316 VTFLDDKP-------------------------HVKGIIN-SIIFLPWENPCFATGGSD-----H-----------AVVL  353 (540)
Q Consensus       316 ~~~~~~~~-------------------------~~~~~v~-~~~~~p~~~~~l~s~~~d-----g-----------~i~i  353 (540)
                      .......+                         +-.+.++ .+++.| ...+++.+..+     +           +|.-
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA  275 (527)
T TIGR03075       197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA  275 (527)
T ss_pred             ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence            22222110                         0011222 346666 55556555421     2           5777


Q ss_pred             EecCCCCCccccceeecccCCc----ceeEEEeccCCC---EEEEEeCCCeEEEEECCCCCee
Q 009203          354 WSERDAEDSWKPKALHRNLHSS----AVMGVAGMQQKQ---IVLSAGADKRIIGFDAGVGRAD  409 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~----~v~~l~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~  409 (540)
                      .|+++++..|..+......+.-    ...-+....+|+   .++.+..+|.+++.|.++|+.+
T Consensus       276 ld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       276 RDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            8999999887777654322211    112222334665   7888999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.50  E-value=0.044  Score=51.26  Aligned_cols=221  Identities=11%  Similarity=0.036  Sum_probs=114.5

Q ss_pred             EEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC
Q 009203          230 SLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK  309 (540)
Q Consensus       230 ~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~  309 (540)
                      .|.++.+.++.+--..+.|.-|+..+++. ..+         .+...+.++..-..+..|+++      +.-+.+++.++
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~---------~~p~~~~~~~~~d~~g~Lv~~------~~g~~~~~~~~   94 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVF---------PSPGGFSSGALIDAGGRLIAC------EHGVRLLDPDT   94 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEE---------ECCCCcccceeecCCCeEEEE------ccccEEEeccC
Confidence            45665555677777778888888876542 112         112223455555555566665      44466777755


Q ss_pred             CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-----------CCcEEEEecCCCCCccccceeecccCCccee
Q 009203          310 TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-----------DHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      +.....+.... ........+.+...| +|.+.++...           -|.|+.+|. .+..   ...+  ..+-..-+
T Consensus        95 ~~~~t~~~~~~-~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~---~~l~--~~~~~~~N  166 (307)
T COG3386          95 GGKITLLAEPE-DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV---VRLL--DDDLTIPN  166 (307)
T ss_pred             CceeEEecccc-CCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCE---EEee--cCcEEecC
Confidence            42211111111 112234577888888 7776655433           133444443 2321   1111  22345568


Q ss_pred             EEEeccCCCEEEEEeC-CCeEEEEECCC--CCe----ee-ee-ccCccEEEEeecCCCCCceEEEEEcCCC-eEEEEECC
Q 009203          379 GVAGMQQKQIVLSAGA-DKRIIGFDAGV--GRA----DF-KH-QIESKCMSVLPNPCDFNLFMVQTGTPGR-QLRLYDIR  448 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~-dg~i~iwd~~~--~~~----~~-~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~  448 (540)
                      .|+||||++.|+.+.. .+.|..|++..  +..    .. .. ...+..-.++.+.++   .+.+++..+| .|.+|+..
T Consensus       167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG---~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG---NLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC---CEEEecccCCceEEEECCC
Confidence            9999999987776655 47788887763  111    00 11 112333334444444   3443444443 89999888


Q ss_pred             CCcceeeeeccccccCccccCeEEEEEc-CCCCEEEEE
Q 009203          449 LRQTEIHAFGWKQESSESQSALINQSWS-PDGLYITSG  485 (540)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~sg  485 (540)
                       ++......       -....+++++|- |+.+.|++.
T Consensus       244 -G~l~~~i~-------lP~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         244 -GKLLGEIK-------LPVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             -CcEEEEEE-------CCCCCCccceEeCCCcCEEEEE
Confidence             44322211       112456777773 444554433

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.49  E-value=0.11  Score=51.63  Aligned_cols=226  Identities=12%  Similarity=0.103  Sum_probs=113.5

Q ss_pred             eeEEEecCCCeEEEEeec-CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-------
Q 009203          278 EDIAWHPQGNSLFSAHTA-DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-------  349 (540)
Q Consensus       278 ~~~~~~~~~~~l~s~~~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-------  349 (540)
                      ....++|+|++||.+... |+....|+++|+.+++  .....+..     .....+.|.+ +++.|+....+.       
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--~l~d~i~~-----~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--FLPDGIEN-----PKFSSVSWSD-DGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--EEEEEEEE-----EESEEEEECT-TSSEEEEEECSTTTSS-CC
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--CcCCcccc-----cccceEEEeC-CCCEEEEEEeCcccccccC
Confidence            367889999999877444 4445679999999872  22222221     1123499999 777766554332       


Q ss_pred             ----cEEEEecCCCCCccccceeecccCCcc-eeEEEeccCCCEEEEEeCC----CeEEEEECCCC-----Ceeeeec-c
Q 009203          350 ----AVVLWSERDAEDSWKPKALHRNLHSSA-VMGVAGMQQKQIVLSAGAD----KRIIGFDAGVG-----RADFKHQ-I  414 (540)
Q Consensus       350 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~-----~~~~~~~-~  414 (540)
                          .|+.|.+.+...  .-..+........ ...+..++|+++|+.....    ..+.+.|+..+     ....... .
T Consensus       199 ~~~~~v~~~~~gt~~~--~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQS--EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             GCCEEEEEEETTS-GG--G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             CCCcEEEEEECCCChH--hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence                377788877653  1112322222222 6688889999998764432    35888888875     2222222 2


Q ss_pred             CccEEEEeecCCCCCceEEEEE--cCCCeEEEEECCCCcceeeeeccccccCcccc--CeEEEEEcCCCCEEEEE-eCCC
Q 009203          415 ESKCMSVLPNPCDFNLFMVQTG--TPGRQLRLYDIRLRQTEIHAFGWKQESSESQS--ALINQSWSPDGLYITSG-SADP  489 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg-~~dg  489 (540)
                      ......+....+.   .++.+.  ..++.|...++.........    ..+..+..  .+..+..  .+.+|+.. ..++
T Consensus       277 ~~~~~~v~~~~~~---~yi~Tn~~a~~~~l~~~~l~~~~~~~~~----~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~  347 (414)
T PF02897_consen  277 DGVEYYVDHHGDR---LYILTNDDAPNGRLVAVDLADPSPAEWW----TVLIPEDEDVSLEDVSL--FKDYLVLSYRENG  347 (414)
T ss_dssp             SS-EEEEEEETTE---EEEEE-TT-TT-EEEEEETTSTSGGGEE----EEEE--SSSEEEEEEEE--ETTEEEEEEEETT
T ss_pred             CceEEEEEccCCE---EEEeeCCCCCCcEEEEecccccccccce----eEEcCCCCceeEEEEEE--ECCEEEEEEEECC
Confidence            2222223222211   344443  23466777777766531100    01223333  3444444  45555544 3443


Q ss_pred             --cEEEEeccCCCCccccccc-ccccceeEEEEcCCCC
Q 009203          490 --VIHLFDIRYSANKPSQSIR-AHQKRVFKAVWHYSHP  524 (540)
Q Consensus       490 --~i~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~~~~  524 (540)
                        .|++|++..  +.....+. .-.+.|..+...+++.
T Consensus       348 ~~~l~v~~~~~--~~~~~~~~~p~~g~v~~~~~~~~~~  383 (414)
T PF02897_consen  348 SSRLRVYDLDD--GKESREIPLPEAGSVSGVSGDFDSD  383 (414)
T ss_dssp             EEEEEEEETT---TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred             ccEEEEEECCC--CcEEeeecCCcceEEeccCCCCCCC
Confidence              578888882  22222222 1233456666555554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.48  E-value=0.069  Score=47.66  Aligned_cols=244  Identities=11%  Similarity=0.063  Sum_probs=133.5

Q ss_pred             EEEEecCCCcEEEEEeCCce-EEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee-cCCCCCeEEEE
Q 009203          228 SLSLNPVNEQLFVTSALDGV-IRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT-ADSGDSQISVL  305 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-~~~~d~~i~vw  305 (540)
                      .++|+|....-++.+-.-|+ ..++|....+.+.++.....-...||      =.|||||.+|+..-+ ....-|.|-||
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCCCCCceEEEE
Confidence            56777765556666666665 46788887776665544332222344      468999999988611 01344789999


Q ss_pred             ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec------------------CCcEEEEecCCCCCccccce
Q 009203          306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS------------------DHAVVLWSERDAEDSWKPKA  367 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~~  367 (540)
                      |...+  ...+-.+.   .|.-....+.|.+ ||..++.+..                  .-++.+.|..++..+.+. +
T Consensus       146 d~r~~--fqrvgE~~---t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh-~  218 (366)
T COG3490         146 DAREG--FQRVGEFS---THGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH-T  218 (366)
T ss_pred             ecccc--cceecccc---cCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc-c
Confidence            99855  23333333   3444467888999 9998887642                  112344454454432211 1


Q ss_pred             eecccCCcceeEEEeccCCCEEEEEeCCCe-----EEEEECCCCCeeeeecc--------CccEEEEeecCCCCCceEEE
Q 009203          368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKR-----IIGFDAGVGRADFKHQI--------ESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~  434 (540)
                      +....+.-.|..++..+||..++.+-..|.     -.+=-...++.+.....        ...+-+++.+-...  ...+
T Consensus       219 Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~g--lV~l  296 (366)
T COG3490         219 LPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDG--LVAL  296 (366)
T ss_pred             CchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCC--eEEE
Confidence            211235566888888888877665543331     11111122333222211        23445566554431  3444


Q ss_pred             EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      +.-..+...+||..++.......     +    ..+..++  +...-+++.+.+|.+.++.-.
T Consensus       297 TSP~GN~~vi~da~tG~vv~~a~-----l----~daaGva--~~~~gf~vssg~G~~~~~s~~  348 (366)
T COG3490         297 TSPRGNRAVIWDAATGAVVSEAA-----L----PDAAGVA--AAKGGFAVSSGQGRIIFYSRA  348 (366)
T ss_pred             ecCCCCeEEEEEcCCCcEEeccc-----c----cccccce--eccCceEEecCCceEEecccc
Confidence            55555678899999887533210     0    1122222  234445566678888887433

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.48  E-value=0.0002  Score=61.11  Aligned_cols=141  Identities=14%  Similarity=0.095  Sum_probs=86.6

Q ss_pred             EEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc
Q 009203          388 IVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES  466 (540)
Q Consensus       388 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~  466 (540)
                      .+...+.||.|+-++++.-+.-...... .....+.-.  +   .-+++|+.+|.|++|+..........+     ..+-
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~--~---~~~~vG~~dg~v~~~n~n~~g~~~d~~-----~s~~  101 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA--S---AKLMVGTSDGAVYVFNWNLEGAHSDRV-----CSGE  101 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc--C---ceEEeecccceEEEecCCccchHHHhh-----hccc
Confidence            3445667888888887653331111000 000111111  1   478999999999999987332211110     0111


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccc-cceeEEEEcCCCCEEEEE--EcCCcEEEEeC
Q 009203          467 QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ-KRVFKAVWHYSHPLLISI--SSDLNIGLHKI  540 (540)
Q Consensus       467 ~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~-~~i~~l~~s~~~~~l~s~--~~dg~v~iw~l  540 (540)
                      ....+.+.--.++.+.++++.||.|+.|++..  .+.+.....|. .++..+..+..+.+|+++  |.|..++.|++
T Consensus       102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p--~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP--NKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             ccceeccccccccceeEEeccCCceeeecccc--CceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence            12223333344667899999999999999986  56666666677 567777777777888888  88888888875

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.46  E-value=0.03  Score=53.54  Aligned_cols=236  Identities=8%  Similarity=-0.019  Sum_probs=102.9

Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCC-CceeEEeecCCCCc----ccceeEEEEeCCCCCEEEEEec------CCcEEE
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTK-GRACVTFLDDKPHV----KGIINSIIFLPWENPCFATGGS------DHAVVL  353 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~s~~~------dg~i~i  353 (540)
                      +.++|+..   +-..+.|.|+|+.+.. ..+..++++...-+    -+....+-..| +|.+++++-.      -|.+.+
T Consensus        86 ~Rr~Li~P---gL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~l  161 (461)
T PF05694_consen   86 ERRYLILP---GLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVL  161 (461)
T ss_dssp             -S-EEEEE---BTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEE
T ss_pred             cCCcEEee---eeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEE
Confidence            34466665   2588999999998543 33444554421000    01123334456 8888887622      245777


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC--------------------CCeEEEEECCCCCeeeeec
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA--------------------DKRIIGFDAGVGRADFKHQ  413 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~  413 (540)
                      +|-++.+.......-  .+....-+.+-|.|..+.+++...                    ..++.+||+.+.+.++...
T Consensus       162 lD~~tf~v~g~We~~--~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id  239 (461)
T PF05694_consen  162 LDGETFEVKGRWEKD--RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID  239 (461)
T ss_dssp             E-TTT--EEEE--SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred             EcCccccccceeccC--CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence            777765431111110  112334567778888888887642                    3579999999999988876


Q ss_pred             cC---ccEEEEee--cCCCCCceEEEEEcCCCeEEEEEC-CCCcc---eeeeeccc-----------cccCccccCeEEE
Q 009203          414 IE---SKCMSVLP--NPCDFNLFMVQTGTPGRQLRLYDI-RLRQT---EIHAFGWK-----------QESSESQSALINQ  473 (540)
Q Consensus       414 ~~---~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~-~~~~~---~~~~~~~~-----------~~~~~~~~~v~~~  473 (540)
                      .+   ...+.+.|  +|....  -++.+.-..+|..|-- ..+.-   .+..+...           ..+..-..-|+.|
T Consensus       240 Lg~~g~~pLEvRflH~P~~~~--gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI  317 (461)
T PF05694_consen  240 LGEEGQMPLEVRFLHDPDANY--GFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI  317 (461)
T ss_dssp             S-TTEEEEEEEEE-SSTT--E--EEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred             cCCCCCceEEEEecCCCCccc--eEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence            65   23444444  555432  3333334455555544 32220   11111000           0011113457899


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEeccCCCCcccc--ccc----------------ccccceeEEEEcCCCCEEEEE
Q 009203          474 SWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQ--SIR----------------AHQKRVFKAVWHYSHPLLISI  529 (540)
Q Consensus       474 ~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~--~~~----------------~h~~~i~~l~~s~~~~~l~s~  529 (540)
                      ..|.|.++|.... .+|.|+.||+..+ ..+..  .+.                .-.+...-|..|-||+.|...
T Consensus       318 ~iSlDDrfLYvs~W~~GdvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  318 LISLDDRFLYVSNWLHGDVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             EE-TTS-EEEEEETTTTEEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             EEccCCCEEEEEcccCCcEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            9999999988665 5899999999974 22221  111                011233667788888876554

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.43  E-value=0.16  Score=50.56  Aligned_cols=264  Identities=13%  Similarity=0.121  Sum_probs=133.7

Q ss_pred             EEEeccchhcccc-cCceEEEEEecCCCcEEEEE-eCC----ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe
Q 009203          210 IHCHTSNHVSSLH-KRKLRSLSLNPVNEQLFVTS-ALD----GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH  283 (540)
Q Consensus       210 i~~~~~~~~~~~h-~~~V~~l~~spd~~~~l~tg-~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~  283 (540)
                      -.+.|....-.++ .-.+..++++|| +++||.+ +..    ..+++.|+.+++.+.......         ....+.|.
T Consensus       109 evllD~n~l~~~~~~~~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~---------~~~~~~W~  178 (414)
T PF02897_consen  109 EVLLDPNELAKDGGYVSLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP---------KFSSVSWS  178 (414)
T ss_dssp             EEEEEGGGGSTTSS-EEEEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE---------ESEEEEEC
T ss_pred             EEEEcchHhhccCceEEeeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc---------ccceEEEe
Confidence            4455766665666 344556889996 7776654 333    359999999986543321111         01249999


Q ss_pred             cCCCeEEEEeecC-CC------CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC----CcEE
Q 009203          284 PQGNSLFSAHTAD-SG------DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD----HAVV  352 (540)
Q Consensus       284 ~~~~~l~s~~~~~-~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----g~i~  352 (540)
                      ++++.|+...... ..      ...|+.|.+.++.... ...++.... ......+..++ ++++|+.....    ..++
T Consensus       179 ~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~-~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~  255 (414)
T PF02897_consen  179 DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDE-PFWFVSVSRSK-DGRYLFISSSSGTSESEVY  255 (414)
T ss_dssp             TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTC-TTSEEEEEE-T-TSSEEEEEEESSSSEEEEE
T ss_pred             CCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCC-CcEEEEEEecC-cccEEEEEEEccccCCeEE
Confidence            9988776652221 12      4458888888764321 233443221 11266788898 88887654332    3478


Q ss_pred             EEecCCCC-CccccceeecccCCcceeEEEeccCCCEEEEEeC---CCeEEEEECCCCCe---e-eeecc--CccEEEEe
Q 009203          353 LWSERDAE-DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA---DKRIIGFDAGVGRA---D-FKHQI--ESKCMSVL  422 (540)
Q Consensus       353 iwd~~~~~-~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~---~-~~~~~--~~~~~~~~  422 (540)
                      +.|+..+. ....+..+..  ....+....-+.++.+++....   ++.|...++.....   . .....  ...+..+.
T Consensus       256 ~~d~~~~~~~~~~~~~l~~--~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~  333 (414)
T PF02897_consen  256 LLDLDDGGSPDAKPKLLSP--REDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS  333 (414)
T ss_dssp             EEECCCTTTSS-SEEEEEE--SSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred             EEeccccCCCcCCcEEEeC--CCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence            88887751 0111222221  2233333222224444444332   45677788877653   1 11222  22344444


Q ss_pred             ecCCCCCceEEEEEcCCC--eEEEEECC-CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE--e--CCCcEEEEe
Q 009203          423 PNPCDFNLFMVQTGTPGR--QLRLYDIR-LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG--S--ADPVIHLFD  495 (540)
Q Consensus       423 ~~~~~~~~~~l~~~~~dg--~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg--~--~dg~i~iwd  495 (540)
                      ...+    .+++....++  .|++|++. +.......      +. -.+.|..+...++++.+...  +  .-++++.||
T Consensus       334 ~~~~----~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~------~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d  402 (414)
T PF02897_consen  334 LFKD----YLVLSYRENGSSRLRVYDLDDGKESREIP------LP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYD  402 (414)
T ss_dssp             EETT----EEEEEEEETTEEEEEEEETT-TEEEEEEE------SS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEE
T ss_pred             EECC----EEEEEEEECCccEEEEEECCCCcEEeeec------CC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            4332    3555555554  48888888 33221111      11 12345566655655544322  2  235677788


Q ss_pred             ccCC
Q 009203          496 IRYS  499 (540)
Q Consensus       496 ~~~~  499 (540)
                      +.++
T Consensus       403 ~~t~  406 (414)
T PF02897_consen  403 LATG  406 (414)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            8763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.41  E-value=0.017  Score=43.99  Aligned_cols=104  Identities=8%  Similarity=0.105  Sum_probs=68.7

Q ss_pred             eeEEEEeCCCC---CEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC
Q 009203          329 INSIIFLPWEN---PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV  405 (540)
Q Consensus       329 v~~~~~~p~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~  405 (540)
                      |++|++...++   +.|++|+.|..|++|+-..--     ..   ....+.|.+++-... ..++.+..+|+|-+|+-. 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~-----~E---i~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV-----AE---ITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS-   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE-----EE---EecccceEEEEEcCC-CEEEEEecCCEEEEEeCc-
Confidence            56666654333   679999999999999876421     11   225577888887765 668889999999999763 


Q ss_pred             CCeeeeeccCccEEEEeecC-CCCCceEEEEEcCCCeEE
Q 009203          406 GRADFKHQIESKCMSVLPNP-CDFNLFMVQTGTPGRQLR  443 (540)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~v~  443 (540)
                       ..+........+.++.+.. ++....-|++|-.+|.|-
T Consensus        72 -~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 -QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             3344444455566655433 222225688888888764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0008  Score=65.85  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=70.7

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCce-eEEEecCCCeEEEEeecCCCCCeE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE-DIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      -.|.-+.|+| .-.++|++..+|.|.++.++ .+.+.++        +-|...++ +++|.|||+.||+|    -.||+|
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwti--------p~p~~~v~~sL~W~~DGkllaVg----~kdG~I   86 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTI--------PIPGENVTASLCWRPDGKLLAVG----FKDGTI   86 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEec--------cCCCCccceeeeecCCCCEEEEE----ecCCeE
Confidence            3578899999 58999999999999998887 5555555        23445555 99999999999999    899999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeC
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP  336 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  336 (540)
                      ++.|+.++..   +..+..  .....|.++-|.+
T Consensus        87 ~L~Dve~~~~---l~~~~~--s~e~~is~~~w~~  115 (665)
T KOG4640|consen   87 RLHDVEKGGR---LVSFLF--SVETDISKGIWDR  115 (665)
T ss_pred             EEEEccCCCc---eecccc--ccccchheeeccc
Confidence            9999998732   222111  1234578888864

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.00073  Score=66.09  Aligned_cols=92  Identities=13%  Similarity=0.103  Sum_probs=72.6

Q ss_pred             cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee-EEEeccCCCEEEEEeCCCeEEEEECCC
Q 009203          327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM-GVAGMQQKQIVLSAGADKRIIGFDAGV  405 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~l~~s~~~~~l~~~~~dg~i~iwd~~~  405 (540)
                      ..+.-+.|+| .-.+||++..+|.|-++.+. -+.+|.   +  .-+...++ +++|.|||+.|++|-.||+|++.|..+
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwt---i--p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWT---I--PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEe---c--cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            3478899999 99999999999999888887 332222   2  22555566 999999999999999999999999999


Q ss_pred             CCeeee--eccCccEEEEeecC
Q 009203          406 GRADFK--HQIESKCMSVLPNP  425 (540)
Q Consensus       406 ~~~~~~--~~~~~~~~~~~~~~  425 (540)
                      +..+..  ......+..+.|.+
T Consensus        94 ~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   94 GGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             CCceeccccccccchheeeccc
Confidence            988766  45556666777764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.38  E-value=0.048  Score=52.09  Aligned_cols=188  Identities=14%  Similarity=0.154  Sum_probs=108.3

Q ss_pred             CcEEEEEeC----------CceEEEEEcCCC-C--CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          236 EQLFVTSAL----------DGVIRLWQLQSR-G--SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       236 ~~~l~tg~~----------dg~v~iw~~~~~-~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ..+|+.|..          .|.|.++++... .  ....+...     ....++|++++-. .| .|+++     .++.|
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-----~~~~g~V~ai~~~-~~-~lv~~-----~g~~l  109 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-----TEVKGPVTAICSF-NG-RLVVA-----VGNKL  109 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-----EEESS-EEEEEEE-TT-EEEEE-----ETTEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-----EeecCcceEhhhh-CC-EEEEe-----ecCEE
Confidence            467777742          289999999884 1  11122111     1235678888776 34 45554     46899


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      .+|++...+.......+..    ...+.++...   +++++.|.....+.++..+....  ++..+........++++.|
T Consensus       110 ~v~~l~~~~~l~~~~~~~~----~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~--~l~~va~d~~~~~v~~~~~  180 (321)
T PF03178_consen  110 YVYDLDNSKTLLKKAFYDS----PFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN--KLILVARDYQPRWVTAAEF  180 (321)
T ss_dssp             EEEEEETTSSEEEEEEE-B----SSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE---EEEEEEESS-BEEEEEEE
T ss_pred             EEEEccCcccchhhheecc----eEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC--EEEEEEecCCCccEEEEEE
Confidence            9999987641122222221    2356777664   46899999888888875543110  1333444445677899999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCC-------CC-e---eeeeccCccEEEE---eecCC--CCC---ceEEEEEcCCCeEE
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGV-------GR-A---DFKHQIESKCMSV---LPNPC--DFN---LFMVQTGTPGRQLR  443 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~-------~~-~---~~~~~~~~~~~~~---~~~~~--~~~---~~~l~~~~~dg~v~  443 (540)
                      -++++.++.+..+|.+.++....       +. .   ...+..+..+.++   ...|.  +..   ...++.++.+|.|.
T Consensus       181 l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  181 LVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             E-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred             ecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence            86667999999999999987752       22 1   2235556666666   43441  111   13467777788877


Q ss_pred             E
Q 009203          444 L  444 (540)
Q Consensus       444 i  444 (540)
                      +
T Consensus       261 ~  261 (321)
T PF03178_consen  261 V  261 (321)
T ss_dssp             E
T ss_pred             E
Confidence            3

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.31  E-value=0.064  Score=48.25  Aligned_cols=172  Identities=11%  Similarity=0.107  Sum_probs=107.8

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      .|-...|.++.|+|+ .+.|++....+.-.||=...|+.+.++....       -...-.+.|..+|.+.++-    -.+
T Consensus        82 ~g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------~~DpE~Ieyig~n~fvi~d----ER~  149 (316)
T COG3204          82 LGETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------FSDPETIEYIGGNQFVIVD----ERD  149 (316)
T ss_pred             ccccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccc-------cCChhHeEEecCCEEEEEe----hhc
Confidence            344556999999997 6777777777777788777788777765432       1223568898888888887    788


Q ss_pred             CeEEEEecCCCCCceeE----EeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee-----ec
Q 009203          300 SQISVLNLNKTKGRACV----TFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL-----HR  370 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~  370 (540)
                      ..+.++.++........    -.+....+.....-.++|.| ....|..+-.-.-+.||.+............     ..
T Consensus       150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~  228 (316)
T COG3204         150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR  228 (316)
T ss_pred             ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCccccc
Confidence            99998887755221111    11222222234478999999 6666666666666777766643311001110     00


Q ss_pred             ccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECC
Q 009203          371 NLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAG  404 (540)
Q Consensus       371 ~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~  404 (540)
                      .-.-..|.++.|++ .+.+++.+..++.+.-.|..
T Consensus       229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence            11234577888876 45667777778888777776

>smart00320 WD40 WD40 repeats

Probab=97.29  E-value=0.0004  Score=41.77  Aligned_cols=33  Identities=24%  Similarity=0.526  Sum_probs=29.7

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEE
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQ  252 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~  252 (540)
                      +.+|...|++++|+++ +.++++++.|+.+++|+
T Consensus         8 ~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence            4578899999999995 78999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.21  Score=48.88  Aligned_cols=239  Identities=13%  Similarity=0.114  Sum_probs=146.0

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC-EEEEEecCCcEEEEe
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDHAVVLWS  355 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd  355 (540)
                      ...+...+++..+....   .....+...+....    ........+  .....++++++ .+. .+++...+..|.+.|
T Consensus        33 ~~~v~~~~~g~~~~v~~---~~~~~~~~~~~~~n----~~~~~~~~g--~~~p~~i~v~~-~~~~vyv~~~~~~~v~vid  102 (381)
T COG3391          33 PGGVAVNPDGTQVYVAN---SGSNDVSVIDATSN----TVTQSLSVG--GVYPAGVAVNP-AGNKVYVTTGDSNTVSVID  102 (381)
T ss_pred             CceeEEcCccCEEEEEe---ecCceeeecccccc----eeeeeccCC--CccccceeeCC-CCCeEEEecCCCCeEEEEc
Confidence            45688888887665551   22224555444411    111111100  13356788888 555 666666678999999


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC---CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceE
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA---DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (540)
                      ..+...   ....   .-......++++++++.++.+..   ++.+.+.|..+++.+.....+.....++++|++.  ..
T Consensus       103 ~~~~~~---~~~~---~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~--~v  174 (381)
T COG3391         103 TATNTV---LGSI---PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGN--KV  174 (381)
T ss_pred             Ccccce---eeEe---eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCC--eE
Confidence            776553   1111   12226778999999988877766   6889999999888877655444448889999884  24


Q ss_pred             EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeccCCCCccccc-cc
Q 009203          433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---PVIHLFDIRYSANKPSQS-IR  508 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~-~~  508 (540)
                      +++-..++.|.++|........   ........-......+.++|+|.++......   +.+...|..+  +..... ..
T Consensus       175 yv~~~~~~~v~vi~~~~~~v~~---~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~--~~v~~~~~~  249 (381)
T COG3391         175 YVTNSDDNTVSVIDTSGNSVVR---GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT--GNVTATDLP  249 (381)
T ss_pred             EEEecCCCeEEEEeCCCcceec---cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC--ceEEEeccc
Confidence            5555688999999976554321   0000111223355778999999976655433   5888888876  333332 11


Q ss_pred             -ccccceeEEEEcCCCCEEEEEEc-CCcEEEEe
Q 009203          509 -AHQKRVFKAVWHYSHPLLISISS-DLNIGLHK  539 (540)
Q Consensus       509 -~h~~~i~~l~~s~~~~~l~s~~~-dg~v~iw~  539 (540)
                       +-. ....+..+|+|..+..... .+.+.+-|
T Consensus       250 ~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         250 VGSG-APRGVAVDPAGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             cccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence             112 4567889999987776633 35555543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.28  E-value=0.024  Score=43.16  Aligned_cols=101  Identities=13%  Similarity=0.115  Sum_probs=68.4

Q ss_pred             eeEEEecc---C-CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          377 VMGVAGMQ---Q-KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       377 v~~l~~s~---~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      |+++++..   + .+.|++|+.|..|++|+-.  ..+........+.++.....+    .++.+..+|+|-+|+-.... 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~----~F~Y~l~NGTVGvY~~~~Rl-   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGG----RFAYALANGTVGVYDRSQRL-   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCC----EEEEEecCCEEEEEeCccee-
Confidence            55666643   2 2689999999999999864  556667777788888777664    78999999999999874221 


Q ss_pred             eeeeeccccccCccccCeEEEEEc-CC--C-CEEEEEeCCCcEEE
Q 009203          453 EIHAFGWKQESSESQSALINQSWS-PD--G-LYITSGSADPVIHL  493 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~s-p~--g-~~l~sg~~dg~i~i  493 (540)
                       .+.       + ....++++++. .+  | .-|++|-.+|.|-+
T Consensus        75 -WRi-------K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   75 -WRI-------K-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             -eee-------c-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence             110       1 12235665543 33  3 35889988997743

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.28  E-value=0.19  Score=48.12  Aligned_cols=256  Identities=16%  Similarity=0.121  Sum_probs=123.6

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEEEeec---CCC
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFSAHTA---DSG  298 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~~---~~~  298 (540)
                      .-+.|+|.|| |++|++ ...|.|++++ ..+.....+. ...............++++|+   ..+|...++.   ...
T Consensus         3 ~P~~~a~~pd-G~l~v~-e~~G~i~~~~-~~g~~~~~v~-~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    3 NPRSMAFLPD-GRLLVA-ERSGRIWVVD-KDGSLKTPVA-DLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             SEEEEEEETT-SCEEEE-ETTTEEEEEE-TTTEECEEEE-E-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             CceEEEEeCC-CcEEEE-eCCceEEEEe-CCCcCcceec-ccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            4578999996 887665 5599999999 3333211221 111112344567899999994   3455554321   011


Q ss_pred             C--CeEEEEecCCCCC-----ceeEEeecC--CCCcccceeEEEEeCCCCCEEEEEecCC-------------cEEEEec
Q 009203          299 D--SQISVLNLNKTKG-----RACVTFLDD--KPHVKGIINSIIFLPWENPCFATGGSDH-------------AVVLWSE  356 (540)
Q Consensus       299 d--~~i~vwd~~~~~~-----~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~~~dg-------------~i~iwd~  356 (540)
                      .  ..|.-|.+..+..     ...+..+..  ...|  .-..|.|.| ++.++++.+..+             .|.-.+.
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H--~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~  155 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNH--NGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP  155 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS---EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCC--CCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecc
Confidence            2  2344454443200     111222222  1123  245699999 887777765432             2333333


Q ss_pred             CCCCCc---------cccceeecccCCcceeEEEeccC-CCEEEEEe-CCCeEEEEECCCCC------------------
Q 009203          357 RDAEDS---------WKPKALHRNLHSSAVMGVAGMQQ-KQIVLSAG-ADKRIIGFDAGVGR------------------  407 (540)
Q Consensus       357 ~~~~~~---------~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~-~dg~i~iwd~~~~~------------------  407 (540)
                      ...-..         .... +...++ .-...++|+|. |.++++-. .++.=.|--+..|.                  
T Consensus       156 dG~~p~dnP~~~~~~~~~~-i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~  233 (331)
T PF07995_consen  156 DGSIPADNPFVGDDGADSE-IYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPI  233 (331)
T ss_dssp             TSSB-TTSTTTTSTTSTTT-EEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-E
T ss_pred             cCcCCCCCccccCCCceEE-EEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcc
Confidence            221000         0001 111122 23457899998 65554422 12221222122211                  


Q ss_pred             -----------eeeeeccCccEEEEeecCCC----CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE
Q 009203          408 -----------ADFKHQIESKCMSVLPNPCD----FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN  472 (540)
Q Consensus       408 -----------~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~  472 (540)
                                 +...+.....+..+.+....    ..+.++++....+.|....+..........   ..+......+..
T Consensus       234 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~r~~~  310 (331)
T PF07995_consen  234 GDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE---EFLGGFGGRPRD  310 (331)
T ss_dssp             CTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---EECTTSSS-EEE
T ss_pred             ccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE---EccccCCCCceE
Confidence                       11112223344555554322    233577777777788888886554322211   122344557999


Q ss_pred             EEEcCCCCEEEEEeCCCcEE
Q 009203          473 QSWSPDGLYITSGSADPVIH  492 (540)
Q Consensus       473 ~~~sp~g~~l~sg~~dg~i~  492 (540)
                      +++.|||.++++-+.+|.|+
T Consensus       311 v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  311 VAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEETTSEEEEEE-TTTTEE
T ss_pred             EEEcCCCeEEEEECCCCeEe
Confidence            99999999998888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.27  E-value=0.077  Score=50.38  Aligned_cols=237  Identities=13%  Similarity=0.109  Sum_probs=111.1

Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV  352 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  352 (540)
                      |....+.=+|.++|+.|+.++.. .....+.+.|+.++   ...+.-.+.   ........++| +.+.++....+..|+
T Consensus        34 h~~YF~~~~ft~dG~kllF~s~~-dg~~nly~lDL~t~---~i~QLTdg~---g~~~~g~~~s~-~~~~~~Yv~~~~~l~  105 (386)
T PF14583_consen   34 HRLYFYQNCFTDDGRKLLFASDF-DGNRNLYLLDLATG---EITQLTDGP---GDNTFGGFLSP-DDRALYYVKNGRSLR  105 (386)
T ss_dssp             E---TTS--B-TTS-EEEEEE-T-TSS-EEEEEETTT----EEEE---SS----B-TTT-EE-T-TSSEEEEEETTTEEE
T ss_pred             cceeecCCCcCCCCCEEEEEecc-CCCcceEEEEcccC---EEEECccCC---CCCccceEEec-CCCeEEEEECCCeEE
Confidence            33445566789999866665221 23456777788875   334333321   12233466778 667776665567889


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEe--ccCCCEEEEEe----------------------CCCeEEEEECCCCCe
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAG--MQQKQIVLSAG----------------------ADKRIIGFDAGVGRA  408 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~--s~~~~~l~~~~----------------------~dg~i~iwd~~~~~~  408 (540)
                      -.|+.+.+.    ..+. ......+-...|  +.++..++-.-                      -...|...|+.+|+.
T Consensus       106 ~vdL~T~e~----~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~  180 (386)
T PF14583_consen  106 RVDLDTLEE----RVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER  180 (386)
T ss_dssp             EEETTT--E----EEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred             EEECCcCcE----EEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence            999998763    2222 223444444455  34555544321                      123467778898888


Q ss_pred             eeeeccCccEEEEeecCCCCCceEEEEEcC---CC-eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203          409 DFKHQIESKCMSVLPNPCDFNLFMVQTGTP---GR-QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS  484 (540)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  484 (540)
                      ...+.......-+.++|.++.  +|+-|-.   +. .-+||-+++.......+.  ..  .-...+..=-|.|||..|..
T Consensus       181 ~~v~~~~~wlgH~~fsP~dp~--li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~--~~--~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  181 KVVFEDTDWLGHVQFSPTDPT--LIMFCHEGPWDLVDQRIWTINTDGSNVKKVH--RR--MEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             EEEEEESS-EEEEEEETTEEE--EEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEEEEEE-TTSS-EEE
T ss_pred             eEEEecCccccCcccCCCCCC--EEEEeccCCcceeceEEEEEEcCCCcceeee--cC--CCCcccccccccCCCCEEEE
Confidence            777888888888999998764  4444322   22 125565554332222110  01  11223455579999987764


Q ss_pred             Ee-----CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203          485 GS-----ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       485 g~-----~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                      -+     .+..|.-+|+.+...+.+..+    ..-..+.-++||+++|--|.|
T Consensus       255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  255 DSYTPGGQDFWIAGYDPDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             EeecCCCCceEEEeeCCCCCCceEEEeC----CceeeeEEcCCCCEEEecCCC
Confidence            32     244566677776322222111    133455567899877765554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.24  E-value=0.074  Score=46.01  Aligned_cols=217  Identities=8%  Similarity=0.022  Sum_probs=114.1

Q ss_pred             CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC---CEEEEEecCCcEEEEecCCCCC--
Q 009203          287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN---PCFATGGSDHAVVLWSERDAED--  361 (540)
Q Consensus       287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~s~~~dg~i~iwd~~~~~~--  361 (540)
                      .++.+-    -..+.|.-||..+.+.  ....+++     .++.++.+-- .+   .+.+.++..-.|--||......  
T Consensus        28 sLl~VD----i~ag~v~r~D~~qn~v--~ra~ie~-----p~~ag~ilpv-~~~~q~~~v~~G~kf~i~nwd~~~~~a~v   95 (310)
T KOG4499|consen   28 SLLYVD----IEAGEVHRYDIEQNKV--YRAKIEG-----PPSAGFILPV-EGGPQEFAVGCGSKFVIVNWDGVSESAKV   95 (310)
T ss_pred             eEEEEE----eccCceehhhhhhhhe--EEEEEec-----CcceeEEEEe-cCCCceEEEeecceEEEEEcccccceeee
Confidence            345554    5677787899886522  2223332     1133333322 22   2334444434455576432211  


Q ss_pred             ccccceeecccCCcceeEEEeccCCCEEEEEeC----------CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce
Q 009203          362 SWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA----------DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       362 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (540)
                      ......+.........+.-..+|+|++++ |..          .|.++.|-.. ++.......-.-...+.|+.+..  .
T Consensus        96 ~~t~~ev~~d~kknR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K--~  171 (310)
T KOG4499|consen   96 YRTLFEVQPDRKKNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAK--K  171 (310)
T ss_pred             eeeccccCchHHhcccccCccCCCCceee-eeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCc--E
Confidence            00001111111234566677889999844 332          2345555443 22211122122234566774442  4


Q ss_pred             EEEEEcCCCeEEEEE--CCCCccee--eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc
Q 009203          432 MVQTGTPGRQLRLYD--IRLRQTEI--HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI  507 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d--~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~  507 (540)
                      +.++-+.+-.|.-||  ..++....  ..+..........-..-.++.+.+|++.++.-..|+|..+|..+  ++.+.++
T Consensus       172 fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t--GK~L~ei  249 (310)
T KOG4499|consen  172 FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT--GKILLEI  249 (310)
T ss_pred             EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCC--CcEEEEE
Confidence            566777788887788  44443211  11111111000111233456677888888888889999999998  8888888


Q ss_pred             cccccceeEEEEcC
Q 009203          508 RAHQKRVFKAVWHY  521 (540)
Q Consensus       508 ~~h~~~i~~l~~s~  521 (540)
                      .-....|++++|--
T Consensus       250 klPt~qitsccFgG  263 (310)
T KOG4499|consen  250 KLPTPQITSCCFGG  263 (310)
T ss_pred             EcCCCceEEEEecC
Confidence            88888999999953

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.23  E-value=0.21  Score=47.78  Aligned_cols=249  Identities=15%  Similarity=0.069  Sum_probs=118.2

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeec-CCCCcccceeEEEEeCC---CCCEEEEEecC----
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLD-DKPHVKGIINSIIFLPW---ENPCFATGGSD----  348 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~---~~~~l~s~~~d----  348 (540)
                      .++|+|.|||++|++-     ..|.|++++.. +.....+..+. ...........++++|.   ++.+.++.+..    
T Consensus         4 P~~~a~~pdG~l~v~e-----~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~   77 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVAE-----RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG   77 (331)
T ss_dssp             EEEEEEETTSCEEEEE-----TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred             ceEEEEeCCCcEEEEe-----CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence            4689999999888874     69999999933 32112233331 11223455899999982   23333433321    


Q ss_pred             ----CcEEEEecCCCC-Cccccceee-c--c--cCCcceeEEEeccCCCEEEEEeCC-------------CeEEEEECCC
Q 009203          349 ----HAVVLWSERDAE-DSWKPKALH-R--N--LHSSAVMGVAGMQQKQIVLSAGAD-------------KRIIGFDAGV  405 (540)
Q Consensus       349 ----g~i~iwd~~~~~-~~~~~~~~~-~--~--~~~~~v~~l~~s~~~~~l~~~~~d-------------g~i~iwd~~~  405 (540)
                          ..|.-|....+. .......+. .  .  .....-..|.|.|||.+.++.+..             |.|.-.+.. 
T Consensus        78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-  156 (331)
T PF07995_consen   78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-  156 (331)
T ss_dssp             SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-
T ss_pred             CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-
Confidence                234444443331 101011111 1  1  122335669999999777766543             234444433 


Q ss_pred             CCee-------------eee-ccCccEEEEeecCCCCCceEEEE-EcCCCeEEEEECCCCcceee---e---------e-
Q 009203          406 GRAD-------------FKH-QIESKCMSVLPNPCDFNLFMVQT-GTPGRQLRLYDIRLRQTEIH---A---------F-  457 (540)
Q Consensus       406 ~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~v~i~d~~~~~~~~~---~---------~-  457 (540)
                      ++..             ..+ ..--....++|+|...  .++++ .+.++.=.|.-+..+..-..   .         . 
T Consensus       157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg--~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~  234 (331)
T PF07995_consen  157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTG--RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG  234 (331)
T ss_dssp             SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTT--EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred             CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCC--cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence            2210             000 0112345678888721  23332 22222222222222110000   0         0 


Q ss_pred             ---------ccccccCccccCeEEEEEcC-------CCCEEEEEeCCCcEEEEeccCCCCccc--cc-ccccccceeEEE
Q 009203          458 ---------GWKQESSESQSALINQSWSP-------DGLYITSGSADPVIHLFDIRYSANKPS--QS-IRAHQKRVFKAV  518 (540)
Q Consensus       458 ---------~~~~~~~~~~~~v~~~~~sp-------~g~~l~sg~~dg~i~iwd~~~~~~~~~--~~-~~~h~~~i~~l~  518 (540)
                               .....+ .+...++.+.|-.       .|.++++.-..+.|....+... +...  .. +......+..|+
T Consensus       235 ~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~r~~~v~  312 (331)
T PF07995_consen  235 DAPSCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED-GSVTEEEEFLGGFGGRPRDVA  312 (331)
T ss_dssp             TGSS-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT-EEEEEEEEECTTSSS-EEEEE
T ss_pred             cccCCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC-CCccceEEccccCCCCceEEE
Confidence                     000011 2335667777753       3556666666678888887642 2211  11 233444799999


Q ss_pred             EcCCCCEEEEEEcCCcEE
Q 009203          519 WHYSHPLLISISSDLNIG  536 (540)
Q Consensus       519 ~s~~~~~l~s~~~dg~v~  536 (540)
                      +.|||.+.++.+.+|.|.
T Consensus       313 ~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  313 QGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EETTSEEEEEE-TTTTEE
T ss_pred             EcCCCeEEEEECCCCeEe
Confidence            999999999988899774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.22  E-value=0.13  Score=47.95  Aligned_cols=209  Identities=10%  Similarity=0.026  Sum_probs=115.5

Q ss_pred             EEEEEecCCCcEEEEEe--CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCCCCCeEE
Q 009203          227 RSLSLNPVNEQLFVTSA--LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDSQIS  303 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~~i~  303 (540)
                      ..++++.| +++++...  =-.+|.|-|+...+.+..+...      |      |.-..|.+ +.+.+.    +.||.+.
T Consensus        98 ~~~~ls~d-gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P------G------C~~iyP~~~~~F~~l----C~DGsl~  160 (342)
T PF06433_consen   98 NMFALSAD-GKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP------G------CWLIYPSGNRGFSML----CGDGSLL  160 (342)
T ss_dssp             GGEEE-TT-SSEEEEEEESSSEEEEEEETTTTEEEEEEEGT------S------EEEEEEEETTEEEEE----ETTSCEE
T ss_pred             cceEEccC-CcEEEEEccCCCCeEEEEECCCCceeeeecCC------C------EEEEEecCCCceEEE----ecCCceE
Confidence            44577775 67666653  2356888888887665544321      1      33333433 345555    6899999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccce--eec----cc-CCcc
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA--LHR----NL-HSSA  376 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~----~~-~~~~  376 (540)
                      ...++..........--........+..-++.. .+..++--+.+|.|+--|+...........  +..    .+ ..+.
T Consensus       161 ~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG  239 (342)
T PF06433_consen  161 TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG  239 (342)
T ss_dssp             EEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred             EEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence            998884322221111111111122233445555 555566678889999988887653111100  000    00 1122


Q ss_pred             eeEEEeccCCCEEEEEeC--------CC--eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203          377 VMGVAGMQQKQIVLSAGA--------DK--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD  446 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d  446 (540)
                      -.-+++++..+.|++.-.        |+  .|.++|+.+++.+........+.++..+.++.- .+++....++.+.+||
T Consensus       240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P-~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKP-LLYALSAGDGTLDVYD  318 (342)
T ss_dssp             SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS--EEEEEETTTTEEEEEE
T ss_pred             eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCc-EEEEEcCCCCeEEEEe
Confidence            334677665555544221        11  488889999999988887777777777765532 3444556789999999


Q ss_pred             CCCCccee
Q 009203          447 IRLRQTEI  454 (540)
Q Consensus       447 ~~~~~~~~  454 (540)
                      ..+++...
T Consensus       319 ~~tGk~~~  326 (342)
T PF06433_consen  319 AATGKLVR  326 (342)
T ss_dssp             TTT--EEE
T ss_pred             CcCCcEEe
Confidence            99987543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.19  E-value=0.04  Score=56.63  Aligned_cols=209  Identities=12%  Similarity=0.083  Sum_probs=112.9

Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC------CcEEEEecCCCCCccccceeecccC
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD------HAVVLWSERDAEDSWKPKALHRNLH  373 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~  373 (540)
                      ..+..+|..++.. .....+.    ....-.++++.  ++.+.++||.|      .++..||..+.+-.. ...+....+
T Consensus       301 ~~ve~yd~~~~~w-~~~a~m~----~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~  372 (571)
T KOG4441|consen  301 RSVECYDPKTNEW-SSLAPMP----SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRS  372 (571)
T ss_pred             ceeEEecCCcCcE-eecCCCC----cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccc
Confidence            4677888876522 1111121    12224455555  56888999988      357788988876311 111111111


Q ss_pred             CcceeEEEeccCCCEEEEEeCCCe-----EEEEECCCCCeeeeeccCc---cEEEEeecCCCCCceEEEEEcCCC-----
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKR-----IIGFDAGVGRADFKHQIES---KCMSVLPNPCDFNLFMVQTGTPGR-----  440 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg-----  440 (540)
                      .   .+++. -+|.+.++|+.||.     +-.||..+.+-........   ......+..     .+.++|+.++     
T Consensus       373 ~---~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g-----~iYi~GG~~~~~~~l  443 (571)
T KOG4441|consen  373 D---FGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGG-----KLYIIGGGDGSSNCL  443 (571)
T ss_pred             c---ceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECC-----EEEEEcCcCCCcccc
Confidence            1   12222 25788888998874     7888888765433322211   111222222     5666776443     


Q ss_pred             -eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCc-----EEEEeccCCCCcccccccccccce
Q 009203          441 -QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPV-----IHLFDIRYSANKPSQSIRAHQKRV  514 (540)
Q Consensus       441 -~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~-----i~iwd~~~~~~~~~~~~~~h~~~i  514 (540)
                       ++..||..+..=...     .....-........+  ++.+.+.||.|+.     |..||..+.....+..+......+
T Consensus       444 ~sve~YDP~t~~W~~~-----~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~  516 (571)
T KOG4441|consen  444 NSVECYDPETNTWTLI-----APMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV  516 (571)
T ss_pred             ceEEEEcCCCCceeec-----CCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence             577888876541110     011111112222333  7788888988773     777888875455555455444444


Q ss_pred             eEEEEcCCCCEEEEEEcCCc
Q 009203          515 FKAVWHYSHPLLISISSDLN  534 (540)
Q Consensus       515 ~~l~~s~~~~~l~s~~~dg~  534 (540)
                      ....+  ++...+.||.||.
T Consensus       517 g~~~~--~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  517 GVVVL--GGKLYAVGGFDGN  534 (571)
T ss_pred             cEEEE--CCEEEEEecccCc
Confidence            44444  6677888888764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.15  E-value=0.026  Score=49.46  Aligned_cols=110  Identities=14%  Similarity=0.056  Sum_probs=77.8

Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc
Q 009203          386 KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE  465 (540)
Q Consensus       386 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  465 (540)
                      ..+++.|+..+.+.-.|..+|........+..+-+-+.--.    .+++.|...|.+++.+.+++.........      
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvg----dfVV~GCy~g~lYfl~~~tGs~~w~f~~~------   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVG----DFVVLGCYSGGLYFLCVKTGSQIWNFVIL------   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEEC----CEEEEEEccCcEEEEEecchhheeeeeeh------
Confidence            46778888999999999999988776555544443222222    37999999999999999998754433210      


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203          466 SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR  508 (540)
Q Consensus       466 ~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  508 (540)
                       ..--......+++..+..|+.|+..+..|..+  ..++...+
T Consensus        93 -~~vk~~a~~d~~~glIycgshd~~~yalD~~~--~~cVyksk  132 (354)
T KOG4649|consen   93 -ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT--YGCVYKSK  132 (354)
T ss_pred             -hhhccceEEcCCCceEEEecCCCcEEEecccc--cceEEecc
Confidence             11112335677999999999999999999987  45555544

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.13  E-value=0.29  Score=47.61  Aligned_cols=45  Identities=13%  Similarity=0.073  Sum_probs=37.1

Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc
Q 009203          466 SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK  512 (540)
Q Consensus       466 ~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~  512 (540)
                      ....+.+++.+|++++.|+...=|.|.++|+..  +..++.++|..+
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~--~~vvrmWKGYRd  350 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVAR--GIVVRMWKGYRD  350 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCC--ChhhhhhccCcc
Confidence            344578899999999999988889999999998  777888876544

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.11  E-value=0.092  Score=54.06  Aligned_cols=160  Identities=13%  Similarity=0.135  Sum_probs=85.9

Q ss_pred             ccCceEEEEEecCCCcEEEEEe------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSA------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      ....+...+++|| |..+|...      .|+.-.||-...+.....+.       .+.  ..+.-.|+|+|..|++....
T Consensus       348 ~~~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-------~g~--~~t~PsWspDG~~lw~v~dg  417 (591)
T PRK13616        348 QMGNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-------EGH--SLTRPSWSLDADAVWVVVDG  417 (591)
T ss_pred             cccCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-------cCC--CCCCceECCCCCceEEEecC
Confidence            3356889999997 65555443      34445555544333222221       121  26788999998877776100


Q ss_pred             --------CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE---EecCCCCC-cc
Q 009203          296 --------DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL---WSERDAED-SW  363 (540)
Q Consensus       296 --------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i---wd~~~~~~-~~  363 (540)
                              ....+.+.+.+++.+..   ...      ..+.|..+.|+| ||..++... +|.|++   -....+.. +.
T Consensus       418 ~~~~~v~~~~~~gql~~~~vd~ge~---~~~------~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~  486 (591)
T PRK13616        418 NTVVRVIRDPATGQLARTPVDASAV---ASR------VPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALT  486 (591)
T ss_pred             cceEEEeccCCCceEEEEeccCchh---hhc------cCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeec
Confidence                    01122333334433211   101      135699999999 999887765 477777   44334431 10


Q ss_pred             ccceeecccCCcceeEEEeccCCCEEEEEeCCCe--EEEEECC
Q 009203          364 KPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKR--IIGFDAG  404 (540)
Q Consensus       364 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~--i~iwd~~  404 (540)
                      .+..+. ..-...+.++.|..++.++ ++..++.  +...++.
T Consensus       487 ~~~~l~-~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vD  527 (591)
T PRK13616        487 NPREVG-PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLD  527 (591)
T ss_pred             ccEEee-cccCCccccceEecCCEEE-EEecCCCCceEEEecC
Confidence            111111 1233346889999888855 5454443  4444444

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=97.11  E-value=0.38  Score=51.78  Aligned_cols=168  Identities=10%  Similarity=0.096  Sum_probs=101.4

Q ss_pred             CCCceeEEEe---c----CCCeEEEEeecCCCCCeEEEEecC------CCCC------ceeEEeecCCCCcccceeEEEE
Q 009203          274 RRWPEDIAWH---P----QGNSLFSAHTADSGDSQISVLNLN------KTKG------RACVTFLDDKPHVKGIINSIIF  334 (540)
Q Consensus       274 ~~~V~~~~~~---~----~~~~l~s~~~~~~~d~~i~vwd~~------~~~~------~~~~~~~~~~~~~~~~v~~~~~  334 (540)
                      ..+|..|+|.   .    ..++|++     -....+.|+...      ....      ...+..+........+...++|
T Consensus        79 ~~PI~qI~fa~~~~~~~~~~~~l~V-----rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~F  153 (765)
T PF10214_consen   79 GSPIKQIKFATLSESFDEKSRWLAV-----RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAF  153 (765)
T ss_pred             CCCeeEEEecccccccCCcCcEEEE-----EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEe
Confidence            4567778887   2    2236665     456667777621      1110      1122222221112346778999


Q ss_pred             eCCCCCEEEEEecCCcEEEEecCCCCCc--ccccee--------ecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203          335 LPWENPCFATGGSDHAVVLWSERDAEDS--WKPKAL--------HRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG  404 (540)
Q Consensus       335 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~--------~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~  404 (540)
                      +|++...||.....|...|||+......  ......        ......+.-..+.|.++.+.|++++. ..+.++|+.
T Consensus       154 nP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~  232 (765)
T PF10214_consen  154 NPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFE  232 (765)
T ss_pred             ccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECC
Confidence            9999999999999999999999221110  001110        00011133447889888778887766 478999999


Q ss_pred             CCCe---eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          405 VGRA---DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       405 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      +...   +........+..+.-+|.+....+++|.   ..|...|+...
T Consensus       233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs---~eiiw~~~~~~  278 (765)
T PF10214_consen  233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS---KEIIWLDVKSS  278 (765)
T ss_pred             CCCccchhccCCChhheeeEEecCCccceEEEEec---CeEEEEEccCC
Confidence            8765   2233445678888888886554445542   57888888873

These proteins are found in fungi.

>PHA02713 hypothetical protein; Provisional

Probab=97.02  E-value=0.068  Score=55.09  Aligned_cols=183  Identities=8%  Similarity=0.041  Sum_probs=94.2

Q ss_pred             CCCEEEEEecC------CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC-----eEEEEECCCC
Q 009203          338 ENPCFATGGSD------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK-----RIIGFDAGVG  406 (540)
Q Consensus       338 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~  406 (540)
                      ++.+++.||.+      ..+..||..+...    ..+........-.+++. -+|...+.|+.++     .+..||..++
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W----~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIH----VELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeE----eeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCC
Confidence            66778888754      3477888877642    11110001111112222 2577778887754     4888998876


Q ss_pred             CeeeeeccCc---cEEEEeecCCCCCceEEEEEcCC-----------------------CeEEEEECCCCcceeeeeccc
Q 009203          407 RADFKHQIES---KCMSVLPNPCDFNLFMVQTGTPG-----------------------RQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       407 ~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d-----------------------g~v~i~d~~~~~~~~~~~~~~  460 (540)
                      +-........   ....+...  +   .+.+.|+.+                       ..+..||..+..=  ...   
T Consensus       378 ~W~~~~~mp~~r~~~~~~~~~--g---~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W--~~v---  447 (557)
T PHA02713        378 KWKMLPDMPIALSSYGMCVLD--Q---YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW--ETL---  447 (557)
T ss_pred             eEEECCCCCcccccccEEEEC--C---EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE--eec---
Confidence            4322211111   11112222  2   456666544                       2477788765431  100   


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEeCCC------cEEEEeccC-CCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203          461 QESSESQSALINQSWSPDGLYITSGSADP------VIHLFDIRY-SANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg------~i~iwd~~~-~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      ..+.........+++  +|++.+.|+.++      .+..||..+ .....+..+.........+++  +|++.++||.||
T Consensus       448 ~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~  523 (557)
T PHA02713        448 PNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYES  523 (557)
T ss_pred             CCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecc
Confidence            011111111122233  677777777542      467899886 445555555544433444444  788899999888


Q ss_pred             --cEEEEe
Q 009203          534 --NIGLHK  539 (540)
Q Consensus       534 --~v~iw~  539 (540)
                        .+..||
T Consensus       524 ~~~~e~yd  531 (557)
T PHA02713        524 YMLQDTFN  531 (557)
T ss_pred             eeehhhcC
Confidence              454444

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.01  E-value=0.11  Score=53.65  Aligned_cols=188  Identities=10%  Similarity=0.023  Sum_probs=102.4

Q ss_pred             CCceeEEEecCCCeEEEEeec--CCCCC--eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC--
Q 009203          275 RWPEDIAWHPQGNSLFSAHTA--DSGDS--QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD--  348 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~--~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--  348 (540)
                      ..+.+.+++|+|+.++.....  +..|.  .|.+++...  ..  .....+     .....-.|+| ++..|++....  
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~--~~lt~g-----~~~t~PsWsp-DG~~lw~v~dg~~  419 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VA--VQVLEG-----HSLTRPSWSL-DADAVWVVVDGNT  419 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cc--eeeecC-----CCCCCceECC-CCCceEEEecCcc
Confidence            467899999999988876211  01233  455555432  11  222232     2377889999 87777666432  


Q ss_pred             ----------CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEE---EECCCCCeee-----
Q 009203          349 ----------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIG---FDAGVGRADF-----  410 (540)
Q Consensus       349 ----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~i---wd~~~~~~~~-----  410 (540)
                                +.+.+.+++.+..    ..    ...+.|..+.|||||..++... +|.|++   -....|....     
T Consensus       420 ~~~v~~~~~~gql~~~~vd~ge~----~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~  490 (591)
T PRK13616        420 VVRVIRDPATGQLARTPVDASAV----AS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE  490 (591)
T ss_pred             eEEEeccCCCceEEEEeccCchh----hh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE
Confidence                      2333334444432    11    1346799999999999988776 467777   4544454211     


Q ss_pred             -eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC
Q 009203          411 -KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP  489 (540)
Q Consensus       411 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg  489 (540)
                       .........++.|..++   . |+++..++...+|.+.-.......+    .......++..|+-+++  .|+....+|
T Consensus       491 l~~~l~~~~~~l~W~~~~---~-L~V~~~~~~~~v~~v~vDG~~~~~~----~~~n~~~~v~~vaa~~~--~iyv~~~~g  560 (591)
T PRK13616        491 VGPGLGDTAVSLDWRTGD---S-LVVGRSDPEHPVWYVNLDGSNSDAL----PSRNLSAPVVAVAASPS--TVYVTDARA  560 (591)
T ss_pred             eecccCCccccceEecCC---E-EEEEecCCCCceEEEecCCcccccc----CCCCccCceEEEecCCc--eEEEEcCCc
Confidence             11223345778888877   3 4454444444444443222111100    00112456777777763  455556666


Q ss_pred             cE
Q 009203          490 VI  491 (540)
Q Consensus       490 ~i  491 (540)
                      .+
T Consensus       561 ~~  562 (591)
T PRK13616        561 VL  562 (591)
T ss_pred             eE
Confidence            33

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.00  E-value=0.62  Score=49.05  Aligned_cols=286  Identities=9%  Similarity=0.013  Sum_probs=148.6

Q ss_pred             cCceEEEEEecC--CCc---EEEEEeCCceEEEEEcCCCCCcceee-cccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          223 KRKLRSLSLNPV--NEQ---LFVTSALDGVIRLWQLQSRGSGASLL-STTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       223 ~~~V~~l~~spd--~~~---~l~tg~~dg~v~iw~~~~~~~~~~~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      ...|.|+.++|-  +.+   +++.|.++..+.+--........... ...    +.-...|.-..|-.|..+|.++    
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~----~~iPRSIl~~~~e~d~~yLlva----  601 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG----EIIPRSILLTTFEGDIHYLLVA----  601 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC----CccchheeeEEeeccceEEEEE----
Confidence            468999999973  333   89999988877665443322211110 110    1122335556666678899999    


Q ss_pred             CCCCeEEEEecCCCCCc--eeE-EeecCCCCcccceeEEEEeCCCC----------------------------------
Q 009203          297 SGDSQISVLNLNKTKGR--ACV-TFLDDKPHVKGIINSIIFLPWEN----------------------------------  339 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~--~~~-~~~~~~~~~~~~v~~~~~~p~~~----------------------------------  339 (540)
                      ..||.+..|.++.....  ... ..+.     ..++.--.|+....                                  
T Consensus       602 lgdG~l~~fv~d~~tg~lsd~Kk~~lG-----t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c  676 (1096)
T KOG1897|consen  602 LGDGALLYFVLDINTGQLSDRKKVTLG-----TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMC  676 (1096)
T ss_pred             cCCceEEEEEEEcccceEccccccccC-----CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhc
Confidence            99999987755433210  000 0111     11111112221111                                  


Q ss_pred             --------CEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC--------------Ce
Q 009203          340 --------PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD--------------KR  397 (540)
Q Consensus       340 --------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d--------------g~  397 (540)
                              ..++++. .+.+.+.-++.-+.+. .+++.   -......+++.+....+.+.+..              ..
T Consensus       677 ~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~-irtvp---l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~  751 (1096)
T KOG1897|consen  677 PFNSDAYPDSLASAN-GGALTIGTIDEIQKLH-IRTVP---LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSF  751 (1096)
T ss_pred             ccccccCCceEEEec-CCceEEEEecchhhcc-eeeec---CCCChhheEecccceEEEEEecccccchhhcCCcceEEE
Confidence                    1122222 2334444333221100 11111   22344566666533344433221              14


Q ss_pred             EEEEECCCCCeeeeeccCc-----cEEEEeecCCCCCceEEEEEcC----------CCeEEEEECCCCcceeeeeccccc
Q 009203          398 IIGFDAGVGRADFKHQIES-----KCMSVLPNPCDFNLFMVQTGTP----------GRQLRLYDIRLRQTEIHAFGWKQE  462 (540)
Q Consensus       398 i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~  462 (540)
                      ++++|-.+-+.+..++...     .+.+..|..+..  .++++|..          .|.|.+|.+...+.... .    .
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~--t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~-v----~  824 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPN--TYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL-V----A  824 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCc--eEEEEEEEeeccCCCCcccceEEEEEEecCCceee-e----e
Confidence            7888888777766555432     233344554421  46666642          46777777766221111 1    0


Q ss_pred             cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          463 SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      -..-.+.+.++..- +|++||.-  +..|++|+...  .+.++.-..|..++..+...-.|..++.|..=+.|.+-
T Consensus       825 e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~--~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll  895 (1096)
T KOG1897|consen  825 ETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTT--ERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL  895 (1096)
T ss_pred             eeeeccceeehhhh-CCeEEEec--CcEEEEEEccc--cceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence            01112344444221 67777654  56799999997  55666666777888888888888889888766666553

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.96  E-value=0.32  Score=45.21  Aligned_cols=226  Identities=17%  Similarity=0.178  Sum_probs=124.1

Q ss_pred             cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcc
Q 009203          284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSW  363 (540)
Q Consensus       284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  363 (540)
                      ..++.|+.|    ..+| |.++++...  ........     ...|..+...| +-+.+++-+ |+.++++++..-....
T Consensus         5 ~~~~~L~vG----t~~G-l~~~~~~~~--~~~~~i~~-----~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~   70 (275)
T PF00780_consen    5 SWGDRLLVG----TEDG-LYVYDLSDP--SKPTRILK-----LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVS   70 (275)
T ss_pred             cCCCEEEEE----ECCC-EEEEEecCC--ccceeEee-----cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccc
Confidence            357788888    7888 899988322  12233332     23499999998 666665554 5999999998655322


Q ss_pred             cccee---------ecccCCcceeEEE--eccCCCEEEEEeCCCeEEEEECCCC-----CeeeeeccCccEEEEeecCCC
Q 009203          364 KPKAL---------HRNLHSSAVMGVA--GMQQKQIVLSAGADKRIIGFDAGVG-----RADFKHQIESKCMSVLPNPCD  427 (540)
Q Consensus       364 ~~~~~---------~~~~~~~~v~~l~--~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~  427 (540)
                      .....         ........+..++  -...+...++......|.+|.....     +..........+..+.|.+  
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--  148 (275)
T PF00780_consen   71 TSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--  148 (275)
T ss_pred             ccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--
Confidence            11000         0111233444444  1233444444455558888877653     3445567778888888885  


Q ss_pred             CCceEEEEEcCCCeEEEEECCCCcceeeeecccc------ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC
Q 009203          428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ------ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN  501 (540)
Q Consensus       428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~  501 (540)
                         ..++.|.. ....+.|+.++..... +....      .......++..+..+ ++.+|++.  |..-.+.|..   +
T Consensus       149 ---~~i~v~~~-~~f~~idl~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~---G  217 (275)
T PF00780_consen  149 ---NKICVGTS-KGFYLIDLNTGSPSEL-LDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN---G  217 (275)
T ss_pred             ---CEEEEEeC-CceEEEecCCCCceEE-eCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC---C
Confidence               35666664 4578889986553211 11000      001112234444443 45666654  3334444554   3


Q ss_pred             cccc--cccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          502 KPSQ--SIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       502 ~~~~--~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .+.+  .+.- ...+.++++  ..++|+..+.+ .|.||++
T Consensus       218 ~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~~-~iEV~~~  254 (275)
T PF00780_consen  218 EPSRKSTIQW-SSAPQSVAY--SSPYLIAFSSN-SIEVRSL  254 (275)
T ss_pred             CcCcccEEEc-CCchhEEEE--ECCEEEEECCC-EEEEEEC
Confidence            3333  2221 224566666  44688877654 4999875

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.03  Score=54.13  Aligned_cols=143  Identities=14%  Similarity=0.133  Sum_probs=91.6

Q ss_pred             CCCEEE-EEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce----EEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          385 QKQIVL-SAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF----MVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       385 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      +.++|+ ++.....++-.|+..|+.+.....+..+.-+.+.|+....+    --+.|-.++.|.-||.+-.......+  
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~--  421 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV--  421 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee--
Confidence            444444 34455678888999999987766665555555555432211    22456678899999998544311110  


Q ss_pred             cccc-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203          460 KQES-SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       460 ~~~~-~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                      .+.. -.......|.+-..+| +|++|+.+|.|++||--.  ...-..+++-..+|..+..+.+|++|+..+..
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~--~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG--RRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             eeccccccccccceeeecCCc-eEEEeecCCcEEeehhhh--hhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            1000 0112234455554444 899999999999999843  44455677888899999999999988776643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.92  E-value=0.29  Score=44.02  Aligned_cols=186  Identities=11%  Similarity=0.051  Sum_probs=109.0

Q ss_pred             eEEEEEecCCCcEEEEEeCCc--eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          226 LRSLSLNPVNEQLFVTSALDG--VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ...+.|..+ +.++-+.+.-|  .|+.+|+.+++...........+       --.++...+.-+.++     -.++...
T Consensus        47 TQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F-------gEGit~~~d~l~qLT-----Wk~~~~f  113 (264)
T PF05096_consen   47 TQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF-------GEGITILGDKLYQLT-----WKEGTGF  113 (264)
T ss_dssp             EEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---------EEEEEEETTEEEEEE-----SSSSEEE
T ss_pred             CccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc-------ceeEEEECCEEEEEE-----ecCCeEE
Confidence            567888664 78888877666  68999999987654443322221       123555533223333     6899999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      +||..+-   +.+..+.-    .+.=+.++.   ++..|+.......++++|..+-+....+........-..++.+.|.
T Consensus       114 ~yd~~tl---~~~~~~~y----~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i  183 (264)
T PF05096_consen  114 VYDPNTL---KKIGTFPY----PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI  183 (264)
T ss_dssp             EEETTTT---EEEEEEE-----SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred             EEccccc---eEEEEEec----CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence            9999875   44555543    234577774   5556665555678999998876643333322211123456677776


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeeeecc----------------CccEEEEeecCCCCCceEEEEEc
Q 009203          384 QQKQIVLSAGADKRIIGFDAGVGRADFKHQI----------------ESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                       +|...+-.=....|...|..+|+.......                ..-...++++|...  .+++||-
T Consensus       184 -~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~--~l~vTGK  250 (264)
T PF05096_consen  184 -NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD--RLFVTGK  250 (264)
T ss_dssp             -TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT--EEEEEET
T ss_pred             -cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC--EEEEEeC
Confidence             676666666677888999999987543211                23466899988764  5777774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.84  E-value=0.5  Score=48.78  Aligned_cols=230  Identities=13%  Similarity=0.115  Sum_probs=118.9

Q ss_pred             CCcEEEEEeCC------ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC------CeE
Q 009203          235 NEQLFVTSALD------GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD------SQI  302 (540)
Q Consensus       235 ~~~~l~tg~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d------~~i  302 (540)
                      .+.+++.|+.+      ..+..+|..++..  ......     .+...-.+++... |...++|    +.|      .++
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w--~~~a~m-----~~~r~~~~~~~~~-~~lYv~G----G~~~~~~~l~~v  351 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEW--SSLAPM-----PSPRCRVGVAVLN-GKLYVVG----GYDSGSDRLSSV  351 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcE--eecCCC-----CcccccccEEEEC-CEEEEEc----cccCCCcccceE
Confidence            35667777766      3577888777632  111111     1112233455553 4556666    556      467


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc-----EEEEecCCCCCccccceeecccCCcce
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA-----VVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      ..||..+++-.. +..+..   ..... +++..  +|.+.|+||.||.     |-.||..+.+........   ......
T Consensus       352 e~YD~~~~~W~~-~a~M~~---~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---~~r~~~  421 (571)
T KOG4441|consen  352 ERYDPRTNQWTP-VAPMNT---KRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---TRRSGH  421 (571)
T ss_pred             EEecCCCCceec-cCCccC---ccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCC---cceeee
Confidence            788888763211 111211   11112 22222  7889999999864     778888877631111110   011111


Q ss_pred             eEEEeccCCCEEEEEeCCC------eEEEEECCCCCeeeeecc--CccEEEEeecCCCCCceEEEEEcCCC-----eEEE
Q 009203          378 MGVAGMQQKQIVLSAGADK------RIIGFDAGVGRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPGR-----QLRL  444 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg-----~v~i  444 (540)
                      ..+.+  +|.+.++|+.++      ++..||..++.-......  .-....++.-..    .+.+.|+.|+     +|..
T Consensus       422 gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~----~iYvvGG~~~~~~~~~VE~  495 (571)
T KOG4441|consen  422 GVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNG----KIYVVGGFDGTSALSSVER  495 (571)
T ss_pred             EEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECC----EEEEECCccCCCccceEEE
Confidence            22222  678888888554      578899887765332211  111112222221    5777777766     3777


Q ss_pred             EECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEeccCC
Q 009203          445 YDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-----VIHLFDIRYS  499 (540)
Q Consensus       445 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-----~i~iwd~~~~  499 (540)
                      ||..+.+=...     .........+..+.+  ++...++|+.||     +|..||..+.
T Consensus       496 ydp~~~~W~~v-----~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  496 YDPETNQWTMV-----APMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             EcCCCCceeEc-----ccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence            88876542111     112222333333344  677788888776     4666766653

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.76  E-value=0.0042  Score=64.81  Aligned_cols=99  Identities=17%  Similarity=0.235  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      ..++.|+..|.|-.+|+...-....      ....-.++|++++|+.+|..++.|-.+|.|.+||+..  +++++.+..|
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~------~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~--~k~l~~i~e~  171 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLH------QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR--AKILKVITEH  171 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhh------cCCccCCcceeeEecCCCceeccccCCCcEEEEEccC--Ccceeeeeec
Confidence            3688899999999999875422111      1223467899999999999999999999999999997  6777777766


Q ss_pred             ccceeEE---EEcCCCCEEEEEEcCCcEEEEe
Q 009203          511 QKRVFKA---VWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       511 ~~~i~~l---~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ..+.+++   .|..++..+.++...|.  +|+
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            6655544   44556667888877775  554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.73  E-value=0.045  Score=48.79  Aligned_cols=116  Identities=15%  Similarity=0.138  Sum_probs=81.6

Q ss_pred             CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCe-EEEEECCCCcceeeeecc-ccccCccccCeEEEEEcCCCCEEE
Q 009203          406 GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ-LRLYDIRLRQTEIHAFGW-KQESSESQSALINQSWSPDGLYIT  483 (540)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-v~i~d~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~  483 (540)
                      |+++........+..+.++|..+  .-++.+-.-|+ ..+||..+.+.+...... ...+-+|.      .|||||.+|.
T Consensus        58 Gk~v~~~~lpaR~Hgi~~~p~~~--ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LY  129 (366)
T COG3490          58 GKIVFATALPARGHGIAFHPALP--RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLY  129 (366)
T ss_pred             CceeeeeecccccCCeecCCCCc--ceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEE
Confidence            55555666666777788888664  35555555554 678999887755433211 11223343      7999999998


Q ss_pred             EEeCC-----CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          484 SGSAD-----PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       484 sg~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ..-.|     |.|-|||.+.. ...+..+..|.-....+.|.+||+.|+.+.
T Consensus       130 ATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         130 ATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             eecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeC
Confidence            76443     78999999964 567888888888889999999999888763

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.72  E-value=0.67  Score=45.32  Aligned_cols=154  Identities=8%  Similarity=0.102  Sum_probs=89.7

Q ss_pred             cCCCcEEEEEeCCceEEEEEcCCCCCc-ceeecccccCCCCCCCCceeEEEec-----CCCeEEEEeecCCCCCeEEEEe
Q 009203          233 PVNEQLFVTSALDGVIRLWQLQSRGSG-ASLLSTTDCLSPKHRRWPEDIAWHP-----QGNSLFSAHTADSGDSQISVLN  306 (540)
Q Consensus       233 pd~~~~l~tg~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~-----~~~~l~s~~~~~~~d~~i~vwd  306 (540)
                      +++...+++|+..|.++||+....+.. ..+...     ..-..+|..++.-.     +...||+     -.-..+.||.
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-----~~l~~PILqv~~G~F~s~~~~~~LaV-----LhP~kl~vY~  103 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-----TQLKDPILQVECGKFVSGSEDLQLAV-----LHPRKLSVYS  103 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEE-----EecCCcEEEEEeccccCCCCcceEEE-----ecCCEEEEEE
Confidence            334678999999999999998654421 112111     12345677776532     2335555     4678888888


Q ss_pred             cCCCCCc------eeEEeecCCCCcccceeEEEEeCC---C-CCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          307 LNKTKGR------ACVTFLDDKPHVKGIINSIIFLPW---E-NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       307 ~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~p~---~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +....+.      ..+..+..+.- ......+++-|-   . ..+|..-+.||.+.+|+-+.-..    ... .. ..--
T Consensus       104 v~~~~g~~~~g~~~~L~~~yeh~l-~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----~~~-lp-~~ll  176 (418)
T PF14727_consen  104 VSLVDGTVEHGNQYQLELIYEHSL-QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----SRF-LP-DFLL  176 (418)
T ss_pred             EEecCCCcccCcEEEEEEEEEEec-ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----EEE-cC-CCCC
Confidence            7432211      12222222111 112333433331   2 46788889999999999876431    111 01 1222


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEEC
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDA  403 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~  403 (540)
                      ...++|.+..+.|++++.+..+..|..
T Consensus       177 PgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  177 PGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CcCeEEeecCCEEEEecCceeEEEecH
Confidence            345778888888999998888888865

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.68  E-value=0.42  Score=46.03  Aligned_cols=241  Identities=11%  Similarity=0.066  Sum_probs=102.8

Q ss_pred             CcEEEEEe-CCceEEEEEcCCCCCcceeeccccc---CCCCCCCCceeEEEecCCCeEEEEeec--CCCCCeEEEEecCC
Q 009203          236 EQLFVTSA-LDGVIRLWQLQSRGSGASLLSTTDC---LSPKHRRWPEDIAWHPQGNSLFSAHTA--DSGDSQISVLNLNK  309 (540)
Q Consensus       236 ~~~l~tg~-~dg~v~iw~~~~~~~~~~~~~~~~~---~~~~h~~~V~~~~~~~~~~~l~s~~~~--~~~d~~i~vwd~~~  309 (540)
                      .++|+..+ ..+.|.|.|+.+.....++....+.   .....-.....+-.-|+|+.++++...  |..-|-+.+.|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            44555554 7789999999865544443332221   000000112234445789888887322  33445677777775


Q ss_pred             CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec--------------------CCcEEEEecCCCCCccccceee
Q 009203          310 TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS--------------------DHAVVLWSERDAEDSWKPKALH  369 (540)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--------------------dg~i~iwd~~~~~~~~~~~~~~  369 (540)
                      .   ......+........-..+-|.| ..+.++|...                    ..++.+||+.+.+.   .+.+.
T Consensus       167 f---~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~---~Q~id  239 (461)
T PF05694_consen  167 F---EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL---LQTID  239 (461)
T ss_dssp             -----EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE---EEEEE
T ss_pred             c---cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE---eeEEe
Confidence            3   33333333222233456778888 7778887642                    45799999999886   44444


Q ss_pred             cccCCcceeEEEec--cCCCEEEE-EeCCCeEEEEEC-CCCCe----eeeec-----------c-------CccEEEEee
Q 009203          370 RNLHSSAVMGVAGM--QQKQIVLS-AGADKRIIGFDA-GVGRA----DFKHQ-----------I-------ESKCMSVLP  423 (540)
Q Consensus       370 ~~~~~~~v~~l~~s--~~~~~l~~-~~~dg~i~iwd~-~~~~~----~~~~~-----------~-------~~~~~~~~~  423 (540)
                      .......+..+.|.  |+..+=++ +....+|..|-- ..++-    +....           .       ..-+..+..
T Consensus       240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i  319 (461)
T PF05694_consen  240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI  319 (461)
T ss_dssp             S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred             cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence            32222345667774  44444333 333445544433 33321    11110           0       234567777


Q ss_pred             cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc--c--------c--cCccccCeEEEEEcCCCCEEEEE
Q 009203          424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK--Q--------E--SSESQSALINQSWSPDGLYITSG  485 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~--------~--~~~~~~~v~~~~~sp~g~~l~sg  485 (540)
                      +.++.  .+.+++-..|.|+.||+.....+...-...  .        .  -..-.+...-+..|.||+.|...
T Consensus       320 SlDDr--fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  320 SLDDR--FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -TTS---EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             ccCCC--EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            77772  344666778999999999866443321100  0        0  01122345678889999887765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.046  Score=57.49  Aligned_cols=101  Identities=16%  Similarity=0.261  Sum_probs=70.3

Q ss_pred             CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccc
Q 009203          286 GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKP  365 (540)
Q Consensus       286 ~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  365 (540)
                      +..++.|    +..|.+...|+...     +..+....+..++|++++|+. +|.+++.|-.+|.|.+||+..+..   .
T Consensus        99 ~~~ivi~----Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~---l  165 (1206)
T KOG2079|consen   99 VVPIVIG----TSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKI---L  165 (1206)
T ss_pred             eeeEEEE----cCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcc---e
Confidence            4568888    88899999888754     221211223467899999999 999999999999999999999775   3


Q ss_pred             ceeecccCCcc---eeEEEeccCCCEEEEEeCCCeEEEEEC
Q 009203          366 KALHRNLHSSA---VMGVAGMQQKQIVLSAGADKRIIGFDA  403 (540)
Q Consensus       366 ~~~~~~~~~~~---v~~l~~s~~~~~l~~~~~dg~i~iwd~  403 (540)
                      +.+..  |..+   |.-+.+..++..++++...|.  +|.+
T Consensus       166 ~~i~e--~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  166 KVITE--HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeee--cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            44433  3333   333444455667888887776  4544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.59  E-value=0.18  Score=46.10  Aligned_cols=149  Identities=11%  Similarity=0.020  Sum_probs=88.5

Q ss_pred             ceeEEEeccCCCEEEEEe---CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEE-CCCCc
Q 009203          376 AVMGVAGMQQKQIVLSAG---ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD-IRLRQ  451 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d-~~~~~  451 (540)
                      .+.+.+++++|+.++...   ....++++....  .............-.|++++   .+.+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g~~l~~PS~d~~g---~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTGGSLTRPSWDPDG---WVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccCCccccccccCCC---CEEEEEcCCCceEEEEecCCCc
Confidence            688999999999887766   333466655443  22222233466677788875   4555555555666663 33333


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEe---CCCcEEEEeccCCC-C------cccccccccccceeEEEEcC
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGS---ADPVIHLFDIRYSA-N------KPSQSIRAHQKRVFKAVWHY  521 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~---~dg~i~iwd~~~~~-~------~~~~~~~~h~~~i~~l~~s~  521 (540)
                      .......    ...-...|+.+.+||||..+|...   .++.|.+--+.... +      .++.........+.+++|.+
T Consensus       100 ~~~~~v~----~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen  100 GEPVEVD----WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             ceeEEec----ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            2221111    111112899999999999877654   35778777665321 2      11112223345789999999


Q ss_pred             CCCEEEEEEcCC
Q 009203          522 SHPLLISISSDL  533 (540)
Q Consensus       522 ~~~~l~s~~~dg  533 (540)
                      ++.+++.+...+
T Consensus       176 ~~~L~V~~~~~~  187 (253)
T PF10647_consen  176 DSTLVVLGRSAG  187 (253)
T ss_pred             CCEEEEEeCCCC
Confidence            998877765444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.57  E-value=0.48  Score=43.16  Aligned_cols=206  Identities=10%  Similarity=0.117  Sum_probs=113.8

Q ss_pred             eeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCc--cccceeecc-----cCCcceeEEEeccCCC------------EE
Q 009203          329 INSIIFLPWENPCFATGGSDHAVVLWSERDAEDS--WKPKALHRN-----LHSSAVMGVAGMQQKQ------------IV  389 (540)
Q Consensus       329 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~-----~~~~~v~~l~~s~~~~------------~l  389 (540)
                      -+.|+++| .+.+-++...-+...+||.......  .....+...     ......+.+.|+....            .+
T Consensus        25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            67899999 7777788777789999999721100  001122211     1234677888864332            36


Q ss_pred             EEEeCCCeEEEEECCCCCe-----eeeec--cCccEE-EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee-eeccc
Q 009203          390 LSAGADKRIIGFDAGVGRA-----DFKHQ--IESKCM-SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH-AFGWK  460 (540)
Q Consensus       390 ~~~~~dg~i~iwd~~~~~~-----~~~~~--~~~~~~-~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~  460 (540)
                      +.+++||+|.-|...-+..     .....  ....+. .++.........+.++-...++|.+||-.-...... .+. .
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~-D  182 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI-D  182 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc-C
Confidence            7788999999998643322     11111  112221 222222211224556667788999998653321110 000 0


Q ss_pred             cccC-----------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc--ccccceeEEEEcC------
Q 009203          461 QESS-----------ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR--AHQKRVFKAVWHY------  521 (540)
Q Consensus       461 ~~~~-----------~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~i~~l~~s~------  521 (540)
                      ..+.           +..-.|+-..-.+++..=+.|..-|.|-+||+.   +..++++.  +.-...|.|+..|      
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~---G~l~~r~as~g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN---GQLLRRVASSGRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC---CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence            0000           001112222223333333344455789999998   67777663  3344678888866      


Q ss_pred             CCCEEEEEEcCCcEEEEe
Q 009203          522 SHPLLISISSDLNIGLHK  539 (540)
Q Consensus       522 ~~~~l~s~~~dg~v~iw~  539 (540)
                      .|.+|+---.||+|..||
T Consensus       260 sg~lLVGNFGDG~InaFD  277 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYD  277 (336)
T ss_pred             CCCeEEeecCCceeEEec
Confidence            456777777899999987

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.56  E-value=0.59  Score=42.61  Aligned_cols=232  Identities=12%  Similarity=0.136  Sum_probs=125.4

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCC----CCceeEEeecCCC--CcccceeEEEEeCCCCC----------
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKT----KGRACVTFLDDKP--HVKGIINSIIFLPWENP----------  340 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~----------  340 (540)
                      -+.|+|+|.+.+-++.    ...+...+||....    .....+..+...+  ...+..+.+.|+. ...          
T Consensus        25 ~WGia~~p~~~~WVad----ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~   99 (336)
T TIGR03118        25 AWGLSYRPGGPFWVAN----TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITG   99 (336)
T ss_pred             cceeEecCCCCEEEec----CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccc
Confidence            4789999999877777    88899999998711    1112233333211  1234678888875 332          


Q ss_pred             --EEEEEecCCcEEEEecCCCCCc--cccceeecccCCcceeEEEecc--CCCEEEEEe-CCCeEEEEECCCCCeeeeec
Q 009203          341 --CFATGGSDHAVVLWSERDAEDS--WKPKALHRNLHSSAVMGVAGMQ--QKQIVLSAG-ADKRIIGFDAGVGRADFKHQ  413 (540)
Q Consensus       341 --~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~  413 (540)
                        .++.++.||+|.-|...-....  .....+.......-...+++..  .+.+|+.+. ..++|.+||-.-.+......
T Consensus       100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~  179 (336)
T TIGR03118       100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGS  179 (336)
T ss_pred             ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCC
Confidence              3567788999999986433210  0011121111122234555543  345555543 47788888865332211100


Q ss_pred             cCccEEEEeecCC----------------CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203          414 IESKCMSVLPNPC----------------DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP  477 (540)
Q Consensus       414 ~~~~~~~~~~~~~----------------~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  477 (540)
                      .....+-.-+.|.                +.....=+.|..-|.|-+||+...  .+..+    ...+.-...+.|+..|
T Consensus       180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~----as~g~LNaPWG~a~AP  253 (336)
T TIGR03118       180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRV----ASSGRLNAPWGLAIAP  253 (336)
T ss_pred             ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEe----ccCCcccCCceeeeCh
Confidence            0000000011111                111012233444578999998743  22222    1233445677887766


Q ss_pred             ------CCCEEEEEeCCCcEEEEeccCCCCcccccccccc------cceeEEEEcC
Q 009203          478 ------DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ------KRVFKAVWHY  521 (540)
Q Consensus       478 ------~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~------~~i~~l~~s~  521 (540)
                            .|.+|+---.||+|..||..+  +..+..+....      ..++.|.|..
T Consensus       254 a~FG~~sg~lLVGNFGDG~InaFD~~s--G~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       254 ESFGSLSGALLVGNFGDGTINAYDPQS--GAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             hhhCCCCCCeEEeecCCceeEEecCCC--CceeeeecCCCCCeEEecCeEEeeeCC
Confidence                  466777767799999999987  55555554322      2568888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.55  E-value=0.0091  Score=37.80  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=29.3

Q ss_pred             ccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC
Q 009203          326 KGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE  360 (540)
Q Consensus       326 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  360 (540)
                      ...|.+++|+| ..++||.|+.+|.|.+|.+ +++
T Consensus        11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCc
Confidence            35699999999 9999999999999999999 444

>PHA02713 hypothetical protein; Provisional

Probab=96.54  E-value=1  Score=46.65  Aligned_cols=144  Identities=13%  Similarity=0.069  Sum_probs=75.4

Q ss_pred             CCCEEEEEecCC-----cEEEEecCCCCCccccceeecccCC-cceeEEEeccCCCEEEEEeCCC---------------
Q 009203          338 ENPCFATGGSDH-----AVVLWSERDAEDSWKPKALHRNLHS-SAVMGVAGMQQKQIVLSAGADK---------------  396 (540)
Q Consensus       338 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~~dg---------------  396 (540)
                      ++.+.+.||.++     ++..||..+...    ..+...... .....+++  +|...+.|+.++               
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W----~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~  424 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKW----KMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDM  424 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeE----EECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccc
Confidence            677888888764     478899887642    111110011 11112222  577777777542               


Q ss_pred             --------eEEEEECCCCCeeeeecc--C-ccEEEEeecCCCCCceEEEEEcCC------CeEEEEECCC-Ccceeeeec
Q 009203          397 --------RIIGFDAGVGRADFKHQI--E-SKCMSVLPNPCDFNLFMVQTGTPG------RQLRLYDIRL-RQTEIHAFG  458 (540)
Q Consensus       397 --------~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~-~~~~~~~~~  458 (540)
                              .+..||..+++-......  . .....+..+.     .+.+.|+.+      ..+..||..+ .+  ...  
T Consensus       425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~-----~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~--  495 (557)
T PHA02713        425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKD-----DIYVVCDIKDEKNVKTCIFRYNTNTYNG--WEL--  495 (557)
T ss_pred             cccccccceEEEECCCCCeEeecCCCCcccccCcEEEECC-----EEEEEeCCCCCCccceeEEEecCCCCCC--eeE--
Confidence                    477788876543222111  1 1111122221     455556543      2467898886 32  111  


Q ss_pred             cccccCccccCeEEEEEcCCCCEEEEEeCCC--cEEEEeccCC
Q 009203          459 WKQESSESQSALINQSWSPDGLYITSGSADP--VIHLFDIRYS  499 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg--~i~iwd~~~~  499 (540)
                       ...+.........+.+  +|++.++|+.+|  .+..||..+.
T Consensus       496 -~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        496 -ITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             -ccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence             1122222233333444  788999999888  7778888874

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.52  E-value=0.033  Score=53.89  Aligned_cols=139  Identities=14%  Similarity=0.116  Sum_probs=90.4

Q ss_pred             EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCC-------EEEEEeCCCeEEEEECCCCCe--ee-
Q 009203          341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-------IVLSAGADKRIIGFDAGVGRA--DF-  410 (540)
Q Consensus       341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-------~l~~~~~dg~i~iwd~~~~~~--~~-  410 (540)
                      +|.++.....++-.|++.|+.+....     .+. .|+-+.+.|+.+       .-+.|-.|..|+-||++-...  +. 
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk-----~~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWK-----FED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEee-----ccC-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            34555666678888999988532222     132 377777777542       223466678899999984322  11 


Q ss_pred             --e--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203          411 --K--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       411 --~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                        .  +.......|++-..++    ++++|+.+|.|++||-- +....      ..+++-..+|..|..+.+|++|++.+
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG----~IvvgS~~GdIRLYdri-~~~AK------TAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESG----YIVVGSLKGDIRLYDRI-GRRAK------TALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             eeccccccccccceeeecCCc----eEEEeecCCcEEeehhh-hhhhh------hcccccCCceeeEEeeccCcEEEEec
Confidence              1  2223444555556665    89999999999999983 33222      14567778999999999999987664


Q ss_pred             CCCcEEEEecc
Q 009203          487 ADPVIHLFDIR  497 (540)
Q Consensus       487 ~dg~i~iwd~~  497 (540)
                       +..+.+.++.
T Consensus       491 -~tyLlLi~t~  500 (644)
T KOG2395|consen  491 -KTYLLLIDTL  500 (644)
T ss_pred             -ccEEEEEEEe
Confidence             5556666654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.68  Score=41.84  Aligned_cols=278  Identities=8%  Similarity=0.027  Sum_probs=153.1

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      +-+..+.++.   .+...+..+.-++|.|+.+......+ .....   .  +  ..-.|.-.|++..++    ..+.-+.
T Consensus        87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~-~~lnt---~--g--yaygv~vsGn~aYVa----dlddgfL  151 (370)
T COG5276          87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLI-GFLNT---D--G--YAYGVYVSGNYAYVA----DLDDGFL  151 (370)
T ss_pred             hhhheeEecc---cEEEEEcCCCceEEEeccCCCCccee-ccccC---C--c--eEEEEEecCCEEEEe----eccCcEE
Confidence            4566777764   46666677778999999887654332 11110   0  1  223444568888887    7677788


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      +.|+.+.+.....-....   ....-..++.   .|++-..+..|+-+.|-|+.....   +..+........+.++..+
T Consensus       152 ivdvsdpssP~lagrya~---~~~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~s---Pvli~~~n~g~g~~sv~vs  222 (370)
T COG5276         152 IVDVSDPSSPQLAGRYAL---PGGDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHS---PVLIGSYNTGPGTYSVSVS  222 (370)
T ss_pred             EEECCCCCCceeeeeecc---CCCCceeEEE---ecCeEEEEEeCCCeEEEEccCCCC---CeEEEEEecCCceEEEEec
Confidence            999988766555544443   1233356666   467777788899999999998764   3333222233367777777


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEE--eecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          384 QQKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSV--LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      ++..+++..  +--+.+-|..+.+....  ........++  ..-+.    .+......+..+.+-|+.+...+...-  
T Consensus       223 dnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~----~~~Yvadga~gl~~idisnp~spfl~s--  294 (370)
T COG5276         223 DNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSG----EYAYVADGAKGLPIIDISNPPSPFLSS--  294 (370)
T ss_pred             CCeeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceeccc----ceeeeeccccCceeEeccCCCCCchhc--
Confidence            655554443  33577778776553322  2222222222  11122    355556666677777777654332111  


Q ss_pred             ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                        .+......-..+..  -|.++..+..+ ...+-+....  +......+....+.+.+.+-+.+.+.+...++-+.||+
T Consensus       295 --s~~t~g~~a~gi~a--y~~y~yiadkn-~g~vV~~s~~--s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~  367 (370)
T COG5276         295 --SLDTAGYQAAGIRA--YGNYNYIADKN-TGAVVDASPP--SMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE  367 (370)
T ss_pred             --cccCCCccccceEE--ecCeeEeccCC-ceEEEeCCCh--hhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence              00001111222333  34555555444 4445555431  11111122222234444444566888889999999997


Q ss_pred             C
Q 009203          540 I  540 (540)
Q Consensus       540 l  540 (540)
                      +
T Consensus       368 ~  368 (370)
T COG5276         368 Y  368 (370)
T ss_pred             e
Confidence            5

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.41  E-value=0.016  Score=36.64  Aligned_cols=35  Identities=9%  Similarity=0.041  Sum_probs=30.6

Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA  408 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~  408 (540)
                      ....|.+++|+|...+|+.++.+|.|.+|.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            4567999999999999999999999999999 4543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.33  E-value=1.2  Score=43.51  Aligned_cols=153  Identities=8%  Similarity=0.072  Sum_probs=79.4

Q ss_pred             CceEEEEEecCCCcEEEEEe-----------CCc-eEEEEEcCCCC-CcceeecccccCCCCCCCCceeEEEecCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSA-----------LDG-VIRLWQLQSRG-SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLF  290 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~-----------~dg-~v~iw~~~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  290 (540)
                      .....|+|.++ |+++++-.           ..+ .|.+++-.++. .........     ........++|.++| +++
T Consensus        14 ~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-----~~l~~p~Gi~~~~~G-lyV   86 (367)
T TIGR02604        14 RNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-----EELSMVTGLAVAVGG-VYV   86 (367)
T ss_pred             CCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-----cCCCCccceeEecCC-EEE
Confidence            45678899985 88776642           123 67666543322 111111100     112345789999988 444


Q ss_pred             EEeecCCCCCeEEEEecCCC-----CCceeEEeecCC-CCcccceeEEEEeCCCCCEEEEEecC----------------
Q 009203          291 SAHTADSGDSQISVLNLNKT-----KGRACVTFLDDK-PHVKGIINSIIFLPWENPCFATGGSD----------------  348 (540)
Q Consensus       291 s~~~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~d----------------  348 (540)
                      +     ......++.|.+..     +....+..+... .++......++|.| ++.+.++-+..                
T Consensus        87 ~-----~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR02604        87 A-----TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQ  160 (367)
T ss_pred             e-----CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCccc
Confidence            4     44443334455421     111122223221 11123477899999 88776655421                


Q ss_pred             ---CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC
Q 009203          349 ---HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD  395 (540)
Q Consensus       349 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d  395 (540)
                         |.|.-++..++.    ...+. .+ ......++|+++|+++++-..+
T Consensus       161 ~~~g~i~r~~pdg~~----~e~~a-~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       161 GLGGGLFRYNPDGGK----LRVVA-HG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ccCceEEEEecCCCe----EEEEe-cC-cCCCccceECCCCCEEEEccCC
Confidence               345555555543    12221 22 2345789999999887765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.99  E-value=0.24  Score=50.64  Aligned_cols=114  Identities=14%  Similarity=0.225  Sum_probs=70.8

Q ss_pred             eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe--CCCCCEEEEEecCCcEEEEec
Q 009203          279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL--PWENPCFATGGSDHAVVLWSE  356 (540)
Q Consensus       279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~s~~~dg~i~iwd~  356 (540)
                      -+.-+.-++.-++-    +....+.|||...+. .+....+    ...+.|.++.|.  | +++.+++.|..+.|.+|.-
T Consensus        34 li~gss~~k~a~V~----~~~~~LtIWD~~~~~-lE~~~~f----~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   34 LISGSSIKKIAVVD----SSRSELTIWDTRSGV-LEYEESF----SEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             eEeecccCcEEEEE----CCCCEEEEEEcCCcE-EEEeeee----cCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEc
Confidence            34444445544444    677789999999762 1111222    135679999986  5 7788888888899988754


Q ss_pred             C-----CCCCccc-cceeecccCC-cceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203          357 R-----DAEDSWK-PKALHRNLHS-SAVMGVAGMQQKQIVLSAGADKRIIGFDAG  404 (540)
Q Consensus       357 ~-----~~~~~~~-~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~  404 (540)
                      .     .....|. +..+....++ .+|.+..|.++|.+++.++  ..+.++|-.
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence            2     2222221 1222223344 6799999999888776554  378888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.97  E-value=0.16  Score=50.17  Aligned_cols=156  Identities=14%  Similarity=0.066  Sum_probs=88.8

Q ss_pred             ceeEEEeccCCCEEEEEe---CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce-EEEEEcCCCeEEEEECCCCc
Q 009203          376 AVMGVAGMQQKQIVLSAG---ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF-MVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~v~i~d~~~~~  451 (540)
                      ++..++|. ||+.++...   .+|.+++=|..      ....-.++..+.|.|.+.... .+++-.....|.+|.+....
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~------viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK------VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCccccCCcc------EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            58889998 566555432   12333222211      122224677888888643322 44555567899999987322


Q ss_pred             ceeeeecccc--ccC-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEE
Q 009203          452 TEIHAFGWKQ--ESS-ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLIS  528 (540)
Q Consensus       452 ~~~~~~~~~~--~~~-~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s  528 (540)
                      .....+-..+  ++. ...--..++.|+|....|++-.....-.++++.....+....++ ..+-|.|.+|.+||+.|+.
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEE
Confidence            1111100000  000 00111245789999999887766665567777754334444444 4567999999999987765


Q ss_pred             E-EcCCcEEEEe
Q 009203          529 I-SSDLNIGLHK  539 (540)
Q Consensus       529 ~-~~dg~v~iw~  539 (540)
                      + |..=.-+|||
T Consensus       173 AvGSsLHSyiWd  184 (671)
T PF15390_consen  173 AVGSSLHSYIWD  184 (671)
T ss_pred             EeCCeEEEEEec
Confidence            5 4444567886

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.85  E-value=0.026  Score=48.66  Aligned_cols=141  Identities=12%  Similarity=0.085  Sum_probs=76.4

Q ss_pred             EEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee--eeccCccEE
Q 009203          342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF--KHQIESKCM  419 (540)
Q Consensus       342 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~  419 (540)
                      +..-+.||.|+-++++..+...+...+    +.....-+.   -+..+++|+.+|.|++|....-....  .......+.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~----~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~  105 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERF----IDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID  105 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhh----hhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccce
Confidence            334466788888877764421111111    222211112   34678999999999999886211111  111112222


Q ss_pred             EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc-cCeEEEEEcCCCCEEEEE--eCCCcEEEEec
Q 009203          420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ-SALINQSWSPDGLYITSG--SADPVIHLFDI  496 (540)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~sg--~~dg~i~iwd~  496 (540)
                      +......  ...+..+++.+|.|+.|++.-.+..-.       ...|. .++.....+..+++|+..  |.|..++.|++
T Consensus       106 ~~Ip~~~--~~~~~c~~~~dg~ir~~n~~p~k~~g~-------~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  106 LGIPNGR--DSSLGCVGAQDGRIRACNIKPNKVLGY-------VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             ecccccc--ccceeEEeccCCceeeeccccCceeee-------eccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence            2222222  225888999999999999975543221       12333 344444445555666666  66667777776


Q ss_pred             cC
Q 009203          497 RY  498 (540)
Q Consensus       497 ~~  498 (540)
                      ..
T Consensus       177 e~  178 (238)
T KOG2444|consen  177 EK  178 (238)
T ss_pred             hh
Confidence            64

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.84  E-value=1.4  Score=40.04  Aligned_cols=202  Identities=12%  Similarity=0.065  Sum_probs=116.3

Q ss_pred             CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203          272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV  351 (540)
Q Consensus       272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  351 (540)
                      |-...|.++.|+|+.+.|++.    .....-.||=-..|   ..+..+.-...  ...-.|.+.. ++.+.++--.++.+
T Consensus        83 g~~~nvS~LTynp~~rtLFav----~n~p~~iVElt~~G---dlirtiPL~g~--~DpE~Ieyig-~n~fvi~dER~~~l  152 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAV----TNKPAAIVELTKEG---DLIRTIPLTGF--SDPETIEYIG-GNQFVIVDERDRAL  152 (316)
T ss_pred             cccccccceeeCCCcceEEEe----cCCCceEEEEecCC---ceEEEeccccc--CChhHeEEec-CCEEEEEehhcceE
Confidence            445559999999999999887    56665555533334   44555443222  2245677876 77777777778888


Q ss_pred             EEEecCCCCCccccce--ee--cccC-CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-eeeecc----------C
Q 009203          352 VLWSERDAEDSWKPKA--LH--RNLH-SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DFKHQI----------E  415 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~--~~--~~~~-~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~----------~  415 (540)
                      .++.+...........  +.  ...+ +.....++|.|....|+.+-.-.-+.||....+.. +..+..          -
T Consensus       153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~  232 (316)
T COG3204         153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV  232 (316)
T ss_pred             EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence            8887766532211111  11  1122 56678999999999998888877777777664331 111111          1


Q ss_pred             ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee-ccccccCccccCeEEEEEcCCCCEEEEE
Q 009203          416 SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF-GWKQESSESQSALINQSWSPDGLYITSG  485 (540)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~sg  485 (540)
                      ..+.++.+++...  .+++-+..++.+.-.|....-.....+ +-...+...-...-.++..++|.+.+++
T Consensus       233 ~DvSgl~~~~~~~--~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         233 LDVSGLEFNAITN--SLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             eccccceecCCCC--cEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence            2334556665432  477777777777777776443111111 0000111111234567777766554443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.84  E-value=3.1  Score=44.14  Aligned_cols=260  Identities=9%  Similarity=0.004  Sum_probs=130.4

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC----CCeEEEEeec
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ----GNSLFSAHTA  295 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~s~~~~  295 (540)
                      -|-..-..|+.+-++  .+|++|+.-|.=++-.+.+...........+.  -..-++|.+++.-..    ...|++++- 
T Consensus       303 lge~siassi~~L~n--g~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet--~~NLgPI~Dm~Vvd~d~q~q~qivtCsG-  377 (1096)
T KOG1897|consen  303 LGETSIASSINYLDN--GVLFVGSRFGDSQLIKLNTEPDVGSYVVILET--FVNLGPIVDMCVVDLDRQGQGQIVTCSG-  377 (1096)
T ss_pred             cCCcchhhhhhcccC--ceEEEeccCCceeeEEccccCCCCchhhhhhh--cccccceeeEEEEeccccCCceEEEEeC-
Confidence            455556677777763  47888888887777777655433222111111  133467888877542    236666632 


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEE--EeCCCCCEEEEEecC-------------------------
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSII--FLPWENPCFATGGSD-------------------------  348 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~p~~~~~l~s~~~d-------------------------  348 (540)
                      ...||++++..-.-+-.......+.+   . ..++.+.  +.+.-.++|+.+-.+                         
T Consensus       378 a~kdgSLRiiRngi~I~e~A~i~l~G---i-kg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~T  453 (1096)
T KOG1897|consen  378 AFKDGSLRIIRNGIGIDELASIDLPG---I-KGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQT  453 (1096)
T ss_pred             CCCCCcEEEEecccccceeeEeecCC---c-cceeEeeccccccCCcEEEEEeccceEEEEEccceEEeccccccccCce
Confidence            25789999886543311111111221   1 1134443  222111222222111                         


Q ss_pred             ----------------CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--ee
Q 009203          349 ----------------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--DF  410 (540)
Q Consensus       349 ----------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~  410 (540)
                                      ..|++++-......|.        ....++....+.+...++.++.++.+...++..+..  ..
T Consensus       454 if~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~--------~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~  525 (1096)
T KOG1897|consen  454 IFCSTINGNQLVQVTSNSIRLVSSAGLRSEWR--------PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVS  525 (1096)
T ss_pred             EEEEccCCceEEEEecccEEEEcchhhhhccc--------CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeee
Confidence                            1233333321110000        122333333444555677777777777777766553  22


Q ss_pred             eeccCccEEEEeecCCCCCc---eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC
Q 009203          411 KHQIESKCMSVLPNPCDFNL---FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA  487 (540)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~  487 (540)
                      .......+.|+.++|.+...   .+++.|..+..+.+.-...........  ......-...|.-..|--|..+|.++..
T Consensus       526 ~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~--~l~~~~iPRSIl~~~~e~d~~yLlvalg  603 (1096)
T KOG1897|consen  526 HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE--QLSGEIIPRSILLTTFEGDIHYLLVALG  603 (1096)
T ss_pred             eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee--ccCCCccchheeeEEeeccceEEEEEcC
Confidence            34445666677666653332   378888877665544332211111110  0011112234555566667889999999


Q ss_pred             CCcEEEEeccC
Q 009203          488 DPVIHLFDIRY  498 (540)
Q Consensus       488 dg~i~iwd~~~  498 (540)
                      ||.+.-|.++.
T Consensus       604 dG~l~~fv~d~  614 (1096)
T KOG1897|consen  604 DGALLYFVLDI  614 (1096)
T ss_pred             CceEEEEEEEc
Confidence            99998777765

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.79  E-value=0.15  Score=54.26  Aligned_cols=143  Identities=12%  Similarity=0.141  Sum_probs=91.8

Q ss_pred             cceeEEEeccCCCEEEEE--eCCCeEEEEECCCCCe--------ee----eeccCccEEEEeecCCCCCceEEEEEcCCC
Q 009203          375 SAVMGVAGMQQKQIVLSA--GADKRIIGFDAGVGRA--------DF----KHQIESKCMSVLPNPCDFNLFMVQTGTPGR  440 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~--~~dg~i~iwd~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  440 (540)
                      ..+..+...+|+...++.  +.+-.|..||++.-..        +.    .........++.|+|.-+  ...+++..|+
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--~n~av~l~dl  178 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--LNSAVDLSDL  178 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--chhhhhcccc
Confidence            345566666776655443  3344799999975322        11    122234556777887543  3567778889


Q ss_pred             eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---cc-ccceeE
Q 009203          441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AH-QKRVFK  516 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h-~~~i~~  516 (540)
                      .|++..+.........+       ......++++|+|.|+.++.|-..|++.-|...-   +....+.   .. ...|.+
T Consensus       179 sl~V~~~~~~~~~v~s~-------p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l---eik~~ip~Pp~~e~yrvl~  248 (1405)
T KOG3630|consen  179 SLRVKSTKQLAQNVTSF-------PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL---EIKSEIPEPPVEENYRVLS  248 (1405)
T ss_pred             chhhhhhhhhhhhhccc-------CcccceeeEEeccccceeeEecCCCeEEEeeccc---ceeecccCCCcCCCcceeE
Confidence            98888776433222211       2345789999999999999999999999887763   2222222   11 467999


Q ss_pred             EEEcCCCCEEEEE
Q 009203          517 AVWHYSHPLLISI  529 (540)
Q Consensus       517 l~~s~~~~~l~s~  529 (540)
                      |+|-..-.+||+-
T Consensus       249 v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  249 VTWLSTQEFLVVY  261 (1405)
T ss_pred             EEEecceeEEEEe
Confidence            9997766666543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.61  E-value=2.5  Score=41.25  Aligned_cols=151  Identities=7%  Similarity=0.085  Sum_probs=77.1

Q ss_pred             ceeEEEecCCCeEEEEeec-----C--CCCC-eEEEEecCCCCCc-eeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203          277 PEDIAWHPQGNSLFSAHTA-----D--SGDS-QISVLNLNKTKGR-ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS  347 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~-----~--~~d~-~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  347 (540)
                      ...|+|.++|+++++-...     +  ...+ .|.+++-..+... .....+..   .-.....+++.+ ++ ++++ ..
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---~l~~p~Gi~~~~-~G-lyV~-~~   89 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---ELSMVTGLAVAV-GG-VYVA-TP   89 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---CCCCccceeEec-CC-EEEe-CC
Confidence            5679999999987774100     0  0122 7777765433222 12223322   123468899988 77 5554 44


Q ss_pred             CCcEEEEecCCCCCcc-ccceeec-c-c----CCcceeEEEeccCCCEEEEEeCC-------------------CeEEEE
Q 009203          348 DHAVVLWSERDAEDSW-KPKALHR-N-L----HSSAVMGVAGMQQKQIVLSAGAD-------------------KRIIGF  401 (540)
Q Consensus       348 dg~i~iwd~~~~~~~~-~~~~~~~-~-~----~~~~v~~l~~s~~~~~l~~~~~d-------------------g~i~iw  401 (540)
                      ....++.|........ ....+.. . .    +......++|.|||.+.++.+..                   |.|..+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            3333344554321110 1111211 1 1    23447789999999877765521                   456666


Q ss_pred             ECCCCCeeeeeccCccEEEEeecCCCCCceEEEEE
Q 009203          402 DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTG  436 (540)
Q Consensus       402 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  436 (540)
                      |...++.............++|++.+   .++++-
T Consensus       170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G---~l~~td  201 (367)
T TIGR02604       170 NPDGGKLRVVAHGFQNPYGHSVDSWG---DVFFCD  201 (367)
T ss_pred             ecCCCeEEEEecCcCCCccceECCCC---CEEEEc
Confidence            66654432222222334577888765   455443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.41  E-value=4.6  Score=43.18  Aligned_cols=122  Identities=7%  Similarity=0.039  Sum_probs=63.3

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCC-CCCCCCceeEEEec----------------CCCeEEEEeecCCCCC
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS-PKHRRWPEDIAWHP----------------QGNSLFSAHTADSGDS  300 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~~----------------~~~~l~s~~~~~~~d~  300 (540)
                      .|..++.++.|.-.|..+++.+.++........ ..| .....+++..                ++..|+.+    +.|+
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~----T~Dg  270 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP----TSDA  270 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEe----cCCC
Confidence            455556677777777777776666543321100 001 0012233321                23467777    8899


Q ss_pred             eEEEEecCCCCCceeEEeecCC---------CCcccceeEEEEeCC-CCCEEEEEec----------CCcEEEEecCCCC
Q 009203          301 QISVLNLNKTKGRACVTFLDDK---------PHVKGIINSIIFLPW-ENPCFATGGS----------DHAVVLWSERDAE  360 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~p~-~~~~l~s~~~----------dg~i~iwd~~~~~  360 (540)
                      .|.-.|..+++.   +-.+...         ......-..+.-.|. .+..++.|+.          +|.|+-+|..+++
T Consensus       271 ~LiALDA~TGk~---~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       271 RLIALDADTGKL---CEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             eEEEEECCCCCE---EEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            999999998832   2222110         000000000111110 1345556642          6889999999999


Q ss_pred             Cccccce
Q 009203          361 DSWKPKA  367 (540)
Q Consensus       361 ~~~~~~~  367 (540)
                      ..|....
T Consensus       348 l~W~~~~  354 (764)
T TIGR03074       348 LVWAWDP  354 (764)
T ss_pred             EeeEEec
Confidence            8776653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.27  E-value=0.073  Score=32.59  Aligned_cols=32  Identities=16%  Similarity=0.274  Sum_probs=27.8

Q ss_pred             CceEEEEEecCCC--cEEEEEeCCceEEEEEcCC
Q 009203          224 RKLRSLSLNPVNE--QLFVTSALDGVIRLWQLQS  255 (540)
Q Consensus       224 ~~V~~l~~spd~~--~~l~tg~~dg~v~iw~~~~  255 (540)
                      +.|.++.|+|.++  .+|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998656  6999999999999999985

It contains a characteristic DLL sequence motif.

>PHA03098 kelch-like protein; Provisional

Probab=95.26  E-value=0.83  Score=47.23  Aligned_cols=183  Identities=9%  Similarity=0.074  Sum_probs=84.9

Q ss_pred             CCCEEEEEecCC------cEEEEecCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCC-----CeEEEEECCC
Q 009203          338 ENPCFATGGSDH------AVVLWSERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGAD-----KRIIGFDAGV  405 (540)
Q Consensus       338 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~  405 (540)
                      ++.+++.|+.++      .+..||..+...    ..+.... .......+.+  ++..++.|+.+     ..+..||..+
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW----NKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCee----eECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCC
Confidence            556666666532      467788776653    1111100 1111122222  56777777765     3477888876


Q ss_pred             CCeeeeecc--CccEEEEeecCCCCCceEEEEEcCC------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC
Q 009203          406 GRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPG------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP  477 (540)
Q Consensus       406 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  477 (540)
                      ++-......  .....+.+... +   .+.+.|+.+      ..+..||..+..=  ...   ............+..  
T Consensus       368 ~~W~~~~~lp~~r~~~~~~~~~-~---~iYv~GG~~~~~~~~~~v~~yd~~t~~W--~~~---~~~p~~r~~~~~~~~--  436 (534)
T PHA03098        368 SKWREEPPLIFPRYNPCVVNVN-N---LIYVIGGISKNDELLKTVECFSLNTNKW--SKG---SPLPISHYGGCAIYH--  436 (534)
T ss_pred             CceeeCCCcCcCCccceEEEEC-C---EEEEECCcCCCCcccceEEEEeCCCCee--eec---CCCCccccCceEEEE--
Confidence            553222111  11111122111 2   455556532      4588899875431  110   011111111122222  


Q ss_pred             CCCEEEEEeCCC--------cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC-----CcEEEEe
Q 009203          478 DGLYITSGSADP--------VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD-----LNIGLHK  539 (540)
Q Consensus       478 ~g~~l~sg~~dg--------~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-----g~v~iw~  539 (540)
                      ++.+++.|+.++        .+.+||..+.....+..+.........+.+  ++++++.||.+     ..|.+||
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd  509 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYD  509 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEe
Confidence            566777776432        388888886433333333211111122222  67777777754     3566665

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.10  E-value=0.72  Score=47.78  Aligned_cols=110  Identities=8%  Similarity=0.016  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCeEEEEECCCCcce-----------eeeecccc-ccCccccCeEEEEEc--CCCCEEEEEeCCCcEEEEec
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTE-----------IHAFGWKQ-ESSESQSALINQSWS--PDGLYITSGSADPVIHLFDI  496 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~-----------~~~~~~~~-~~~~~~~~v~~~~~s--p~g~~l~sg~~dg~i~iwd~  496 (540)
                      .+|+.+..||.|.+|.+.+--..           ........ -...-...+++++++  ...++||+++....|.||-+
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf  194 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF  194 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence            58899999999999977421000           00000000 001123478999998  78889999999999999877


Q ss_pred             cCCCCc-ccccccccccceeEEEEcCCC-----C-EEEEEEcCCcEEEEeC
Q 009203          497 RYSANK-PSQSIRAHQKRVFKAVWHYSH-----P-LLISISSDLNIGLHKI  540 (540)
Q Consensus       497 ~~~~~~-~~~~~~~h~~~i~~l~~s~~~-----~-~l~s~~~dg~v~iw~l  540 (540)
                      .....+ ....-..|...|.+|.|-++.     . .|++++-.|.+.+|++
T Consensus       195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            652111 111112356679999997643     2 7888999999999875

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.09  E-value=4.7  Score=43.16  Aligned_cols=115  Identities=14%  Similarity=0.151  Sum_probs=66.6

Q ss_pred             CEEEEEecCCcEEEEecCCCCCccccceeecccC---CcceeEEEec----------------cCCCEEEEEeCCCeEEE
Q 009203          340 PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH---SSAVMGVAGM----------------QQKQIVLSAGADKRIIG  400 (540)
Q Consensus       340 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~l~~s----------------~~~~~l~~~~~dg~i~i  400 (540)
                      ..++.++.++.|.-.|..+++.+|+...-.....   ...+..+.+.                .++..++.++.|+.+.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            4566666677788888888877665433211000   0012223331                13457888999999999


Q ss_pred             EECCCCCeeeeeccCccEE-------------EEeecCCCCCceEEEEEcC----------CCeEEEEECCCCcceee
Q 009203          401 FDAGVGRADFKHQIESKCM-------------SVLPNPCDFNLFMVQTGTP----------GRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       401 wd~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~  455 (540)
                      .|.++|+....+...+.+.             .....|-=.. ..+++|+.          +|.|+-||..+++..-.
T Consensus       275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            9999999886654433221             1111121001 24555532          68899999999886544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK10115 protease 2; Provisional

Probab=94.96  E-value=6.1  Score=42.07  Aligned_cols=115  Identities=14%  Similarity=0.099  Sum_probs=65.1

Q ss_pred             ceeEEEecCCCeEEEEeec-CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC------C
Q 009203          277 PEDIAWHPQGNSLFSAHTA-DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD------H  349 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g  349 (540)
                      +..+.|+|||++|+.+... |+....|++.|+.++.  .....+..      .-..++|.+ +++.|+....+      .
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~--~l~~~i~~------~~~~~~w~~-D~~~~~y~~~~~~~~~~~  199 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN--WYPELLDN------VEPSFVWAN-DSWTFYYVRKHPVTLLPY  199 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC--CCCccccC------cceEEEEee-CCCEEEEEEecCCCCCCC
Confidence            4568899999988887433 3344568888998762  11122221      114699999 77666555432      3


Q ss_pred             cEEEEecCCCCCccccceeecccCCccee-EEEeccCCCEEEEEeC---CCeEEEEEC
Q 009203          350 AVVLWSERDAEDSWKPKALHRNLHSSAVM-GVAGMQQKQIVLSAGA---DKRIIGFDA  403 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~l~~s~~~~~l~~~~~---dg~i~iwd~  403 (540)
                      .|+.+++.++...  -..+.. ....... .+..+.++++++..+.   ++.+.+++.
T Consensus       200 ~v~~h~lgt~~~~--d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        200 QVWRHTIGTPASQ--DELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEEEEECCCChhH--CeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            5777888877310  112221 1112222 3333447777665444   346888885

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.93  E-value=2.4  Score=37.15  Aligned_cols=145  Identities=11%  Similarity=0.058  Sum_probs=85.4

Q ss_pred             CCceeEEEecCCCeEEEEeecCC------CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCE-EEEEec
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADS------GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC-FATGGS  347 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~  347 (540)
                      ...+.-..+|+|++++ |..+..      ..|.++.|-....     +..+..   .-+.-+.++|+. +... .++-+.
T Consensus       109 nR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~-----v~~i~~---~v~IsNgl~Wd~-d~K~fY~iDsl  178 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQ-----VELIWN---CVGISNGLAWDS-DAKKFYYIDSL  178 (310)
T ss_pred             cccccCccCCCCceee-eeeccccccccccccEEEEeccCCC-----ceeeeh---hccCCccccccc-cCcEEEEEccC
Confidence            4456667789999844 322111      2355666655421     111111   123456789987 5444 456677


Q ss_pred             CCcEEEEe--cCCCCCccccceeeccc----CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEE
Q 009203          348 DHAVVLWS--ERDAEDSWKPKALHRNL----HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMS  420 (540)
Q Consensus       348 dg~i~iwd--~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~  420 (540)
                      +-.|.-||  ..++....+...+....    ..-..-.++...+|++.+++-..++|..+|..+|+.+...... ..+.+
T Consensus       179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits  258 (310)
T KOG4499|consen  179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS  258 (310)
T ss_pred             ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence            77887777  56665422222221111    1112234455667899998889999999999999998876654 56777


Q ss_pred             EeecCCCCC
Q 009203          421 VLPNPCDFN  429 (540)
Q Consensus       421 ~~~~~~~~~  429 (540)
                      ++|...+.+
T Consensus       259 ccFgGkn~d  267 (310)
T KOG4499|consen  259 CCFGGKNLD  267 (310)
T ss_pred             EEecCCCcc
Confidence            888765433

>PHA03098 kelch-like protein; Provisional

Probab=94.91  E-value=2.9  Score=43.27  Aligned_cols=154  Identities=10%  Similarity=0.061  Sum_probs=73.3

Q ss_pred             CCCEEEEEecC-----CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC------CeEEEEECCCC
Q 009203          338 ENPCFATGGSD-----HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD------KRIIGFDAGVG  406 (540)
Q Consensus       338 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~  406 (540)
                      ++.+++.||.+     ..+..||..+.+.  .  ......+...-.+++. -++..++.|+.+      ..+..||+.++
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~--~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKW--R--EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCce--e--eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence            66788888865     3477888877652  1  1110001111112222 256777777632      35888998865


Q ss_pred             CeeeeeccC--ccEEEEeecCCCCCceEEEEEcCC--------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          407 RADFKHQIE--SKCMSVLPNPCDFNLFMVQTGTPG--------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       407 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      +-.......  ....+..... +   .+++.|+.+        ..+.+||..+.+=.  ...   ...........+.+ 
T Consensus       417 ~W~~~~~~p~~r~~~~~~~~~-~---~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~--~~~---~~~~~r~~~~~~~~-  486 (534)
T PHA03098        417 KWSKGSPLPISHYGGCAIYHD-G---KIYVIGGISYIDNIKVYNIVESYNPVTNKWT--ELS---SLNFPRINASLCIF-  486 (534)
T ss_pred             eeeecCCCCccccCceEEEEC-C---EEEEECCccCCCCCcccceEEEecCCCCcee--eCC---CCCcccccceEEEE-
Confidence            432221111  1111122211 1   355555432        23888888765411  110   01111111222333 


Q ss_pred             CCCCEEEEEeCC-----CcEEEEeccCCCCcccccc
Q 009203          477 PDGLYITSGSAD-----PVIHLFDIRYSANKPSQSI  507 (540)
Q Consensus       477 p~g~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~  507 (540)
                       ++.+++.|+.+     +.+.+||..+.....+..+
T Consensus       487 -~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  521 (534)
T PHA03098        487 -NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKF  521 (534)
T ss_pred             -CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCC
Confidence             67777777754     4688888886433333333

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.76  E-value=0.022  Score=58.51  Aligned_cols=70  Identities=26%  Similarity=0.343  Sum_probs=52.4

Q ss_pred             cCeEEEEEcC---CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEE-----------EcCCCCEEEEEEcCC
Q 009203          468 SALINQSWSP---DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAV-----------WHYSHPLLISISSDL  533 (540)
Q Consensus       468 ~~v~~~~~sp---~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~-----------~s~~~~~l~s~~~dg  533 (540)
                      ..+.-|.|.|   +.-++..+-.++.|++.+.+.   .....+.+|..++.+++           .+|||..|+.++.||
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~r---a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG  257 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINR---ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG  257 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeech---HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence            3445556655   567888888899999888874   23355556877666654           589999999999999


Q ss_pred             cEEEEeC
Q 009203          534 NIGLHKI  540 (540)
Q Consensus       534 ~v~iw~l  540 (540)
                      .+++|.+
T Consensus       258 ~v~f~Qi  264 (1283)
T KOG1916|consen  258 SVGFYQI  264 (1283)
T ss_pred             ccceeee
Confidence            9999964

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.70  E-value=3.3  Score=37.81  Aligned_cols=153  Identities=8%  Similarity=0.061  Sum_probs=90.9

Q ss_pred             ceeEEEEeCCCCCEEEEEe---cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEE-C
Q 009203          328 IINSIIFLPWENPCFATGG---SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFD-A  403 (540)
Q Consensus       328 ~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd-~  403 (540)
                      .+.+.++++ ++..++...   ....++++......     ....   ....+..-.|++++...+....+...+++. .
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~-----~~~~---~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~   95 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPV-----RPVL---TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDS   95 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcc-----eeec---cCCccccccccCCCCEEEEEcCCCceEEEEec
Confidence            588999999 777766554   33445555544332     1211   223678889999988877777677777774 3


Q ss_pred             CCCCe--eee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce--eeeeccccccCccccCeEEEEEcC
Q 009203          404 GVGRA--DFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE--IHAFGWKQESSESQSALINQSWSP  477 (540)
Q Consensus       404 ~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp  477 (540)
                      ..+..  ...  ......+.++.++|++...-+++....++.|.+--+.....-  ................++.++|.+
T Consensus        96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen   96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            33332  222  111227899999999965444444455678887765422211  111111112223356789999999


Q ss_pred             CCCEEEEEeCCC
Q 009203          478 DGLYITSGSADP  489 (540)
Q Consensus       478 ~g~~l~sg~~dg  489 (540)
                      ++.+++.+...+
T Consensus       176 ~~~L~V~~~~~~  187 (253)
T PF10647_consen  176 DSTLVVLGRSAG  187 (253)
T ss_pred             CCEEEEEeCCCC
Confidence            998877765544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.65  E-value=4.5  Score=41.72  Aligned_cols=201  Identities=11%  Similarity=0.048  Sum_probs=94.9

Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      -.|+||+.. |   ..+..+--  . .+.+-.+.|+.  ...|++-..+|++++|++-.......  .+........|..
T Consensus        64 ~~I~If~~s-G---~lL~~~~w--~-~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~--svg~e~~~~~I~e  132 (829)
T KOG2280|consen   64 PYIRIFNIS-G---QLLGRILW--K-HGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESN--SVGFESQMSDIVE  132 (829)
T ss_pred             eeEEEEecc-c---cchHHHHh--c-CCCeeeecccC--CceEEEEeccceEEEeecchhhhccc--ccccccccCceeE
Confidence            447777776 3   22222111  1 23688999985  45566678899999999976442110  0111223334555


Q ss_pred             EEeccCCCEEEEEeCCCeEEEE-ECCCCCeeee---eccCccEEEEeecCCCCCceEEE-EEcCCCeEEEEECCCCccee
Q 009203          380 VAGMQQKQIVLSAGADKRIIGF-DAGVGRADFK---HQIESKCMSVLPNPCDFNLFMVQ-TGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iw-d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~v~i~d~~~~~~~~  454 (540)
                      +.|..+|-.+++  .+|.+.+- +.........   ........++...+.+.....++ ..-..+ ..++-........
T Consensus       133 c~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~  209 (829)
T KOG2280|consen  133 CRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL  209 (829)
T ss_pred             EEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc
Confidence            555545544333  34444443 3322111100   01111112332222221111111 110000 0111111111111


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc--ccccceeEEEEcCCC
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR--AHQKRVFKAVWHYSH  523 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~i~~l~~s~~~  523 (540)
                      ..      +..-.+.+..+..||++++|+.-..+|.|.+-+++.  .+.+..+.  .|. +.-.++|.-+.
T Consensus       210 ~~------~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~--~~~lce~~~~~~~-~p~qm~Wcgnd  271 (829)
T KOG2280|consen  210 HA------LSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDL--SQILCEFNCTDHD-PPKQMAWCGND  271 (829)
T ss_pred             cc------cCCCCceEEEEEEcCCcceEEEEecCCcEEEEecch--hhhhhccCCCCCC-chHhceeecCC
Confidence            11      111134678899999999999999999999998886  34444443  232 22356665443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.55  E-value=3.5  Score=37.33  Aligned_cols=188  Identities=8%  Similarity=-0.008  Sum_probs=102.9

Q ss_pred             cceeEEEEeCCCCCEEEEEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203          327 GIINSIIFLPWENPCFATGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG  404 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~  404 (540)
                      ....++.|.. ++.++-+.+.-|  .|+.+|+.+++..   ..... ...---..++.. ++......=.++...+||..
T Consensus        45 aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~---~~~~l-~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   45 AFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVL---QSVPL-PPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             -EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEE---EEEE--TTT--EEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred             ccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEE---EEEEC-CccccceeEEEE-CCEEEEEEecCCeEEEEccc
Confidence            4466788865 777877777666  6999999998742   11111 111122334443 23444455568899999999


Q ss_pred             CCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203          405 VGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS  484 (540)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  484 (540)
                      +.+.+..+........++.+..     .|+.......++++|..+.+.... +... ....--..++-+.|- +|...|=
T Consensus       119 tl~~~~~~~y~~EGWGLt~dg~-----~Li~SDGS~~L~~~dP~~f~~~~~-i~V~-~~g~pv~~LNELE~i-~G~IyAN  190 (264)
T PF05096_consen  119 TLKKIGTFPYPGEGWGLTSDGK-----RLIMSDGSSRLYFLDPETFKEVRT-IQVT-DNGRPVSNLNELEYI-NGKIYAN  190 (264)
T ss_dssp             TTEEEEEEE-SSS--EEEECSS-----CEEEE-SSSEEEEE-TTT-SEEEE-EE-E-ETTEE---EEEEEEE-TTEEEEE
T ss_pred             cceEEEEEecCCcceEEEcCCC-----EEEEECCccceEEECCcccceEEE-EEEE-ECCEECCCcEeEEEE-cCEEEEE
Confidence            9888777766666666664432     455555567899999887654322 1111 000111234445554 5655555


Q ss_pred             EeCCCcEEEEeccCCCCccccccc---------------ccccceeEEEEcCCCCEEEEEE
Q 009203          485 GSADPVIHLFDIRYSANKPSQSIR---------------AHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       485 g~~dg~i~iwd~~~~~~~~~~~~~---------------~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      .-....|...|..+  +..+..+.               ...+-.+.|||.|..+.|...|
T Consensus       191 VW~td~I~~Idp~t--G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  191 VWQTDRIVRIDPET--GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ETTSSEEEEEETTT---BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEeCCC--CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            55555666666666  44333221               1134679999998876555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.53  E-value=4.1  Score=38.08  Aligned_cols=282  Identities=11%  Similarity=0.103  Sum_probs=127.3

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ...+.+|.|.. ..+-+++|. .+.  |+...++....+.......  ..-.-...++.|..+ ..++++     ..+ +
T Consensus        16 ~~~l~dV~F~d-~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~--~~~~~~l~~I~f~~~-~g~ivG-----~~g-~   82 (302)
T PF14870_consen   16 DKPLLDVAFVD-PNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLD--NPFDYHLNSISFDGN-EGWIVG-----EPG-L   82 (302)
T ss_dssp             SS-EEEEEESS-SS-EEEEET-TTE--EEEESSTTSS-EE-----S-------EEEEEEEETT-EEEEEE-----ETT-E
T ss_pred             CCceEEEEEec-CCEEEEEec-CCE--EEEECCCCccccccccCCC--ccceeeEEEEEecCC-ceEEEc-----CCc-e
Confidence            35789999984 355566654 453  4445444433332211100  000122567777643 344444     444 4


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      .+...+.+..-..+..-..   -.+....+.... ++..++ ++..|.  ||....+...|+...   ..-.+.+..+..
T Consensus        83 ll~T~DgG~tW~~v~l~~~---lpgs~~~i~~l~-~~~~~l-~~~~G~--iy~T~DgG~tW~~~~---~~~~gs~~~~~r  152 (302)
T PF14870_consen   83 LLHTTDGGKTWERVPLSSK---LPGSPFGITALG-DGSAEL-AGDRGA--IYRTTDGGKTWQAVV---SETSGSINDITR  152 (302)
T ss_dssp             EEEESSTTSS-EE----TT----SS-EEEEEEEE-TTEEEE-EETT----EEEESSTTSSEEEEE----S----EEEEEE
T ss_pred             EEEecCCCCCcEEeecCCC---CCCCeeEEEEcC-CCcEEE-EcCCCc--EEEeCCCCCCeeEcc---cCCcceeEeEEE
Confidence            4444444433233322111   122344444443 343333 444454  444544444443322   234467888999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCC-eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGR-ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ  461 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  461 (540)
                      +++|.+++++.....+.-||.-... ..+.......+.++.|.|++   .+.+ ....|.|++=+.......... . ..
T Consensus       153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~---~lw~-~~~Gg~~~~s~~~~~~~~w~~-~-~~  226 (302)
T PF14870_consen  153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG---NLWM-LARGGQIQFSDDPDDGETWSE-P-II  226 (302)
T ss_dssp             -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS----EEE-EETTTEEEEEE-TTEEEEE-----B-
T ss_pred             CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC---CEEE-EeCCcEEEEccCCCCcccccc-c-cC
Confidence            9999999888776667778865322 22333445778899999986   2333 347888888772211111100 0 00


Q ss_pred             ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---ccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AHQKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       462 ~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      ........+..++|.+++...++|+ .|.+ +...+.  ++.-....   .-...++.|.|.++.+-+|. +.+|.|.-|
T Consensus       227 ~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~Dg--GktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  227 PIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDG--GKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESST--TSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             CcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCC--CccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence            1112334589999999888777665 4544 334443  33333222   22345788888766554444 578887665

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.47  E-value=5.3  Score=39.11  Aligned_cols=148  Identities=6%  Similarity=-0.013  Sum_probs=79.2

Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCC-eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc---
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGR-ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT---  452 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~---  452 (540)
                      ...+..+++|.+++.+.....++-||--... ..........+.++.+.+++   .+++++ .+|.+.. ....+..   
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg---~l~l~g-~~G~l~~-S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADG---GLWLLT-RGGGLYV-SKGTGLTEED  315 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCC---CEEEEe-CCceEEE-ecCCCCcccc
Confidence            4455667787777766554333444432211 12233344556778787766   344444 4555433 2222221   


Q ss_pred             -eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---ccccceeEEEEcCCCCEEEE
Q 009203          453 -EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AHQKRVFKAVWHYSHPLLIS  528 (540)
Q Consensus       453 -~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~i~~l~~s~~~~~l~s  528 (540)
                       .....    ........++++.|.+++..+++| ..|.+....-.   ++......   .-....+.+.|.++++.+++
T Consensus       316 ~~f~~~----~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~---G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~  387 (398)
T PLN00033        316 FDFEEA----DIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDG---GKSWKRDKGADNIAANLYSVKFFDDKKGFVL  387 (398)
T ss_pred             cceeec----ccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCC---CcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence             11110    001122358899999888776666 67866665433   33322222   22346789999877766655


Q ss_pred             EEcCCcEEEE
Q 009203          529 ISSDLNIGLH  538 (540)
Q Consensus       529 ~~~dg~v~iw  538 (540)
                       +.+|.|.-|
T Consensus       388 -G~~G~il~~  396 (398)
T PLN00033        388 -GNDGVLLRY  396 (398)
T ss_pred             -eCCcEEEEe
Confidence             468887665

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.33  E-value=0.0094  Score=56.98  Aligned_cols=148  Identities=13%  Similarity=0.081  Sum_probs=103.6

Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      +........|-+.+.-++.++.+..+..||-. ++..........+..++|+-.++  ..++.+-..+.+.+||+.+...
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegd--vlavlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGD--VLAVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccc--hhhhhhhcCCCeeechhhhhhH
Confidence            33444556777877778888888888899865 55556666677788888887543  3566667788999999986543


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                      ....+       +....-.-+.|++.+..++.|...|.+.|++..+  .+.......|..++++++|.+.+. .+.++.|
T Consensus       110 qqLE~-------gg~~s~sll~wsKg~~el~ig~~~gn~viynhgt--sR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd  179 (615)
T KOG2247|consen  110 QQLES-------GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGT--SRRIIVMGKHQRRGTQIAVTLEDY-VILCDCD  179 (615)
T ss_pred             HHHhc-------cCcchHHHHhhccCCccccccccccceEEEeccc--hhhhhhhcccccceeEEEecccce-eeecCcH
Confidence            22111       1111112268999999999999999999999987  444445555999999999998764 4444444


Q ss_pred             C
Q 009203          533 L  533 (540)
Q Consensus       533 g  533 (540)
                      .
T Consensus       180 ~  180 (615)
T KOG2247|consen  180 N  180 (615)
T ss_pred             H
Confidence            3

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.31  E-value=0.75  Score=49.27  Aligned_cols=135  Identities=10%  Similarity=0.074  Sum_probs=85.1

Q ss_pred             ccccccceEEecCCCCeEEEeccchh----------cc------cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC
Q 009203          193 EHRELIPLVRTSASPATIHCHTSNHV----------SS------LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR  256 (540)
Q Consensus       193 ~~~~~v~~~~~~~~d~~i~~~~~~~~----------~~------~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~  256 (540)
                      -|+.-+..+.+.+++..|..||...+          |.      ..-.-..++.|+|.-....|.+..|+.|++..+...
T Consensus       109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~  188 (1405)
T KOG3630|consen  109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL  188 (1405)
T ss_pred             ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence            34444455666666777777766411          22      222456788899854445677888999988876543


Q ss_pred             CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc-ccceeEEEEe
Q 009203          257 GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV-KGIINSIIFL  335 (540)
Q Consensus       257 ~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~  335 (540)
                      ....+-        ..-...+++++|+|.|+.++.|    ..+|++.-|...-    .....+...+.. ...|.+|+|.
T Consensus       189 ~~~v~s--------~p~t~~~Tav~WSprGKQl~iG----~nnGt~vQy~P~l----eik~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  189 AQNVTS--------FPVTNSQTAVLWSPRGKQLFIG----RNNGTEVQYEPSL----EIKSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             hhhhcc--------cCcccceeeEEeccccceeeEe----cCCCeEEEeeccc----ceeecccCCCcCCCcceeEEEEe
Confidence            211111        1233557899999999999999    9999999887652    222233322222 3679999998


Q ss_pred             CCCCCEEEE
Q 009203          336 PWENPCFAT  344 (540)
Q Consensus       336 p~~~~~l~s  344 (540)
                      . ...++++
T Consensus       253 ~-t~eflvv  260 (1405)
T KOG3630|consen  253 S-TQEFLVV  260 (1405)
T ss_pred             c-ceeEEEE
Confidence            7 5555554

>PRK04406 hypothetical protein; Provisional

Probab=94.29  E-value=0.35  Score=34.21  Aligned_cols=52  Identities=10%  Similarity=0.213  Sum_probs=45.4

Q ss_pred             ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203           24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR   75 (540)
Q Consensus        24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~   75 (540)
                      ..+..++.|.-.+.+.++-++.|...+...++++..+++++..+..++....
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   59 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD   59 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4567889999999999999999999999999999999999888888776654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.23  E-value=0.18  Score=30.94  Aligned_cols=32  Identities=16%  Similarity=0.123  Sum_probs=27.1

Q ss_pred             ceeEEEEeCCCC--CEEEEEecCCcEEEEecCCC
Q 009203          328 IINSIIFLPWEN--PCFATGGSDHAVVLWSERDA  359 (540)
Q Consensus       328 ~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~  359 (540)
                      .|.++.|+|..+  ++|+.+-.-|.|.|+|+++.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            588999998555  68888888899999999953

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.19  E-value=1.1  Score=45.94  Aligned_cols=119  Identities=14%  Similarity=0.206  Sum_probs=71.6

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe--cCCCeEEEEeecCCCCCeE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH--PQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~--~~~~~l~s~~~~~~~d~~i  302 (540)
                      ..+-+.-+. -++..++-+....+.|||...+......  .+     ...+.|.++.|.  |+|+.+++.    +..+.|
T Consensus        31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~--~f-----~~~~~I~dLDWtst~d~qsiLaV----Gf~~~v   98 (631)
T PF12234_consen   31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEE--SF-----SEDDPIRDLDWTSTPDGQSILAV----GFPHHV   98 (631)
T ss_pred             CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEee--ee-----cCCCceeeceeeecCCCCEEEEE----EcCcEE
Confidence            344444444 2444444444567999999876632222  11     345779999995  578877777    788889


Q ss_pred             EEEecC------CCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC
Q 009203          303 SVLNLN------KTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD  358 (540)
Q Consensus       303 ~vwd~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  358 (540)
                      .++--.      .+.....+..+....+...+|.+..|.+ +|.+++.++  ..+.|+|-.-
T Consensus        99 ~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk~~  157 (631)
T PF12234_consen   99 LLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDKWL  157 (631)
T ss_pred             EEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECCCc
Confidence            888432      1111223333333223345789999998 886665543  5688876543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK02793 phi X174 lysis protein; Provisional

Probab=94.15  E-value=0.57  Score=32.88  Aligned_cols=53  Identities=11%  Similarity=0.123  Sum_probs=46.1

Q ss_pred             ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhcc
Q 009203           24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRC   76 (540)
Q Consensus        24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~   76 (540)
                      ..+...+.|...+.+.++-++.|...+...++++..+++++..+..++.....
T Consensus         5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~   57 (72)
T PRK02793          5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP   57 (72)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            35678889999999999999999999999999999999998888888877654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.09  E-value=5.1  Score=37.46  Aligned_cols=154  Identities=14%  Similarity=0.107  Sum_probs=77.2

Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      ...+..+.-+++|.+++++    .....+.-||....  ........    ....|..|.|.| ++.+.+.+ ..|.|+.
T Consensus       144 ~gs~~~~~r~~dG~~vavs----~~G~~~~s~~~G~~--~w~~~~r~----~~~riq~~gf~~-~~~lw~~~-~Gg~~~~  211 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVS----SRGNFYSSWDPGQT--TWQPHNRN----SSRRIQSMGFSP-DGNLWMLA-RGGQIQF  211 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEE----TTSSEEEEE-TT-S--S-EEEE------SSS-EEEEEE-T-TS-EEEEE-TTTEEEE
T ss_pred             cceeEeEEECCCCcEEEEE----CcccEEEEecCCCc--cceEEccC----ccceehhceecC-CCCEEEEe-CCcEEEE
Confidence            3568888889999999997    66666677876532  11122211    246799999999 77766654 7788888


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee----ccCccEEEEeecCCCCC
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH----QIESKCMSVLPNPCDFN  429 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~  429 (540)
                      =+.......|...........-.+.+++|.+++...++|+. |.+ +.....|+.-...    ........+.|.+.+  
T Consensus       212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~--  287 (302)
T PF14870_consen  212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD--  287 (302)
T ss_dssp             EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT--
T ss_pred             ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCC--
Confidence            77222221221211211123344889999988777765554 433 4555666653332    234566777776544  


Q ss_pred             ceEEEEEcCCCeEEEE
Q 009203          430 LFMVQTGTPGRQLRLY  445 (540)
Q Consensus       430 ~~~l~~~~~dg~v~i~  445 (540)
                       .-++. +.+|.|.-|
T Consensus       288 -~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  288 -KGFVL-GQDGVLLRY  301 (302)
T ss_dssp             -EEEEE--STTEEEEE
T ss_pred             -ceEEE-CCCcEEEEe
Confidence             33444 456666544

>PHA02790 Kelch-like protein; Provisional

Probab=94.02  E-value=2.6  Score=42.78  Aligned_cols=180  Identities=6%  Similarity=-0.102  Sum_probs=84.5

Q ss_pred             CCCEEEEEecCC-----cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC--CeEEEEECCCCCeee
Q 009203          338 ENPCFATGGSDH-----AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD--KRIIGFDAGVGRADF  410 (540)
Q Consensus       338 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~  410 (540)
                      ++.+++.||.++     .+..||..+...    ..+........-.+++ .-+|...+.|+.+  ..+..||..+++-..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W----~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNW----IPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEE----EECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEE
Confidence            445566666542     466788776542    1111000111111222 2356777777753  357888887654322


Q ss_pred             eeccCc---cEEEEeecCCCCCceEEEEEcCC---CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203          411 KHQIES---KCMSVLPNPCDFNLFMVQTGTPG---RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS  484 (540)
Q Consensus       411 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  484 (540)
                      ......   ....+....     .+.+.|+.+   ..+..||..+..  ....   ............+++  +|.+.+.
T Consensus       346 ~~~l~~~r~~~~~~~~~g-----~IYviGG~~~~~~~ve~ydp~~~~--W~~~---~~m~~~r~~~~~~~~--~~~IYv~  413 (480)
T PHA02790        346 MPSLLKPRCNPAVASINN-----VIYVIGGHSETDTTTEYLLPNHDQ--WQFG---PSTYYPHYKSCALVF--GRRLFLV  413 (480)
T ss_pred             CCCCCCCCcccEEEEECC-----EEEEecCcCCCCccEEEEeCCCCE--EEeC---CCCCCccccceEEEE--CCEEEEE
Confidence            211111   111222221     456666644   346778876543  1110   011111111222233  6667777


Q ss_pred             EeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC-----CcEEEEe
Q 009203          485 GSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD-----LNIGLHK  539 (540)
Q Consensus       485 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-----g~v~iw~  539 (540)
                      |+   .+.+||..+.....+..+.........+.+  +|++.+.||.+     ..|..||
T Consensus       414 GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        414 GR---NAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             CC---ceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEE
Confidence            64   577898886444444444322222222333  77788888765     3455655

>PRK00736 hypothetical protein; Provisional

Probab=93.90  E-value=0.84  Score=31.62  Aligned_cols=51  Identities=16%  Similarity=0.289  Sum_probs=43.5

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203           25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR   75 (540)
Q Consensus        25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~   75 (540)
                      .++..+.|...+.+.++-++.|...+..-++++..+++++..+..++....
T Consensus         3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00736          3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            346788888999999999999999999999999999999888888876654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.88  E-value=7.1  Score=38.36  Aligned_cols=153  Identities=8%  Similarity=-0.009  Sum_probs=81.0

Q ss_pred             CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEe---CCCC-CEEEEEecCCcEEEEecCCCCC
Q 009203          286 GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL---PWEN-PCFATGGSDHAVVLWSERDAED  361 (540)
Q Consensus       286 ~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~-~~l~s~~~dg~i~iwd~~~~~~  361 (540)
                      ...|++|    +..|.++||+.........-..++.  .-..+|..+..-   +... ..||. -.-..+.||.+.....
T Consensus        37 ~d~IivG----S~~G~LrIy~P~~~~~~~~~lllE~--~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g  109 (418)
T PF14727_consen   37 SDKIIVG----SYSGILRIYDPSGNEFQPEDLLLET--QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDG  109 (418)
T ss_pred             ccEEEEe----ccccEEEEEccCCCCCCCccEEEEE--ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCC
Confidence            4589999    9999999999865432111111111  124567777653   2122 33444 3446788888733221


Q ss_pred             c------cccceeecccCCcceeEEEecc----C-CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203          362 S------WKPKALHRNLHSSAVMGVAGMQ----Q-KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       362 ~------~~~~~~~~~~~~~~v~~l~~s~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (540)
                      .      +....+....-......+++-|    . ..+|.+-+.||.+.+|+-+.-........---.-.+.+.+..   
T Consensus       110 ~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~t---  186 (418)
T PF14727_consen  110 TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRT---  186 (418)
T ss_pred             CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecC---
Confidence            0      1122221111122333444433    2 367888899999999998754322222211111233344433   


Q ss_pred             eEEEEEcCCCeEEEEECC
Q 009203          431 FMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~  448 (540)
                      ..+++++.+..+..|...
T Consensus       187 Dsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  187 DSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             CEEEEecCceeEEEecHH
Confidence            367788888888888764

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.88  E-value=10  Score=40.25  Aligned_cols=78  Identities=13%  Similarity=0.071  Sum_probs=52.9

Q ss_pred             cceeEEEEeCCCCCEEEEEecCCcEEEEecCC----------CCCcccccee------ecccCCcceeEEEeccC---CC
Q 009203          327 GIINSIIFLPWENPCFATGGSDHAVVLWSERD----------AEDSWKPKAL------HRNLHSSAVMGVAGMQQ---KQ  387 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~------~~~~~~~~v~~l~~s~~---~~  387 (540)
                      -.|..|.++| +|.+++..|..| |.|..+..          +...-..+.+      ....+...|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4588999999 999998888755 44444421          1110011111      11234568899999986   58


Q ss_pred             EEEEEeCCCeEEEEECCCC
Q 009203          388 IVLSAGADKRIIGFDAGVG  406 (540)
Q Consensus       388 ~l~~~~~dg~i~iwd~~~~  406 (540)
                      .|++-+.|+++|+||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            8999999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.69  E-value=8.2  Score=38.39  Aligned_cols=112  Identities=10%  Similarity=0.066  Sum_probs=61.3

Q ss_pred             cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCee--ee------eccCccEEEEeecCCC---CCceEEEEEc------
Q 009203          375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD--FK------HQIESKCMSVLPNPCD---FNLFMVQTGT------  437 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~------~~~~~~~~~~~~~~~~---~~~~~l~~~~------  437 (540)
                      ...+.|+|.|||++|++--..|.|++++..++...  ..      .......+.++++|+-   ....+|....      
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            45788999999988776655799999987654321  11      1135667899999873   2212333321      


Q ss_pred             ----CCCeEEEEECCCCc--c--eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC
Q 009203          438 ----PGRQLRLYDIRLRQ--T--EIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD  488 (540)
Q Consensus       438 ----~dg~v~i~d~~~~~--~--~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d  488 (540)
                          ....|.-|.+....  .  ....+.-......|.  -..|.|.|||.++++.+..
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence                12345556554211  0  111111000111233  4578899999877655443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.51  E-value=3.1  Score=33.05  Aligned_cols=117  Identities=9%  Similarity=0.091  Sum_probs=67.8

Q ss_pred             EEeCCCCCEEEEEecCCcEEEEecCCCCCcc--ccceeecccCCcceeEEEecc-----CCCEEEEEeCCCeEEEEECCC
Q 009203          333 IFLPWENPCFATGGSDHAVVLWSERDAEDSW--KPKALHRNLHSSAVMGVAGMQ-----QKQIVLSAGADKRIIGFDAGV  405 (540)
Q Consensus       333 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~l~~s~-----~~~~l~~~~~dg~i~iwd~~~  405 (540)
                      .|.. ....|+.++.-|.|.|++........  .-..+....-...|++++-.+     +...|+.|+. ..+..||+.+
T Consensus         5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN   82 (136)
T ss_pred             EeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence            4544 44467778888999999876543211  001111122456677776543     3456776665 4799999998


Q ss_pred             CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          406 GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      ..-++.......+.++.+-..+....-++..+.+..|.-||....+
T Consensus        83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            8887776666666666653222111223333445667667665433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.46  E-value=3.6  Score=42.92  Aligned_cols=157  Identities=17%  Similarity=0.106  Sum_probs=90.0

Q ss_pred             CCeEEEEeecCCCCCeEEEEecCCCCCcee---EEeecCCC-------------CcccceeEEEEeCC-CCCEEEEEecC
Q 009203          286 GNSLFSAHTADSGDSQISVLNLNKTKGRAC---VTFLDDKP-------------HVKGIINSIIFLPW-ENPCFATGGSD  348 (540)
Q Consensus       286 ~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~---~~~~~~~~-------------~~~~~v~~~~~~p~-~~~~l~s~~~d  348 (540)
                      .++|+.+     ..+.|.||+.+.......   ...+...+             ...-.|+.|..... +...|+.|..|
T Consensus        49 ~n~LFiA-----~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~Dd  123 (717)
T PF08728_consen   49 RNLLFIA-----YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDD  123 (717)
T ss_pred             CCEEEEE-----ECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecC
Confidence            6677775     588899999865322110   00010000             01112444443321 45678889999


Q ss_pred             CcEEEEecCC-------C----CC---ccccceeecccCCcceeEEEec--cCCCEEEEEeCCCeEEEEECCCC--Cee-
Q 009203          349 HAVVLWSERD-------A----ED---SWKPKALHRNLHSSAVMGVAGM--QQKQIVLSAGADKRIIGFDAGVG--RAD-  409 (540)
Q Consensus       349 g~i~iwd~~~-------~----~~---~~~~~~~~~~~~~~~v~~l~~s--~~~~~l~~~~~dg~i~iwd~~~~--~~~-  409 (540)
                      |.|.+|.+..       .    ..   ...............+++++++  ...++||+++....|.||-....  +.. 
T Consensus       124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~  203 (717)
T PF08728_consen  124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH  203 (717)
T ss_pred             CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence            9999996621       0    00   0001111112245678999998  77888888888888888765442  111 


Q ss_pred             -eeeccCccEEEEeecCCC--CCc-eEEEEEcCCCeEEEEEC
Q 009203          410 -FKHQIESKCMSVLPNPCD--FNL-FMVQTGTPGRQLRLYDI  447 (540)
Q Consensus       410 -~~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~dg~v~i~d~  447 (540)
                       ..+.....+-++.|.++.  ..+ ..+++++-.|.+.+|++
T Consensus       204 ~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  204 VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence             123344555566665544  333 37888899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK02119 hypothetical protein; Provisional

Probab=93.44  E-value=0.73  Score=32.45  Aligned_cols=51  Identities=14%  Similarity=0.173  Sum_probs=44.4

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203           25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR   75 (540)
Q Consensus        25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~   75 (540)
                      .++..+.|.-.+.+.++-++.|...+..-++++..+++++..+..++....
T Consensus         7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            457888888999999999999999999999999999999888888876654

>PRK00295 hypothetical protein; Provisional

Probab=93.27  E-value=1.2  Score=30.79  Aligned_cols=51  Identities=10%  Similarity=0.117  Sum_probs=43.0

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203           25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR   75 (540)
Q Consensus        25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~   75 (540)
                      .++..+.|.-.+.+.++-++.|...+..-++++..+++++..+..++....
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            346688888889999999999999999999999999988888887777654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.22  E-value=0.87  Score=40.43  Aligned_cols=67  Identities=10%  Similarity=0.076  Sum_probs=49.7

Q ss_pred             eEEEEEcCCCeEEEEECCCCcceeeeeccccccC-------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESS-------ESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .++++-+.+|.+++||+.+.+...........+.       .....|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus        23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4788889999999999998876554422222222       3556789999999998887765 58899999884

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=92.98  E-value=0.39  Score=33.47  Aligned_cols=51  Identities=16%  Similarity=0.292  Sum_probs=40.8

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203           25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR   75 (540)
Q Consensus        25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~   75 (540)
                      .++..+.|...+.+.++.++.|...+...+.++..+++++..+..++..+.
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356788899999999999999999999999999999999888888887765

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.96  E-value=2.8  Score=36.01  Aligned_cols=103  Identities=7%  Similarity=0.016  Sum_probs=59.4

Q ss_pred             CCCEEEEEec--CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEE-EEEeCCCeEEEEECCCCCeeeeecc
Q 009203          338 ENPCFATGGS--DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV-LSAGADKRIIGFDAGVGRADFKHQI  414 (540)
Q Consensus       338 ~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~  414 (540)
                      ++.++.+.+.  ...|++||+.+++..+....-........++.     -|..+ ...=.+|.-..+|.++.+++-.+..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFSY  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhccccc
Confidence            5566666553  34699999998875332221100011111221     12333 3334578889999999888877777


Q ss_pred             CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          415 ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      ++....++.+..     -|..++...+++.-|..+.
T Consensus       130 ~GeGWgLt~d~~-----~LimsdGsatL~frdP~tf  160 (262)
T COG3823         130 EGEGWGLTSDDK-----NLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             CCcceeeecCCc-----ceEeeCCceEEEecCHHHh
Confidence            777777766554     3555555556766666543

>PRK04325 hypothetical protein; Provisional

Probab=92.39  E-value=1.5  Score=31.05  Aligned_cols=53  Identities=8%  Similarity=0.120  Sum_probs=45.6

Q ss_pred             CChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203           23 NSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR   75 (540)
Q Consensus        23 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~   75 (540)
                      +..++.++.|...+.+.++-++.|...+...++++..+++++..+..++....
T Consensus         5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~   57 (74)
T PRK04325          5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN   57 (74)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44567888999999999999999999999999999999999888888776654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.20  E-value=18  Score=38.49  Aligned_cols=84  Identities=17%  Similarity=0.069  Sum_probs=58.9

Q ss_pred             CcceeEEEeccCCCEEEEEeCCCeEEEEECCC---------CCe-e-----------eeeccCccEEEEeecCCCCCceE
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV---------GRA-D-----------FKHQIESKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~---------~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~  432 (540)
                      .-.|..+.++|+|.+++..|..|.+.+.=.+.         |+. +           +.......+..+.|+|.+.++..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            34688999999999999998876544433221         111 1           11123457788999999876678


Q ss_pred             EEEEcCCCeEEEEECCCCcceeeee
Q 009203          433 VQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      |++-..|+++++||+.....+...+
T Consensus       164 l~vLtsdn~lR~y~~~~~~~p~~v~  188 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQHPWQVL  188 (717)
T ss_pred             EEEEecCCEEEEEecCCCCCCeEEE
Confidence            9999999999999998765444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK00846 hypothetical protein; Provisional

Probab=92.03  E-value=1.9  Score=30.54  Aligned_cols=54  Identities=7%  Similarity=0.129  Sum_probs=45.3

Q ss_pred             ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhccC
Q 009203           24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQ   77 (540)
Q Consensus        24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~   77 (540)
                      ..+...+.|...+...+.-++.|...+...+..+..++.++..+..+|......
T Consensus        10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s   63 (77)
T PRK00846         10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST   63 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            345788888888999999999999999999999999999888888888776543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.93  E-value=2  Score=41.97  Aligned_cols=140  Identities=14%  Similarity=0.141  Sum_probs=86.7

Q ss_pred             ccCCCEEEE-EeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc----eEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          383 MQQKQIVLS-AGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL----FMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       383 s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      ..+..+|+. |.....++-.|+..|+.+-.......+ -+.++|.....    ..-++|-.+..|.-.|.+-....+...
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            334555554 444556888888888887776666555 55666643111    122345556677667766544322211


Q ss_pred             ccccccCccccCeEEEEEcC----CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203          458 GWKQESSESQSALINQSWSP----DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp----~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                      .       ....++.-.||.    ...|+|+|+..|.|++||.-.  .+.-..+++-...|-.+..+.+|+++++.|..
T Consensus       555 e-------sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig--~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         555 E-------SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG--KRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             e-------ehhccccccccccccccCceEEEecCCCceeeehhhc--chhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence            1       111222223332    345999999999999999774  34444566777789999999999988777654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.75  E-value=0.41  Score=49.80  Aligned_cols=188  Identities=12%  Similarity=0.030  Sum_probs=98.5

Q ss_pred             CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCc----eeEEe
Q 009203          244 LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGR----ACVTF  318 (540)
Q Consensus       244 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~----~~~~~  318 (540)
                      ..+.|++-+....-....+.       .|..+.|-.+.|-.. ...+.      ..-|.+.|||++--++.    ..++.
T Consensus       109 ~~~~vrvaN~~~sm~~~~l~-------kgf~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v~~  175 (1283)
T KOG1916|consen  109 MENGVRVANQEPSMRHNELA-------KGFPGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEVTP  175 (1283)
T ss_pred             hhhhhhhccCcchhHHHHHH-------hcCCCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEEee
Confidence            34556776665433211222       355666777877331 11111      12345788887642221    11222


Q ss_pred             ecCCCCcccceeEEEEeCC--CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE-----------eccC
Q 009203          319 LDDKPHVKGIINSIIFLPW--ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA-----------GMQQ  385 (540)
Q Consensus       319 ~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~-----------~s~~  385 (540)
                      ...   ....+.-+.|.|.  +.-++..+-.++.|++..+.+...    ..+  .+|...+..++           .+||
T Consensus       176 ~~p---~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~--rsHs~~~~d~a~~~~g~~~l~~lSpD  246 (1283)
T KOG1916|consen  176 ITP---YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLF--RSHSQRVTDMAFFAEGVLKLASLSPD  246 (1283)
T ss_pred             cCc---CCCCcceeeecccccccceeeeccCCCceeEeeechHHH----HHH--HhcCCCcccHHHHhhchhhheeeCCC
Confidence            221   1233445555542  445666777888999887776541    222  22666665544           4889


Q ss_pred             CCEEEEEeCCCeEEEEECCC-CC----eeeeecc-C-ccEEEEeecCC-------CCCceEEEEE-cCCCeEEEEECCCC
Q 009203          386 KQIVLSAGADKRIIGFDAGV-GR----ADFKHQI-E-SKCMSVLPNPC-------DFNLFMVQTG-TPGRQLRLYDIRLR  450 (540)
Q Consensus       386 ~~~l~~~~~dg~i~iwd~~~-~~----~~~~~~~-~-~~~~~~~~~~~-------~~~~~~l~~~-~~dg~v~i~d~~~~  450 (540)
                      |..++.++.||.++.|.+.- |+    ++..... . ....|+.++..       +.. .+++++ ..+..+++|.....
T Consensus       247 Gtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w-~~~Itttd~nre~k~w~~a~w  325 (1283)
T KOG1916|consen  247 GTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKW-VLRITTTDVNREEKFWAEAPW  325 (1283)
T ss_pred             CcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcccee-EEEEecccCCcceeEeeccch
Confidence            99999999999988887642 22    2222111 1 22223223221       111 334444 34556999998877


Q ss_pred             ccee
Q 009203          451 QTEI  454 (540)
Q Consensus       451 ~~~~  454 (540)
                      +|.+
T Consensus       326 ~Cll  329 (1283)
T KOG1916|consen  326 QCLL  329 (1283)
T ss_pred             hhhh
Confidence            7653

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.75  E-value=3.8  Score=39.59  Aligned_cols=138  Identities=11%  Similarity=0.087  Sum_probs=77.1

Q ss_pred             eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC
Q 009203          278 EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER  357 (540)
Q Consensus       278 ~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  357 (540)
                      +.+-|...++.|++.     ..|.+.-|-+........+. +..  ...++|.++.|++ |.+.|+.--.|.+|.+++..
T Consensus        26 ngvFfDDaNkqlfav-----rSggatgvvvkgpndDVpiS-fdm--~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~   96 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAV-----RSGGATGVVVKGPNDDVPIS-FDM--DDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFI   96 (657)
T ss_pred             cceeeccCcceEEEE-----ecCCeeEEEEeCCCCCCCce-eee--cCCCceeEEEecc-CcceEEEEecCceEEEEecC
Confidence            345555445555543     45555666555332222222 221  2357899999999 99999999999999999985


Q ss_pred             CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEEC--CCCCeeeeeccCccEEEEeecCCC
Q 009203          358 DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA--GVGRADFKHQIESKCMSVLPNPCD  427 (540)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~  427 (540)
                      ..+... .........+..|.++.|+.+ .-++..+..| +-+|-.  ..............+.-..|.++.
T Consensus        97 ~d~~~l-~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et  165 (657)
T KOG2377|consen   97 PDNSQL-EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPET  165 (657)
T ss_pred             CCchhh-HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcccc
Confidence            443210 111122334556899999865 5556555554 444433  222222223334445555555544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.61  E-value=6.9  Score=40.32  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=28.2

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG  257 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~  257 (540)
                      .-++++.-+| +++-++.+..||+|++|+.....
T Consensus        15 e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~   47 (1636)
T KOG3616|consen   15 EFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRR   47 (1636)
T ss_pred             ceeeeeeecC-CCceEEEEecCCcEEEEeecccc
Confidence            4577888889 79999999999999999987654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.55  E-value=1.1  Score=39.86  Aligned_cols=69  Identities=9%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCC------CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP------KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK  309 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~------~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~  309 (540)
                      +.+|++-+.+|.+++||+.+.+.......-......      .....|..+.++.+|.-|++-     .+|....|+.+-
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-----sng~~y~y~~~L   96 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-----SNGDSYSYSPDL   96 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-----eCCCEEEecccc
Confidence            677888899999999999988764433111111111      345668888888888877765     457788888764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=91.45  E-value=13  Score=35.41  Aligned_cols=151  Identities=11%  Similarity=0.126  Sum_probs=83.3

Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCe------EEEEECCC--CC--eee------eeccCc--------cEEEEeecCCCC
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKR------IIGFDAGV--GR--ADF------KHQIES--------KCMSVLPNPCDF  428 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~------i~iwd~~~--~~--~~~------~~~~~~--------~~~~~~~~~~~~  428 (540)
                      .-+.+..|.+.+++..+++.+.+|.      +..+++..  +.  .+.      .....+        ..-++++.+++ 
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-   96 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-   96 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-
Confidence            3456788888876667777777777      66666543  10  000      011111        22245554444 


Q ss_pred             CceEEEEEcCC------CeEEEEECCCCcceeeeecccc---------ccCccccCeEEEEEcCCCCEEEEEeC-----C
Q 009203          429 NLFMVQTGTPG------RQLRLYDIRLRQTEIHAFGWKQ---------ESSESQSALINQSWSPDGLYITSGSA-----D  488 (540)
Q Consensus       429 ~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~sp~g~~l~sg~~-----d  488 (540)
                        .++++.-.+      ..|..++.. +.. ...+....         .........-+++++|+|+.|+++.+     |
T Consensus        97 --~~~is~E~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d  172 (326)
T PF13449_consen   97 --SFWISSEGGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQD  172 (326)
T ss_pred             --CEEEEeCCccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCC
Confidence              456665556      678888876 332 22221111         11234567899999999996665532     2


Q ss_pred             C--c-------EEEEeccCCC-Ccccccc----cc-----cccceeEEEEcCCCCEEEE
Q 009203          489 P--V-------IHLFDIRYSA-NKPSQSI----RA-----HQKRVFKAVWHYSHPLLIS  528 (540)
Q Consensus       489 g--~-------i~iwd~~~~~-~~~~~~~----~~-----h~~~i~~l~~s~~~~~l~s  528 (540)
                      +  .       ++|+.++... +.+...+    ..     ....|..+.+-+++++|+.
T Consensus       173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             CcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            2  1       5666555321 2222222    11     3457899999999987765

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.43  E-value=8.7  Score=33.18  Aligned_cols=151  Identities=9%  Similarity=0.020  Sum_probs=73.4

Q ss_pred             CCcEEEEEeCC--ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC
Q 009203          235 NEQLFVTSALD--GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG  312 (540)
Q Consensus       235 ~~~~l~tg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~  312 (540)
                      +|.++.+.+.-  ..|++||+.+++.+........   .-....++.+   .|.-+.++     -.+|.-..+|.++-  
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~---~~FgEGit~~---gd~~y~LT-----w~egvaf~~d~~t~--  121 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD---TVFGEGITKL---GDYFYQLT-----WKEGVAFKYDADTL--  121 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCc---cccccceeec---cceEEEEE-----eccceeEEEChHHh--
Confidence            46666666543  4699999998876544432210   0111122221   12123333     47888888988874  


Q ss_pred             ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEE
Q 009203          313 RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA  392 (540)
Q Consensus       313 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  392 (540)
                       +++..+.-    .+.=+.++-   ++..|+.+....+++.-|..+-....+.........-..++.+.|- +|...+-.
T Consensus       122 -~~lg~~~y----~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANV  192 (262)
T COG3823         122 -EELGRFSY----EGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANV  192 (262)
T ss_pred             -hhhccccc----CCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEee
Confidence             33333322    334566655   4444555554556777776664432222222211122234445554 45544443


Q ss_pred             eCCCeEEEEECCCCC
Q 009203          393 GADKRIIGFDAGVGR  407 (540)
Q Consensus       393 ~~dg~i~iwd~~~~~  407 (540)
                      =.+..|...|..+|+
T Consensus       193 w~t~~I~rI~p~sGr  207 (262)
T COG3823         193 WQTTRIARIDPDSGR  207 (262)
T ss_pred             eeecceEEEcCCCCc
Confidence            333444444554444

>PLN02153 epithiospecifier protein

Probab=91.29  E-value=14  Score=35.47  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=15.7

Q ss_pred             CCCEEEEEecC-----CcEEEEecCCCC
Q 009203          338 ENPCFATGGSD-----HAVVLWSERDAE  360 (540)
Q Consensus       338 ~~~~l~s~~~d-----g~i~iwd~~~~~  360 (540)
                      ++.+++.|+.+     ..+.+||+.+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNE  112 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence            56677777753     247788887654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.19  E-value=12  Score=34.27  Aligned_cols=196  Identities=13%  Similarity=0.131  Sum_probs=116.3

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      -+..+.++.  ++...+    ..+.-++|.|+.+......+..+..    .+.-.++..   .|++...+..|.-+-+.|
T Consensus        88 l~~Dv~vse--~yvyva----d~ssGL~IvDIS~P~sP~~~~~lnt----~gyaygv~v---sGn~aYVadlddgfLivd  154 (370)
T COG5276          88 LFADVRVSE--EYVYVA----DWSSGLRIVDISTPDSPTLIGFLNT----DGYAYGVYV---SGNYAYVADLDDGFLIVD  154 (370)
T ss_pred             hhheeEecc--cEEEEE----cCCCceEEEeccCCCCcceeccccC----CceEEEEEe---cCCEEEEeeccCcEEEEE
Confidence            356677764  566666    7788899999998866555555543    244455555   678888888666678899


Q ss_pred             cCCCCCccccceeec-ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-ee--eeccCccEEEEeecCCCCCce
Q 009203          356 ERDAEDSWKPKALHR-NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DF--KHQIESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~  431 (540)
                      +.+...   +...-+ ......-..++.|  |++-+.+..|+-+.+.|+.+... .+  ....+....++..+++.   .
T Consensus       155 vsdpss---P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr---~  226 (370)
T COG5276         155 VSDPSS---PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR---A  226 (370)
T ss_pred             CCCCCC---ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe---e
Confidence            988764   222221 1122333556665  78888888899999999987543 22  23334467777777753   2


Q ss_pred             EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203          432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS  499 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~  499 (540)
                      +++.  .+..+.+-|..+...+.. ++...  ......++.+..  .|++......+.-+-+-|+.++
T Consensus       227 y~vv--y~egvlivd~s~~ssp~~-~gsye--t~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         227 YLVV--YDEGVLIVDVSGPSSPTV-FGSYE--TSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             EEEE--cccceEEEecCCCCCceE-eeccc--cCCcccccceec--ccceeeeeccccCceeEeccCC
Confidence            3333  344566777766553221 11110  011112232333  4666666666666777777764

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.14  E-value=11  Score=34.00  Aligned_cols=231  Identities=16%  Similarity=0.154  Sum_probs=137.6

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      .-..|+-.|| |..-.++...+.|--.|-.+++...-.+        +.......|..-|||..-++-    +.. .|.-
T Consensus        63 ap~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypL--------g~Ga~Phgiv~gpdg~~Witd----~~~-aI~R  128 (353)
T COG4257          63 APFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPL--------GSGASPHGIVVGPDGSAWITD----TGL-AIGR  128 (353)
T ss_pred             CccccccCCC-CceEEecCccccceecCCCCCceEEEec--------CCCCCCceEEECCCCCeeEec----Ccc-eeEE
Confidence            3455666775 7777777777777666777666433222        222334567777888765553    222 4555


Q ss_pred             EecCCCCCceeEEeecC-CCCcccceeEEEEeCCCCCEEEEEec---------CCcEEEEecCCCCCccccceeecccCC
Q 009203          305 LNLNKTKGRACVTFLDD-KPHVKGIINSIIFLPWENPCFATGGS---------DHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                      .|-++..    ++.+.. ..+..+......|.+ .|++-+++..         .+.|++|+.-               ..
T Consensus       129 ~dpkt~e----vt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~~~i~vfpaP---------------qG  188 (353)
T COG4257         129 LDPKTLE----VTRFPLPLEHADANLETAVFDP-WGNLWFTGQIGAYGRLDPARNVISVFPAP---------------QG  188 (353)
T ss_pred             ecCcccc----eEEeecccccCCCcccceeeCC-CccEEEeeccccceecCcccCceeeeccC---------------CC
Confidence            5555432    222211 112345578889999 8888888753         1234444433               23


Q ss_pred             cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      ...+.|+..|+|...++.-.+..|-..|...+........   ......+..+|.+   ..-++....+.+..||-.+..
T Consensus       189 ~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig---~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         189 GGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG---RAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             CCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccC---cEEEeccCCceeeEeCccccc
Confidence            4467889999999998887888888888877644222111   2223344445544   566676777788888876544


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                        ...+    .+.+......++..+..|+.-.+-...|.|.-||.++
T Consensus       266 --W~ey----pLPgs~arpys~rVD~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         266 --WIEY----PLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             --ceee----eCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence              1111    2344445566777776776666555667777777775

>PHA02790 Kelch-like protein; Provisional

Probab=90.97  E-value=20  Score=36.47  Aligned_cols=106  Identities=4%  Similarity=-0.078  Sum_probs=50.8

Q ss_pred             cCCCeEEEEeecCCCC--CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC---cEEEEecCC
Q 009203          284 PQGNSLFSAHTADSGD--SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH---AVVLWSERD  358 (540)
Q Consensus       284 ~~~~~l~s~~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~  358 (540)
                      -+|...+.|    +.+  ..+..||..++.   . ......+........+.+   ++.+.+.||.++   .+..||..+
T Consensus       317 ~~~~iYviG----G~~~~~sve~ydp~~n~---W-~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        317 ANNKLYVVG----GLPNPTSVERWFHGDAA---W-VNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             ECCEEEEEC----CcCCCCceEEEECCCCe---E-EECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCC
Confidence            356666666    432  457788876541   1 111111111111222222   677888887653   477888877


Q ss_pred             CCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe
Q 009203          359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA  408 (540)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~  408 (540)
                      ..-  ..  .........-.+++ .-+|...+.|   |.+.+||..+++-
T Consensus       386 ~~W--~~--~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~~~W  427 (480)
T PHA02790        386 DQW--QF--GPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCESSNTW  427 (480)
T ss_pred             CEE--Ee--CCCCCCccccceEE-EECCEEEEEC---CceEEecCCCCcE
Confidence            642  11  11000111111222 2245655655   3577889876654

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.79  E-value=14  Score=34.46  Aligned_cols=61  Identities=8%  Similarity=-0.073  Sum_probs=40.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC-ccccccc---ccccceeEEEEcC--CCCEEEEE
Q 009203          469 ALINQSWSPDGLYITSGSADPVIHLFDIRYSAN-KPSQSIR---AHQKRVFKAVWHY--SHPLLISI  529 (540)
Q Consensus       469 ~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~-~~~~~~~---~h~~~i~~l~~s~--~~~~l~s~  529 (540)
                      ....++++++|.++++--..+.|..|+...+.. ..+..+.   ..-..+.++.+.+  +|.+.+.+
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            556789999999999999999999999985211 1111221   1133678899988  77765554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.72  E-value=8.9  Score=37.21  Aligned_cols=108  Identities=7%  Similarity=0.151  Sum_probs=75.3

Q ss_pred             ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 009203          413 QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIH  492 (540)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~  492 (540)
                      ...+.+.++.|++++   +.+++--.+++|.+++....+.....   ....+.....|.+..|+.+ .-+|.....| +-
T Consensus        64 ~d~G~I~SIkFSlDn---kilAVQR~~~~v~f~nf~~d~~~l~~---~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e  135 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDN---KILAVQRTSKTVDFCNFIPDNSQLEY---TQECKTKNANILGFCWTSS-TEIAFITDQG-IE  135 (657)
T ss_pred             cCCCceeEEEeccCc---ceEEEEecCceEEEEecCCCchhhHH---HHHhccCcceeEEEEEecC-eeEEEEecCC-eE
Confidence            344678999999998   79999999999999998543321111   1122233446899999865 5666665555 77


Q ss_pred             EEeccCCCCcccccccccccceeEEEEcCCCCEEEEE
Q 009203          493 LFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI  529 (540)
Q Consensus       493 iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~  529 (540)
                      +|..... .+.++..+.|...|+-..|.++.+.+.-+
T Consensus       136 ~y~v~pe-krslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  136 FYQVLPE-KRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             EEEEchh-hhhhhhhhhcccCccEEEEccccceEeee
Confidence            8877752 45666777788889999999988754433

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.45  E-value=1.9  Score=36.78  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=23.3

Q ss_pred             ceeEEEEcCCC------CEEEEEEcCCcEEEEe
Q 009203          513 RVFKAVWHYSH------PLLISISSDLNIGLHK  539 (540)
Q Consensus       513 ~i~~l~~s~~~------~~l~s~~~dg~v~iw~  539 (540)
                      .|.+++|||.|      -+|++...+|.|.||.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~  119 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG  119 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence            68899999966      3789999999999985

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=89.71  E-value=15  Score=33.22  Aligned_cols=191  Identities=15%  Similarity=0.092  Sum_probs=112.5

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEec
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE  356 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  356 (540)
                      -..++-.|||..-+++    ...+.|--.|..+++.   .+.--+   .......|..-| ++..-++-+.. .|.-.|-
T Consensus        64 p~dvapapdG~VWft~----qg~gaiGhLdP~tGev---~~ypLg---~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dp  131 (353)
T COG4257          64 PFDVAPAPDGAVWFTA----QGTGAIGHLDPATGEV---ETYPLG---SGASPHGIVVGP-DGSAWITDTGL-AIGRLDP  131 (353)
T ss_pred             ccccccCCCCceEEec----CccccceecCCCCCce---EEEecC---CCCCCceEEECC-CCCeeEecCcc-eeEEecC
Confidence            3467788999888888    8888888889888732   222222   234466788888 77666654433 4555555


Q ss_pred             CCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC---------CeEEEEECCCCCeeeeeccCccEEEEeecCCC
Q 009203          357 RDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD---------KRIIGFDAGVGRADFKHQIESKCMSVLPNPCD  427 (540)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  427 (540)
                      .+.+..  ...+....-........|.+.|++-+++...         +.|++|+.-.         +.....++..|++
T Consensus       132 kt~evt--~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq---------G~gpyGi~atpdG  200 (353)
T COG4257         132 KTLEVT--RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ---------GGGPYGICATPDG  200 (353)
T ss_pred             cccceE--EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC---------CCCCcceEECCCC
Confidence            554421  1111122344567889999999988887631         2344444332         2334556666766


Q ss_pred             CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                         ...++.-.++.|-..|..++.......     .......-..+--+|.|..-++-...+.+..||..+
T Consensus       201 ---svwyaslagnaiaridp~~~~aev~p~-----P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         201 ---SVWYASLAGNAIARIDPFAGHAEVVPQ-----PNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             ---cEEEEeccccceEEcccccCCcceecC-----CCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence               345554555566666665543221110     111122344556677888888877788888888775

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.57  E-value=9.3  Score=30.49  Aligned_cols=112  Identities=13%  Similarity=0.160  Sum_probs=68.1

Q ss_pred             EEEecCCCeEEEEeecCCCCCeEEEEecCCCC-----CceeEEeecCCCCcccceeEEEEeCC----CCCEEEEEecCCc
Q 009203          280 IAWHPQGNSLFSAHTADSGDSQISVLNLNKTK-----GRACVTFLDDKPHVKGIINSIIFLPW----ENPCFATGGSDHA  350 (540)
Q Consensus       280 ~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~s~~~dg~  350 (540)
                      -.|......|+.+    +..+.|.|++.....     ....++.+..    ...|++|+-.+.    ..+.|+.|+. ..
T Consensus         4 GkfDG~~pcL~~a----T~~gKV~IH~ph~~~~~~~~~~~~i~~LNi----n~~italaaG~l~~~~~~D~LliGt~-t~   74 (136)
T PF14781_consen    4 GKFDGVHPCLACA----TTGGKVFIHNPHERGQRTGRQDSDISFLNI----NQEITALAAGRLKPDDGRDCLLIGTQ-TS   74 (136)
T ss_pred             EEeCCCceeEEEE----ecCCEEEEECCCccccccccccCceeEEEC----CCceEEEEEEecCCCCCcCEEEEecc-ce
Confidence            4555555678888    788899999876432     1223444443    345777765442    3567777775 67


Q ss_pred             EEEEecCCCCCccccceeecccCCcceeEEEecc---CCCEEEEEeCCCeEEEEECCCC
Q 009203          351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ---QKQIVLSAGADKRIIGFDAGVG  406 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~~~dg~i~iwd~~~~  406 (540)
                      +..||+.....     .+. ..-.+.|+++.+-.   ...-++..+.+..|.-||....
T Consensus        75 llaYDV~~N~d-----~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~  127 (136)
T PF14781_consen   75 LLAYDVENNSD-----LFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN  127 (136)
T ss_pred             EEEEEcccCch-----hhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence            99999998753     222 22446788887732   1233444555567777777643

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=89.48  E-value=21  Score=34.49  Aligned_cols=186  Identities=11%  Similarity=0.038  Sum_probs=99.1

Q ss_pred             CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec----cCCCE--EEEEeC-C---CeEEEEECC--C
Q 009203          338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM----QQKQI--VLSAGA-D---KRIIGFDAG--V  405 (540)
Q Consensus       338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s----~~~~~--l~~~~~-d---g~i~iwd~~--~  405 (540)
                      ...+++....++-+.+||+.....    +.+.    .+.++.+..-    -+|+.  |+.++. +   ..|++|.+.  +
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk~l----q~~~----~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~  138 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGKEL----QSLP----VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT  138 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS-EE----EEE-----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred             ccceEEEEeCCCCEEEEcCCCcEE----Eeec----CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence            456777778888999999988652    3221    2334433331    13433  344432 2   468888664  3


Q ss_pred             CCeeeeec-------c--CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc------eeeeeccccccCccccCe
Q 009203          406 GRADFKHQ-------I--ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT------EIHAFGWKQESSESQSAL  470 (540)
Q Consensus       406 ~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~v  470 (540)
                      +.......       .  ...-.|+.-++.... .+++....+|.+..|.+.....      .++.+.       -.+.+
T Consensus       139 g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~-~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-------~~sQ~  210 (381)
T PF02333_consen  139 GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGA-LYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-------VGSQP  210 (381)
T ss_dssp             TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT---EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--------SS-E
T ss_pred             CcceEcCCCCcccccccccceeeEEeecCCCCc-EEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-------CCCcc
Confidence            33211111       1  112344444554333 5777778889998888863221      222221       12368


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeccCCC---Ccccccccc--cccceeEEEEc--CCCC--EEEEEEcCCcEEEEe
Q 009203          471 INQSWSPDGLYITSGSADPVIHLFDIRYSA---NKPSQSIRA--HQKRVFKAVWH--YSHP--LLISISSDLNIGLHK  539 (540)
Q Consensus       471 ~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~---~~~~~~~~~--h~~~i~~l~~s--~~~~--~l~s~~~dg~v~iw~  539 (540)
                      -.|..+....+|+.|-++.-|+-|+.+...   +..+....+  ....|-.|++-  .++.  +|+|.-.+++..||+
T Consensus       211 EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~  288 (381)
T PF02333_consen  211 EGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD  288 (381)
T ss_dssp             EEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred             eEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence            888998888899999988878778776321   122222222  33467777764  3443  455555677888886

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=89.43  E-value=21  Score=34.40  Aligned_cols=54  Identities=7%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             CCCEEEEEeCC----------------------CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203          478 DGLYITSGSAD----------------------PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       478 ~g~~l~sg~~d----------------------g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      ++++++.|+.+                      ..+.+||........+..+....  -...+..-++++++.||.+.
T Consensus       257 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~--~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       257 NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL--AYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc--eeeEEEEcCCEEEEEeccCC
Confidence            67788888753                      14678888764333333333211  12223344778888888663

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.22  E-value=31  Score=36.03  Aligned_cols=200  Identities=14%  Similarity=0.083  Sum_probs=92.4

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ++.-+|..+|.  ++.=..+.-..|+|+++.. ..+.++..       .| ..+..+.|+.+..+|+.     ..+|++.
T Consensus        44 gGpIAV~r~p~--~~~~~~~a~~~I~If~~sG-~lL~~~~w-------~~-~~lI~mgWs~~eeLI~v-----~k~g~v~  107 (829)
T KOG2280|consen   44 GGPIAVTRSPS--KLVPLYSARPYIRIFNISG-QLLGRILW-------KH-GELIGMGWSDDEELICV-----QKDGTVH  107 (829)
T ss_pred             CCceEEEeccc--ccccccccceeEEEEeccc-cchHHHHh-------cC-CCeeeecccCCceEEEE-----eccceEE
Confidence            34555555552  1111113445688888763 33333321       22 25778999988777766     6999999


Q ss_pred             EEecCCCCCceeEEee-cCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE-EecCCCCCccccceeecccCCcceeEEE
Q 009203          304 VLNLNKTKGRACVTFL-DDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL-WSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      +|++-.. .   +... -+.+.....|..+.|.. +|-.+.+  .+|.+.+ -+..... .++...+.  +..-...|-.
T Consensus       108 Vy~~~ge-~---ie~~svg~e~~~~~I~ec~~f~-~GVavlt--~~g~v~~i~~~~~~~-~~~~~diP--~~~~~~~~Wt  177 (829)
T KOG2280|consen  108 VYGLLGE-F---IESNSVGFESQMSDIVECRFFH-NGVAVLT--VSGQVILINGVEEPK-LRKMPDIP--YNELPKSCWT  177 (829)
T ss_pred             Eeecchh-h---hcccccccccccCceeEEEEec-CceEEEe--cCCcEEEEcCCCcch-hhhCCCCC--CccCCCccee
Confidence            9998732 1   1110 11111223355555544 5533333  3444443 3333322 11111111  1111112222


Q ss_pred             eccCCC---EEEEEe-CCC-eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          382 GMQQKQ---IVLSAG-ADK-RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       382 ~s~~~~---~l~~~~-~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      ..+++.   .++-.. ..+ .+..-+..+.+..........+..+..+|..   .+|+--...|.|.+-+....+.
T Consensus       178 ~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~---~~laLyt~~G~i~~vs~D~~~~  250 (829)
T KOG2280|consen  178 VFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNR---RFLALYTETGKIWVVSIDLSQI  250 (829)
T ss_pred             EecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCc---ceEEEEecCCcEEEEecchhhh
Confidence            222211   111111 000 0111111112211122223566677777766   6888888889998888876553

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.05  E-value=0.18  Score=48.62  Aligned_cols=146  Identities=14%  Similarity=0.167  Sum_probs=98.2

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCE-EEEEecCCcEEEEe
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC-FATGGSDHAVVLWS  355 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~dg~i~iwd  355 (540)
                      .....|-+.+.-++.+    +.+..+..||-...      ..+..  ...+....++|.- +++. ++.+-..+.+.+||
T Consensus        37 pi~~~w~~e~~nlava----ca~tiv~~YD~agq------~~le~--n~tg~aldm~wDk-egdvlavlAek~~piylwd  103 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVA----CANTIVIYYDKAGQ------VILEL--NPTGKALDMAWDK-EGDVLAVLAEKTGPIYLWD  103 (615)
T ss_pred             cceeeEecCCCceehh----hhhhHHHhhhhhcc------eeccc--CCchhHhhhhhcc-ccchhhhhhhcCCCeeech
Confidence            3456788887778887    78888999987632      11222  1235567788887 5544 45566779999999


Q ss_pred             cCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEE
Q 009203          356 ERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l  433 (540)
                      +.+...    +.+...+ |....  +.|++.+..++.+...|.+.+++..+.+.+.... +.....++++.+.+    +.
T Consensus       104 ~n~eyt----qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd----~v  173 (615)
T KOG2247|consen  104 VNSEYT----QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED----YV  173 (615)
T ss_pred             hhhhhH----HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc----ee
Confidence            987542    3332211 22222  7889988899999899999999998766554433 55677888888876    66


Q ss_pred             EEEcCCCeEEEE
Q 009203          434 QTGTPGRQLRLY  445 (540)
Q Consensus       434 ~~~~~dg~v~i~  445 (540)
                      +.++.|..+.+-
T Consensus       174 il~dcd~~L~v~  185 (615)
T KOG2247|consen  174 ILCDCDNTLSVT  185 (615)
T ss_pred             eecCcHHHHHHh
Confidence            666666554433

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.57  E-value=23  Score=33.79  Aligned_cols=161  Identities=12%  Similarity=0.156  Sum_probs=82.8

Q ss_pred             CceEEEEEecCCCcEEEEEeCCce------EEEEEcCCCC-Ccceee--cccccCC-CC-----CCCCceeEEEecCCCe
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGV------IRLWQLQSRG-SGASLL--STTDCLS-PK-----HRRWPEDIAWHPQGNS  288 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~------v~iw~~~~~~-~~~~~~--~~~~~~~-~~-----h~~~V~~~~~~~~~~~  288 (540)
                      +.+..|.+.|+++. +++-+.+|.      +...++.... ....+.  ....... .|     -.-..-+|++.++|.+
T Consensus        20 GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             CcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            67899999975454 555566666      5555544310 111110  0000000 01     0113457888888888


Q ss_pred             EEEEeecCCCC------CeEEEEecCCCCCceeEEeecC---------CCCcccceeEEEEeCCCCCEEEEEec-----C
Q 009203          289 LFSAHTADSGD------SQISVLNLNKTKGRACVTFLDD---------KPHVKGIINSIIFLPWENPCFATGGS-----D  348 (540)
Q Consensus       289 l~s~~~~~~~d------~~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~p~~~~~l~s~~~-----d  348 (540)
                      +++.    -.+      ..|..++.. +.....+..-..         ........-+|+++| ++..|+++..     |
T Consensus        99 ~is~----E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~l~~d  172 (326)
T PF13449_consen   99 WISS----EGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESPLKQD  172 (326)
T ss_pred             EEEe----CCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECccccCC
Confidence            8886    566      788888876 433222211111         011234588999999 8886665532     2


Q ss_pred             C---------cEEEE--ecCCCCCccccceeeccc-----CCcceeEEEeccCCCEEEE
Q 009203          349 H---------AVVLW--SERDAEDSWKPKALHRNL-----HSSAVMGVAGMQQKQIVLS  391 (540)
Q Consensus       349 g---------~i~iw--d~~~~~~~~~~~~~~~~~-----~~~~v~~l~~s~~~~~l~~  391 (540)
                      +         .++|+  |..+..............     ....|..+.+.+++++|+.
T Consensus       173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             CcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            2         14554  444311111111121111     3567888888888886664

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.35  E-value=6.4  Score=38.59  Aligned_cols=80  Identities=13%  Similarity=0.111  Sum_probs=51.8

Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccEEEEee-cCC--------------CCCceEEEE
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKCMSVLP-NPC--------------DFNLFMVQT  435 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~-~~~--------------~~~~~~l~~  435 (540)
                      ....+.+++.+|++++.++...-|.|.++|+.++..+...+.-  ..+.-+.. ...              .....+++-
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            3456788999999999999888899999999988776543321  11111110 000              111234455


Q ss_pred             EcCCCeEEEEECCCCcc
Q 009203          436 GTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       436 ~~~dg~v~i~d~~~~~~  452 (540)
                      .-.-|.|.||.++++..
T Consensus       386 aprRg~lEvW~~~~g~R  402 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPR  402 (415)
T ss_pred             eccCCeEEEEecCCCCE
Confidence            66788999999987654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.30  E-value=16  Score=40.58  Aligned_cols=145  Identities=10%  Similarity=0.121  Sum_probs=76.9

Q ss_pred             eCCCeEEEEECCCCCeeee-eccCccEEEEee-cCCC----CCceEEEEEcCCCeEEEEECCCCcc--eeeeeccccccC
Q 009203          393 GADKRIIGFDAGVGRADFK-HQIESKCMSVLP-NPCD----FNLFMVQTGTPGRQLRLYDIRLRQT--EIHAFGWKQESS  464 (540)
Q Consensus       393 ~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~-~~~~----~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~~  464 (540)
                      +-|..+.+|+..++..... ......+..+.. .|.-    +..++++.-+.--.|.++-+.-.+.  ....+.-.-...
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            4577899999998554333 223333443322 1110    0112232222333455544322111  000000000112


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc--CCC---Cc-----------------cccccc-ccccceeEEEEcC
Q 009203          465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIR--YSA---NK-----------------PSQSIR-AHQKRVFKAVWHY  521 (540)
Q Consensus       465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~--~~~---~~-----------------~~~~~~-~h~~~i~~l~~s~  521 (540)
                      .....|+++....+|+.+++|- ||.  +|.+.  ..+   ++                 .+..+. .+..+|..+....
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            2245688999888898888774 554  44432  100   00                 011223 5677999999988


Q ss_pred             CCCEEEEEEcCCcEEEEeC
Q 009203          522 SHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       522 ~~~~l~s~~~dg~v~iw~l  540 (540)
                      .-..+.+-+.-|+|.+|++
T Consensus       253 SR~IlY~lsek~~v~~Y~i  271 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDI  271 (1311)
T ss_pred             ccceeeeeccCceEEEEEc
Confidence            8889999999999999986

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.86  E-value=5.1  Score=34.14  Aligned_cols=32  Identities=16%  Similarity=0.079  Sum_probs=26.0

Q ss_pred             CcceeEEEeccCC------CEEEEEeCCCeEEEEECCC
Q 009203          374 SSAVMGVAGMQQK------QIVLSAGADKRIIGFDAGV  405 (540)
Q Consensus       374 ~~~v~~l~~s~~~------~~l~~~~~dg~i~iwd~~~  405 (540)
                      ...+.+++|||.|      -+|++.+.++.|.+|....
T Consensus        85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            3479999999954      4788889999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=87.50  E-value=4.1  Score=27.73  Aligned_cols=51  Identities=18%  Similarity=0.258  Sum_probs=41.8

Q ss_pred             ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203           24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARL   74 (540)
Q Consensus        24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~   74 (540)
                      +.+..++.|+.+-++...|...|+.+.+.++..-..+..+.+.+..++..+
T Consensus         4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam   54 (65)
T TIGR02449         4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM   54 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999888888888877777776666554

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.38  E-value=48  Score=36.05  Aligned_cols=120  Identities=13%  Similarity=0.135  Sum_probs=74.2

Q ss_pred             CCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCC--ceeEEeecCC-------CCcccceeEEEEeCCCCCEEEE
Q 009203          275 RWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKG--RACVTFLDDK-------PHVKGIINSIIFLPWENPCFAT  344 (540)
Q Consensus       275 ~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~-------~~~~~~v~~~~~~p~~~~~l~s  344 (540)
                      .+..+++|+|. ...||+.    ...|...||++.....  ..........       +...+....+.|.+ +.+.|+.
T Consensus       146 ~~~aDv~FnP~~~~q~AiV----D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv  220 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIV----DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLV  220 (765)
T ss_pred             CccceEEeccCccceEEEE----eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEE
Confidence            34678999984 4588888    9999999999922111  0111111110       00112345788988 7677777


Q ss_pred             EecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC--CCEEEEEeCCCeEEEEECCC
Q 009203          345 GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ--KQIVLSAGADKRIIGFDAGV  405 (540)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~  405 (540)
                      ++. ..+.++|+.+....   ..+........|.++.-++.  +..++..+  ..|...|+..
T Consensus       221 ~~r-~~l~~~d~~~~~~~---~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  221 CNR-SKLMLIDFESNWQT---EYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             EcC-CceEEEECCCCCcc---chhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            665 67899999987641   11333345677899988886  34444433  4688888876

These proteins are found in fungi.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=87.37  E-value=31  Score=33.79  Aligned_cols=40  Identities=3%  Similarity=-0.021  Sum_probs=19.8

Q ss_pred             EEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC
Q 009203          491 IHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       491 i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                      +.+||..+.....+..+..-.....+  ..-++.+++.||..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~~a--v~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYGVS--VSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCCCccceEE--EEeCCEEEEEcCCC
Confidence            45788886433333333221111122  33367788888754

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.34  E-value=29  Score=33.87  Aligned_cols=106  Identities=13%  Similarity=0.095  Sum_probs=64.1

Q ss_pred             EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCcc--E
Q 009203          341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESK--C  418 (540)
Q Consensus       341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~  418 (540)
                      .+..+..+|.|.-.|..++..+|......   ....+.+-.+..+|+ ++.++.+|.++.+|.++|+.+........  .
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~  145 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY  145 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence            45555778888888888887655444331   011122222222555 77788899999999998998877666651  1


Q ss_pred             EEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      .......+    ..+..++.++.+...|..++....
T Consensus       146 ~~~~v~~~----~~v~~~s~~g~~~al~~~tG~~~W  177 (370)
T COG1520         146 ASPPVVGD----GTVYVGTDDGHLYALNADTGTLKW  177 (370)
T ss_pred             ecCcEEcC----cEEEEecCCCeEEEEEccCCcEEE
Confidence            11111112    244555577888888888776533

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.12  E-value=16  Score=36.08  Aligned_cols=142  Identities=10%  Similarity=0.095  Sum_probs=79.4

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC--------eEEEEeecCCCCCeEEEEecCC
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN--------SLFSAHTADSGDSQISVLNLNK  309 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~--------~l~s~~~~~~~d~~i~vwd~~~  309 (540)
                      ++..|+....+.--|++.|+.+.....        |.+ | -+.|.|+.+        .|+..     .+..|.-.|.+.
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~--------~dd-v-vVqy~p~~kf~qmt~eqtlvGl-----S~~svFrIDPR~  546 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDL--------KDD-V-VVQYNPYFKFQQMTDEQTLVGL-----SDYSVFRIDPRA  546 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeec--------CCc-c-eeecCCchhHHhcCccceEEee-----cccceEEecccc
Confidence            334455555566667777666555532        222 2 356666432        34433     444454455553


Q ss_pred             CCCceeEEeecCCC-CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCE
Q 009203          310 TKGRACVTFLDDKP-HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQI  388 (540)
Q Consensus       310 ~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  388 (540)
                      ..  ..+...+.+. .......+..-.  ...+++.|+..|.|++||--....   ...+  .+-...|..+..+.+|.+
T Consensus       547 ~g--NKi~v~esKdY~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rA---Ktal--P~lG~aIk~idvta~Gk~  617 (776)
T COG5167         547 RG--NKIKVVESKDYKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRA---KTAL--PGLGDAIKHIDVTANGKH  617 (776)
T ss_pred             cC--Cceeeeeehhccccccccccccc--cCceEEEecCCCceeeehhhcchh---hhcC--cccccceeeeEeecCCcE
Confidence            32  1122222111 011222233222  456899999999999999765442   1122  346678999999999999


Q ss_pred             EEEEeCCCeEEEEECC
Q 009203          389 VLSAGADKRIIGFDAG  404 (540)
Q Consensus       389 l~~~~~dg~i~iwd~~  404 (540)
                      +++.+.. .+.+-|++
T Consensus       618 ilaTCk~-yllL~d~~  632 (776)
T COG5167         618 ILATCKN-YLLLTDVP  632 (776)
T ss_pred             EEEeecc-eEEEEecc
Confidence            8877664 77777775

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.07  E-value=7.2  Score=43.06  Aligned_cols=34  Identities=12%  Similarity=0.062  Sum_probs=30.3

Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .+..+|..++.+...+.+.+-+..|.|.+||+..
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            4567899999988888999999999999999986

>PRK10115 protease 2; Provisional

Probab=86.90  E-value=47  Score=35.51  Aligned_cols=246  Identities=9%  Similarity=0.040  Sum_probs=114.8

Q ss_pred             CceEEEEEecCCCcEEEEEeC-----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC--
Q 009203          224 RKLRSLSLNPVNEQLFVTSAL-----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD--  296 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~--  296 (540)
                      -.+..+.|+|| +++|+.+..     ...+++-|+.++..+.....       +   .-..++|.+|++.|+......  
T Consensus       127 ~~l~~~~~Spd-g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-------~---~~~~~~w~~D~~~~~y~~~~~~~  195 (686)
T PRK10115        127 YTLGGMAITPD-NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-------N---VEPSFVWANDSWTFYYVRKHPVT  195 (686)
T ss_pred             EEEeEEEECCC-CCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-------C---cceEEEEeeCCCEEEEEEecCCC
Confidence            34677889996 777776532     23588888877653222211       1   114599999998776653211  


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---CCcEEEEecCCCCCccccceeecccC
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---DHAVVLWSERDAEDSWKPKALHRNLH  373 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~  373 (540)
                      .....|..+++.++.... ...+....   ....-..+.+.++.+++..+.   ++.+.+|+.......  ...+... .
T Consensus       196 ~~~~~v~~h~lgt~~~~d-~lv~~e~~---~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~  268 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQD-ELVYEEKD---DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE--PFVFLPR-R  268 (686)
T ss_pred             CCCCEEEEEECCCChhHC-eEEEeeCC---CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC--ceEEEEC-C
Confidence            133578888888773211 22233211   122212233336666655443   356888885432111  1111111 1


Q ss_pred             CcceeEEEeccCCCEEEEEeCC----CeEEEEECCC-CCe--eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203          374 SSAVMGVAGMQQKQIVLSAGAD----KRIIGFDAGV-GRA--DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD  446 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d  446 (540)
                      .+....+. +. +..++..+..    ..|...++.. ++.  +........+..+.+..+    .++++...+|.-+++-
T Consensus       269 ~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----~l~~~~~~~g~~~l~~  342 (686)
T PRK10115        269 KDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD----WLVVEERQRGLTSLRQ  342 (686)
T ss_pred             CCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC----EEEEEEEeCCEEEEEE
Confidence            12222222 22 2333333332    2344445542 221  222222335556666533    4677777777755554


Q ss_pred             CCCCcceeeeeccccccCccccCeEEEEEc--CCCC-EEEEEe---CCCcEEEEeccC
Q 009203          447 IRLRQTEIHAFGWKQESSESQSALINQSWS--PDGL-YITSGS---ADPVIHLFDIRY  498 (540)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~g~-~l~sg~---~dg~i~iwd~~~  498 (540)
                      +.........+    .+ .....+..+.++  +++. ++++.+   .-+.++.||+.+
T Consensus       343 ~~~~~~~~~~l----~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~  395 (686)
T PRK10115        343 INRKTREVIGI----AF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT  395 (686)
T ss_pred             EcCCCCceEEe----cC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence            43221111111    11 111123333344  3443 444333   246788888775

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.74  E-value=5  Score=38.77  Aligned_cols=167  Identities=14%  Similarity=0.150  Sum_probs=91.1

Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC-ccccee-EEEEeCCCCCEEEEEecCCcE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH-VKGIIN-SIIFLPWENPCFATGGSDHAV  351 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~p~~~~~l~s~~~dg~i  351 (540)
                      ...|..+-..|||+.|..-    + ...+.++++.+..- +..+..+..++ ....|+ .+.... .+.-+..++.||-|
T Consensus       220 ~~~v~qllL~Pdg~~LYv~----~-g~~~~v~~L~~r~l-~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~v  292 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVR----T-GSELVVALLDKRSL-QIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLV  292 (733)
T ss_pred             ccchHhhEECCCCCEEEEe----c-CCeEEEEeeccccc-chhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCce
Confidence            3557788899999999886    3 37888998875421 11122221111 011122 222222 55667788889988


Q ss_pred             EEE-ecCCCCCccccceeec-ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCC
Q 009203          352 VLW-SERDAEDSWKPKALHR-NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFN  429 (540)
Q Consensus       352 ~iw-d~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (540)
                      .-| |++.+.. .....+.. .-....+.-+.-..+.+-+++-+..|++.++.....+.+.....-....-+.++|.+  
T Consensus       293 sQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~--  369 (733)
T COG4590         293 SQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQ--  369 (733)
T ss_pred             eeeeeeecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCccc--
Confidence            776 5554432 00111110 001122222222224456777788888888876655555443333344556677765  


Q ss_pred             ceEEEEEcCCCeEEEEECCCCcc
Q 009203          430 LFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       430 ~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                       .++++ -..|.++++.+.+...
T Consensus       370 -~~Ll~-e~~gki~~~~l~Nr~P  390 (733)
T COG4590         370 -AYLLS-EDQGKIRLAQLENRNP  390 (733)
T ss_pred             -chhee-ecCCceEEEEecCCCC
Confidence             34554 3457899998886554

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.60  E-value=8.5  Score=26.59  Aligned_cols=54  Identities=11%  Similarity=0.154  Sum_probs=42.9

Q ss_pred             ChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhccC
Q 009203           24 SKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQ   77 (540)
Q Consensus        24 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~   77 (540)
                      +.+...+.|.-.++..++-|+.|...+++.+..++.++.+++-+-.++..++..
T Consensus         5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~   58 (72)
T COG2900           5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS   58 (72)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            445677788888888888889998888888888888888888877777766544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.56  E-value=21  Score=31.17  Aligned_cols=51  Identities=14%  Similarity=0.273  Sum_probs=37.0

Q ss_pred             CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203          287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS  347 (540)
Q Consensus       287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  347 (540)
                      +.|+.+    ...+.|.+|++... .......+..    -+.|..+.++. .|++|+|--.
T Consensus        29 d~Lfva----~~g~~Vev~~l~~~-~~~~~~~F~T----v~~V~~l~y~~-~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVA----ASGCKVEVYDLEQE-ECPLLCTFST----VGRVLQLVYSE-AGDYLVTLEE   79 (215)
T ss_pred             ceEEEE----cCCCEEEEEEcccC-CCceeEEEcc----hhheeEEEecc-ccceEEEEEe
Confidence            556555    56788999999833 3345555553    46799999999 9999998643

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=86.49  E-value=54  Score=35.78  Aligned_cols=292  Identities=9%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             cCceEEEEEecCC-----CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC---------e
Q 009203          223 KRKLRSLSLNPVN-----EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN---------S  288 (540)
Q Consensus       223 ~~~V~~l~~spd~-----~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~---------~  288 (540)
                      +..|.|+++.++.     .++++.|+.|+.+++..+....++..+..      .+-..++.++.+-+...         +
T Consensus       582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~------q~l~~~~~s~~iv~~~~~~~~~~~~L~  655 (1205)
T KOG1898|consen  582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSV------QGLSSPPESLCIVEMEATGGTDVAQLY  655 (1205)
T ss_pred             ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccc------cccCCCccceEEEEecccCCccceeEE


Q ss_pred             EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---------------------
Q 009203          289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---------------------  347 (540)
Q Consensus       289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---------------------  347 (540)
                      |.+|    -.+|.+.-+-+++-.+.-....-...+........+...- ....|+..+.                     
T Consensus       656 l~~G----L~NGvllR~~id~v~G~l~d~rtR~lG~~pvkLf~~~~~~-~s~vL~lSsr~wl~y~~~~~~h~t~Isy~~l  730 (1205)
T KOG1898|consen  656 LLIG----LRNGVLLRFVIDTVTGQLLDIRTRFLGLRPVKLFPISMRG-QSDVLALSSRPWLLYTYQQEFHLTPISYSTL  730 (1205)
T ss_pred             EEec----ccccEEEEEEecccccceeeeheeeeccccceEEEEeecC-cceeEEecCChhhhhhhcceeeeecccccch


Q ss_pred             -------------------CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe---------------
Q 009203          348 -------------------DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG---------------  393 (540)
Q Consensus       348 -------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~---------------  393 (540)
                                         ..++++.-+...........+.   +......+..+|....++.+.               
T Consensus       731 ~~as~~~S~qcpeGiv~i~~n~l~i~~~~~~g~~~n~~~~~---l~~tprkvv~h~es~lLii~~td~~~~~~~~a~~~~  807 (1205)
T KOG1898|consen  731 EHASPFCSEQCPEGIVAISKNTLRIIALDKLGKVLNVDGFP---LAYTPRKVVIHPESGLLIIGRTDHNATLTKDARKNQ  807 (1205)
T ss_pred             hccccccccCCCcchhhhhhhhhheeeehhhcccccccccc---cccCcceEEEecCCCeEEEEEecccchhhHHHhhhh


Q ss_pred             --------------------------------------CCCe-----EEEEECCCCCeeeeeccCcc-----EEEEeecC
Q 009203          394 --------------------------------------ADKR-----IIGFDAGVGRADFKHQIESK-----CMSVLPNP  425 (540)
Q Consensus       394 --------------------------------------~dg~-----i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~  425 (540)
                                                            ..|.     |+++|..+++.+.....+..     +.+..|+.
T Consensus       808 ~~~g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~~~p~a~~~w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~  887 (1205)
T KOG1898|consen  808 MEAGGVLESGEEKEDEMGGEMEIIGREEVLPENVYGSPRAGNGWVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSS  887 (1205)
T ss_pred             hhcccccccccccchhhccchhhhccccccccccccCcccccCccceEEEEcCCCCceEEEEeecCCcchhheeeeeecc


Q ss_pred             CCCCceEEEEEcC-----------CCeEEEEECCCCcceeeeeccccccCccccCeEEE--EEcCCCCEEEEEeCCCcEE
Q 009203          426 CDFNLFMVQTGTP-----------GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ--SWSPDGLYITSGSADPVIH  492 (540)
Q Consensus       426 ~~~~~~~l~~~~~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~g~~l~sg~~dg~i~  492 (540)
                      .+.. .++++|..           +|.++.|++-.....+..+        |...+.++  +..|-+.++.+| ....++
T Consensus       888 ~~~~-~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell--------h~T~~~~~v~Ai~~f~~~~Lag-vG~~l~  957 (1205)
T KOG1898|consen  888 SEYQ-PFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL--------HKTEIPGPVGAICPFQGRVLAG-VGRFLR  957 (1205)
T ss_pred             CCCc-eEEEEEeeccccccccccCCCceEEEEEEecCceeeee--------eccCCCccceEEeccCCEEEEe-cccEEE


Q ss_pred             EEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          493 LFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       493 iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +||+.....-....++.-...|+.+.|  .+..++.|..--.|.++.+
T Consensus       958 ~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y 1003 (1205)
T KOG1898|consen  958 LYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRY 1003 (1205)
T ss_pred             EeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEE

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=86.32  E-value=25  Score=33.60  Aligned_cols=156  Identities=18%  Similarity=0.221  Sum_probs=76.2

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCc--eeEEeecCCCCcccceeEEEEeCCCCCEEEE--------
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGR--ACVTFLDDKPHVKGIINSIIFLPWENPCFAT--------  344 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s--------  344 (540)
                      +....++|...|.-|+.+      |...-+|.+.-....  .......+.+  -...+.+...+ ++....|        
T Consensus       115 GRPLGl~f~~~ggdL~Va------DAYlGL~~V~p~g~~a~~l~~~~~G~~--~kf~N~ldI~~-~g~vyFTDSSsk~~~  185 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVA------DAYLGLLKVGPEGGLAELLADEAEGKP--FKFLNDLDIDP-EGVVYFTDSSSKYDR  185 (376)
T ss_pred             CCcceEEeccCCCeEEEE------ecceeeEEECCCCCcceeccccccCee--eeecCceeEcC-CCeEEEeccccccch
Confidence            446789999988667776      555555555422111  1111111110  01133444444 4433333        


Q ss_pred             ---------EecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC--CeEEEEECCC--CC-eee
Q 009203          345 ---------GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD--KRIIGFDAGV--GR-ADF  410 (540)
Q Consensus       345 ---------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d--g~i~iwd~~~--~~-~~~  410 (540)
                               +..+|.+.-||..+...    ..+..  .-.-.+.++.|||+.+++.+-..  ...+.|=-..  |. .++
T Consensus       186 rd~~~a~l~g~~~GRl~~YD~~tK~~----~VLld--~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvF  259 (376)
T KOG1520|consen  186 RDFVFAALEGDPTGRLFRYDPSTKVT----KVLLD--GLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVF  259 (376)
T ss_pred             hheEEeeecCCCccceEEecCcccch----hhhhh--cccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhH
Confidence                     33467777788777652    23321  33456789999999998876442  2334443221  11 122


Q ss_pred             eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203          411 KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL  449 (540)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  449 (540)
                      .....+..-.+..++.+.  .+++..+.-..  +|++-.
T Consensus       260 a~~LPG~PDNIR~~~~G~--fWVal~~~~~~--~~~~~~  294 (376)
T KOG1520|consen  260 AEGLPGYPDNIRRDSTGH--FWVALHSKRST--LWRLLM  294 (376)
T ss_pred             hhcCCCCCcceeECCCCC--EEEEEecccch--HHHhhh
Confidence            233444444555555442  34444333222  555543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.09  E-value=34  Score=33.11  Aligned_cols=195  Identities=12%  Similarity=0.111  Sum_probs=103.0

Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC---CCCCE--EEEEec-C---CcEEEEe
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP---WENPC--FATGGS-D---HAVVLWS  355 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~~--l~s~~~-d---g~i~iwd  355 (540)
                      ...+|+..    ..++-+.+||+..    +.++.+..     +.++.+..-.   .++..  |+.++. +   .+|++|.
T Consensus        67 ~kSlIigT----dK~~GL~VYdL~G----k~lq~~~~-----Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~  133 (381)
T PF02333_consen   67 AKSLIIGT----DKKGGLYVYDLDG----KELQSLPV-----GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR  133 (381)
T ss_dssp             GG-EEEEE----ETTTEEEEEETTS-----EEEEE-S-----S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred             ccceEEEE----eCCCCEEEEcCCC----cEEEeecC-----CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence            34456655    6788899999983    34555532     3344444321   02222  344442 2   4699997


Q ss_pred             cCCCCCccccceeecc-----cCCcceeEEEe--cc-CCC-EEEEEeCCCeEEEEECC---CCC----eeeeeccCccEE
Q 009203          356 ERDAEDSWKPKALHRN-----LHSSAVMGVAG--MQ-QKQ-IVLSAGADKRIIGFDAG---VGR----ADFKHQIESKCM  419 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~-----~~~~~v~~l~~--s~-~~~-~l~~~~~dg~i~iwd~~---~~~----~~~~~~~~~~~~  419 (540)
                      +......  +..+...     .....++.+|+  ++ +|. +++....+|.+..|-+.   .+.    .++.+...+.+-
T Consensus       134 id~~~g~--L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~E  211 (381)
T PF02333_consen  134 IDPDTGE--LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPE  211 (381)
T ss_dssp             EETTTTE--EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EE
T ss_pred             ecCCCCc--ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcce
Confidence            7632110  1111110     12234677776  33 354 55667788988777664   332    355667777777


Q ss_pred             EEeecCCCCCceEEEEEcCCCeEEEEECCCCcce-eeeeccccccCccccCeEEEEEc--CCC-CE-EEEEeCCCcEEEE
Q 009203          420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE-IHAFGWKQESSESQSALINQSWS--PDG-LY-ITSGSADPVIHLF  494 (540)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s--p~g-~~-l~sg~~dg~i~iw  494 (540)
                      .+..+...   .+|+.+-.+.-|.-|+..-.... ...+... .-......|-.|++-  .+| .| |++.-.+++..||
T Consensus       212 GCVVDDe~---g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy  287 (381)
T PF02333_consen  212 GCVVDDET---GRLYVGEEDVGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVY  287 (381)
T ss_dssp             EEEEETTT---TEEEEEETTTEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEE
T ss_pred             EEEEeccc---CCEEEecCccEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEE
Confidence            77776654   48888999999999988733211 1111000 112234567777763  343 34 4455567889999


Q ss_pred             eccC
Q 009203          495 DIRY  498 (540)
Q Consensus       495 d~~~  498 (540)
                      +...
T Consensus       288 ~r~~  291 (381)
T PF02333_consen  288 DREG  291 (381)
T ss_dssp             ESST
T ss_pred             ecCC
Confidence            9885

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=85.89  E-value=34  Score=32.83  Aligned_cols=152  Identities=9%  Similarity=0.017  Sum_probs=79.6

Q ss_pred             CcceeEEEeccCCCEEEEEeCCCeEEE-EECCCCCeee--eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKRIIG-FDAGVGRADF--KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      ...+.++.+.+++.+++++ ..|.+.. +|- .++.-.  .......+.++.+.+++   ..++++ ..|.+.+=..+.+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g---~~~~vg-~~G~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDG---NLWMLA-RGGQIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCC---CEEEEe-cCCEEEEccCCCC
Confidence            4578899999987766554 4455443 221 122211  12234566777777766   345544 4565543223322


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---ccccceeEEEEcCCCCEEE
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AHQKRVFKAVWHYSHPLLI  527 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~i~~l~~s~~~~~l~  527 (540)
                      .. ......  ........+.++.+.+++..+++| .+|.|. ...+.  ++......   .-....+.+.|..++..++
T Consensus       246 ~s-W~~~~~--~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~--G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (334)
T PRK13684        246 ES-WSKPII--PEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG--GKTWEKDPVGEEVPSNFYKIVFLDPEKGFV  318 (334)
T ss_pred             Cc-cccccC--CccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC--CCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence            21 110000  000112357889999988766655 567554 33443  33333322   1123577888877766655


Q ss_pred             EEEcCCcEEEEe
Q 009203          528 SISSDLNIGLHK  539 (540)
Q Consensus       528 s~~~dg~v~iw~  539 (540)
                       .+..|.|..|+
T Consensus       319 -~G~~G~il~~~  329 (334)
T PRK13684        319 -LGQRGVLLRYV  329 (334)
T ss_pred             -ECCCceEEEec
Confidence             45678887664

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.82  E-value=23  Score=30.94  Aligned_cols=153  Identities=12%  Similarity=0.072  Sum_probs=79.7

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC---eEEEE-ecCCC--
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS---QISVL-NLNKT--  310 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~---~i~vw-d~~~~--  310 (540)
                      ..|+.+.....|.+|++....+  .+...+.     --+.|..+.++..|++|++-=.. ....   .+++| +++..  
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~--~~~~~F~-----Tv~~V~~l~y~~~GDYlvTlE~k-~~~~~~~fvR~Y~NWr~~~~  100 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEEC--PLLCTFS-----TVGRVLQLVYSEAGDYLVTLEEK-NKRSPVDFVRAYFNWRSQKE  100 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCC--ceeEEEc-----chhheeEEEeccccceEEEEEee-cCCccceEEEEEEEhhhhcc
Confidence            3444435567899999984432  2222222     22668999999999999996111 1222   55664 33221  


Q ss_pred             -CCceeEEeecCCC------------------CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-ccccceeec
Q 009203          311 -KGRACVTFLDDKP------------------HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED-SWKPKALHR  370 (540)
Q Consensus       311 -~~~~~~~~~~~~~------------------~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~  370 (540)
                       ...-.++.. ++.                  .-...+.+++..|.+|++++.+  ++.+.+|.+..... ..+...+..
T Consensus       101 ~~~~v~vRia-G~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDF  177 (215)
T PF14761_consen  101 ENSPVRVRIA-GHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDF  177 (215)
T ss_pred             cCCcEEEEEc-ccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEec
Confidence             111121111 100                  1134578899999777766643  46788887764432 111111111


Q ss_pred             -----ccCC-cceeEEEeccCCCEEEEEeCCCeEEEEEC
Q 009203          371 -----NLHS-SAVMGVAGMQQKQIVLSAGADKRIIGFDA  403 (540)
Q Consensus       371 -----~~~~-~~v~~l~~s~~~~~l~~~~~dg~i~iwd~  403 (540)
                           ..|. -.+..+++.  +.+++..+.. .++++.+
T Consensus       178 e~~l~~~~~~~~p~~v~ic--~~yiA~~s~~-ev~Vlkl  213 (215)
T PF14761_consen  178 ERSLIDHIDNFKPTQVAIC--EGYIAVMSDL-EVLVLKL  213 (215)
T ss_pred             hhhhhheecCceEEEEEEE--eeEEEEecCC-EEEEEEE
Confidence                 0111 224555554  5677766543 5666544

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.47  E-value=10  Score=37.58  Aligned_cols=78  Identities=13%  Similarity=-0.008  Sum_probs=54.0

Q ss_pred             CcceeEEEeccCCCEEEEEeCCCeEEEEEC---------CCCCe------------eeeeccCccEEEEeecCCCCCceE
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDA---------GVGRA------------DFKHQIESKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~---------~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  432 (540)
                      .-.|..+..++.|..++..+.+|.+.++=.         ..|+.            ++.....-......|+|+.-....
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            345777888999999999999997666542         22322            122222345567889998744457


Q ss_pred             EEEEcCCCeEEEEECCCCc
Q 009203          433 VQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~  451 (540)
                      |+.-+.|+.|++||+....
T Consensus       183 L~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEEEecCcEEEEEecCCcc
Confidence            7788889999999998644

>PF14193 DUF4315: Domain of unknown function (DUF4315)

Probab=85.46  E-value=2.1  Score=30.92  Aligned_cols=33  Identities=18%  Similarity=0.414  Sum_probs=28.6

Q ss_pred             HhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhH
Q 009203           36 IEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQ   68 (540)
Q Consensus        36 i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~   68 (540)
                      |++...+|+..+.+++.+|.+|.+++.++.+++
T Consensus         3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E   35 (83)
T PF14193_consen    3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAE   35 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999999999877765

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.39  E-value=35  Score=32.53  Aligned_cols=67  Identities=13%  Similarity=0.117  Sum_probs=35.7

Q ss_pred             CCCEEEEEecC-----CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC----eEEEEECCCCCe
Q 009203          338 ENPCFATGGSD-----HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK----RIIGFDAGVGRA  408 (540)
Q Consensus       338 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg----~i~iwd~~~~~~  408 (540)
                      ++.+++.|+..     ..+..||+.+.+-    ..+............+..-++++.+.|+.++    .+.+||+.+.+-
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W----~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEW----FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCe----eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            56777777642     3578888887652    1111000111111222233567777777654    356888887553

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2006 consensus WD40 repeat protein [General function prediction only]

Probab=85.36  E-value=6.9  Score=41.94  Aligned_cols=77  Identities=14%  Similarity=0.168  Sum_probs=54.5

Q ss_pred             eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203          226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL  305 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw  305 (540)
                      -.|..... ...++++|..-|.+.+++.........+.....   .++..++..+.|.|++..++.+    -..|...+|
T Consensus       151 Avc~SV~~-e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~---~~~ti~~~~~~~~p~~~~~av~----~~~g~ls~w  222 (1023)
T KOG2006|consen  151 AVCCSVNH-EFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDD---DTLTVPDNNSSWRPDQNGFAVT----WEKGFLAFW  222 (1023)
T ss_pred             ceeeeccc-hhhhheecccccceeehhhhhhccceeeecccC---ccccccccccCcCCccceeeee----ecccceEEe
Confidence            34555555 488999999999999998865433222221111   3455578889999999999998    788889999


Q ss_pred             ecCCC
Q 009203          306 NLNKT  310 (540)
Q Consensus       306 d~~~~  310 (540)
                      ....+
T Consensus       223 S~~g~  227 (1023)
T KOG2006|consen  223 SNQGN  227 (1023)
T ss_pred             ccccc
Confidence            87654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=85.10  E-value=39  Score=32.91  Aligned_cols=144  Identities=13%  Similarity=0.110  Sum_probs=75.4

Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      ..+|.|.-.|..++..........    ....+.+-.+.. +|+ ++.++.++.++.+|..+++..|....-.   . ..
T Consensus        75 ~~~G~i~A~d~~~g~~~W~~~~~~----~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~-~~  144 (370)
T COG1520          75 TRDGNIFALNPDTGLVKWSYPLLG----AVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S-PY  144 (370)
T ss_pred             cCCCcEEEEeCCCCcEEecccCcC----cceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCC---C-eE
Confidence            577777777777763211111110    011222223332 454 7777888889999998888655444321   0 11


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCcc-EEEEeecCCCCCceEEEEEcC--CCeEEEEECCCCcc
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESK-CMSVLPNPCDFNLFMVQTGTP--GRQLRLYDIRLRQT  452 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~--dg~v~i~d~~~~~~  452 (540)
                      +..-... ....++.++.++.+...|..+|........... -......|.... -.+..+..  ++.+.-+|..++..
T Consensus       145 ~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~vy~~~~~~~~~~~a~~~~~G~~  221 (370)
T COG1520         145 YASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS-GTVYVGSDGYDGILYALNAEDGTL  221 (370)
T ss_pred             EecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeec-ceEEEecCCCcceEEEEEccCCcE
Confidence            1111122 233444455789999999999988766544332 112222221111 24455544  56677777766654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.07  E-value=12  Score=37.19  Aligned_cols=72  Identities=19%  Similarity=0.236  Sum_probs=47.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEe-----ccC--CCCccccccc-----------ccccceeEEEEcCCC---CEEE
Q 009203          469 ALINQSWSPDGLYITSGSADPVIHLFD-----IRY--SANKPSQSIR-----------AHQKRVFKAVWHYSH---PLLI  527 (540)
Q Consensus       469 ~v~~~~~sp~g~~l~sg~~dg~i~iwd-----~~~--~~~~~~~~~~-----------~h~~~i~~l~~s~~~---~~l~  527 (540)
                      .|..+..++.|..++..|.+|.+.++=     -+.  ..++++...+           ...-.+..++|+|+.   ..|+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            577888999999999999999654432     111  0122211111           111256788999986   5777


Q ss_pred             EEEcCCcEEEEeC
Q 009203          528 SISSDLNIGLHKI  540 (540)
Q Consensus       528 s~~~dg~v~iw~l  540 (540)
                      .-+.|..||||++
T Consensus       185 iL~sdnviRiy~l  197 (741)
T KOG4460|consen  185 LLTSDNVIRIYSL  197 (741)
T ss_pred             EEecCcEEEEEec
Confidence            7888999999985

>PRK00846 hypothetical protein; Provisional

Probab=84.42  E-value=4.1  Score=28.90  Aligned_cols=37  Identities=8%  Similarity=0.043  Sum_probs=18.4

Q ss_pred             HHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHH
Q 009203           34 ALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSK   70 (540)
Q Consensus        34 ~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~   70 (540)
                      ..|+...+.+-+.++.|..++.++..+..++.+.+..
T Consensus        27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s   63 (77)
T PRK00846         27 QALTELSEALADARLTGARNAELIRHLLEDLGKVRST   63 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4444444444444444444555555555555555533

>PRK14127 cell division protein GpsB; Provisional

Probab=84.31  E-value=1.7  Score=33.19  Aligned_cols=41  Identities=24%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             CCChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203           22 CNSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEK   62 (540)
Q Consensus        22 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~   62 (540)
                      .+|++++.+.+..-++...+|+..|+.++..++.++.+++.
T Consensus        25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~   65 (109)
T PRK14127         25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK   65 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666777777766666677777766665555555444444

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=84.02  E-value=49  Score=33.10  Aligned_cols=120  Identities=18%  Similarity=0.197  Sum_probs=63.8

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC------CeEEEEeecCC
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG------NSLFSAHTADS  297 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~------~~l~s~~~~~~  297 (540)
                      ..-+.|+|.|| +++|++--..|.|++++-..+... .+.................|+|+|+-      .+|+..++...
T Consensus        30 ~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        30 NKPWALLWGPD-NQLWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            45789999996 887777655699999976544311 11111111101125678999999874      35555432211


Q ss_pred             ------CCCeEEEEecCCC--CCceeEEeecCC---CCcccceeEEEEeCCCCCEEEEEecC
Q 009203          298 ------GDSQISVLNLNKT--KGRACVTFLDDK---PHVKGIINSIIFLPWENPCFATGGSD  348 (540)
Q Consensus       298 ------~d~~i~vwd~~~~--~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~~~d  348 (540)
                            ....|.-|.+...  ........+...   ..|.  -..|+|.| ++.++++.+..
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgP-DG~LYVs~GD~  166 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGP-DGKIYYTIGEQ  166 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECC-CCcEEEEECCC
Confidence                  1234555555421  111112222221   1232  34678999 88877765544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=83.93  E-value=0.8  Score=44.92  Aligned_cols=7  Identities=0%  Similarity=0.221  Sum_probs=3.2

Q ss_pred             eEEEEEC
Q 009203          441 QLRLYDI  447 (540)
Q Consensus       441 ~v~i~d~  447 (540)
                      .|.+|+-
T Consensus       680 vvVVWNs  686 (907)
T KOG2264|consen  680 VVVVWNS  686 (907)
T ss_pred             EEEEeCC
Confidence            3444543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.82  E-value=5.5  Score=24.08  Aligned_cols=32  Identities=3%  Similarity=0.032  Sum_probs=22.1

Q ss_pred             cCCCEEEEEe-CCCeEEEEECCCCCeeeeeccC
Q 009203          384 QQKQIVLSAG-ADKRIIGFDAGVGRADFKHQIE  415 (540)
Q Consensus       384 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~  415 (540)
                      |+++.|+++. .++.|.++|..+++.+......
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            4667666654 5789999999887765554443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.17  E-value=29  Score=38.70  Aligned_cols=32  Identities=16%  Similarity=0.394  Sum_probs=26.5

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCC
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS  255 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~  255 (540)
                      ......++|+|. ..++|.|...|.|+++....
T Consensus        35 ~~~~~~~afD~~-q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   35 PSTPSALAFDPT-QGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCcceeeccc-cceEEEEEecccEEEecccc
Confidence            345678889995 88999999999999997654

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=83.17  E-value=8.9  Score=29.91  Aligned_cols=34  Identities=18%  Similarity=0.285  Sum_probs=16.4

Q ss_pred             HhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHH
Q 009203           36 IEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQS   69 (540)
Q Consensus        36 i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~   69 (540)
                      -.+..+++++|+++++.++.++.....+++.+..
T Consensus        83 k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~  116 (135)
T KOG4196|consen   83 KAELQQQVEKLKEENSRLRRELDAYKSKYEALQN  116 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344445555555555555555555555444443

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.16  E-value=61  Score=36.28  Aligned_cols=30  Identities=17%  Similarity=0.269  Sum_probs=25.4

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecC
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN  308 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~  308 (540)
                      .....++|+|.-.+++.+    ..+|.|+++-..
T Consensus        36 ~~~~~~afD~~q~llai~----t~tg~i~~yg~~   65 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIG----TRTGAIKIYGQP   65 (993)
T ss_pred             CCCcceeeccccceEEEE----EecccEEEeccc
Confidence            345678999999999999    999999999655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	540
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.66
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.64
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.61
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.54
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.54
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.52
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.5
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.49
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.45
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.41
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.34
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.34
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.34
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.32
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.26
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.19
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.18
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.18
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.17
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.17
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.17
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.16
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.13
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.11
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.05
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.99
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.97
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.95
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.94
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.93
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.89
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.88
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.88
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.85
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.84
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.84
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.79
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.74
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.74
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.67
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.63
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.62
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.61
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.61
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.6
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.6
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.58
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.58
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.57
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.55
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.55
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.54
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.51
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.51
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.5
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.5
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.5
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.49
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.48
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.47
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.45
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.44
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.44
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.43
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.42
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.4
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.4
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.39
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.36
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.35
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.34
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.34
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.34
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.33
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.26
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.25
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.21
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.16
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.13
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.1
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.06
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.02
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.0
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.98
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.98
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.95
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.92
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.91
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.88
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.87
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.84
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.83
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.83
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.77
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.68
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.56
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.53
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.51
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.5
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.5
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.42
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.41
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.38
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.24
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.18
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.11
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.1
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.89
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.84
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.82
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.77
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.74
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.71
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.61
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.54
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.43
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.42
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.28
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.07
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.86
3ott_A	758	Two-component system sensor histidine kinase; beta	95.74
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.7
3ott_A	758	Two-component system sensor histidine kinase; beta	95.6
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.46
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.36
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.12
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.74
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.65
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.62
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.54
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.2
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	93.95
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.71
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.6
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	93.55
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.36
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	92.53
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	92.44
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.35
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	90.7
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	88.27
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	87.47
1g6u_A	48	Domain swapped dimer; designed three helix bundle,	87.21
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	86.55
3ljm_A	31	Coil Ser L9C; de novo design, three stranded coile	85.81
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	85.52
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	84.44
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	81.64
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	81.34
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	80.97

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.5e-46  Score=387.89  Aligned_cols=367  Identities=12%  Similarity=0.182  Sum_probs=288.8

Q ss_pred             CeeeecCCcceeeEEEEcccccccC--CCCccEEEEeecC---CCceEEecccccccceEEecCCC-------------C
Q 009203          147 SSTQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRG---TKRKFEQKEHRELIPLVRTSASP-------------A  208 (540)
Q Consensus       147 ~~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~d-------------~  208 (540)
                      ....+.+|...|.++++.|...+.+  +.|..+. +|...   ......+.+|...|..+++.++.             +
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~-lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR-IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEE-EeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            4456789999999999999987776  4455544 44421   22344567888888888876542             3


Q ss_pred             eEEEeccc---hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC
Q 009203          209 TIHCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ  285 (540)
Q Consensus       209 ~i~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  285 (540)
                      +|++|+..   ..+.+|.+.|++++|+|++..+|++|+.|++|++||....+....+        .+|...|.+++|+|+
T Consensus       130 ~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l--------~~H~~~V~~v~fspd  201 (611)
T 1nr0_A          130 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF--------GEHTKFVHSVRYNPD  201 (611)
T ss_dssp             EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE--------CCCSSCEEEEEECTT
T ss_pred             EEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee--------ccccCceEEEEECCC
Confidence            67888643   4588999999999999974457999999999999998876554444        589999999999999


Q ss_pred             CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecC----CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC
Q 009203          286 GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDD----KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED  361 (540)
Q Consensus       286 ~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  361 (540)
                      |++|+++    +.|++|++||+.++   .+...+..    ...|.+.|.+++|+| ++.+|++++.|++|++||+.++++
T Consensus       202 g~~las~----s~D~~i~lwd~~~g---~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          202 GSLFAST----GGDGTIVLYNGVDG---TKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKV  273 (611)
T ss_dssp             SSEEEEE----ETTSCEEEEETTTC---CEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CCEEEEE----ECCCcEEEEECCCC---cEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCce
Confidence            9999999    99999999999876   34444421    013778899999999 999999999999999999988754


Q ss_pred             ccccc--------------------------------------eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEEC
Q 009203          362 SWKPK--------------------------------------ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA  403 (540)
Q Consensus       362 ~~~~~--------------------------------------~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~  403 (540)
                      .....                                      .....+|...|++++|+|+|++|++++.|+.|++||+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~  353 (611)
T 1nr0_A          274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI  353 (611)
T ss_dssp             EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence            22110                                      0112469999999999999999999999999999999


Q ss_pred             CCCCeeeee-----------------------------------------------------------------------
Q 009203          404 GVGRADFKH-----------------------------------------------------------------------  412 (540)
Q Consensus       404 ~~~~~~~~~-----------------------------------------------------------------------  412 (540)
                      .++......                                                                       
T Consensus       354 ~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~  433 (611)
T 1nr0_A          354 STGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH  433 (611)
T ss_dssp             TTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSE
T ss_pred             CCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCce
Confidence            876542211                                                                       


Q ss_pred             ------------ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC
Q 009203          413 ------------QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL  480 (540)
Q Consensus       413 ------------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~  480 (540)
                                  .....+.+++|+|++   .+|++|+.|++|++||+.+......     .. .+|...|++++|+|+|+
T Consensus       434 v~~~~~~~~~~~~~~~~v~~va~spdg---~~lasgs~D~~v~lwd~~~~~~~~~-----~~-~~h~~~v~~v~fspdg~  504 (611)
T 1nr0_A          434 IAIYSHGKLTEVPISYNSSCVALSNDK---QFVAVGGQDSKVHVYKLSGASVSEV-----KT-IVHPAEITSVAFSNNGA  504 (611)
T ss_dssp             EEEEETTEEEEEECSSCEEEEEECTTS---CEEEEEETTSEEEEEEEETTEEEEE-----EE-EECSSCEEEEEECTTSS
T ss_pred             EEEEeCCceeeeecCCCceEEEEeCCC---CEEEEeCCCCeEEEEEccCCceeee-----ec-cCCCCceEEEEECCCCC
Confidence                        001224567788877   7999999999999999976542111     12 46888999999999999


Q ss_pred             EEEEEeCCCcEEEEeccCCCCccccc--ccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          481 YITSGSADPVIHLFDIRYSANKPSQS--IRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       481 ~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +|++++.|+.|++|++.+. ++.+..  +.+|...|++++|+|||++|++|+.|++|+||++
T Consensus       505 ~las~s~d~~v~~w~~~~~-~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~  565 (611)
T 1nr0_A          505 FLVATDQSRKVIPYSVANN-FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM  565 (611)
T ss_dssp             EEEEEETTSCEEEEEGGGT-TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEEcCCCCEEEEEcCCC-CceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence            9999999999999999862 333333  4459999999999999999999999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-46  Score=372.84  Aligned_cols=289  Identities=16%  Similarity=0.265  Sum_probs=256.0

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+.+|.++|++++|+|+ +.+|++|+.||+|+|||+.+++....+        .+|.+.|.+++|+|++++|++|    +
T Consensus       103 ~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l--------~~h~~~V~~v~~~~~~~~l~sg----s  169 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTL--------KGHTDSVQDISFDHSGKLLASC----S  169 (410)
T ss_dssp             EEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEE--------CCCSSCEEEEEECTTSSEEEEE----E
T ss_pred             eecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEE--------eccCCcEEEEEEcCCCCEEEEE----e
Confidence            35799999999999996 899999999999999999998877666        6899999999999999999999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .|++|++||+.++   .++..+.+   |...|.+++|+| ++.+|++|+.|++|++||++++.+   ...+  .+|...|
T Consensus       170 ~D~~i~iwd~~~~---~~~~~~~~---h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~---~~~~--~~h~~~v  237 (410)
T 1vyh_C          170 ADMTIKLWDFQGF---ECIRTMHG---HDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYC---VKTF--TGHREWV  237 (410)
T ss_dssp             TTSCCCEEETTSS---CEEECCCC---CSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE---EEEE--ECCSSCE
T ss_pred             CCCeEEEEeCCCC---ceeEEEcC---CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcE---EEEE--eCCCccE
Confidence            9999999999875   55666664   677899999999 999999999999999999999875   2333  5699999


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCC-----------------CceEEEEEcCC
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDF-----------------NLFMVQTGTPG  439 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~d  439 (540)
                      .++.|+|++.+|++|+.|+.|++||++++...... .+...+.++.|+|+..                 .+.+|++|+.|
T Consensus       238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D  317 (410)
T 1vyh_C          238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  317 (410)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence            99999999999999999999999999998876654 4556788999988632                 13589999999


Q ss_pred             CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEE
Q 009203          440 RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVW  519 (540)
Q Consensus       440 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~  519 (540)
                      +.|++||++++....       .+.+|...|++++|+|+|++|++|+.||.|++||+.+  ++++..+.+|...|++++|
T Consensus       318 ~~i~iwd~~~~~~~~-------~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~--~~~~~~~~~h~~~v~~l~~  388 (410)
T 1vyh_C          318 KTIKMWDVSTGMCLM-------TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN--KRCMKTLNAHEHFVTSLDF  388 (410)
T ss_dssp             SEEEEEETTTTEEEE-------EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT--SCCCEEEECCSSCEEEEEE
T ss_pred             CeEEEEECCCCceEE-------EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceEEEEcCCCCcEEEEEE
Confidence            999999999877543       3457899999999999999999999999999999987  7788899999999999999


Q ss_pred             cCCCCEEEEEEcCCcEEEEeC
Q 009203          520 HYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       520 s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +|++.+|++|+.||+|+||++
T Consensus       389 ~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          389 HKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CSSSSCEEEEETTSEEEEEC-
T ss_pred             cCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=352.71  Aligned_cols=288  Identities=17%  Similarity=0.223  Sum_probs=249.2

Q ss_pred             cccccCceEEEEEecC---CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          219 SSLHKRKLRSLSLNPV---NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd---~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      +.+|.+.|++|+|+|+   ++.+|++|+.|++|+||++.........  ..    .+|...|.+++|++++.+++++   
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~--~l----~gh~~~v~~~~~~~~~~~l~s~---   98 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW--SL----EGHQLGVVSVDISHTLPIAASS---   98 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE--EE----CCCSSCEEEEEECSSSSEEEEE---
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee--ee----ccCCCCEEEEEECCCCCEEEEE---
Confidence            4799999999999984   3579999999999999999875432211  11    5899999999999999999999   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                       +.|+.|++||+.++   ..+..+..   +...+.+++|+| ++.+|++|+.||.|++||+.++..     ......|..
T Consensus        99 -s~D~~i~lWd~~~~---~~~~~~~~---~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~-----~~~~~~~~~  165 (321)
T 3ow8_A           99 -SLDAHIRLWDLENG---KQIKSIDA---GPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKK-----EYSLDTRGK  165 (321)
T ss_dssp             -ETTSEEEEEETTTT---EEEEEEEC---CTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSE-----EEEEECSSS
T ss_pred             -eCCCcEEEEECCCC---CEEEEEeC---CCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCce-----eEEecCCCc
Confidence             99999999999986   45555554   456789999999 999999999999999999998864     222345888


Q ss_pred             ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      .|.+++|+|+|++|++++.||.|++||+++++.+.... +...+.++.|+|++   .+|++|+.|+.|++||+++.....
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~---~~l~s~s~dg~i~iwd~~~~~~~~  242 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS---QLLVTASDDGYIKIYDVQHANLAG  242 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS---CEEEEECTTSCEEEEETTTCCEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC---CEEEEEcCCCeEEEEECCCcceeE
Confidence            99999999999999999999999999999998876654 45678899999987   699999999999999999776433


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCc
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLN  534 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~  534 (540)
                             .+.+|...|.+++|+|++.+|++|+.||.|++||+.+  ++++..+.+|.+.|++++|+|++++|++++.||+
T Consensus       243 -------~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~--~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~  313 (321)
T 3ow8_A          243 -------TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT--RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE  313 (321)
T ss_dssp             -------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred             -------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence                   4568999999999999999999999999999999997  7888999999999999999999999999999999


Q ss_pred             EEEEeC
Q 009203          535 IGLHKI  540 (540)
Q Consensus       535 v~iw~l  540 (540)
                      |+|||+
T Consensus       314 i~vwd~  319 (321)
T 3ow8_A          314 IHIYDC  319 (321)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.7e-45  Score=383.52  Aligned_cols=343  Identities=17%  Similarity=0.199  Sum_probs=271.2

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccccc
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHK  223 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~  223 (540)
                      .++.+|...|.++++.|..+                              ..+++++.|++|++|+..     ..+.+|.
T Consensus       141 ~~l~gh~~~v~~v~f~p~~~------------------------------~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~  190 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKPSRP------------------------------FRIISGSDDNTVAIFEGPPFKFKSTFGEHT  190 (611)
T ss_dssp             BCCCCCSSCEEEEEECSSSS------------------------------CEEEEEETTSCEEEEETTTBEEEEEECCCS
T ss_pred             ceecCCCCCceEEEECCCCC------------------------------eEEEEEeCCCeEEEEECCCCeEeeeecccc
Confidence            44567778888888877643                              147788899999999864     4588999


Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      +.|++++|+|| +.+||+|+.|++|+|||+.+++....+.... ....+|.+.|.+++|+|+|++|+++    +.|++|+
T Consensus       191 ~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~~-~~~~~h~~~V~~v~~spdg~~l~s~----s~D~~v~  264 (611)
T 1nr0_A          191 KFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDS-LKNVAHSGSVFGLTWSPDGTKIASA----SADKTIK  264 (611)
T ss_dssp             SCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCTT-SSSCSSSSCEEEEEECTTSSEEEEE----ETTSEEE
T ss_pred             CceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeecccc-ccccccCCCEEEEEECCCCCEEEEE----eCCCeEE
Confidence            99999999996 9999999999999999998887655442110 1113799999999999999999999    9999999


Q ss_pred             EEecCCCCCceeEEeec----------------------------------------CCCCcccceeEEEEeCCCCCEEE
Q 009203          304 VLNLNKTKGRACVTFLD----------------------------------------DKPHVKGIINSIIFLPWENPCFA  343 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~----------------------------------------~~~~~~~~v~~~~~~p~~~~~l~  343 (540)
                      +||+.+++   ++..+.                                        ....|...|.+++|+| ++.+|+
T Consensus       265 lWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~  340 (611)
T 1nr0_A          265 IWNVATLK---VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLF  340 (611)
T ss_dssp             EEETTTTE---EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             EEeCCCCc---eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEE
Confidence            99998752   222111                                        0113678899999999 999999


Q ss_pred             EEecCCcEEEEecCCCCCccccce--------------------------------------------------------
Q 009203          344 TGGSDHAVVLWSERDAEDSWKPKA--------------------------------------------------------  367 (540)
Q Consensus       344 s~~~dg~i~iwd~~~~~~~~~~~~--------------------------------------------------------  367 (540)
                      +++.|++|++||+.++........                                                        
T Consensus       341 s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s  420 (611)
T 1nr0_A          341 SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS  420 (611)
T ss_dssp             EEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEEC
T ss_pred             EEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEe
Confidence            999999999999987643110000                                                        


Q ss_pred             ---------------------eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--eeeeccCccEEEEeec
Q 009203          368 ---------------------LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--DFKHQIESKCMSVLPN  424 (540)
Q Consensus       368 ---------------------~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~  424 (540)
                                           +....|...+.+++|+|+|++|++|+.|+.|++||+..+..  .....+...+.+++|+
T Consensus       421 ~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fs  500 (611)
T 1nr0_A          421 ADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS  500 (611)
T ss_dssp             TTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEEC
T ss_pred             CCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEEC
Confidence                                 00001334578999999999999999999999999987643  2334566789999999


Q ss_pred             CCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccc
Q 009203          425 PCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPS  504 (540)
Q Consensus       425 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~  504 (540)
                      |++   .+|++++.|++|++||+.+.......    .....|...|++++|+|||++|++|+.|+.|++||+..+ ....
T Consensus       501 pdg---~~las~s~d~~v~~w~~~~~~~~~~~----~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~-~~~~  572 (611)
T 1nr0_A          501 NNG---AFLVATDQSRKVIPYSVANNFELAHT----NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP-SDHP  572 (611)
T ss_dssp             TTS---SEEEEEETTSCEEEEEGGGTTEESCC----CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT-TSCC
T ss_pred             CCC---CEEEEEcCCCCEEEEEcCCCCceeee----eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc-cccc
Confidence            988   79999999999999999873222211    022359999999999999999999999999999999874 2233


Q ss_pred             -cccccc-ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          505 -QSIRAH-QKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       505 -~~~~~h-~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                       ..+.+| ...|++++|+|+++ |++++.|++|++|++
T Consensus       573 ~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          573 IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence             567789 89999999999998 999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.2e-45  Score=353.45  Aligned_cols=289  Identities=19%  Similarity=0.258  Sum_probs=249.4

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+.+|.+.|++++|+|| +.+|++|+.||+|+|||+.++.....+        ..|...|.+++|+|++++|+++    +
T Consensus        50 ~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~s~----~  116 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAI--------PLRSSWVMTCAYAPSGNYVACG----G  116 (340)
T ss_dssp             EECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEE--------ECSSSCEEEEEECTTSSEEEEE----E
T ss_pred             eecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCCcceEe--------ecCCccEEEEEECCCCCEEEEE----e
Confidence            35799999999999996 999999999999999999988766555        4788899999999999999999    9


Q ss_pred             CCCeEEEEecCCCCCc-eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          298 GDSQISVLNLNKTKGR-ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      .|+.|++||+.+.... .....+.+   |.+.|.++.|++ ++ .+++++.|++|++||+.+++.     .....+|...
T Consensus       117 ~d~~v~iw~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~-----~~~~~~h~~~  186 (340)
T 1got_B          117 LDNICSIYNLKTREGNVRVSRELAG---HTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQ-----TTTFTGHTGD  186 (340)
T ss_dssp             TTCEEEEEETTTCSBSCEEEEEEEC---CSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEE-----EEEECCCSSC
T ss_pred             CCCeEEEEECccCCCcceeEEEecC---CCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcE-----EEEEcCCCCc
Confidence            9999999999875321 23344444   678899999997 55 588999999999999998874     2233569999


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      |.+++|+|++.+|++|+.|+.|++||++++.....+. +...+.++.|+|++   .+|++|+.||+|++||+++......
T Consensus       187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---~~l~s~s~d~~v~iwd~~~~~~~~~  263 (340)
T 1got_B          187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMT  263 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC---CEEEEEcCCCcEEEEECCCCcEEEE
Confidence            9999999999999999999999999999998876654 45778999999987   6999999999999999998764332


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI  535 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v  535 (540)
                       +    ....+...|++++|+|+|++|++|+.||.|++||+.+  ...+..+.+|.+.|++++|+|+|.+|++|+.||+|
T Consensus       264 -~----~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i  336 (340)
T 1got_B          264 -Y----SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             -E----CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             -E----ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc--CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence             1    1233455799999999999999999999999999987  67888899999999999999999999999999999


Q ss_pred             EEEe
Q 009203          536 GLHK  539 (540)
Q Consensus       536 ~iw~  539 (540)
                      +|||
T Consensus       337 ~iWd  340 (340)
T 1got_B          337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.6e-44  Score=348.75  Aligned_cols=290  Identities=18%  Similarity=0.220  Sum_probs=247.1

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+.||.+.|++++|+|| +.+|++|+.||+|+|||..+++....+        ..|...|.+++|+|+|.+|+++    +
T Consensus        59 ~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~--------~~~~~~v~~~~~sp~g~~lasg----~  125 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAV--------TMPCTWVMACAYAPSGCAIACG----G  125 (354)
T ss_dssp             EEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEE--------ECSSSCCCEEEECTTSSEEEEE----S
T ss_pred             EecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEE--------ecCCCCEEEEEECCCCCEEEEe----e
Confidence            35799999999999996 899999999999999999887765555        3677889999999999999999    9


Q ss_pred             CCCeEEEEecCCCCC---ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203          298 GDSQISVLNLNKTKG---RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                      .|+.+++|++.....   ......+.   .|.+.|.+++|+| ++..|++++.|++|++||+++++.   ...+  .+|.
T Consensus       126 ~d~~i~v~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~---~~~~--~~h~  196 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMAAKKKSVA---MHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQL---LQSF--HGHG  196 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSGGGCEEEE---ECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE---EEEE--ECCS
T ss_pred             CCCCEEEEEEeccccccccccceeee---ccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeE---EEEE--cCCC
Confidence            999999999875421   11223333   2678899999999 999999999999999999999874   2233  5699


Q ss_pred             cceeEEEecc--CCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          375 SAVMGVAGMQ--QKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       375 ~~v~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      ..|.+++|+|  +|++|++|+.||.|++||+++++++..+. +...+.++.|+|++   .+|++|+.|++|++||++...
T Consensus       197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---~~l~s~s~D~~v~lwd~~~~~  273 (354)
T 2pbi_B          197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG---DAFASGSDDATCRLYDLRADR  273 (354)
T ss_dssp             SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTE
T ss_pred             CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC---CEEEEEeCCCeEEEEECCCCc
Confidence            9999999987  57899999999999999999998876654 46778999999987   699999999999999999765


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      .... +    ....+...+.+++|+|+|.+|++|+.|+.|++||+.+  +..+..+.+|.+.|++++|+|+|++|++|+.
T Consensus       274 ~~~~-~----~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~--~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          274 EVAI-Y----SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK--GSRVSILFGHENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             EEEE-E----CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CSEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEEE-E----cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC--CceEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence            4322 1    1123445789999999999999999999999999987  6778889999999999999999999999999


Q ss_pred             CCcEEEEe
Q 009203          532 DLNIGLHK  539 (540)
Q Consensus       532 dg~v~iw~  539 (540)
                      ||+|+||+
T Consensus       347 D~~v~vW~  354 (354)
T 2pbi_B          347 DHTLRVWA  354 (354)
T ss_dssp             TSEEEEEC
T ss_pred             CCCEEecC
Confidence            99999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.7e-45  Score=352.34  Aligned_cols=307  Identities=17%  Similarity=0.234  Sum_probs=231.8

Q ss_pred             cCCCCeEEEeccc-hhcccccCceEEEEEecCCCcEEEEEeC------CceEEEEEcCCCCCcceeecccccCCCCCCCC
Q 009203          204 SASPATIHCHTSN-HVSSLHKRKLRSLSLNPVNEQLFVTSAL------DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRW  276 (540)
Q Consensus       204 ~~~d~~i~~~~~~-~~~~~h~~~V~~l~~spd~~~~l~tg~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~  276 (540)
                      +..+.....|+.. ....+|.+.|++|+|+|| |++||+|+.      |+.|++|+..++.....+....    .+|...
T Consensus        22 ~~g~~~~~~w~~p~~~p~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~----~~~~~~   96 (357)
T 4g56_B           22 SNGSSKGSAWGRPVTAPACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG----VQTEAG   96 (357)
T ss_dssp             ------------------CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE----EECSSC
T ss_pred             cCCCccccccCCCCCCcccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc----CCCCCC
Confidence            3345556677654 335689999999999996 999999997      7889999988776544332221    368889


Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEec
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE  356 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  356 (540)
                      |.+++|+|++.+|+ +    +.||+|++||+.+++....... .. ..|.+.|.+++|+| ++++|++|+.|+.|++||+
T Consensus        97 V~~~~~s~d~~~l~-~----s~dg~v~lWd~~~~~~~~~~~~-~~-~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~  168 (357)
T 4g56_B           97 VTDVAWVSEKGILV-A----SDSGAVELWEILEKESLLVNKF-AK-YEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDL  168 (357)
T ss_dssp             EEEEEEETTTEEEE-E----ETTSCEEEC--------CCCCE-EE-CCCSSCEEEEEECS-SSSEEEEEETTSCEEEEET
T ss_pred             EEEEEEcCCCCEEE-E----ECCCEEEEeeccccceeEEEee-cc-CCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEEC
Confidence            99999999986554 5    6899999999987643211111 11 13678899999999 9999999999999999999


Q ss_pred             CCCCCccccceeecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCCCceE
Q 009203          357 RDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  432 (540)
                      .+++.     .....+|...|++++|++++. ++++++.||.|++||+++++.....   .....+.++.|+|++.  .+
T Consensus       169 ~~~~~-----~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~~  241 (357)
T 4g56_B          169 SQKAV-----LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD--DT  241 (357)
T ss_dssp             TTTEE-----EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST--TE
T ss_pred             CCCcE-----EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc--ce
Confidence            98874     223356999999999999875 7899999999999999998875543   3456788999999754  48


Q ss_pred             EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCcccccccccc
Q 009203          433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQ  511 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~  511 (540)
                      |++|+.|+.|++||+++++...       .+.+|...|++++|+|++ ++|++|+.||.|+|||+.+  ++++.. .+|.
T Consensus       242 la~g~~d~~i~~wd~~~~~~~~-------~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~--~~~~~~-~~H~  311 (357)
T 4g56_B          242 FACGDETGNVSLVNIKNPDSAQ-------TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF--SEVFRD-LSHR  311 (357)
T ss_dssp             EEEEESSSCEEEEESSCGGGCE-------EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS--CEEEEE-CCCS
T ss_pred             EEEeecccceeEEECCCCcEeE-------EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC--CcEeEE-CCCC
Confidence            9999999999999999876533       446788999999999987 5799999999999999997  555544 4799


Q ss_pred             cceeEEEEcC-CCCEEEEEEcCCcEEEEeC
Q 009203          512 KRVFKAVWHY-SHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       512 ~~i~~l~~s~-~~~~l~s~~~dg~v~iw~l  540 (540)
                      +.|++|+|+| ++.+|+|||.||+|++|++
T Consensus       312 ~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence            9999999998 7899999999999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.5e-45  Score=358.72  Aligned_cols=302  Identities=20%  Similarity=0.240  Sum_probs=246.5

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      ++.||.+.|++++|+|+ +.+|++|+.||+|+|||+.+++....+        .+|...|.+++|+|+|++|+++    +
T Consensus        61 ~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~--------~~h~~~v~~~~~s~~g~~las~----~  127 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAI--------KLHCPWVMECAFAPNGQSVACG----G  127 (380)
T ss_dssp             EECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEE--------ECCCTTCCCCEECTTSSEEEEC----C
T ss_pred             cccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCccceEE--------ecCCCCEEEEEECCCCCEEEEe----e
Confidence            46799999999999996 899999999999999999988766655        4788999999999999999999    9


Q ss_pred             CCCeEEEEecCCCCC----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203          298 GDSQISVLNLNKTKG----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH  373 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  373 (540)
                      .|+.|++||+.+...    ......+.   .|.+.|.++.|.|.++..|++|+.|++|++||+.+++...........+|
T Consensus       128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~---gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h  204 (380)
T 3iz6_a          128 LDSACSIFNLSSQADRDGNMPVSRVLT---GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH  204 (380)
T ss_dssp             SSSCCEEEECCCCSSCCCSSTTCCBCC---CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred             CCCcEEEEECCCCccccCCccceeecc---CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence            999999999975321    11122333   47788999999995577899999999999999999875221111112568


Q ss_pred             CcceeEEEecc-CCCEEEEEeCCCeEEEEECCC-CCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          374 SSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGV-GRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       374 ~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      ...|.+++|++ ++++|++|+.|+.|++||++. +..+.. ..+...+.++.|+|++   .+|++|+.|++|++||++++
T Consensus       205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~---~~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG---QRFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS---SEEEEECSSSCEEEEETTTT
T ss_pred             ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC---CeEEEEcCCCeEEEEECCCC
Confidence            99999999977 889999999999999999984 344443 3456778899999987   69999999999999999987


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc----cccccceeEEEEcCCCCEE
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI----RAHQKRVFKAVWHYSHPLL  526 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~----~~h~~~i~~l~~s~~~~~l  526 (540)
                      ...............+...|++++|+|+|++|++|+.||.|++||+..  ++.+..+    .+|.+.|++++|+|+|.+|
T Consensus       282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  359 (380)
T 3iz6_a          282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL--AEMVLNLGTLQNSHEGRISCLGLSSDGSAL  359 (380)
T ss_dssp             EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT--CCEEEEECCSCSSCCCCCCEEEECSSSSEE
T ss_pred             cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC--CceEEEEecccCCCCCceEEEEECCCCCEE
Confidence            754332221112223444689999999999999999999999999987  4555444    6799999999999999999


Q ss_pred             EEEEcCCcEEEEeC
Q 009203          527 ISISSDLNIGLHKI  540 (540)
Q Consensus       527 ~s~~~dg~v~iw~l  540 (540)
                      ++|+.||+|+||++
T Consensus       360 ~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          360 CTGSWDKNLKIWAF  373 (380)
T ss_dssp             EEECTTSCEEEEEC
T ss_pred             EEeeCCCCEEEEec
Confidence            99999999999986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.2e-44  Score=338.75  Aligned_cols=289  Identities=18%  Similarity=0.190  Sum_probs=244.2

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      .++.+|.+.|++++|+|| +.+|++|+.||+|+|||+.++.....+        .+|..+|.+++|+|++++|+++    
T Consensus         7 ~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~----   73 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSI--------QVTETPVRAGKFIARKNWIIVG----   73 (304)
T ss_dssp             EEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEEEGGGTEEEEE----
T ss_pred             EeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEe--------eccCCcEEEEEEeCCCCEEEEE----
Confidence            457899999999999996 999999999999999999988766655        4788899999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|+.|++||+.++   ..+..+.+   |.+.|.+++|+| ++.+|++|+.|++|++||++++..    ......+|...
T Consensus        74 s~d~~i~vwd~~~~---~~~~~~~~---h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~----~~~~~~~h~~~  142 (304)
T 2ynn_A           74 SDDFRIRVFNYNTG---EKVVDFEA---HPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWA----LEQTFEGHEHF  142 (304)
T ss_dssp             ETTSEEEEEETTTC---CEEEEEEC---CSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTE----EEEEECCCCSC
T ss_pred             CCCCEEEEEECCCC---cEEEEEeC---CCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcc----hhhhhcccCCc
Confidence            99999999999987   45666664   678899999999 999999999999999999987642    22233579999


Q ss_pred             eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      |.+++|+| ++.+|++|+.|+.|++||++.+......  .....+..+.+.|... ..+|++|+.|++|++||++++.+.
T Consensus       143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~D~~i~iWd~~~~~~~  221 (304)
T 2ynn_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIWDYQTKSCV  221 (304)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTT-CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCC-CCEEEEEcCCCeEEEEeCCCCccc
Confidence            99999999 6789999999999999999887665443  2335566677766321 168999999999999999987654


Q ss_pred             eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC--EEEEEEc
Q 009203          454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP--LLISISS  531 (540)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~--~l~s~~~  531 (540)
                      .       .+.+|...|.+++|+|++.+|++|+.||.|++||+.+  .+.+..+..|...+++++|+|++.  ++++|+.
T Consensus       222 ~-------~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~  292 (304)
T 2ynn_A          222 A-------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST--YKVEKTLNVGLERSWCIATHPTGRKNYIASGFD  292 (304)
T ss_dssp             E-------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--CCEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred             e-------eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC--CceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence            3       4567999999999999999999999999999999998  788889999999999999999885  5777765


Q ss_pred             CCcEEEEeC
Q 009203          532 DLNIGLHKI  540 (540)
Q Consensus       532 dg~v~iw~l  540 (540)
                      || +.+|++
T Consensus       293 ~g-~~~~~~  300 (304)
T 2ynn_A          293 NG-FTVLSL  300 (304)
T ss_dssp             TE-EEEEEC
T ss_pred             Cc-eEEEEe
Confidence            55 666653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.7e-43  Score=365.57  Aligned_cols=350  Identities=20%  Similarity=0.273  Sum_probs=287.5

Q ss_pred             CCeeeecCCcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccceEE---------ecCCCCeEEEec
Q 009203          146 GSSTQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIPLVR---------TSASPATIHCHT  214 (540)
Q Consensus       146 ~~~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~~d~~i~~~~  214 (540)
                      .....+.+|...|.++++.|.....+  +.+..+. +|.........+.+|...|..++         +++.|+++++|+
T Consensus       212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~-~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~  290 (577)
T 2ymu_A          212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK-LWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN  290 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE-EECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEE-EEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence            34567778999999999999876555  4454444 34433333445567777776555         455688999997


Q ss_pred             cc----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEE
Q 009203          215 SN----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLF  290 (540)
Q Consensus       215 ~~----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  290 (540)
                      ..    ..+.+|.+.|++++|+|+ +.+|++++.|++|++||..... ...+        .+|...|.+++|+|++++|+
T Consensus       291 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~d~~i~~w~~~~~~-~~~~--------~~~~~~v~~~~~s~~g~~l~  360 (577)
T 2ymu_A          291 RNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNGQH-LQTL--------TGHSSSVWGVAFSPDGQTIA  360 (577)
T ss_dssp             TTSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSCE-EEEE--------CCCSSCEEEEEECTTSSEEE
T ss_pred             CCCcEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCCCCe-eEEE--------eCCCCCEEEEEECCCCCEEE
Confidence            64    457899999999999996 8999999999999999986543 2233        57889999999999999999


Q ss_pred             EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203          291 SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       291 s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                      ++    +.|+.|++||.. +   ..+..+..   |...|.+++|+| ++.+|++++.|+.|++||... +.   ...+  
T Consensus       361 ~~----~~dg~v~~~~~~-~---~~~~~~~~---~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~~-~~---~~~~--  422 (577)
T 2ymu_A          361 SA----SDDKTVKLWNRN-G---QLLQTLTG---HSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNG-QL---LQTL--  422 (577)
T ss_dssp             EE----ETTSEEEEEETT-C---CEEEEEEC---CSSCEEEEEECT-TSSCEEEEETTSEEEEECTTC-CE---EEEE--
T ss_pred             EE----eCCCEEEEEcCC-C---CEEEEecC---CCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCC-CE---EEEe--
Confidence            99    999999999965 2   44555554   567899999999 999999999999999999654 32   2233  


Q ss_pred             ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee-eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203          371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF-KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL  449 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  449 (540)
                      .+|...|++++|+|++++|++++.|+.|++||.. ++.+. ...+...+.+++|+|++   .+|++++.|+.|++||.. 
T Consensus       423 ~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~---~~las~~~d~~i~iw~~~-  497 (577)
T 2ymu_A          423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDG---QTIASASDDKTVKLWNRN-  497 (577)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTS---CEEEEEETTSEEEEEETT-
T ss_pred             cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCC---CEEEEEeCCCEEEEEcCC-
Confidence            4699999999999999999999999999999975 44443 34556788999999987   799999999999999964 


Q ss_pred             CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE
Q 009203          450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI  529 (540)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~  529 (540)
                      ++...       .+.+|...|++++|+|+|++|++++.||.|++||..   ++++..+.+|.+.|++++|+|||++|+|+
T Consensus       498 ~~~~~-------~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~---~~~~~~~~~h~~~v~~~~fs~dg~~l~s~  567 (577)
T 2ymu_A          498 GQLLQ-------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPDGQTIASA  567 (577)
T ss_dssp             SCEEE-------EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT---SCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             CCEEE-------EEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC---CCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            33222       446799999999999999999999999999999975   67888999999999999999999999999


Q ss_pred             EcCCcEEEEe
Q 009203          530 SSDLNIGLHK  539 (540)
Q Consensus       530 ~~dg~v~iw~  539 (540)
                      +.|++|++||
T Consensus       568 ~~D~~i~~Wd  577 (577)
T 2ymu_A          568 SSDKTVKLWN  577 (577)
T ss_dssp             ETTSCEEEEC
T ss_pred             eCCCEEEEeC
Confidence            9999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-43  Score=339.78  Aligned_cols=303  Identities=22%  Similarity=0.285  Sum_probs=241.4

Q ss_pred             hcccccC-ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          218 VSSLHKR-KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~-~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      .+.+|.+ .|++++|+|| +.+||+|+.|++|+|||+..+........     ..+|...|.+++|+|+|++|+++    
T Consensus        10 ~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~-----~~~h~~~v~~~~~sp~g~~l~s~----   79 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVL-----SEGHQRTVRKVAWSPCGNYLASA----   79 (345)
T ss_dssp             EECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEE-----CSSCSSCEEEEEECTTSSEEEEE----
T ss_pred             eecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeee-----ccccCCcEEEEEECCCCCEEEEE----
Confidence            4578988 9999999996 99999999999999999987643222111     14899999999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|+.|++||+..+. ..++..+.+   |.+.|.+++|+| ++++|++|+.|++|++||+.++.......  ...+|...
T Consensus        80 s~D~~v~iw~~~~~~-~~~~~~~~~---h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~~h~~~  152 (345)
T 3fm0_A           80 SFDATTCIWKKNQDD-FECVTTLEG---HENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVS--VLNSHTQD  152 (345)
T ss_dssp             ETTSCEEEEEECCC--EEEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEE--EECCCCSC
T ss_pred             ECCCcEEEEEccCCC-eEEEEEccC---CCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEE--EecCcCCC
Confidence            999999999998652 244556664   678899999999 99999999999999999998765311112  23569999


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCee--ee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD--FK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      |.+++|+|++.+|++++.|+.|++||.+.+...  .. ..+...+.++.|+|++   .+|++|+.|++|++||.......
T Consensus       153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g---~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG---QRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEEEECTTCT
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC---CEEEEEeCCCeEEEeccccCCCC
Confidence            999999999999999999999999999877543  22 3456788999999987   79999999999999997432211


Q ss_pred             eee--------eccccccC-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc--c-----cccccccccceeEE
Q 009203          454 IHA--------FGWKQESS-ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK--P-----SQSIRAHQKRVFKA  517 (540)
Q Consensus       454 ~~~--------~~~~~~~~-~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~--~-----~~~~~~h~~~i~~l  517 (540)
                      ...        ......+. .|...|.+++|+|++..|++++.|+.|++|+.......  +     .....+|...|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  309 (345)
T 3fm0_A          230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV  309 (345)
T ss_dssp             TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred             ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence            000        00011222 37889999999999999999999999999998753111  1     12235799999999


Q ss_pred             EEcCCCC-EEEEEEcCCcEEEEeC
Q 009203          518 VWHYSHP-LLISISSDLNIGLHKI  540 (540)
Q Consensus       518 ~~s~~~~-~l~s~~~dg~v~iw~l  540 (540)
                      +|+|++. +|++|+.||+|++|++
T Consensus       310 ~~~p~~~~~laS~s~Dg~v~~W~~  333 (345)
T 3fm0_A          310 AWNPKEPGLLASCSDDGEVAFWKY  333 (345)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEEE
T ss_pred             EEeCCCceEEEEcCCCCcEEEEEe
Confidence            9999984 9999999999999984

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.6e-43  Score=347.07  Aligned_cols=282  Identities=17%  Similarity=0.249  Sum_probs=245.5

Q ss_pred             eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccC
Q 009203          150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKR  224 (540)
Q Consensus       150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~  224 (540)
                      .+.+|...|+++.+.|..+                               .+++++.|++|++|+..     ..+.+|.+
T Consensus       103 ~l~gh~~~V~~~~~~p~~~-------------------------------~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~  151 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFS-------------------------------VMVSASEDATIKVWDYETGDFERTLKGHTD  151 (410)
T ss_dssp             EEECCSSCEEEEEECSSSS-------------------------------EEEEEESSSCEEEEETTTCCCCEEECCCSS
T ss_pred             eecccCCcEEEEEEcCCCC-------------------------------EEEEEeCCCeEEEEECCCCcEEEEEeccCC
Confidence            4578999999999998743                               57889999999999764     56899999


Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      .|++++|+|+ +.+|++|+.|++|+|||+.+.+++..+        .+|...|.+++|+|++++|+++    +.|+.|++
T Consensus       152 ~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~~~~~~--------~~h~~~V~~v~~~p~~~~l~s~----s~D~~i~~  218 (410)
T 1vyh_C          152 SVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIRTM--------HGHDHNVSSVSIMPNGDHIVSA----SRDKTIKM  218 (410)
T ss_dssp             CEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEECC--------CCCSSCEEEEEECSSSSEEEEE----ETTSEEEE
T ss_pred             cEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEE--------cCCCCCEEEEEEeCCCCEEEEE----eCCCeEEE
Confidence            9999999995 899999999999999999887765555        5899999999999999999999    99999999


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  384 (540)
                      ||+.++   .++..+.+   |...|.++.|+| ++.+|++|+.|++|++||+.++.+   ..  ...+|...|.+++|+|
T Consensus       219 wd~~~~---~~~~~~~~---h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~---~~--~~~~h~~~v~~~~~~~  286 (410)
T 1vyh_C          219 WEVQTG---YCVKTFTG---HREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKEC---KA--ELREHRHVVECISWAP  286 (410)
T ss_dssp             EETTTC---CEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE---EE--EECCCSSCEEEEEECC
T ss_pred             EECCCC---cEEEEEeC---CCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCce---ee--EecCCCceEEEEEEcC
Confidence            999986   45666665   677899999999 999999999999999999998874   22  2356999999999999


Q ss_pred             C--------------------CCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203          385 Q--------------------KQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLR  443 (540)
Q Consensus       385 ~--------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  443 (540)
                      +                    |.+|++|+.|+.|++||++++.++.... +...+.++.|+|++   .+|++|+.|+.|+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g---~~l~s~s~D~~i~  363 (410)
T 1vyh_C          287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG---KFILSCADDKTLR  363 (410)
T ss_dssp             SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS---SCEEEEETTTEEE
T ss_pred             cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCC---CEEEEEeCCCeEE
Confidence            6                    6789999999999999999998876643 55678899999987   6899999999999


Q ss_pred             EEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      +||+.+++...       .+.+|...|++++|+|++.+|++|+.||.|+||+++
T Consensus       364 vwd~~~~~~~~-------~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          364 VWDYKNKRCMK-------TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EECCTTSCCCE-------EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEECCCCceEE-------EEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99998776533       446789999999999999999999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.3e-43  Score=336.08  Aligned_cols=294  Identities=16%  Similarity=0.193  Sum_probs=230.7

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCccee---ecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASL---LSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~---~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      ...|...|.+++|+|| |++|++++ |+++++||..........   ..........|...|.+++|+|++ .|+++   
T Consensus        26 ~~~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~---   99 (344)
T 4gqb_B           26 PACMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVA---   99 (344)
T ss_dssp             CSSCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEE---
T ss_pred             cccccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEE---
Confidence            3567788999999996 89999888 778888874211000000   000000002356789999999985 67788   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEe-ecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203          296 DSGDSQISVLNLNKTKGRACVTF-LDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                       +.||+|+|||+.+++....... +.   .|.+.|++++|+| ++++|++|+.|++|++||+.++++   ..  ...+|.
T Consensus       100 -s~dg~v~lWd~~~~~~~~~~~~~~~---~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~---~~--~~~~h~  169 (344)
T 4gqb_B          100 -SDSGAVELWELDENETLIVSKFCKY---EHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVV---LS--SYRAHA  169 (344)
T ss_dssp             -ETTSEEEEEEECTTSSCEEEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE---EE--EECCCS
T ss_pred             -ECCCEEEEEeccCCCceeEeecccc---CCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE---EE--EEcCcC
Confidence             8999999999998754332222 22   3678899999999 999999999999999999999874   22  335699


Q ss_pred             cceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeeeeec---cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          375 SAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADFKHQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       375 ~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      ..|++++|++++. +|++++.|+.|++||+++++......   ....+.++.|+|.+.  .++++|+.||.|++||++++
T Consensus       170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS--EVFVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT--TEEEEEETTSEEEEEESCC-
T ss_pred             CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC--cceEEeccCCcEEEEECCCC
Confidence            9999999999884 78999999999999999988766533   345678999998654  48999999999999999987


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCC-EEEE
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-LLIS  528 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s  528 (540)
                      +...       .+.+|...|++++|+|+| ++|++|+.||.|+|||+.+  ++ +..+.+|.+.|++++|+|+++ +|++
T Consensus       248 ~~~~-------~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~--~~-~~~~~~H~~~V~~v~~sp~~~~llas  317 (344)
T 4gqb_B          248 SCVL-------SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL--SE-LFRSQAHRDFVRDATWSPLNHSLLTT  317 (344)
T ss_dssp             -CCE-------EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--CE-EEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred             cEEE-------EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--Cc-EEEEcCCCCCEEEEEEeCCCCeEEEE
Confidence            7543       456799999999999998 5799999999999999986  44 446789999999999999986 5779


Q ss_pred             EEcCCcEEEEeC
Q 009203          529 ISSDLNIGLHKI  540 (540)
Q Consensus       529 ~~~dg~v~iw~l  540 (540)
                      ||.||+|++|++
T Consensus       318 ~s~D~~v~~w~v  329 (344)
T 4gqb_B          318 VGWDHQVVHHVV  329 (344)
T ss_dssp             EETTSCEEEEEC
T ss_pred             EcCCCeEEEEEC
Confidence            999999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.2e-42  Score=332.13  Aligned_cols=297  Identities=16%  Similarity=0.227  Sum_probs=234.3

Q ss_pred             hhcccccCceEEEEE-----ecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEE
Q 009203          217 HVSSLHKRKLRSLSL-----NPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFS  291 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~-----spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s  291 (540)
                      .++.||.+.|++++|     ++.++.+|++|+.|++|+|||+...+......... ....+|...|.+++|+|++.+|++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~-~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPH-KALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEE-EEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccccccc-chhccCCCceEEEEECCCCCEEEE
Confidence            457899999999999     66248999999999999999997654211110000 111589999999999999999999


Q ss_pred             EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc
Q 009203          292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN  371 (540)
Q Consensus       292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  371 (540)
                      +    +.|++|++||+.++   ..+..+.+   |.+.|.+++|+| ++.+|++|+.|++|++||+.....   .......
T Consensus        94 ~----s~D~~v~lwd~~~~---~~~~~~~~---h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~  159 (343)
T 2xzm_R           94 S----SWDKTLRLWDLRTG---TTYKRFVG---HQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECK---FSSAEKE  159 (343)
T ss_dssp             E----ETTSEEEEEETTSS---CEEEEEEC---CCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEE---EECCTTT
T ss_pred             E----cCCCcEEEEECCCC---cEEEEEcC---CCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCce---eeeeccc
Confidence            9    99999999999986   44566664   678899999999 999999999999999999984321   1111123


Q ss_pred             cCCcceeEEEeccCC----------CEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCC
Q 009203          372 LHSSAVMGVAGMQQK----------QIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGR  440 (540)
Q Consensus       372 ~~~~~v~~l~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  440 (540)
                      .|...|.+++|+|++          .+|++++.||.|++||.. ...... ..+...+.++.|+|++   .+|++|+.|+
T Consensus       160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g---~~l~sgs~dg  235 (343)
T 2xzm_R          160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNG---KYIATGGKDK  235 (343)
T ss_dssp             SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTS---SEEEEEETTC
T ss_pred             CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCC---CEEEEEcCCC
Confidence            688999999999987          789999999999999954 443333 4456789999999988   7999999999


Q ss_pred             eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc-----------cc
Q 009203          441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI-----------RA  509 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----------~~  509 (540)
                      .|++||+.........+       .+...|.+++|+|++.+++++ .|+.|++||+.+.....+..+           .+
T Consensus       236 ~v~iwd~~~~~~~~~~~-------~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (343)
T 2xzm_R          236 KLLIWDILNLTYPQREF-------DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG  307 (343)
T ss_dssp             EEEEEESSCCSSCSEEE-------ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred             eEEEEECCCCcccceee-------cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence            99999996544333222       234569999999999888765 577899999986322221122           26


Q ss_pred             cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          510 HQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       510 h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |...|++++|+|+|++|++|+.||.|++|++
T Consensus       308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             SCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred             CCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence            8889999999999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-41  Score=328.20  Aligned_cols=285  Identities=13%  Similarity=0.193  Sum_probs=242.3

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccc
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLH  222 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h  222 (540)
                      ...+.+|...|.++.+.|...                               .+++++.|++|++|+..     ..+.+|
T Consensus        48 ~~~l~gH~~~v~~~~~s~d~~-------------------------------~l~s~s~Dg~v~iWd~~~~~~~~~~~~~   96 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGTDSR-------------------------------LLLSASQDGKLIIWDSYTTNKVHAIPLR   96 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-------------------------------EEEEEETTTEEEEEETTTCCEEEEEECS
T ss_pred             heeecCCCCceEEEEECCCCC-------------------------------EEEEEeCCCcEEEEECCCCCcceEeecC
Confidence            456679999999999988743                               57888999999999754     457899


Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ...|.+++|+|+ +.+|++|+.|+.|++|++.+...........    .+|...|.++.|++++. |+++    +.|+.|
T Consensus        97 ~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~-l~s~----s~d~~i  166 (340)
T 1got_B           97 SSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSREL----AGHTGYLSCCRFLDDNQ-IVTS----SGDTTC  166 (340)
T ss_dssp             SSCEEEEEECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEE----ECCSSCEEEEEEEETTE-EEEE----ETTSCE
T ss_pred             CccEEEEEECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEe----cCCCccEEEEEECCCCc-EEEE----ECCCcE
Confidence            999999999995 9999999999999999998765322222221    48999999999998875 7777    899999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      ++||+.++   ..+..+.+   |.+.|.+++|+| ++.+|++|+.|+.|++||++++.+   ..  ...+|...|++++|
T Consensus       167 ~~wd~~~~---~~~~~~~~---h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~---~~--~~~~h~~~v~~v~~  234 (340)
T 1got_B          167 ALWDIETG---QQTTTFTG---HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC---RQ--TFTGHESDINAICF  234 (340)
T ss_dssp             EEEETTTT---EEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSE---EE--EECCCSSCEEEEEE
T ss_pred             EEEECCCC---cEEEEEcC---CCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCee---EE--EEcCCcCCEEEEEE
Confidence            99999986   55666664   678899999999 999999999999999999998864   22  23569999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      +|++++|++++.||.|++||+++++.+......   ..+.++.|+|++   .+|++|+.|+.|++||+.+.....     
T Consensus       235 ~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~g~~d~~i~vwd~~~~~~~~-----  306 (340)
T 1got_B          235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG---RLLLAGYDDFNCNVWDALKADRAG-----  306 (340)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS---SEEEEEETTSEEEEEETTTCCEEE-----
T ss_pred             cCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC---CEEEEECCCCeEEEEEcccCcEee-----
Confidence            999999999999999999999988876654433   368899999988   799999999999999998776433     


Q ss_pred             ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                        .+.+|...|++++|+|+|.+|++|+.||.|+|||
T Consensus       307 --~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          307 --VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --EeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence              4468999999999999999999999999999997

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.6e-41  Score=323.71  Aligned_cols=286  Identities=19%  Similarity=0.296  Sum_probs=244.6

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+.+|.+.|++++|+|+ +++|++|+.||.|++|++.+++....+        .+|...|.+++|+|++++|+++    +
T Consensus        18 ~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~s~----~   84 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTI--------SGHKLGISDVAWSSDSNLLVSA----S   84 (312)
T ss_dssp             EECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSEEEEE----E
T ss_pred             EEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhh--------ccCCCceEEEEEcCCCCEEEEE----C
Confidence            45799999999999996 899999999999999999887765555        5899999999999999999999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .|+.|++||+.++   .++..+..   |...|.+++|+| ++.+|++|+.|+.|++||+++++.   ...  ...|...|
T Consensus        85 ~d~~i~vwd~~~~---~~~~~~~~---~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~---~~~--~~~~~~~v  152 (312)
T 4ery_A           85 DDKTLKIWDVSSG---KCLKTLKG---HSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC---LKT--LPAHSDPV  152 (312)
T ss_dssp             TTSEEEEEETTTC---CEEEEEEC---CSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE---EEE--ECCCSSCE
T ss_pred             CCCEEEEEECCCC---cEEEEEcC---CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEE---EEE--ecCCCCcE
Confidence            9999999999986   45666654   677899999999 999999999999999999998764   222  24588999


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      .+++|+|++.+|++++.||.|++||+++++.+...  .....+..+.|+|++   .+|++++.|+.|++||+.++.....
T Consensus       153 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~  229 (312)
T 4ery_A          153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATLDNTLKLWDYSKGKCLKT  229 (312)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS---SEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC---CEEEEEcCCCeEEEEECCCCcEEEE
Confidence            99999999999999999999999999998876553  334567889999987   6899999999999999998765432


Q ss_pred             eeccccccCccccC---eEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE--
Q 009203          456 AFGWKQESSESQSA---LINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS--  530 (540)
Q Consensus       456 ~~~~~~~~~~~~~~---v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~--  530 (540)
                      .       .+|...   +......+++.+|++|+.||.|++||+.+  .+.+..+.+|...|.+++|+|++++|++++  
T Consensus       230 ~-------~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~  300 (312)
T 4ery_A          230 Y-------TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT--KEIVQKLQGHTDVVISTACHPTENIIASAALE  300 (312)
T ss_dssp             E-------CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT--CCEEEEECCCSSCEEEEEECSSSSEEEEEECT
T ss_pred             E-------EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC--chhhhhhhccCCcEEEEeecCcCCceEEEEcc
Confidence            2       334332   22333346889999999999999999997  778889999999999999999999999997  


Q ss_pred             cCCcEEEEeC
Q 009203          531 SDLNIGLHKI  540 (540)
Q Consensus       531 ~dg~v~iw~l  540 (540)
                      .|++|++|+.
T Consensus       301 ~d~~i~~W~~  310 (312)
T 4ery_A          301 NDKTIKLWKS  310 (312)
T ss_dssp             TTCCEEEEEC
T ss_pred             CCccEEEecC
Confidence            6999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.7e-42  Score=327.47  Aligned_cols=289  Identities=15%  Similarity=0.216  Sum_probs=238.3

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcc-eeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGA-SLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      ..+.||.+.|++++|+|+++.+|++|+.|++|++|++....... .....+    .+|...|.+++|+|++.+|+++   
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~----~~h~~~v~~~~~s~dg~~l~s~---   83 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF----KGHSHIVQDCTLTADGAYALSA---   83 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE----ECCSSCEEEEEECTTSSEEEEE---
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE----eCCcccEEEEEECCCCCEEEEE---
Confidence            35789999999999999756899999999999999987543211 111111    5899999999999999999999   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                       +.|++|++||+.++   ..+..+.+   |.+.|.+++|+| ++.+|++|+.|++|++||++...    ..  ...+|..
T Consensus        84 -s~D~~v~~wd~~~~---~~~~~~~~---h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~----~~--~~~~h~~  149 (319)
T 3frx_A           84 -SWDKTLRLWDVATG---ETYQRFVG---HKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQC----LA--TLLGHND  149 (319)
T ss_dssp             -ETTSEEEEEETTTT---EEEEEEEC---CSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCE----EE--EECCCSS
T ss_pred             -eCCCEEEEEECCCC---CeeEEEcc---CCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe----EE--EEeccCC
Confidence             99999999999986   55666665   678899999999 99999999999999999997543    22  3356999


Q ss_pred             ceeEEEeccC------CCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          376 AVMGVAGMQQ------KQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       376 ~v~~l~~s~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      .|.++.|+|.      +..+++++.|+.|++||+++++..... .+...+.++.|+|++   .+|++|+.||.|++||+.
T Consensus       150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g---~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG---TLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS---SEEEEEETTCEEEEEETT
T ss_pred             cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECC
Confidence            9999999984      458999999999999999988776543 456788999999987   799999999999999999


Q ss_pred             CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc--------cccccceeEEEEc
Q 009203          449 LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI--------RAHQKRVFKAVWH  520 (540)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~--------~~h~~~i~~l~~s  520 (540)
                      +.+.....       . +...|.+++|+|++.+|++++.++ +++|+++.  ...+..+        ..|...+.+++|+
T Consensus       227 ~~~~~~~~-------~-~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s  295 (319)
T 3frx_A          227 AKKAMYTL-------S-AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDP--QYLVDDLRPEFAGYSKAAEPHAVSLAWS  295 (319)
T ss_dssp             TTEEEEEE-------E-CCSCEEEEEECSSSSEEEEEETTE-EEEEEETT--EEEEEEECCCCTTCCGGGCCCEEEEEEC
T ss_pred             CCcEEEEe-------c-CCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCc--CeeeeccCccccccccCcCcceeEEEEC
Confidence            87654322       1 245799999999999999987655 99999986  3333222        2456689999999


Q ss_pred             CCCCEEEEEEcCCcEEEEeC
Q 009203          521 YSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       521 ~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |||++|++|+.||.|+|||+
T Consensus       296 pdg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          296 ADGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             TTSSEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEeecCceEEEEEE
Confidence            99999999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.6e-41  Score=347.16  Aligned_cols=349  Identities=20%  Similarity=0.255  Sum_probs=285.2

Q ss_pred             eeeecCCcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccceEEe---------cCCCCeEEEeccc
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIPLVRT---------SASPATIHCHTSN  216 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---------~~~d~~i~~~~~~  216 (540)
                      ......|...|.++.+.|...+.+  +.+..+. +|.........+.+|...|..+++         ++.|+.+++|+..
T Consensus       173 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~-~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~  251 (577)
T 2ymu_A          173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  251 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSEEE-EECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             eeeccCCCcceeeeeecCCCCEEEEEcCCCEEE-EEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            344557888899999998876655  4455444 444433444455677777766554         4568999999764


Q ss_pred             ----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEE
Q 009203          217 ----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSA  292 (540)
Q Consensus       217 ----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~  292 (540)
                          ..+.+|...|++++|+|| +.+|++++.|+.|++|+... +....+        .+|...|.+++|+|++.+|+++
T Consensus       252 ~~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~~~-~~~~~~--------~~h~~~v~~~~~~~~~~~l~t~  321 (577)
T 2ymu_A          252 GQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNRNG-QLLQTL--------TGHSSSVWGVAFSPDGQTIASA  321 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTS-CEEEEE--------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeCCC-cEEEEE--------ecCCCCeEEEEECCCCCEEEEE
Confidence                457899999999999996 89999999999999999753 333333        5899999999999999999999


Q ss_pred             eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203          293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL  372 (540)
Q Consensus       293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  372 (540)
                          +.|+.|++||+...    .+..+..   |...|.+++|+| ++.+|++|+.|+.|++||... +.   ...+  .+
T Consensus       322 ----~~d~~i~~w~~~~~----~~~~~~~---~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~-~~---~~~~--~~  383 (577)
T 2ymu_A          322 ----SDDKTVKLWNRNGQ----HLQTLTG---HSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG-QL---LQTL--TG  383 (577)
T ss_dssp             ----ETTSCEEEEETTSC----EEEEECC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTC-CE---EEEE--EC
T ss_pred             ----eCCCeEEEEeCCCC----eeEEEeC---CCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCC-CE---EEEe--cC
Confidence                99999999998743    3444544   567899999999 999999999999999999654 32   2223  45


Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      |...|.+++|+|+|++|++++.|+.|++||.. ++.+.. ..+...+.++.|+|++   .+|++++.|+.|++||.... 
T Consensus       384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~---~~l~~~~~d~~v~~w~~~~~-  458 (577)
T 2ymu_A          384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDD---QTIASASDDKTVKLWNRNGQ-  458 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTSC-
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCC---CEEEEEcCCCEEEEEECCCC-
Confidence            89999999999999999999999999999965 454443 4456788899999987   79999999999999997532 


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      ...       .+.+|...|++++|+|+|++|++++.|+.|++||..   ++++..+.+|...|++++|+|+|++|++++.
T Consensus       459 ~~~-------~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~---~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  528 (577)
T 2ymu_A          459 LLQ-------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPDGQTIASASD  528 (577)
T ss_dssp             EEE-------EEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT---SCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEE-------EEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC---CCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC
Confidence            211       346788999999999999999999999999999965   6788899999999999999999999999999


Q ss_pred             CCcEEEEeC
Q 009203          532 DLNIGLHKI  540 (540)
Q Consensus       532 dg~v~iw~l  540 (540)
                      ||.|+|||+
T Consensus       529 dg~v~lwd~  537 (577)
T 2ymu_A          529 DKTVKLWNR  537 (577)
T ss_dssp             TSEEEEECT
T ss_pred             cCEEEEEeC
Confidence            999999984

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-41  Score=334.99  Aligned_cols=296  Identities=16%  Similarity=0.234  Sum_probs=240.8

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccccc----------CCCCCCCCceeEEEecCCCeEE
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDC----------LSPKHRRWPEDIAWHPQGNSLF  290 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~----------~~~~h~~~V~~~~~~~~~~~l~  290 (540)
                      +|.+.|+|++|+|| |++||+|+ ++.++||++.+++....+......          ....+...|.+++|+|+|++|+
T Consensus        62 ~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            69999999999996 89999987 789999999988766555322100          0012334589999999999999


Q ss_pred             EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203          291 SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       291 s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                      ++    +.|+.|++||+.++   ..+..+.+   |...|.+++|+| ++.+|++|+.|++|++||++++++   ...+  
T Consensus       140 s~----~~d~~i~iwd~~~~---~~~~~~~~---h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~---~~~~--  203 (393)
T 1erj_A          140 TG----AEDRLIRIWDIENR---KIVMILQG---HEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQC---SLTL--  203 (393)
T ss_dssp             EE----ETTSCEEEEETTTT---EEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE---EEEE--
T ss_pred             EE----cCCCeEEEEECCCC---cEEEEEcc---CCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCee---EEEE--
Confidence            99    99999999999876   55666665   677899999999 999999999999999999998874   1222  


Q ss_pred             ccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeee--------ccCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203          371 NLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKH--------QIESKCMSVLPNPCDFNLFMVQTGTPGRQ  441 (540)
Q Consensus       371 ~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  441 (540)
                       .+...+.+++|+| ++.+|++++.||.|++||++++..+...        .+...+.++.|+|++   .+|++|+.|+.
T Consensus       204 -~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g---~~l~s~s~d~~  279 (393)
T 1erj_A          204 -SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG---QSVVSGSLDRS  279 (393)
T ss_dssp             -ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS---SEEEEEETTSE
T ss_pred             -EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC---CEEEEEeCCCE
Confidence             2667899999999 8999999999999999999998875543        345678999999987   68999999999


Q ss_pred             EEEEECCCCcceeee-----eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeE
Q 009203          442 LRLYDIRLRQTEIHA-----FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFK  516 (540)
Q Consensus       442 v~i~d~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~  516 (540)
                      |++||+++.......     ......+.+|...|.+++|+|++.+|++|+.||.|++||+.+  +.++..+.+|.+.|.+
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~--~~~~~~l~~h~~~v~~  357 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS--GNPLLMLQGHRNSVIS  357 (393)
T ss_dssp             EEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC--CeEEEEECCCCCCEEE
Confidence            999999864321110     001124467899999999999999999999999999999998  7788899999999999


Q ss_pred             EEEcC------CCCEEEEEEcCCcEEEEeC
Q 009203          517 AVWHY------SHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       517 l~~s~------~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++|++      ++++|++|+.||+|+||++
T Consensus       358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          358 VAVANGSSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence            99986      6789999999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-41  Score=324.02  Aligned_cols=305  Identities=16%  Similarity=0.203  Sum_probs=228.0

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+.+|.+.|++++|+|+   +||+|+.|++|+|||+..+...  ......  ..+|...|.+++|+|++++|+++    +
T Consensus         9 ~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~--~~~~~~--~~~h~~~v~~v~~sp~~~~las~----s   77 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFT--LIDVLD--ETAHKKAIRSVAWRPHTSLLAAG----S   77 (330)
T ss_dssp             EEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCE--EEEEEC--TTCCCSCEEEEEECTTSSEEEEE----E
T ss_pred             eeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeE--EEEEEe--cCCccCCEEEEEECCCCCEEEEE----e
Confidence            46799999999999984   9999999999999999875321  111110  12499999999999999999999    9


Q ss_pred             CCCeEEEEecCCCC----CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203          298 GDSQISVLNLNKTK----GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH  373 (540)
Q Consensus       298 ~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  373 (540)
                      .|+.|++||+....    ....+..+.+   |.+.|.+++|+| ++.+|++|+.|++|++||++....... ......+|
T Consensus        78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~---h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~-~~~~~~~h  152 (330)
T 2hes_X           78 FDSTVSIWAKEESADRTFEMDLLAIIEG---HENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYE-CISVLQEH  152 (330)
T ss_dssp             TTSCEEEEEC-------CCCEEEEEEC-------CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCE-EEEEECCC
T ss_pred             CCCcEEEEEcccCcCccccceeEEEEcC---CCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeE-EEEEeccC
Confidence            99999999996431    1234555554   678899999999 999999999999999999954321111 11223569


Q ss_pred             CcceeEEEeccCCCEEEEEeCCCeEEEEECCCC--Ceeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG--RADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      ...|.+++|+|++.+|++++.|++|++||..++  +++... .+...+.++.|+|++.. .+|++|+.|++|++||+...
T Consensus       153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCC
Confidence            999999999999999999999999999998876  344433 35678889999997322 58999999999999998754


Q ss_pred             cce-eeeeccccccC-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc-ccccccc-ceeEEEEcC--CCC
Q 009203          451 QTE-IHAFGWKQESS-ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ-SIRAHQK-RVFKAVWHY--SHP  524 (540)
Q Consensus       451 ~~~-~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~h~~-~i~~l~~s~--~~~  524 (540)
                      ... ...+.....+. .|...|.+++|++++ +|++++.||.|+|||...+....+. .+.+|.. .|++++|+|  +++
T Consensus       232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~  310 (330)
T 2hes_X          232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKT  310 (330)
T ss_dssp             CTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----C
T ss_pred             CccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCce
Confidence            210 00000111233 388899999999765 8999999999999999863112332 3457876 899999999  689


Q ss_pred             EEEEEEcCCcEEEEeC
Q 009203          525 LLISISSDLNIGLHKI  540 (540)
Q Consensus       525 ~l~s~~~dg~v~iw~l  540 (540)
                      +|++|+.||+|+||++
T Consensus       311 ~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          311 ILATGGDDGIVNFWSL  326 (330)
T ss_dssp             CEEEEETTSEEEEEEC
T ss_pred             EEEEecCCCcEEEEEe
Confidence            9999999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-40  Score=323.04  Aligned_cols=290  Identities=14%  Similarity=0.139  Sum_probs=242.2

Q ss_pred             CeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccc
Q 009203          147 SSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSL  221 (540)
Q Consensus       147 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~  221 (540)
                      ...++.+|...|.++.+.|...                               .+++++.|++|++|+..     +.+..
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~-------------------------------~l~s~s~Dg~v~vWd~~~~~~~~~~~~  104 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKR-------------------------------RIVSSSQDGKVIVWDSFTTNKEHAVTM  104 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSS-------------------------------EEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEecCCCCeEEEEEECCCCC-------------------------------EEEEEeCCCeEEEEECCCCCcceEEec
Confidence            3456789999999999998743                               57899999999999754     45778


Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      |...|.+++|+|+ +.+|++|+.|+.+++|++..........  ......+|...|.+++|+|++..|+++    +.|++
T Consensus       105 ~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~----s~D~~  177 (354)
T 2pbi_B          105 PCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAA--KKKSVAMHTNYLSACSFTNSDMQILTA----SGDGT  177 (354)
T ss_dssp             SSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCSGG--GCEEEEECSSCEEEEEECSSSSEEEEE----ETTSE
T ss_pred             CCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccccc--cceeeeccCCcEEEEEEeCCCCEEEEE----eCCCc
Confidence            9999999999996 9999999999999999987543211110  000114789999999999999999999    99999


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                      |++||+.++   ..+..+.+   |...|.+++|+|. ++.+|++|+.||.|++||++++++   ...  ..+|...|+++
T Consensus       178 v~lwd~~~~---~~~~~~~~---h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~---~~~--~~~h~~~v~~v  246 (354)
T 2pbi_B          178 CALWDVESG---QLLQSFHG---HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC---VQA--FETHESDVNSV  246 (354)
T ss_dssp             EEEEETTTC---CEEEEEEC---CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE---EEE--ECCCSSCEEEE
T ss_pred             EEEEeCCCC---eEEEEEcC---CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE---EEE--ecCCCCCeEEE
Confidence            999999986   45666665   6678999999883 368999999999999999999875   222  35699999999


Q ss_pred             EeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          381 AGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      +|+|++.+|++++.|++|++||++.+..+.....   ...+.++.|+|++   .+|++|+.|+.|++||+.++....   
T Consensus       247 ~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g---~~l~~g~~d~~i~vwd~~~~~~~~---  320 (354)
T 2pbi_B          247 RYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG---RLLFAGYNDYTINVWDVLKGSRVS---  320 (354)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS---SEEEEEETTSCEEEEETTTCSEEE---
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC---CEEEEEECCCcEEEEECCCCceEE---
Confidence            9999999999999999999999998876554433   2467789999987   799999999999999998776433   


Q ss_pred             ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                          .+.+|...|++++|+|+|++|++|+.||.|+||+
T Consensus       321 ----~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 ----ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ----EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ----EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence                3468999999999999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.5e-41  Score=331.30  Aligned_cols=302  Identities=15%  Similarity=0.167  Sum_probs=244.6

Q ss_pred             CeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccc
Q 009203          147 SSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSL  221 (540)
Q Consensus       147 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~  221 (540)
                      ....+.+|...|.++.+.|...                               .+++++.|++|++|+..     ..+.+
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~-------------------------------~l~s~s~D~~v~iWd~~~~~~~~~~~~  106 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKN-------------------------------WIVSASQDGRLIVWNALTSQKTHAIKL  106 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSS-------------------------------CEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EeecccccccEEEEEEEcCCCC-------------------------------EEEEEeCCCeEEEEECCCCccceEEec
Confidence            3456789999999999999753                               57889999999999764     55889


Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeecCCCCC
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDS  300 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~  300 (540)
                      |...|.+++|+|+ +.+|++|+.|+.|+||++.......... .......+|.+.|.+++|+|++ ..|+++    +.|+
T Consensus       107 h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~gh~~~v~~~~~~~~~~~~l~s~----s~D~  180 (380)
T 3iz6_a          107 HCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRDGNM-PVSRVLTGHKGYASSCQYVPDQETRLITG----SGDQ  180 (380)
T ss_dssp             CCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCCCSS-TTCCBCCCCSSCCCCCBCCSSSSSCEEEE----CTTS
T ss_pred             CCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCCCccccCCc-cceeeccCCCcceEEEEEecCCCCEEEEE----CCCC
Confidence            9999999999996 9999999999999999997643211100 0111126899999999999974 579999    9999


Q ss_pred             eEEEEecCCCCCceeEEeecC--CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          301 QISVLNLNKTKGRACVTFLDD--KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      +|++||+.++   ..+..+..  ...|...|.+++|++.++.+|++|+.|++|++||++....    ......+|.+.|+
T Consensus       181 ~i~~wd~~~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~----~~~~~~~h~~~v~  253 (380)
T 3iz6_a          181 TCVLWDVTTG---QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR----AVRTYHGHEGDIN  253 (380)
T ss_dssp             CEEEECTTTC---CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC----CCEEECCCSSCCC
T ss_pred             cEEEEEcCCC---cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc----ceEEECCcCCCeE
Confidence            9999999987   34444421  1346788999999876889999999999999999985431    1222356999999


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--------ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      +++|+|++.+|++++.||+|++||++++..+..+...        ..+.+++|+|++   .+|++|+.||.|++||+.++
T Consensus       254 ~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~g~~dg~i~vwd~~~~  330 (380)
T 3iz6_a          254 SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG---RLLFAGYSNGDCYVWDTLLA  330 (380)
T ss_dssp             EEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS---SEEEEECTTSCEEEEETTTC
T ss_pred             EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC---CEEEEEECCCCEEEEECCCC
Confidence            9999999999999999999999999998876554321        236789999988   79999999999999999877


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      +......   ....+|.+.|++++|+|+|.+|++|+.||.|+||++..
T Consensus       331 ~~~~~~~---~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          331 EMVLNLG---TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CEEEEEC---CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             ceEEEEe---cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            6543321   12357999999999999999999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=317.82  Aligned_cols=287  Identities=17%  Similarity=0.188  Sum_probs=242.1

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhccc
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSSL  221 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~~  221 (540)
                      ....+|...|.++++.|..+                           .--..+++++.|++|++|+..       ..+.|
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~---------------------------~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~g   78 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKK---------------------------ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG   78 (321)
T ss_dssp             EETTSSSSCEEEEEEC----------------------------------CEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred             eecccCCCcEEEEEEecCCC---------------------------CCCCEEEEEcCCCCEEEEECCCCCeeeeeeecc
Confidence            44568999999999987521                           001257889999999999753       24789


Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      |...|.+++|+|+ +.++++|+.|++|++||+.+++....+        ..|...+.+++|+|++++|+++    +.++.
T Consensus        79 h~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~~g----~~dg~  145 (321)
T 3ow8_A           79 HQLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKSI--------DAGPVDAWTLAFSPDSQYLATG----THVGK  145 (321)
T ss_dssp             CSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCTTCCCCEEECTTSSEEEEE----CTTSE
T ss_pred             CCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCEEEEE--------eCCCccEEEEEECCCCCEEEEE----cCCCc
Confidence            9999999999995 899999999999999999988766655        3667789999999999999999    99999


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      |++||+.++   .....+..   +...|.+++|+| ++++|++|+.||.|++||+++++.   ...  ..+|...|.+++
T Consensus       146 v~i~~~~~~---~~~~~~~~---~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~---~~~--~~~h~~~v~~l~  213 (321)
T 3ow8_A          146 VNIFGVESG---KKEYSLDT---RGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKL---LHT--LEGHAMPIRSLT  213 (321)
T ss_dssp             EEEEETTTC---SEEEEEEC---SSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE---EEE--ECCCSSCCCEEE
T ss_pred             EEEEEcCCC---ceeEEecC---CCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcE---EEE--EcccCCceeEEE
Confidence            999999986   33444443   456799999999 999999999999999999998864   222  356999999999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      |+|++++|++++.|+.|++||++++....... +...+.++.|+|++   .+|++++.|++|++||+.++.+..      
T Consensus       214 ~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~---~~l~s~s~D~~v~iwd~~~~~~~~------  284 (321)
T 3ow8_A          214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD---THFVSSSSDKSVKVWDVGTRTCVH------  284 (321)
T ss_dssp             ECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEE------
T ss_pred             EcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCEEEE------
Confidence            99999999999999999999999888766544 45678999999987   689999999999999999877543      


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                       .+.+|...|.+++|+|+|++|++++.||.|+|||..
T Consensus       285 -~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          285 -TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             -EECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             -EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence             345788999999999999999999999999999964

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.4e-40  Score=316.39  Aligned_cols=288  Identities=12%  Similarity=0.199  Sum_probs=245.9

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      .+|.+.|++++|+|+ +++|++++ ||.|++||+.+++....+....   ..+|...|.+++|+|++++|+++    +.|
T Consensus        48 ~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~----~~d  118 (337)
T 1gxr_A           48 LNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLD---CLNRDNYIRSCKLLPDGCTLIVG----GEA  118 (337)
T ss_dssp             ECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEE---CSCTTSBEEEEEECTTSSEEEEE----ESS
T ss_pred             ccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeeccc---ccCCCCcEEEEEEcCCCCEEEEE----cCC
Confidence            489999999999995 89999998 9999999998876433332111   13688999999999999999999    999


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      +.|++||+.++.. .....+..   |...|.+++|+| ++.+|++++.||.|++||+++++.   ..  ....|...|.+
T Consensus       119 ~~i~~~d~~~~~~-~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~---~~--~~~~~~~~i~~  188 (337)
T 1gxr_A          119 STLSIWDLAAPTP-RIKAELTS---SAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTL---VR--QFQGHTDGASC  188 (337)
T ss_dssp             SEEEEEECCCC---EEEEEEEC---SSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE---EE--EECCCSSCEEE
T ss_pred             CcEEEEECCCCCc-ceeeeccc---CCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCce---ee--eeecccCceEE
Confidence            9999999997632 23344443   567899999999 999999999999999999998764   22  22458899999


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      ++|+|++++|++++.||.|++||+++++.+........+.++.|+|++   .++++++.++.|++||+.+....      
T Consensus       189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~~~~i~~~~~~~~~~~------  259 (337)
T 1gxr_A          189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG---EWLAVGMESSNVEVLHVNKPDKY------  259 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTS---SEEEEEETTSCEEEEETTSSCEE------
T ss_pred             EEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCC---CEEEEEcCCCcEEEEECCCCCeE------
Confidence            999999999999999999999999999988888888889999999987   68999999999999999977632      


Q ss_pred             ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                        .+..|...|.+++|+|++++|++++.||.|++||+.+  ++.+. ...|...|.+++|+|++++|++++.||.|++|+
T Consensus       260 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~--~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          260 --QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--GASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             --EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEE-EEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             --EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC--CeEEE-EecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence              2356888999999999999999999999999999997  45443 345788999999999999999999999999998


Q ss_pred             C
Q 009203          540 I  540 (540)
Q Consensus       540 l  540 (540)
                      +
T Consensus       335 ~  335 (337)
T 1gxr_A          335 V  335 (337)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.9e-40  Score=313.51  Aligned_cols=292  Identities=14%  Similarity=0.235  Sum_probs=242.7

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------h
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------H  217 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------~  217 (540)
                      ..++.+|...|.++++.|..+                              ..+++++.|++|++|+..          .
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~------------------------------~~l~s~s~D~~v~~W~~~~~~~~~~~~~~   59 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQP------------------------------NLLLSASRDKTLISWKLTGDDQKFGVPVR   59 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCT------------------------------TEEEEEETTSEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEccccceEEEEEccCCCc------------------------------cEEEEecCCccEEEecCCCCCccccccce
Confidence            346779999999999988632                              257889999999999653          3


Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+.+|...|++++|+|| +.+|++|+.|++|+|||+.+++....+        .+|...|.+++|+|++.+|+++    +
T Consensus        60 ~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~s~----s  126 (319)
T 3frx_A           60 SFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF--------VGHKSDVMSVDIDKKASMIISG----S  126 (319)
T ss_dssp             EEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECTTSCEEEEE----E
T ss_pred             EEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCeeEEE--------ccCCCcEEEEEEcCCCCEEEEE----e
Confidence            47899999999999996 999999999999999999998766655        5899999999999999999999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-----CCCEEEEEecCCcEEEEecCCCCCccccceeeccc
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-----ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL  372 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  372 (540)
                      .|+.|++||+..    .++..+.+   |...|.+++|+|.     ++..|++++.|+.|++||+++.+.     .....+
T Consensus       127 ~D~~i~vwd~~~----~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----~~~~~~  194 (319)
T 3frx_A          127 RDKTIKVWTIKG----QCLATLLG---HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-----EADFIG  194 (319)
T ss_dssp             TTSCEEEEETTS----CEEEEECC---CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE-----EEEECC
T ss_pred             CCCeEEEEECCC----CeEEEEec---cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh-----heeecC
Confidence            999999999974    34555554   6778999999983     234899999999999999998763     223356


Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      |...|.+++|+|+|++|++++.||.|++||+.+++.+........+.+++|+|++   .++++++. +.+++|++.....
T Consensus       195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~---~~la~~~~-~~i~v~~~~~~~~  270 (319)
T 3frx_A          195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR---YWLAAATA-TGIKVFSLDPQYL  270 (319)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSS---SEEEEEET-TEEEEEEETTEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCC---CEEEEEcC-CCcEEEEeCcCee
Confidence            9999999999999999999999999999999999988887778889999999987   57777664 5699999986543


Q ss_pred             eeeeec-cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          453 EIHAFG-WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       453 ~~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ...... .......|...+.+++|+|||++|++|+.||.|+|||+.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             eeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            222111 1112234667899999999999999999999999999975

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.3e-39  Score=314.39  Aligned_cols=292  Identities=16%  Similarity=0.231  Sum_probs=237.6

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      .+|+||.+.|++|+|+|+++++||||+.||+|+|||+...+........   ...+|...|.+++|+|++++|+++    
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~---~l~~h~~~V~~~~~s~dg~~l~s~----  104 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR---ALRGHSHFVSDVVISSDGQFALSG----  104 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE---EECCCSSCEEEEEECTTSSEEEEE----
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE---EEeCCCCCEEEEEECCCCCEEEEE----
Confidence            4578999999999999976889999999999999999876543322111   115899999999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|+.|++|+....   ........   +...+..+.+++ ++.+|++|+.|+.+++||+.....    ......+|...
T Consensus       105 ~~d~~i~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~----~~~~~~~~~~~  173 (340)
T 4aow_A          105 SWDGTLRLWDLTTG---TTTRRFVG---HTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK----YTVQDESHSEW  173 (340)
T ss_dssp             ETTSEEEEEETTTT---EEEEEEEC---CSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE----EEECSSSCSSC
T ss_pred             cccccceEEeeccc---ceeeeecC---CCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce----EEEEeccccCc
Confidence            99999999999875   33333332   356688899999 999999999999999999987652    34444678999


Q ss_pred             eeEEEeccCC--CEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          377 VMGVAGMQQK--QIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       377 v~~l~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      +..++|++++  .++++++.|+.|++||+++++.+.... +...+.++.|+|++   .+|++|+.|+.|++||+++....
T Consensus       174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~Dg~i~iwd~~~~~~~  250 (340)
T 4aow_A          174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG---SLCASGGKDGQAMLWDLNEGKHL  250 (340)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTCEEEEEETTTTEEE
T ss_pred             ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC---CEEEEEeCCCeEEEEEeccCcee
Confidence            9999998764  578899999999999999988876643 45778899999987   69999999999999999987654


Q ss_pred             eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc---------cccccccceeEEEEcCCCC
Q 009203          454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ---------SIRAHQKRVFKAVWHYSHP  524 (540)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~---------~~~~h~~~i~~l~~s~~~~  524 (540)
                      ...        .+...|.++.|+|++.++ +++.|+.|++||+..  ...+.         ...+|...|++++|+|+|+
T Consensus       251 ~~~--------~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~  319 (340)
T 4aow_A          251 YTL--------DGGDIINALCFSPNRYWL-CAATGPSIKIWDLEG--KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ  319 (340)
T ss_dssp             EEE--------ECSSCEEEEEECSSSSEE-EEEETTEEEEEETTT--TEEEEEECCC-------CCCCCEEEEEECTTSS
T ss_pred             eee--------cCCceEEeeecCCCCcee-eccCCCEEEEEECCC--CeEEEeccccceeeeccCCCCCEEEEEECCCCC
Confidence            322        234579999999987655 555799999999986  33322         3346888999999999999


Q ss_pred             EEEEEEcCCcEEEEeC
Q 009203          525 LLISISSDLNIGLHKI  540 (540)
Q Consensus       525 ~l~s~~~dg~v~iw~l  540 (540)
                      +|++|+.||.|+|||+
T Consensus       320 ~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          320 TLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             EEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCEEEEEeC
Confidence            9999999999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.9e-40  Score=315.82  Aligned_cols=250  Identities=13%  Similarity=0.156  Sum_probs=206.4

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      ..|...|++++|+|| + .|++|+.||+|+|||+.+++.........    .+|.+.|++++|+|+|++|+++    +.|
T Consensus        79 ~~~~~~v~~~~~s~d-~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~----~~H~~~V~~v~~spdg~~l~sg----s~d  148 (344)
T 4gqb_B           79 VQTEAGVADLTWVGE-R-GILVASDSGAVELWELDENETLIVSKFCK----YEHDDIVSTVSVLSSGTQAVSG----SKD  148 (344)
T ss_dssp             EEESSCEEEEEEETT-T-EEEEEETTSEEEEEEECTTSSCEEEEEEE----ECCSSCEEEEEECTTSSEEEEE----ETT
T ss_pred             eccCCCEEEEEEeCC-C-eEEEEECCCEEEEEeccCCCceeEeeccc----cCCCCCEEEEEECCCCCEEEEE----eCC
Confidence            346688999999995 4 68899999999999999987665543322    4899999999999999999999    999


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      ++|++||+.++   .++..+.+   |.+.|.+++|+|.+..+|++|+.|++|++||+++++.   ...+....+...+.+
T Consensus       149 ~~i~iwd~~~~---~~~~~~~~---h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~~~~~~~  219 (344)
T 4gqb_B          149 ICIKVWDLAQQ---VVLSSYRA---HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---ASQIGCSAPGYLPTS  219 (344)
T ss_dssp             SCEEEEETTTT---EEEEEECC---CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---EEECC----CCCEEE
T ss_pred             CeEEEEECCCC---cEEEEEcC---cCCceEEEEecCCCCCceeeeccccccccccccccce---eeeeecceeecccee
Confidence            99999999986   66777775   6788999999994446889999999999999999875   333333446678999


Q ss_pred             EEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          380 VAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       380 l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      ++|+|+ +++|++|+.||.|++||+++++++.... +...+.+++|+|++.  .+|++|+.|++|+|||+.+++..    
T Consensus       220 ~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~--~~lasgs~D~~i~vwd~~~~~~~----  293 (344)
T 4gqb_B          220 LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSV--PFLASLSEDCSLAVLDSSLSELF----  293 (344)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSS--CCEEEEETTSCEEEECTTCCEEE----
T ss_pred             eeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCcEE----
Confidence            999984 5788999999999999999998877654 467789999999863  37999999999999999877532    


Q ss_pred             ccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccC
Q 009203          458 GWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRY  498 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~  498 (540)
                          .+.+|...|++++|+|++. +|++|+.||+|++|++.+
T Consensus       294 ----~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          294 ----RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             ----EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             ----EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence                2368999999999999986 577999999999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4e-40  Score=318.36  Aligned_cols=298  Identities=15%  Similarity=0.209  Sum_probs=239.6

Q ss_pred             CeeeecCCcc-eeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc--------h
Q 009203          147 SSTQASPAAH-SIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN--------H  217 (540)
Q Consensus       147 ~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~--------~  217 (540)
                      .+..+.+|.. .|.++++.|...                               .+++++.|++|++|+..        .
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~-------------------------------~las~~~D~~i~iw~~~~~~~~~~~~   55 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGT-------------------------------LLASCGGDRRIRIWGTEGDSWICKSV   55 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSS-------------------------------CEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EeeeecCCCCCcEEEEEECCCCC-------------------------------EEEEEcCCCeEEEEEcCCCcceeeee
Confidence            3456778887 888999988743                               57888999999999754        1


Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC--cceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS--GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      +..+|.+.|++++|+|+ +.+|++|+.|++|+||++..+..  ...+        .+|...|.+++|+|++++|+++   
T Consensus        56 ~~~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~--------~~h~~~v~~v~~sp~~~~l~s~---  123 (345)
T 3fm0_A           56 LSEGHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTL--------EGHENEVKSVAWAPSGNLLATC---  123 (345)
T ss_dssp             ECSSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEE--------CCCSSCEEEEEECTTSSEEEEE---
T ss_pred             eccccCCcEEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEc--------cCCCCCceEEEEeCCCCEEEEE---
Confidence            24799999999999996 99999999999999999987642  2222        5899999999999999999999   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                       +.|+.|++||+.++....++..+..   |...|.+++|+| ++.+|++|+.|+.|++||++++..   .......+|..
T Consensus       124 -s~D~~v~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~  195 (345)
T 3fm0_A          124 -SRDKSVWVWEVDEEDEYECVSVLNS---HTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDW---VCCATLEGHES  195 (345)
T ss_dssp             -ETTSCEEEEEECTTSCEEEEEEECC---CCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS
T ss_pred             -ECCCeEEEEECCCCCCeEEEEEecC---cCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC
Confidence             9999999999987655455666664   677899999999 999999999999999999987652   12233467999


Q ss_pred             ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe---------------eeee--ccCccEEEEeecCCCCCceEEEEEcC
Q 009203          376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA---------------DFKH--QIESKCMSVLPNPCDFNLFMVQTGTP  438 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~---------------~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~  438 (540)
                      .|++++|+|+|++|++++.|++|++||......               +...  .+...+.++.|+|++   ..|++++.
T Consensus       196 ~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~l~s~~~  272 (345)
T 3fm0_A          196 TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT---GALATACG  272 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT---CCEEEEET
T ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC---CEEEEEeC
Confidence            999999999999999999999999999643211               1111  145678899999987   58999999


Q ss_pred             CCeEEEEECCCCcceee-eec-cccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccC
Q 009203          439 GRQLRLYDIRLRQTEIH-AFG-WKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       439 dg~v~i~d~~~~~~~~~-~~~-~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~  498 (540)
                      |+.|++|+......... .+. ......+|...|++++|+|++ .+||+|+.||.|++|++..
T Consensus       273 d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          273 DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence            99999999876532110 000 011345799999999999998 5999999999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.8e-40  Score=324.63  Aligned_cols=295  Identities=12%  Similarity=0.093  Sum_probs=246.2

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC------CcceeecccccCCCCCCCCceeEEEecC----C
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG------SGASLLSTTDCLSPKHRRWPEDIAWHPQ----G  286 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~------~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~  286 (540)
                      .++.+|.+.|++++|+|   .+|++|+.||.|+||++..++      ....+        .+|...|.+++|+|+    +
T Consensus        10 ~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~g   78 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH--------FVHKSGLHHVDVLQAIERDA   78 (397)
T ss_dssp             EESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE--------ECCTTCEEEEEEEEEEETTT
T ss_pred             hhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEE--------ecCCCcEEEEEEecccccCC
Confidence            45789999999999997   599999999999999999877      33333        478999999999999    9


Q ss_pred             ---CeEEEEeecCCCCCeEEEEecCCCCCc--eeEEeecCCCCc--ccceeEEEEe----CCCCCE-EEEEecCCcEEEE
Q 009203          287 ---NSLFSAHTADSGDSQISVLNLNKTKGR--ACVTFLDDKPHV--KGIINSIIFL----PWENPC-FATGGSDHAVVLW  354 (540)
Q Consensus       287 ---~~l~s~~~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~--~~~v~~~~~~----p~~~~~-l~s~~~dg~i~iw  354 (540)
                         .+|+++    +.|+.|++||+.++...  .....+..+..+  ...|.+++|+    | ++.+ |++++.||.|++|
T Consensus        79 ~~~~~l~s~----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iw  153 (397)
T 1sq9_A           79 FELCLVATT----SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIW  153 (397)
T ss_dssp             EEEEEEEEE----ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEE
T ss_pred             ccccEEEEE----cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEE
Confidence               999999    99999999999876321  114555543222  5789999999    9 8999 9999999999999


Q ss_pred             ecCC------CCCccccc--eeec-----ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------
Q 009203          355 SERD------AEDSWKPK--ALHR-----NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-------  414 (540)
Q Consensus       355 d~~~------~~~~~~~~--~~~~-----~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------  414 (540)
                      |+.+      +....-..  .+..     ..|...|.+++|+|++ +|++++.||.|++||+++++.+.....       
T Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~  232 (397)
T 1sq9_A          154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN  232 (397)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred             eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence            9998      55422000  2221     4488899999999999 999999999999999999888777665       


Q ss_pred             CccEEEEeecCCCCCceEEEEEcCC---CeEEEEECCCCcceeeeeccccccCc-------------cccCeEEEEEcCC
Q 009203          415 ESKCMSVLPNPCDFNLFMVQTGTPG---RQLRLYDIRLRQTEIHAFGWKQESSE-------------SQSALINQSWSPD  478 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~sp~  478 (540)
                      ...+.++.|+|++   .+|++++.|   +.|++||+.+++....       +.+             |...|.+++|+|+
T Consensus       233 ~~~i~~i~~~~~~---~~l~~~~~d~~~g~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  302 (397)
T 1sq9_A          233 SNSIRSVKFSPQG---SLLAIAHDSNSFGCITLYETEFGERIGS-------LSVPTHSSQASLGEFAHSSWVMSLSFNDS  302 (397)
T ss_dssp             CCCEEEEEECSST---TEEEEEEEETTEEEEEEEETTTCCEEEE-------ECBC--------CCBSBSSCEEEEEECSS
T ss_pred             CCccceEEECCCC---CEEEEEecCCCCceEEEEECCCCcccce-------eccCcccccccccccccCCcEEEEEECCC
Confidence            7889999999987   689999999   9999999998765432       234             8899999999999


Q ss_pred             CCEEEEEeCCCcEEEEeccCCCCccccccc------cc---------------ccceeEEEEcCCC----------CEEE
Q 009203          479 GLYITSGSADPVIHLFDIRYSANKPSQSIR------AH---------------QKRVFKAVWHYSH----------PLLI  527 (540)
Q Consensus       479 g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~------~h---------------~~~i~~l~~s~~~----------~~l~  527 (540)
                      +++|++++.||.|++||+.+  ++++..+.      +|               ...|++++|+|++          ++|+
T Consensus       303 ~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~  380 (397)
T 1sq9_A          303 GETLCSAGWDGKLRFWDVKT--KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC  380 (397)
T ss_dssp             SSEEEEEETTSEEEEEETTT--TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred             CCEEEEEeCCCeEEEEEcCC--CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence            99999999999999999997  67788887      77               8999999999998          7999


Q ss_pred             EEEcCCcEEEEeC
Q 009203          528 SISSDLNIGLHKI  540 (540)
Q Consensus       528 s~~~dg~v~iw~l  540 (540)
                      +++.||.|++|++
T Consensus       381 s~~~dg~i~iw~~  393 (397)
T 1sq9_A          381 CVCLDRSIRWFRE  393 (397)
T ss_dssp             EEETTTEEEEEEE
T ss_pred             EecCCCcEEEEEc
Confidence            9999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-40  Score=325.07  Aligned_cols=318  Identities=14%  Similarity=0.134  Sum_probs=261.9

Q ss_pred             CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEecc----c--h---------
Q 009203          153 PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTS----N--H---------  217 (540)
Q Consensus       153 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~----~--~---------  217 (540)
                      .|...|.++.+.|...                              ..+++++.|+.|++|+.    .  .         
T Consensus        43 ~~~~~v~~~~~s~~~~------------------------------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~   92 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDE------------------------------SILAYGEKNSVARLARIVETDQEGKKYWKLTIIA   92 (425)
T ss_dssp             EECSCCSEEEECSSCT------------------------------TEEEEEETBTEEEEEEEEEC------CEEEEEEE
T ss_pred             eccCceEEEEECCCCC------------------------------cEEEEecCCceEEEEEEecccCCccccccccccc
Confidence            4557888888888742                              14666777888888876    2  1         


Q ss_pred             ----hcc------cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC
Q 009203          218 ----VSS------LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN  287 (540)
Q Consensus       218 ----~~~------~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~  287 (540)
                          .+.      +|.+.|++++|+|+ +.+|++|+.||.|++|| .+++....+        .+|...|.+++|+|+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~~-~~~~~~~~~--------~~~~~~v~~~~~~~~~~  162 (425)
T 1r5m_A           93 ELRHPFALSASSGKTTNQVTCLAWSHD-GNSIVTGVENGELRLWN-KTGALLNVL--------NFHRAPIVSVKWNKDGT  162 (425)
T ss_dssp             EEECCCCCC------CBCEEEEEECTT-SSEEEEEETTSCEEEEE-TTSCEEEEE--------CCCCSCEEEEEECTTSS
T ss_pred             cccccccccccccCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEe-CCCCeeeec--------cCCCccEEEEEECCCCC
Confidence                111      26889999999995 99999999999999999 444444444        57899999999999999


Q ss_pred             eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccc---------------eeEEEEeCCCCCEEEEEecCCcEE
Q 009203          288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGI---------------INSIIFLPWENPCFATGGSDHAVV  352 (540)
Q Consensus       288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~p~~~~~l~s~~~dg~i~  352 (540)
                      +|+++    +.|+.|++||+.++   ..+..+..   +...               +.+++|+| + ..+++++.||.|+
T Consensus       163 ~l~~~----~~d~~i~iwd~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~  230 (425)
T 1r5m_A          163 HIISM----DVENVTILWNVISG---TVMQHFEL---KETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIF  230 (425)
T ss_dssp             EEEEE----ETTCCEEEEETTTT---EEEEEECC---C---------------CCCBSCCEEEE-T-TEEEEECGGGCEE
T ss_pred             EEEEE----ecCCeEEEEECCCC---cEEEEeec---cccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEE
Confidence            99999    99999999999876   44555544   2233               88999998 5 4688999999999


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCce
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  431 (540)
                      +||+.++..   ...+  ..|...|.+++|+|++++|++++.||.|++||+++++.+.... ....+.++.|+|++    
T Consensus       231 ~~d~~~~~~---~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~----  301 (425)
T 1r5m_A          231 VYQITEKTP---TGKL--IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD----  301 (425)
T ss_dssp             EEETTCSSC---SEEE--CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT----
T ss_pred             EEEcCCCce---eeee--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC----
Confidence            999998864   2222  4588999999999999999999999999999999888766654 56788999999976    


Q ss_pred             EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc---------
Q 009203          432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK---------  502 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~---------  502 (540)
                      ++++++.|+.|++||+.++....       .+..|...|.+++|+|++++|++++.||.|++||+.+  ..         
T Consensus       302 ~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~  372 (425)
T 1r5m_A          302 KVISCSMDGSVRLWSLKQNTLLA-------LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK--LNSKSRSLYGN  372 (425)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEE-------EEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH--HHC--------
T ss_pred             EEEEEeCCCcEEEEECCCCcEeE-------ecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC--Cccceeeeecc
Confidence            89999999999999999876433       3346788999999999999999999999999999987  44         


Q ss_pred             -----------cccccccccc--ceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          503 -----------PSQSIRAHQK--RVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       503 -----------~~~~~~~h~~--~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                                 ++..+.+|..  .|++++|+|++++|++++.||.|++|++
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          373 RDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             ------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             cccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence                       6788888876  9999999999999999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8.1e-40  Score=321.39  Aligned_cols=294  Identities=14%  Similarity=0.118  Sum_probs=239.7

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~  296 (540)
                      .+.+|.+.|++++|+|++..+|++|+.||.|+|||+.+++....+..      .+|...|.+++|+| ++.+|+++    
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~----  137 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG------MGPGDAITGMKFNQFNTNQLFVS----  137 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC------CSTTCBEEEEEEETTEEEEEEEE----
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec------CCcCCceeEEEeCCCCCCEEEEE----
Confidence            35799999999999996338999999999999999998775544421      37999999999999 77899999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|+.|++||+.+    ..+..+.....+...|.+++|+| ++.+|++|+.|+.|++||++ ++.   ...  ...|...
T Consensus       138 ~~d~~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~---~~~--~~~h~~~  206 (383)
T 3ei3_B          138 SIRGATTLRDFSG----SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHE---IFK--EKLHKAK  206 (383)
T ss_dssp             ETTTEEEEEETTS----CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCE---EEE--EECSSSC
T ss_pred             eCCCEEEEEECCC----CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCE---EEE--eccCCCc
Confidence            9999999999985    33444544444567899999999 99999999999999999995 332   223  3469999


Q ss_pred             eeEEEeccCCC-EEEEEeCCCeEEEEECCC----CCeeeeeccCccEEEEeecC-CCCCceEEEEEcCCCeEEEEECCCC
Q 009203          377 VMGVAGMQQKQ-IVLSAGADKRIIGFDAGV----GRADFKHQIESKCMSVLPNP-CDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       377 v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      |.+++|+|++. +|++++.|+.|++||+++    +..+........+.++.|+| ++   .+|++++.|+.|++||++++
T Consensus       207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDS---TKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTS---CEEEEEESSSEEEEEETTBT
T ss_pred             EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCC---CEEEEEcCCCcEEEEECCCC
Confidence            99999999998 999999999999999998    55666667788999999999 76   68999999999999999988


Q ss_pred             cceeeeeccccccCcccc----------CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc--cccceeEEE
Q 009203          451 QTEIHAFGWKQESSESQS----------ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA--HQKRVFKAV  518 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~----------~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--h~~~i~~l~  518 (540)
                      .......++......|..          .+..++|+|+|++  +|+.||.|+|||+.+  ++.+..+.+  |...+..++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~--~~~~~~l~~~~~~~~~~~~~  359 (383)
T 3ei3_B          284 SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS--GGLVHQLRDPNAAGIISLNK  359 (383)
T ss_dssp             TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT--CCEEEEECBTTBCSCCCEEE
T ss_pred             ccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC--CceeeeecCCCCCceEEEEE
Confidence            765444333222223333          3444666677666  777999999999998  677888876  567788889


Q ss_pred             EcCCCCEEEEEEcCCcEEEEeC
Q 009203          519 WHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       519 ~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |+|++++|++|+ ||.|+|||+
T Consensus       360 ~s~~g~~l~s~s-d~~i~iw~~  380 (383)
T 3ei3_B          360 FSPTGDVLASGM-GFNILIWNR  380 (383)
T ss_dssp             ECTTSSEEEEEE-TTEEEEEEC
T ss_pred             EecCccEEEEec-CCcEEEEec
Confidence            999999999997 999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.9e-39  Score=305.73  Aligned_cols=287  Identities=15%  Similarity=0.174  Sum_probs=241.6

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccc
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLH  222 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h  222 (540)
                      ...+.+|...|.++++.|..+                               .+++++.|++|++|+..     ..+.+|
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~-------------------------------~l~s~~~dg~v~lWd~~~~~~~~~~~~~   54 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEP-------------------------------WVLTTLYSGRVELWNYETQVEVRSIQVT   54 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSS-------------------------------EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEeecCCCCceEEEEECCCCC-------------------------------EEEEEcCCCcEEEEECCCCceeEEeecc
Confidence            456778999999999999854                               57788899999999765     457899


Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ..+|.+++|+|+ +++|++|+.|++|++||+.+++....+        .+|...|.+++|+|++++|+++    +.|++|
T Consensus        55 ~~~v~~~~~~~~-~~~l~s~s~d~~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~sg----s~D~~v  121 (304)
T 2ynn_A           55 ETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDF--------EAHPDYIRSIAVHPTKPYVLSG----SDDLTV  121 (304)
T ss_dssp             SSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECSSSSEEEEE----ETTSCE
T ss_pred             CCcEEEEEEeCC-CCEEEEECCCCEEEEEECCCCcEEEEE--------eCCCCcEEEEEEcCCCCEEEEE----CCCCeE
Confidence            999999999995 999999999999999999998876666        5899999999999999999999    999999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      ++||+.++  ......+.+   |...|.+++|+|.++.+|++|+.|++|++||++.+..    ......+|...+..+.|
T Consensus       122 ~lWd~~~~--~~~~~~~~~---h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~  192 (304)
T 2ynn_A          122 KLWNWENN--WALEQTFEG---HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQERGVNYVDY  192 (304)
T ss_dssp             EEEEGGGT--TEEEEEECC---CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC----SEEEECCCTTCEEEEEE
T ss_pred             EEEECCCC--cchhhhhcc---cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc----cceeccCCcCcEEEEEE
Confidence            99999875  344555654   6788999999996788999999999999999988764    22222456778999999


Q ss_pred             cc--CCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          383 MQ--QKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       383 s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      +|  ++.+|++++.|+.|++||+++++++.... +...+.++.|+|++   .+|++|+.||+|++||+.+.+...     
T Consensus       193 ~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~s~Dg~i~iWd~~~~~~~~-----  264 (304)
T 2ynn_A          193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL---PIIISGSEDGTLKIWNSSTYKVEK-----  264 (304)
T ss_dssp             CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTCCEEE-----
T ss_pred             EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC---CEEEEEcCCCeEEEEECCCCceee-----
Confidence            76  77899999999999999999998877654 45778899999987   689999999999999999877533     


Q ss_pred             ccccCccccCeEEEEEcCCCC--EEEEEeCCCcEEEEeccC
Q 009203          460 KQESSESQSALINQSWSPDGL--YITSGSADPVIHLFDIRY  498 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~--~l~sg~~dg~i~iwd~~~  498 (540)
                        .+..|...+.+++|+|++.  ++++|+.|| +.+|++..
T Consensus       265 --~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          265 --TLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             --EECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             --eccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence              3456778999999999875  577877666 77888764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-41  Score=332.81  Aligned_cols=314  Identities=11%  Similarity=0.111  Sum_probs=246.7

Q ss_pred             CCCCeEEEeccc-------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc
Q 009203          205 ASPATIHCHTSN-------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP  277 (540)
Q Consensus       205 ~~d~~i~~~~~~-------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V  277 (540)
                      +.|+.|++|+..       .....|...|++++|+|+ +.+|++|+.||.|++|++.............    .+|...|
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~----~~h~~~v  116 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARF----SNHSSSV  116 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEEC----CCSSSCC
T ss_pred             CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhc----cCCccce
Confidence            789999999764       113468999999999996 8999999999999999998732111111111    5899999


Q ss_pred             eeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCce---eEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          278 EDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGRA---CVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       278 ~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      .+++|+|+ +.+|+++    +.|+.|++||+.++....   ....+.....|...|.+++|+|..+.+|++++.||.|++
T Consensus       117 ~~~~~~~~~~~~l~s~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~i  192 (416)
T 2pm9_A          117 KTVKFNAKQDNVLASG----GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI  192 (416)
T ss_dssp             CEEEECSSSTTBEEEE----CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEE
T ss_pred             EEEEEcCCCCCEEEEE----cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEE
Confidence            99999998 8899999    999999999999764100   111222222467889999999933889999999999999


Q ss_pred             EecCCCCCccccceeec----ccCCcceeEEEeccCC-CEEEEEeCCC---eEEEEECCCC-Ceeeee--ccCccEEEEe
Q 009203          354 WSERDAEDSWKPKALHR----NLHSSAVMGVAGMQQK-QIVLSAGADK---RIIGFDAGVG-RADFKH--QIESKCMSVL  422 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~----~~~~~~v~~l~~s~~~-~~l~~~~~dg---~i~iwd~~~~-~~~~~~--~~~~~~~~~~  422 (540)
                      ||+++++..   ..+..    .+|...|.+++|+|++ .++++++.|+   .|++||++++ ..+...  .+...+.++.
T Consensus       193 wd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~  269 (416)
T 2pm9_A          193 WDLKAKKEV---IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLD  269 (416)
T ss_dssp             EETTTTEEE---EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEE
T ss_pred             EECCCCCcc---eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEE
Confidence            999987642   22221    1127889999999997 6899999998   9999999986 444444  3667899999


Q ss_pred             ecC-CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeccCCC
Q 009203          423 PNP-CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG-LYITSGSADPVIHLFDIRYSA  500 (540)
Q Consensus       423 ~~~-~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~dg~i~iwd~~~~~  500 (540)
                      |+| ++   .+|++++.|+.|++||+.+++...       .+.+|...|++++|+|++ .+|++++.||.|++||+....
T Consensus       270 ~s~~~~---~~l~s~~~dg~v~~wd~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          270 WCHQDE---HLLLSSGRDNTVLLWNPESAEQLS-------QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             ECSSCS---SCEEEEESSSEEEEECSSSCCEEE-------EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             eCCCCC---CeEEEEeCCCCEEEeeCCCCccce-------eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            999 55   689999999999999999876533       345788899999999999 899999999999999998732


Q ss_pred             Ccccc---------------------------------cccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          501 NKPSQ---------------------------------SIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       501 ~~~~~---------------------------------~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .....                                 ....|..++.+++|+|+|++|++++.||.|+||++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~  412 (416)
T 2pm9_A          340 NTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP  412 (416)
T ss_dssp             CSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred             CCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence            11110                                 01116678889999999999999999999999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.7e-40  Score=320.35  Aligned_cols=302  Identities=15%  Similarity=0.162  Sum_probs=240.7

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeC---CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEE
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSAL---DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFS  291 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s  291 (540)
                      ++.+|.+.|++++|+|++..++++|+.   ||.|+|||+.+++......       .+|...|.+++|+|+   +.+|++
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~l~~   85 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE-------IEKAKPIKCGTFGATSLQQRYLAT   85 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE-------EEESSCEEEEECTTCCTTTCCEEE
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee-------ecccCcEEEEEEcCCCCCCceEEE
Confidence            457899999999999974467777776   9999999999876433322       267889999999998   699999


Q ss_pred             EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE------eCCCCCEEEEEecCCcEEEEecCCCCCcccc
Q 009203          292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF------LPWENPCFATGGSDHAVVLWSERDAEDSWKP  365 (540)
Q Consensus       292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  365 (540)
                      +    +.|+.|++||+.++.  ..+..+..   |...|.+++|      +| ++.+|++++.||.|++||+.++...  .
T Consensus        86 ~----~~dg~i~iwd~~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~--~  153 (357)
T 3i2n_A           86 G----DFGGNLHIWNLEAPE--MPVYSVKG---HKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDP--V  153 (357)
T ss_dssp             E----ETTSCEEEECTTSCS--SCSEEECC---CSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSC--S
T ss_pred             e----cCCCeEEEEeCCCCC--ccEEEEEe---cccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCc--c
Confidence            9    999999999999863  24555554   6788999965      57 8999999999999999999987621  1


Q ss_pred             ceeec--ccCCcceeEEE----eccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCC
Q 009203          366 KALHR--NLHSSAVMGVA----GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPG  439 (540)
Q Consensus       366 ~~~~~--~~~~~~v~~l~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  439 (540)
                      ..+..  ..+...+.+++    |+|++.+|++++.||.|++||+++++..........+.++.|+|.+..+.++++++.|
T Consensus       154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  233 (357)
T 3i2n_A          154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE  233 (357)
T ss_dssp             EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred             eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence            22211  11234888998    7889999999999999999999999887777778899999999932112689999999


Q ss_pred             CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccCCCC-----------------
Q 009203          440 RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRYSAN-----------------  501 (540)
Q Consensus       440 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~~~~-----------------  501 (540)
                      |.|++||+++........  .....+|...|++++|+|++. +|++|+.||.|++||+.....                 
T Consensus       234 g~i~i~d~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~  311 (357)
T 3i2n_A          234 GKFHVFDMRTQHPTKGFA--SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV  311 (357)
T ss_dssp             TEEEEEEEEEEETTTEEE--EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred             CeEEEEeCcCCCccccee--eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence            999999998755322111  002347899999999999998 899999999999999986321                 


Q ss_pred             cccccccccccceeEEEEcCCCCEEE-EEEcCCcEEEEeC
Q 009203          502 KPSQSIRAHQKRVFKAVWHYSHPLLI-SISSDLNIGLHKI  540 (540)
Q Consensus       502 ~~~~~~~~h~~~i~~l~~s~~~~~l~-s~~~dg~v~iw~l  540 (540)
                      ..+..+.+|...|++++|+|++++|+ +++.||.|+|||+
T Consensus       312 ~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~  351 (357)
T 3i2n_A          312 SLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV  351 (357)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             ceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence            24667788999999999999999988 8999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.1e-39  Score=343.28  Aligned_cols=291  Identities=16%  Similarity=0.202  Sum_probs=237.8

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+.+|.+.|++|+|+|+++.+|+||+.|++|+||++............   ...+|...|.+++|+|++++|+++    +
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~---~~~~h~~~v~~v~~s~~g~~l~sg----s  449 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR---RLTGHSHFVEDVVLSSDGQFALSG----S  449 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEE---EEECCSSCEEEEEECTTSSEEEEE----E
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccc---eecCCCCcEEEEEECCCCCEEEEE----e
Confidence            468999999999999977789999999999999999875432111100   015899999999999999999999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee--ecccCCc
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL--HRNLHSS  375 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~  375 (540)
                      .|+.|++||+.++   .....+.+   |...|.+++|+| ++.+|++|+.|++|++||+.....    ..+  ...+|..
T Consensus       450 ~Dg~v~vwd~~~~---~~~~~~~~---h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~----~~~~~~~~~h~~  518 (694)
T 3dm0_A          450 WDGELRLWDLAAG---VSTRRFVG---HTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECK----YTISEGGEGHRD  518 (694)
T ss_dssp             TTSEEEEEETTTT---EEEEEEEC---CSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE----EEECSSTTSCSS
T ss_pred             CCCcEEEEECCCC---cceeEEeC---CCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcc----eeeccCCCCCCC
Confidence            9999999999986   55666654   678899999999 999999999999999999865432    111  1246889


Q ss_pred             ceeEEEeccCC--CEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          376 AVMGVAGMQQK--QIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       376 ~v~~l~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      .|.+++|+|++  ..|++++.|+.|++||+++++...... +...+.++.|+|++   .+|++|+.||.|++||+.++..
T Consensus       519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg---~~l~sg~~Dg~i~iwd~~~~~~  595 (694)
T 3dm0_A          519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG---SLCASGGKDGVVLLWDLAEGKK  595 (694)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---SEEEEEETTSBCEEEETTTTEE
T ss_pred             cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCce
Confidence            99999999986  589999999999999999988766543 56788999999987   7999999999999999998775


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-------------------ccc
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-------------------QKR  513 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-------------------~~~  513 (540)
                      ...       + .+...|.+++|+|++.+|++++ ++.|+|||+.+  +..+..+..+                   ...
T Consensus       596 ~~~-------~-~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (694)
T 3dm0_A          596 LYS-------L-EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES--KSIVEDLKVDLKAEAEKADNSGPAATKRKVIY  664 (694)
T ss_dssp             EEC-------C-BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT--TEEEEEECCCCC----------------CCCC
T ss_pred             EEE-------e-cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC--CCChhhhccccccccccccccccccCCceeEE
Confidence            332       1 2345799999999999888876 55699999997  4544443321                   123


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          514 VFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       514 i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +++++|+|+|++|++|+.||+|+||++
T Consensus       665 ~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          665 CTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             eeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence            789999999999999999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-38  Score=311.00  Aligned_cols=288  Identities=14%  Similarity=0.103  Sum_probs=246.5

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +.+|.+.|++++|+|+ +.+|++|+.||.|++||+.+++....+        .+|...|.+++|+|++++|+++    +.
T Consensus        28 l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~s~----~~   94 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTL--------DGHTGTIWSIDVDCFTKYCVTG----SA   94 (369)
T ss_dssp             EECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEE--------CCCSSCEEEEEECTTSSEEEEE----ET
T ss_pred             EEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhh--------hhcCCcEEEEEEcCCCCEEEEE----eC
Confidence            4799999999999996 999999999999999999988776666        5899999999999999999999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----CcEEEEecCCCCCccccce------
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-----HAVVLWSERDAEDSWKPKA------  367 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~------  367 (540)
                      |+.|++||+.++   ..+..+.    +...|.+++|+| ++.+|++++.+     +.|++||+...........      
T Consensus        95 dg~i~iwd~~~~---~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~  166 (369)
T 3zwl_B           95 DYSIKLWDVSNG---QCVATWK----SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI  166 (369)
T ss_dssp             TTEEEEEETTTC---CEEEEEE----CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred             CCeEEEEECCCC---cEEEEee----cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence            999999999986   3444444    356799999999 99999999998     9999999987654221111      


Q ss_pred             eecccCCc--ceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203          368 LHRNLHSS--AVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLR  443 (540)
Q Consensus       368 ~~~~~~~~--~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  443 (540)
                      .....|..  .+.+++|+|++++|++++.||.|++||+++ +..+.... ....+.++.|+|++   .+|++++.|+.|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~  243 (369)
T 3zwl_B          167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL---TYFITSSRDTNSF  243 (369)
T ss_dssp             EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS---SEEEEEETTSEEE
T ss_pred             eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC---CEEEEecCCceEE
Confidence            11123444  899999999999999999999999999998 55554443 56788999999987   6899999999999


Q ss_pred             EEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC--------------cEEEEeccCCCCcccccccc
Q 009203          444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP--------------VIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg--------------~i~iwd~~~~~~~~~~~~~~  509 (540)
                      +||+.++......        .+...+.+++|+|++.++++++.++              .+++||+.+  ++.+..+.+
T Consensus       244 v~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~~~~  313 (369)
T 3zwl_B          244 LVDVSTLQVLKKY--------ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF--EEEIGRVQG  313 (369)
T ss_dssp             EEETTTCCEEEEE--------ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT--CCEEEEEEC
T ss_pred             EEECCCCceeeee--------cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC--Ccchhheec
Confidence            9999987754332        1567899999999999999999988              899999998  788889999


Q ss_pred             cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          510 HQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       510 h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |...|++++|+|++++|++++.||.|+||++
T Consensus       314 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          314 HFGPLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            9999999999999999999999999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.3e-40  Score=319.74  Aligned_cols=300  Identities=15%  Similarity=0.158  Sum_probs=242.1

Q ss_pred             hcccccCceEEEEEecC---CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC----CCeEE
Q 009203          218 VSSLHKRKLRSLSLNPV---NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ----GNSLF  290 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd---~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~  290 (540)
                      +..+|.+.|++++|+|+   +..++++++.++.|++||+.+++....+.....   ..|...|.+++|+|+    +.+|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~l~   89 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD---ADADENFYTCAWTYDSNTSHPLLA   89 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC---SCTTCCEEEEEEEECTTTCCEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc---cCCCCcEEEEEeccCCCCCCCEEE
Confidence            34699999999999983   355666666677999999998776655543322   357889999999999    66899


Q ss_pred             EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee-
Q 009203          291 SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH-  369 (540)
Q Consensus       291 s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-  369 (540)
                      ++    +.||.|++||+.++   ..+..+..   |...|.+++|+|.++.+|++|+.||.|++||+++++..   ..+. 
T Consensus        90 ~~----~~dg~i~v~d~~~~---~~~~~~~~---~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~  156 (366)
T 3k26_A           90 VA----GSRGIIRIINPITM---QCIKHYVG---HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV---AIFGG  156 (366)
T ss_dssp             EE----ETTCEEEEECTTTC---CEEEEEES---CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE---EEECS
T ss_pred             Ee----cCCCEEEEEEchhc---eEeeeecC---CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE---EEecc
Confidence            99    99999999999976   44555654   67889999999977899999999999999999987642   2221 


Q ss_pred             cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-----------------------------cCccEEE
Q 009203          370 RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-----------------------------IESKCMS  420 (540)
Q Consensus       370 ~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------------------------~~~~~~~  420 (540)
                      ...|...|.+++|+|++.+|++++.||.|++||+++++......                             +...+.+
T Consensus       157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  236 (366)
T 3k26_A          157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC  236 (366)
T ss_dssp             TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred             cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence            14699999999999999999999999999999999876533221                             4566778


Q ss_pred             EeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee-------ccccccCccccCeEEEEEcCC--CCEEEEEeCCCcE
Q 009203          421 VLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF-------GWKQESSESQSALINQSWSPD--GLYITSGSADPVI  491 (540)
Q Consensus       421 ~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~sp~--g~~l~sg~~dg~i  491 (540)
                      +.|++     .++++++.|+.|++||+.+........       .....+..|...|++++|+|+  +++|++|+.||.|
T Consensus       237 ~~~~~-----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i  311 (366)
T 3k26_A          237 VRWLG-----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL  311 (366)
T ss_dssp             EEEET-----TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred             EEEcC-----CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence            88872     489999999999999998765421111       012245678889999999999  9999999999999


Q ss_pred             EEEeccCCCCccc----cccccc--ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          492 HLFDIRYSANKPS----QSIRAH--QKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       492 ~iwd~~~~~~~~~----~~~~~h--~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++||+..  +.+.    ..+.+|  ...|++++|+|++++|++++.||.|+|||+
T Consensus       312 ~vwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          312 YVWDLEV--EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             EEEECCS--SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEEECCC--CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            9999997  4433    366677  789999999999999999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-38  Score=307.75  Aligned_cols=298  Identities=15%  Similarity=0.221  Sum_probs=233.3

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----------
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----------  216 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----------  216 (540)
                      ...+.+|...|.++.+.+...                         ....-..+++++.|++|++|+..           
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~-------------------------~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~   68 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQK-------------------------ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP   68 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSS-------------------------TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEE
T ss_pred             eeeeccchhhhhheeeEEEee-------------------------cCCCCCEEEEEcCCCEEEEEECCcCCcccccccc
Confidence            345678999999998833210                         00011257889999999999753           


Q ss_pred             -hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          217 -HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       217 -~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                       ..+.+|...|++++|+|+ +.+|++|+.|++|+|||+.+++....+        .+|...|.+++|+|++++|+++   
T Consensus        69 ~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~~~~~~~~--------~~h~~~v~~v~~sp~~~~l~s~---  136 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRTGTTYKRF--------VGHQSEVYSVAFSPDNRQILSA---  136 (343)
T ss_dssp             EEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEETTSSCEEEEE--------ECCCSCEEEEEECSSTTEEEEE---
T ss_pred             cchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEEE--------cCCCCcEEEEEECCCCCEEEEE---
Confidence             347899999999999995 899999999999999999988766655        5899999999999999999999   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC----------CEEEEEecCCcEEEEecCCCCCcccc
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN----------PCFATGGSDHAVVLWSERDAEDSWKP  365 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~  365 (540)
                       +.|+.|++||+...    ..........|...|.+++|+| ++          .+|++++.|+.|++||... .     
T Consensus       137 -~~d~~i~~wd~~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~-----  204 (343)
T 2xzm_R          137 -GAEREIKLWNILGE----CKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q-----  204 (343)
T ss_dssp             -ETTSCEEEEESSSC----EEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E-----
T ss_pred             -cCCCEEEEEeccCC----ceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCC-c-----
Confidence             99999999999732    2333333334678899999999 65          7899999999999999543 2     


Q ss_pred             ceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEE
Q 009203          366 KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRL  444 (540)
Q Consensus       366 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i  444 (540)
                      ......+|...|.+++|+|+|++|++|+.||.|++||+.. ............+.+++|+|++   .++++ +.|+.|++
T Consensus       205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~---~~la~-~~d~~v~i  280 (343)
T 2xzm_R          205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKL---QWVAV-GTDQGVKI  280 (343)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSS---CEEEE-EESSCEEE
T ss_pred             eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCC---CEEEE-ECCCCEEE
Confidence            1223356999999999999999999999999999999954 4444444456678999999987   45554 46888999


Q ss_pred             EECCCCcceee-eecc-----ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          445 YDIRLRQTEIH-AFGW-----KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       445 ~d~~~~~~~~~-~~~~-----~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ||+.+...... .+..     .....+|...|++++|+|+|++|++|+.||.|++|++.+
T Consensus       281 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          281 FNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             EESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             EEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            99987653221 1110     011236888999999999999999999999999999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-39  Score=308.66  Aligned_cols=294  Identities=14%  Similarity=0.223  Sum_probs=221.6

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhc-
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVS-  219 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~-  219 (540)
                      ...+.+|...|.++.+.|.                                 .+++++.|++|++|+..       .++ 
T Consensus         7 ~~~~~~h~~~v~~~~~s~~---------------------------------~las~~~D~~i~lw~~~~~~~~~~~~~~   53 (330)
T 2hes_X            7 IKSLKLYKEKIWSFDFSQG---------------------------------ILATGSTDRKIKLVSVKYDDFTLIDVLD   53 (330)
T ss_dssp             EEEEECCSSCEEEEEEETT---------------------------------EEEEEESSSCEEEEECSSSCCEEEEEEC
T ss_pred             ceeeccCCCceeeeccCCC---------------------------------EEEEEcCCCEEEEEEecCCCeEEEEEEe
Confidence            4566788888888888765                                 47888999999999754       123 


Q ss_pred             cc-ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC---cceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          220 SL-HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS---GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       220 ~~-h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~---~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      .+ |.+.|++|+|+|+ +.+|++|+.|++|+|||+.....   .......    ..+|...|.+++|+|+|++|+++   
T Consensus        54 ~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~----~~~h~~~V~~v~~sp~g~~las~---  125 (330)
T 2hes_X           54 ETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI----IEGHENEVKGVAWSNDGYYLATC---  125 (330)
T ss_dssp             TTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEE----EC----CEEEEEECTTSCEEEEE---
T ss_pred             cCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEE----EcCCCCcEEEEEECCCCCEEEEE---
Confidence            44 9999999999996 89999999999999999864321   0111111    15899999999999999999999   


Q ss_pred             CCCCCeEEEEecCCC-CCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203          296 DSGDSQISVLNLNKT-KGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                       +.|++|++||+... ....++..+.+   |...|.+++|+| ++.+|++|+.|++|++||..++..   .......+|.
T Consensus       126 -s~D~~v~iwd~~~~~~~~~~~~~~~~---h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~---~~~~~~~~h~  197 (330)
T 2hes_X          126 -SRDKSVWIWETDESGEEYECISVLQE---HSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW---ECVAVLNGHE  197 (330)
T ss_dssp             -ETTSCEEEEECCTTCCCCEEEEEECC---CSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEE---EEEEEECCCS
T ss_pred             -eCCCEEEEEeccCCCCCeEEEEEecc---CCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCe---eEEEEccCCC
Confidence             99999999999533 23355666665   678899999999 999999999999999999876531   1122335799


Q ss_pred             cceeEEEeccC--CCEEEEEeCCCeEEEEECCCCC--------eeeee--ccCccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203          375 SAVMGVAGMQQ--KQIVLSAGADKRIIGFDAGVGR--------ADFKH--QIESKCMSVLPNPCDFNLFMVQTGTPGRQL  442 (540)
Q Consensus       375 ~~v~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v  442 (540)
                      ..|.+++|+|+  +.+|++++.|++|++||++.+.        .....  .+...+.++.|++.+    +|++++.||.|
T Consensus       198 ~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~----~l~s~~~dg~v  273 (330)
T 2hes_X          198 GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG----LIASVGADGVL  273 (330)
T ss_dssp             SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS----CEEEEETTSCE
T ss_pred             CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC----EEEEEeCCCEE
Confidence            99999999998  6789999999999999987542        22222  245678899999654    79999999999


Q ss_pred             EEEECCCCcceeeeeccccccCcccc-CeEEEEEcC--CCCEEEEEeCCCcEEEEeccC
Q 009203          443 RLYDIRLRQTEIHAFGWKQESSESQS-ALINQSWSP--DGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       443 ~i~d~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp--~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ++||..++......    ....+|.. .|.+++|+|  ++++|++|+.||.|+|||+..
T Consensus       274 ~iw~~~~~~~~~~~----~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          274 AVYEEVDGEWKVFA----KRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEETTEEEEEE----EESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEcCCCceEEEe----ccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            99998765321110    12346776 899999999  789999999999999999874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-38  Score=309.50  Aligned_cols=286  Identities=12%  Similarity=0.151  Sum_probs=226.1

Q ss_pred             CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCC------CCeEEEeccc---------h
Q 009203          153 PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSAS------PATIHCHTSN---------H  217 (540)
Q Consensus       153 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------d~~i~~~~~~---------~  217 (540)
                      .|...|+++++.|...                               .+++++.      |+++++|+..         .
T Consensus        40 ~H~~~V~~v~fSpDG~-------------------------------~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~   88 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGA-------------------------------LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT   88 (357)
T ss_dssp             CCCSEEEEEEECSSSC-------------------------------EEEEEECSSSSSCCEEEEEESSCC---CGGGCS
T ss_pred             cccCCEEEEEECCCCC-------------------------------EEEEEcCCCCccccCeEEEEECCCCCcceeEec
Confidence            6889999999999753                               3445554      6678888542         1


Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      ...+|...|++++|+|+ +. +++++.||+|+|||+.+++.........    .+|...|++++|+|++++|+++    +
T Consensus        89 ~~~~~~~~V~~~~~s~d-~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~----~~h~~~V~~v~~spdg~~l~sg----s  158 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSE-KG-ILVASDSGAVELWEILEKESLLVNKFAK----YEHDDIVKTLSVFSDGTQAVSG----G  158 (357)
T ss_dssp             EEEECSSCEEEEEEETT-TE-EEEEETTSCEEEC--------CCCCEEE----CCCSSCEEEEEECSSSSEEEEE----E
T ss_pred             ccCCCCCCEEEEEEcCC-CC-EEEEECCCEEEEeeccccceeEEEeecc----CCCCCCEEEEEECCCCCEEEEE----e
Confidence            24589999999999996 65 5567889999999998876543322111    4899999999999999999999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .|+.|++||+.++   ..+..+..   |...|.+++|+|....++++++.||.|++||+++++.   ...+....+...+
T Consensus       159 ~dg~v~iwd~~~~---~~~~~~~~---h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~---~~~~~~~~~~~~v  229 (357)
T 4g56_B          159 KDFSVKVWDLSQK---AVLKSYNA---HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP---ATRIDFCASDTIP  229 (357)
T ss_dssp             TTSCEEEEETTTT---EEEEEECC---CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC---BCBCCCTTCCSCE
T ss_pred             CCCeEEEEECCCC---cEEEEEcC---CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce---eeeeeeccccccc
Confidence            9999999999986   56666665   6788999999994446899999999999999998875   2333334577889


Q ss_pred             eEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          378 MGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       378 ~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      .+++|+|+ +.+|++|+.|+.|++||+++++.+.... ....+.+++|+|++.  .+|++|+.|++|+|||+++++... 
T Consensus       230 ~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~lasgs~D~~i~iwd~~~~~~~~-  306 (357)
T 4g56_B          230 TSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSS--PFLASISEDCTVAVLDADFSEVFR-  306 (357)
T ss_dssp             EEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSS--CCEEEEETTSCEEEECTTSCEEEE-
T ss_pred             cchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCC--CEEEEEeCCCEEEEEECCCCcEeE-
Confidence            99999997 5688899999999999999988876654 456788999999763  479999999999999999876432 


Q ss_pred             eeccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccC
Q 009203          456 AFGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~  498 (540)
                             ..+|...|++++|+| ++.+|++|+.||.|++|++..
T Consensus       307 -------~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          307 -------DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             -------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             -------ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence                   236899999999998 799999999999999999986

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-39  Score=346.94  Aligned_cols=371  Identities=11%  Similarity=0.087  Sum_probs=256.5

Q ss_pred             cCCcceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccce--------EEecCCCCeEEEeccc-----
Q 009203          152 SPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIPL--------VRTSASPATIHCHTSN-----  216 (540)
Q Consensus       152 ~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~~~~~~d~~i~~~~~~-----  216 (540)
                      .+|...|.++++.|...+.+  +.|..+. +|............|...|..        +++++.|++|++|+..     
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~-lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~   92 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVH-IYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVL   92 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEE-EECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEE-EEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEE
Confidence            37889999999999987766  4555544 333222222222345555544        5556679999999864     


Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecc--cc--cCCCCCCCCceeEEEecC-CCeEEE
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLST--TD--CLSPKHRRWPEDIAWHPQ-GNSLFS  291 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~--~~--~~~~~h~~~V~~~~~~~~-~~~l~s  291 (540)
                      ..+ .|.+.|++++|+|+ +.+|++|+.||+|++||+.++... .+...  ..  ....+|...|.+++|+|+ +..|++
T Consensus        93 ~~~-~~~~~V~~v~~sp~-g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~  169 (902)
T 2oaj_A           93 TTV-FVPGKITSIDTDAS-LDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI  169 (902)
T ss_dssp             EEE-ECSSCEEEEECCTT-CSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred             EEE-cCCCCEEEEEECCC-CCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence            223 37789999999996 999999999999999999877542 11100  00  112589999999999996 468888


Q ss_pred             EeecCCCCCeEEEEecCCCCCceeEEeecCC---------------CCcccceeEEEEeCCCCCEEEEEecCCcEEEEec
Q 009203          292 AHTADSGDSQISVLNLNKTKGRACVTFLDDK---------------PHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE  356 (540)
Q Consensus       292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  356 (540)
                      +    +.|+.| +||+.++   ..+..+..+               .+|...|.+++|+| ++.+|++|+.||.|++||+
T Consensus       170 g----~~dg~v-lWd~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          170 S----YEYVTL-TYSLVEN---EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             E----CSSCEE-EEETTTT---EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEET
T ss_pred             E----eCCCcE-EEECCCC---ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEEC
Confidence            8    999999 9999976   455555543               23457799999999 9999999999999999999


Q ss_pred             CCCCCccccceee-cc-------------cCCcceeEEEec----cCC-CEEEEEeCC----------------------
Q 009203          357 RDAEDSWKPKALH-RN-------------LHSSAVMGVAGM----QQK-QIVLSAGAD----------------------  395 (540)
Q Consensus       357 ~~~~~~~~~~~~~-~~-------------~~~~~v~~l~~s----~~~-~~l~~~~~d----------------------  395 (540)
                      ++++++.. ..+. ..             .|...|++++|+    |++ .+|++|+.|                      
T Consensus       241 ~~g~~~~~-r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~  319 (902)
T 2oaj_A          241 NSGHMIMA-RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT  319 (902)
T ss_dssp             TTCCEEEE-ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred             CCCcEEEE-EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence            98764211 0010 00             134568888884    332 345555433                      


Q ss_pred             ------------------------------------------------------CeEEEEECCCCCeeee--------ec
Q 009203          396 ------------------------------------------------------KRIIGFDAGVGRADFK--------HQ  413 (540)
Q Consensus       396 ------------------------------------------------------g~i~iwd~~~~~~~~~--------~~  413 (540)
                                                                            |.|++||+.++.....        ..
T Consensus       320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~  399 (902)
T 2oaj_A          320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSW  399 (902)
T ss_dssp             CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTT
T ss_pred             chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccc
Confidence                                                                  3344444433321110        00


Q ss_pred             cCccEEEE----------------------------------eecCCCCCceEEEEEcCCCeEEEEECCCCccee-eeec
Q 009203          414 IESKCMSV----------------------------------LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI-HAFG  458 (540)
Q Consensus       414 ~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~  458 (540)
                      ....+.++                                  +|+|+   +.+|++|+.|++|++||+.++.... ..+.
T Consensus       400 ~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd---g~~laSgs~DgtVrlWd~~~g~~~~~~~~~  476 (902)
T 2oaj_A          400 LRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY---GTAFITGHSNGSVRIYDASHGDIQDNASFE  476 (902)
T ss_dssp             BTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE---EEEEEEEETTSEEEEEESSCCTTTTTBCEE
T ss_pred             cCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc---CcEEEEecCCCcEEEEECCCccccCCceEE
Confidence            01122222                                  23343   3799999999999999998774211 0010


Q ss_pred             cc---cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC----------------------------------
Q 009203          459 WK---QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN----------------------------------  501 (540)
Q Consensus       459 ~~---~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~----------------------------------  501 (540)
                      ..   ....+|...|++++|+|||++||+|+.||+|+|||+.+...                                  
T Consensus       477 ~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (902)
T 2oaj_A          477 VNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDR  556 (902)
T ss_dssp             EEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGG
T ss_pred             eechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccccc
Confidence            00   00127889999999999999999999999999999986310                                  


Q ss_pred             ---------cccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          502 ---------KPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       502 ---------~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                               .++..+.+|.+.|++|+|+||| +||+|+.|++|+|||+
T Consensus       557 ~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~  603 (902)
T 2oaj_A          557 APTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR  603 (902)
T ss_dssp             CCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred             CCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence                     2356677899999999999999 9999999999999995

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.8e-39  Score=321.89  Aligned_cols=294  Identities=14%  Similarity=0.145  Sum_probs=229.2

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTADS  297 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~  297 (540)
                      ..+|...|+||+|+|.++.+||+|+.||+|+|||+.+++....+..      .+|.+.|++++|+| ++.+|+++    +
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~------~gH~~~V~~l~f~p~~~~~l~s~----s  184 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG------IGAGGSITGLKFNPLNTNQFYAS----S  184 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC------CSSSCCCCEEEECSSCTTEEEEE----C
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc------cCCCCCEEEEEEeCCCCCEEEEE----e
Confidence            4688999999999997688999999999999999987764333311      48999999999998 68899999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .|++|++||+.++    ....+.....+...+.+++|+| ++.+|++|+.||.|++||++...    ...  ..+|...|
T Consensus       185 ~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~----~~~--~~~h~~~v  253 (435)
T 4e54_B          185 MEGTTRLQDFKGN----ILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE----LWN--LRMHKKKV  253 (435)
T ss_dssp             SSSCEEEEETTSC----EEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB----CCC--SBCCSSCE
T ss_pred             CCCEEEEeeccCC----ceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce----eEE--EecccceE
Confidence            9999999999864    2333333223455688999999 99999999999999999997643    222  25699999


Q ss_pred             eEEEeccCCC-EEEEEeCCCeEEEEECCCCCeee----eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          378 MGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADF----KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       378 ~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      ++++|+|++. +|++++.|+.|++||+++++...    ...+...+.+++|+|++   .+|++++.||.|++||+.++..
T Consensus       254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg---~~l~s~~~D~~i~iwd~~~~~~  330 (435)
T 4e54_B          254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG---ARLLTTDQKSEIRVYSASQWDC  330 (435)
T ss_dssp             EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS---SEEEEEESSSCEEEEESSSSSS
T ss_pred             EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC---CeeEEEcCCCEEEEEECCCCcc
Confidence            9999999876 78899999999999998865432    23456788999999987   7999999999999999998876


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEEEEe------------CCCcEEEEeccCCCCcccccc-cccccceeEE-E
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGS------------ADPVIHLFDIRYSANKPSQSI-RAHQKRVFKA-V  518 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~------------~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l-~  518 (540)
                      ......+......+ ..+..+.|+|++.++++++            .++.|++||..+  +..+..+ .+|...|.++ +
T Consensus       331 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~--g~~~~~l~~~~~~~v~s~~~  407 (435)
T 4e54_B          331 PLGLIPHPHRHFQH-LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS--GKMMCQLYDPESSGISSLNE  407 (435)
T ss_dssp             EEEECCCCCCCCSS-SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS--CCEEEEECCSSCCCCCCEEE
T ss_pred             ceEEeccccccccc-ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC--CcEEEEEeCCCCCcEEEEEE
Confidence            55443322111111 1233456777766666553            345799999998  6666665 4688889887 6


Q ss_pred             EcCCCCEEEEEEcCCcEEEEeC
Q 009203          519 WHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       519 ~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |+|+|.+|++|+ |++|+||++
T Consensus       408 fspdg~~lasg~-d~~i~iW~~  428 (435)
T 4e54_B          408 FNPMGDTLASAM-GYHILIWSQ  428 (435)
T ss_dssp             ECTTSSCEEEEC-SSEEEECCC
T ss_pred             ECCCCCEEEEEc-CCcEEEEEC
Confidence            999999999876 889999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-38  Score=358.76  Aligned_cols=371  Identities=14%  Similarity=0.182  Sum_probs=299.2

Q ss_pred             CCCCeeeecCCcceeeEEEEcccccccC--CCCccEEEEeec-CCCceEEecccccccceEE-----------ecCCCCe
Q 009203          144 PSGSSTQASPAAHSIGIVKVKGEKSHRN--SSDSEIVEVRDR-GTKRKFEQKEHRELIPLVR-----------TSASPAT  209 (540)
Q Consensus       144 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~-----------~~~~d~~  209 (540)
                      .......+.+|...|.++++.|...+.+  +.+..+. +|.. .........+|...|.+++           +++.|++
T Consensus       646 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~-vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~  724 (1249)
T 3sfz_A          646 TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK-IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF  724 (1249)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE-EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred             CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEE-EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence            3445667789999999999999987666  4555544 3433 2333344567777776554           4556899


Q ss_pred             EEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeeccc------------------
Q 009203          210 IHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTT------------------  266 (540)
Q Consensus       210 i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~------------------  266 (540)
                      |++|+..     ..+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.++.....+....                  
T Consensus       725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  803 (1249)
T 3sfz_A          725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPD-DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC  803 (1249)
T ss_dssp             EEEEETTSSSEEEEECCCSSCEEEEEECSS-TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred             EEEEECCCcchhheecCCCCCEEEEEEecC-CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence            9999765     457899999999999995 8999999999999999998765433221100                  


Q ss_pred             -----------------------------ccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203          267 -----------------------------DCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT  317 (540)
Q Consensus       267 -----------------------------~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~  317 (540)
                                                   .....+|...|.+++|+|++.+++++    +.++.|++||+.++   ..+.
T Consensus       804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~~dg~v~vwd~~~~---~~~~  876 (1249)
T 3sfz_A          804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA----LSQYCVELWNIDSR---LKVA  876 (1249)
T ss_dssp             CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEE----CSSSCEEEEETTTT---EEEE
T ss_pred             EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEE----eCCCeEEEEEcCCC---ceee
Confidence                                         00012788999999999999999999    99999999999976   5566


Q ss_pred             eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC------------------------------------
Q 009203          318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED------------------------------------  361 (540)
Q Consensus       318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~------------------------------------  361 (540)
                      .+.+   |.+.|.+++|+| ++.+|++++.||.|++||+.+...                                    
T Consensus       877 ~~~~---h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  952 (1249)
T 3sfz_A          877 DCRG---HLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK  952 (1249)
T ss_dssp             EECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEES
T ss_pred             ecCC---CccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecC
Confidence            6654   677899999999 999999999999999998642100                                    


Q ss_pred             ----------------------------------cc----ccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEEC
Q 009203          362 ----------------------------------SW----KPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDA  403 (540)
Q Consensus       362 ----------------------------------~~----~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~  403 (540)
                                                        ++    ........+|...|.+++|+|+|++|++++.||.|++||+
T Consensus       953 ~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A          953 TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp             SCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred             cceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence                                              00    0001112458899999999999999999999999999999


Q ss_pred             CCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEE
Q 009203          404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT  483 (540)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  483 (540)
                      .++...........+.++.++|++    .+++++.||.|++||+.++....       .+.+|...|++++|+|+|++|+
T Consensus      1033 ~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~dg~v~vwd~~~~~~~~-------~~~~~~~~v~~~~~s~d~~~l~ 1101 (1249)
T 3sfz_A         1033 QTGDYVFLQAHQETVKDFRLLQDS----RLLSWSFDGTVKVWNVITGRIER-------DFTCHQGTVLSCAISSDATKFS 1101 (1249)
T ss_dssp             TTTEEECCBCCSSCEEEEEECSSS----EEEEEESSSEEEEEETTTTCCCE-------EEECCSSCCCCEEECSSSSSCE
T ss_pred             CCCceEEEecCCCcEEEEEEcCCC----cEEEEECCCcEEEEECCCCceeE-------EEcccCCcEEEEEECCCCCEEE
Confidence            999888777778889999999975    78899999999999999887543       3457889999999999999999


Q ss_pred             EEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          484 SGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       484 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +++.||.|++||+.+  +.++..+.+|.+.|++++|+|+|++|++++.||.|++||+
T Consensus      1102 s~s~d~~v~iwd~~~--~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A         1102 STSADKTAKIWSFDL--LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp             EECCSSCCCEECSSS--SSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEES
T ss_pred             EEcCCCcEEEEECCC--cceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            999999999999998  6788899999999999999999999999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.5e-39  Score=313.01  Aligned_cols=292  Identities=13%  Similarity=0.142  Sum_probs=238.1

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +..|.++|++++|+|+ +.+|++|+.|+.|++||+.+++  ....+        .+|...|.+++|+|++++|+++    
T Consensus         4 ~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~~~----   70 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHEL--------KEHNGQVTGVDWAPDSNRIVTC----   70 (372)
T ss_dssp             EESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEE--------ECCSSCEEEEEEETTTTEEEEE----
T ss_pred             ecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeee--------cCCCCcccEEEEeCCCCEEEEE----
Confidence            4579999999999996 9999999999999999998875  44444        4788999999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|+.|++||+.++   .....+... .|...|.+++|+| ++.+|++++.|+.|++||++.+...... ......|...
T Consensus        71 ~~dg~i~vwd~~~~---~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~~~~~  144 (372)
T 1k8k_C           71 GTDRNAYVWTLKGR---TWKPTLVIL-RINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVC-KHIKKPIRST  144 (372)
T ss_dssp             ETTSCEEEEEEETT---EEEEEEECC-CCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEE-EEECTTCCSC
T ss_pred             cCCCeEEEEECCCC---eeeeeEEee-cCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceee-eeeecccCCC
Confidence            99999999999875   222222211 2567899999999 9999999999999999999987631111 1222458899


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECC------------------CCCeeeee-ccCccEEEEeecCCCCCceEEEEEc
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAG------------------VGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      |.+++|+|++++|++++.||.|++||++                  .++.+... .+...+.++.|+|++   .+|++++
T Consensus       145 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~  221 (372)
T 1k8k_C          145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG---SRVAWVS  221 (372)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS---SEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC---CEEEEEe
Confidence            9999999999999999999999999964                  45555544 445678999999987   6999999


Q ss_pred             CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC----------------
Q 009203          438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN----------------  501 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~----------------  501 (540)
                      .|+.|++||+++++...       .+..|...|.+++|+|++.+|++| .|+.|++|++....+                
T Consensus       222 ~d~~i~i~d~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~  293 (372)
T 1k8k_C          222 HDSTVCLADADKKMAVA-------TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ  293 (372)
T ss_dssp             TTTEEEEEEGGGTTEEE-------EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred             CCCEEEEEECCCCceeE-------EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchh
Confidence            99999999999877543       335678899999999999998888 899999999986111                


Q ss_pred             ----------------ccc------ccc-cccccceeEEEEc-CCC---CEEEEEEcCCcEEEEeC
Q 009203          502 ----------------KPS------QSI-RAHQKRVFKAVWH-YSH---PLLISISSDLNIGLHKI  540 (540)
Q Consensus       502 ----------------~~~------~~~-~~h~~~i~~l~~s-~~~---~~l~s~~~dg~v~iw~l  540 (540)
                                      ...      ..+ .+|.+.|++++|+ ++|   .+|++|+.||.|++|++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          294 RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             ---CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             hhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                            010      223 4899999999976 666   89999999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.3e-38  Score=326.38  Aligned_cols=364  Identities=19%  Similarity=0.251  Sum_probs=272.7

Q ss_pred             CCeeeecCCcce-eeEEEEcc--cccccC--CCCccEEEEeec---------CCCceEEecccccccceEEecCC-----
Q 009203          146 GSSTQASPAAHS-IGIVKVKG--EKSHRN--SSDSEIVEVRDR---------GTKRKFEQKEHRELIPLVRTSAS-----  206 (540)
Q Consensus       146 ~~~~~~~~h~~~-v~~~~~~~--~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~-----  206 (540)
                      .....+.+|... |.++++.|  ...+.+  +.+..+. +|..         ..........|...|..+++.++     
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~-vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  132 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI-VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  132 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE-EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE-EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence            456677899999 99999999  766555  4455444 2222         12333445667888877776654     


Q ss_pred             ----C----CeEEEeccc---hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203          207 ----P----ATIHCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR  275 (540)
Q Consensus       207 ----d----~~i~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~  275 (540)
                          +    +.|.+|+..   ..+.+|.+.|++++|+|++..+|++|+.|+.|++||+.+++....+        .+|..
T Consensus       133 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~--------~~~~~  204 (615)
T 1pgu_A          133 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD--------RTHHK  204 (615)
T ss_dssp             EEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE--------CSSSC
T ss_pred             EeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee--------cccCC
Confidence                2    578888744   4578999999999999973348999999999999999887765555        46778


Q ss_pred             ---CceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCCCCceeEEee-cCCCCcccceeEEEEeCCCCCEEEEEecCCc
Q 009203          276 ---WPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFL-DDKPHVKGIINSIIFLPWENPCFATGGSDHA  350 (540)
Q Consensus       276 ---~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  350 (540)
                         .|.+++|+|+ +++|+++    +.|+.|++||+.++   ..+..+ .....|...|.+++|+  ++.+|++++.|+.
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~----~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~  275 (615)
T 1pgu_A          205 QGSFVRDVEFSPDSGEFVITV----GSDRKISCFDGKSG---EFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADAT  275 (615)
T ss_dssp             TTCCEEEEEECSTTCCEEEEE----ETTCCEEEEETTTC---CEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSE
T ss_pred             CCceEEEEEECCCCCCEEEEE----eCCCeEEEEECCCC---CEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCc
Confidence               8999999999 9999999    99999999999876   445555 3111367889999999  8889999999999


Q ss_pred             EEEEecCCCCCccccce----------------------------------------eecccCC----------------
Q 009203          351 VVLWSERDAEDSWKPKA----------------------------------------LHRNLHS----------------  374 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~----------------------------------------~~~~~~~----------------  374 (540)
                      |++||+.+++.......                                        ....+|.                
T Consensus       276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~  355 (615)
T 1pgu_A          276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSY  355 (615)
T ss_dssp             EEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEET
T ss_pred             EEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECC
Confidence            99999987653211100                                        0011233                


Q ss_pred             -----------------cceeEEEeccCCCEEEEEeCC------------------------------------------
Q 009203          375 -----------------SAVMGVAGMQQKQIVLSAGAD------------------------------------------  395 (540)
Q Consensus       375 -----------------~~v~~l~~s~~~~~l~~~~~d------------------------------------------  395 (540)
                                       ..|.+++| +++..|++++.|                                          
T Consensus       356 dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  434 (615)
T 1pgu_A          356 DGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS  434 (615)
T ss_dssp             TSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred             CCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEec
Confidence                             33444444 224444444444                                          


Q ss_pred             --------------------------------CeEEEEECCCCCee--eeeccCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203          396 --------------------------------KRIIGFDAGVGRAD--FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ  441 (540)
Q Consensus       396 --------------------------------g~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  441 (540)
                                                      +.|++||+.++...  ....+...+.++.|+|++   .+|++++.||.
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~dg~  511 (615)
T 1pgu_A          435 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE---TYIAAGDVMGK  511 (615)
T ss_dssp             TTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS---SEEEEEETTSC
T ss_pred             cCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC---CEEEEcCCCCe
Confidence                                            44444444433321  112345678899999987   79999999999


Q ss_pred             EEEEECCCCcceeeeeccccccCc-cccCeEEEEEcC----------CCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          442 LRLYDIRLRQTEIHAFGWKQESSE-SQSALINQSWSP----------DGLYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       442 v~i~d~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp----------~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      |++||+.+++...       .+.+ |...|++++|+|          ++++|++|+.||.|++||+.+. ..++..+.+|
T Consensus       512 i~iw~~~~~~~~~-------~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h  583 (615)
T 1pgu_A          512 ILLYDLQSREVKT-------SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-MKIIKALNAH  583 (615)
T ss_dssp             EEEEETTTTEEEE-------CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-TCCEEETTSS
T ss_pred             EEEeeCCCCccee-------EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC-ceechhhhcC
Confidence            9999999877543       3345 889999999999          9999999999999999999973 3778889999


Q ss_pred             ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          511 QKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       511 ~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ...|++++|+|+++ |++++.||.|++|++
T Consensus       584 ~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          584 KDGVNNLLWETPST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             TTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             ccceEEEEEcCCCC-eEEecCCceEEEEee
Confidence            99999999999999 999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-39  Score=321.08  Aligned_cols=294  Identities=16%  Similarity=0.249  Sum_probs=244.6

Q ss_pred             ccCceEEEEEecCCCcEEEEE----------eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEE
Q 009203          222 HKRKLRSLSLNPVNEQLFVTS----------ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFS  291 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg----------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s  291 (540)
                      +...|.+++|+|++..+|++|          +.|+.|+|||+.++.....+..      ..|...|.+++|+|++.+|++
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~   84 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS------LQVDSKFNDLDWSHNNKIIAG   84 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC------CCCSSCEEEEEECSSSSCEEE
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE------EecCCceEEEEECCCCCeEEE
Confidence            335789999999744499999          8999999999987653211110      367889999999999999999


Q ss_pred             EeecCCCCCeEEEEecCCCCC-ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC------Cccc
Q 009203          292 AHTADSGDSQISVLNLNKTKG-RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE------DSWK  364 (540)
Q Consensus       292 ~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~------~~~~  364 (540)
                      +    +.|+.|++||+.+... ...+..+..   |...|.+++|+|.++.+|++++.|+.|++||+.++.      ....
T Consensus        85 ~----~~dg~v~vw~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  157 (416)
T 2pm9_A           85 A----LDNGSLELYSTNEANNAINSMARFSN---HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT  157 (416)
T ss_dssp             E----ESSSCEEEECCSSTTSCCCEEEECCC---SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred             E----ccCCeEEEeecccccccccchhhccC---CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence            9    8999999999987321 234555554   678899999999338999999999999999999876      2111


Q ss_pred             cceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeecc-------CccEEEEeecCCCCCceEEEEE
Q 009203          365 PKALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQI-------ESKCMSVLPNPCDFNLFMVQTG  436 (540)
Q Consensus       365 ~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~  436 (540)
                      .  .....|...|.+++|+|+ +.+|++++.||.|++||+++++.+.....       ...+.++.|+|++.  .+++++
T Consensus       158 ~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~  233 (416)
T 2pm9_A          158 P--GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS--TRVATA  233 (416)
T ss_dssp             C--CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--TEEEEE
T ss_pred             c--ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--CEEEEE
Confidence            1  112458899999999998 78999999999999999999888766544       57789999999863  389999


Q ss_pred             cCCC---eEEEEECCCCcceeeeeccccccC-ccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccCCCCcccccccccc
Q 009203          437 TPGR---QLRLYDIRLRQTEIHAFGWKQESS-ESQSALINQSWSP-DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ  511 (540)
Q Consensus       437 ~~dg---~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~  511 (540)
                      +.|+   .|++||+++......      .+. +|...|++++|+| ++.+|++++.||.|++||+.+  ++++..+.+|.
T Consensus       234 ~~d~~~~~i~~~d~~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~--~~~~~~~~~~~  305 (416)
T 2pm9_A          234 TGSDNDPSILIWDLRNANTPLQ------TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES--AEQLSQFPARG  305 (416)
T ss_dssp             ECCSSSCCCCEEETTSTTSCSB------CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS--CCEEEEEECSS
T ss_pred             ECCCCCceEEEEeCCCCCCCcE------EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC--CccceeecCCC
Confidence            9998   999999998653332      345 7889999999999 999999999999999999998  78888999999


Q ss_pred             cceeEEEEcCCC-CEEEEEEcCCcEEEEeC
Q 009203          512 KRVFKAVWHYSH-PLLISISSDLNIGLHKI  540 (540)
Q Consensus       512 ~~i~~l~~s~~~-~~l~s~~~dg~v~iw~l  540 (540)
                      ..|++++|+|++ .+|++++.||.|+||++
T Consensus       306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~  335 (416)
T 2pm9_A          306 NWCFKTKFAPEAPDLFACASFDNKIEVQTL  335 (416)
T ss_dssp             SCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred             CceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence            999999999999 89999999999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.5e-37  Score=296.22  Aligned_cols=286  Identities=15%  Similarity=0.203  Sum_probs=238.0

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccc
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLH  222 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h  222 (540)
                      ...+.+|...|.++.+.|...                               .+++++.|+.+++|+..     ..+.+|
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~-------------------------------~l~s~~~dg~i~iw~~~~~~~~~~~~~h   64 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGE-------------------------------WLASSSADKLIKIWGAYDGKFEKTISGH   64 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-------------------------------EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEEcccCCcEEEEEECCCCC-------------------------------EEEEeeCCCeEEEEeCCCcccchhhccC
Confidence            446679999999999998743                               57788899999999764     457899


Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ...|.+++|+|+ +++|++|+.||.|++||+.+++....+        .+|...|.+++|+|++++|+++    +.|+.|
T Consensus        65 ~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~----~~d~~i  131 (312)
T 4ery_A           65 KLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTL--------KGHSNYVFCCNFNPQSNLIVSG----SFDESV  131 (312)
T ss_dssp             SSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECSSSSEEEEE----ETTSCE
T ss_pred             CCceEEEEEcCC-CCEEEEECCCCEEEEEECCCCcEEEEE--------cCCCCCEEEEEEcCCCCEEEEE----eCCCcE
Confidence            999999999996 899999999999999999988766655        4788999999999999999999    999999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      ++||+.++   ..+..+..   |...|.+++|+| ++.+|++|+.||.|++||+++++..   . .....+...+..++|
T Consensus       132 ~iwd~~~~---~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~---~-~~~~~~~~~~~~~~~  200 (312)
T 4ery_A          132 RIWDVKTG---KCLKTLPA---HSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCL---K-TLIDDDNPPVSFVKF  200 (312)
T ss_dssp             EEEETTTC---CEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE---E-EECCSSCCCEEEEEE
T ss_pred             EEEECCCC---EEEEEecC---CCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcee---e-EEeccCCCceEEEEE
Confidence            99999976   44556654   567899999999 9999999999999999999987641   2 222346778999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      +|++++|++++.||.|++||+++++.+......   ..+....+.+.+  +.++++|+.||.|++||+.+++...     
T Consensus       201 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~-----  273 (312)
T 4ery_A          201 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG--GKWIVSGSEDNLVYIWNLQTKEIVQ-----  273 (312)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS--SCEEEECCTTSCEEEEETTTCCEEE-----
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC--CcEEEEECCCCEEEEEECCCchhhh-----
Confidence            999999999999999999999998876654322   222333333322  1589999999999999999876433     


Q ss_pred             ccccCccccCeEEEEEcCCCCEEEEEe--CCCcEEEEecc
Q 009203          460 KQESSESQSALINQSWSPDGLYITSGS--ADPVIHLFDIR  497 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~--~dg~i~iwd~~  497 (540)
                        .+.+|...|.+++|+|++.+|++++  .|+.|++|+.+
T Consensus       274 --~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          274 --KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             --EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             --hhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence              4568999999999999999999987  69999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.4e-38  Score=310.41  Aligned_cols=279  Identities=16%  Similarity=0.237  Sum_probs=234.6

Q ss_pred             eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203          226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL  305 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw  305 (540)
                      ++.|+|++  +++||+|. |++|+|||+.+++....+..      .+|...|++|+|+|+|++|++|    +.|+.|++|
T Consensus       108 ~~~l~wS~--~n~lAvgl-d~tV~lWd~~tg~~~~~~~~------~~~~~~V~sv~fspdg~~lasg----s~Dg~v~iW  174 (420)
T 4gga_A          108 LNLVDWSS--GNVLAVAL-DNSVYLWSASSGDILQLLQM------EQPGEYISSVAWIKEGNYLAVG----TSSAEVQLW  174 (420)
T ss_dssp             CBCEEECT--TSEEEEEE-TTEEEEEETTTCCEEEEEEC------CSTTCCEEEEEECTTSSEEEEE----ETTSCEEEE
T ss_pred             ceeEEECC--CCEEEEEe-CCEEEEEECCCCCEEEEEEe------cCCCCcEEEEEECCCCCEEEEE----ECCCeEEEE
Confidence            57899997  35788876 89999999999876655432      4788899999999999999999    999999999


Q ss_pred             ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203          306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ  385 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  385 (540)
                      |+.++   ..+..+.+   |...+.+++++   +.+|++|+.|+.+++||......    ......+|...+..+.|+|+
T Consensus       175 d~~~~---~~~~~~~~---h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~----~~~~~~~h~~~~~~~~~~~~  241 (420)
T 4gga_A          175 DVQQQ---KRLRNMTS---HSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPD  241 (420)
T ss_dssp             ETTTT---EEEEEECC---CSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTT
T ss_pred             EcCCC---cEEEEEeC---CCCceEEEeeC---CCEEEEEeCCCceeEeeecccce----eeEEecccccceeeeeecCC
Confidence            99986   56666665   67789888885   57999999999999999987653    33334669999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCee-----eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          386 KQIVLSAGADKRIIGFDAGVGRAD-----FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       386 ~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      +.++++++.|+.+++||...++..     ........+.++.|+|.+.....+++|+.|++|++||+.++......    
T Consensus       242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~----  317 (420)
T 4gga_A          242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----  317 (420)
T ss_dssp             SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE----
T ss_pred             CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee----
Confidence            999999999999999999886542     22445678899999998876444455678999999999988754432    


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEe--CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          461 QESSESQSALINQSWSPDGLYITSGS--ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                          .+...+.++.|+|+++.+++++  .||.|+|||+.+  ++++..+.+|.+.|++++|+|||++|+|||.||+|+||
T Consensus       318 ----~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~--~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW  391 (420)
T 4gga_A          318 ----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW  391 (420)
T ss_dssp             ----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             ----ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence                2345789999999999988765  789999999998  78999999999999999999999999999999999999


Q ss_pred             eC
Q 009203          539 KI  540 (540)
Q Consensus       539 ~l  540 (540)
                      |+
T Consensus       392 dv  393 (420)
T 4gga_A          392 RC  393 (420)
T ss_dssp             CC
T ss_pred             EC
Confidence            86

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-39  Score=319.62  Aligned_cols=296  Identities=14%  Similarity=0.136  Sum_probs=224.7

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC--CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR--GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~--~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +..|.++|++++|+|+ +.+|++|+.|+.|+|||+.++  +....+        .+|...|.+++|+|++++|+++    
T Consensus         7 ~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------~~h~~~v~~~~~s~~~~~l~s~----   73 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTF--------SDHDKIVTCVDWAPKSNRIVTC----   73 (377)
T ss_dssp             EEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCB--------CCCSSCEEEEEECTTTCCEEEE----
T ss_pred             EecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEE--------ecCCceEEEEEEeCCCCEEEEE----
Confidence            3457789999999995 999999999999999999876  333333        5899999999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc-CCc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL-HSS  375 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~  375 (540)
                      +.|+.|++||+.++........+..   |...|.+++|+| ++.+|++|+.|+.|++||+++++.......+  .. |..
T Consensus        74 s~d~~v~vwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~h~~  147 (377)
T 3dwl_C           74 SQDRNAYVYEKRPDGTWKQTLVLLR---LNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHL--KRPLRS  147 (377)
T ss_dssp             ETTSSEEEC------CCCCEEECCC---CSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEE--CSSCCS
T ss_pred             eCCCeEEEEEcCCCCceeeeeEecc---cCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEe--ecccCC
Confidence            9999999999998641223444443   678899999999 9999999999999999999987631112222  33 899


Q ss_pred             ceeEEEeccCCCEEEEEeCCCeEEEEECCC------------------CCeeeeeccCccEEEEeecCCCCCceEEEEEc
Q 009203          376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGV------------------GRADFKHQIESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      .|.+++|+|++++|++++.|+.|++||++.                  ++.+..+.+...+.++.|+|++   .+|++++
T Consensus       148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~  224 (377)
T 3dwl_C          148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSG---NALAYAG  224 (377)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTS---SCEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCC---CEEEEEe
Confidence            999999999999999999999999999863                  2233334556779999999987   6899999


Q ss_pred             CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccc-------------
Q 009203          438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPS-------------  504 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~-------------  504 (540)
                      .||.|++||+.++......   ...+.+|...|.+++|+|+|++|++|+.++.+ +|+.........             
T Consensus       225 ~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T 3dwl_C          225 HDSSVTIAYPSAPEQPPRA---LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT  300 (377)
T ss_dssp             TTTEEC-CEECSTTSCEEE---CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred             CCCcEEEEECCCCCCccee---eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence            9999999999988753221   12456788999999999999999999766655 776652110000             


Q ss_pred             ---------------------c----------------cccccccceeEEEEcCCC-C---EEEEEEcCCcEEEEeC
Q 009203          505 ---------------------Q----------------SIRAHQKRVFKAVWHYSH-P---LLISISSDLNIGLHKI  540 (540)
Q Consensus       505 ---------------------~----------------~~~~h~~~i~~l~~s~~~-~---~l~s~~~dg~v~iw~l  540 (540)
                                           .                ....|.+.|+++++.+.. .   .|+|||.||.|+|||+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                                 0                011399999999976644 3   6999999999999996

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.9e-39  Score=310.60  Aligned_cols=298  Identities=10%  Similarity=0.072  Sum_probs=224.4

Q ss_pred             CceEEEEEecCCCcEEEEEeCC-------ceEEEEEcCCCCCcc--eeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203          224 RKLRSLSLNPVNEQLFVTSALD-------GVIRLWQLQSRGSGA--SLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT  294 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~d-------g~v~iw~~~~~~~~~--~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~  294 (540)
                      -+|+|++|+|| +++|++|+.+       +.|++|++.......  .+.........+|...|.+++++  ++.++++..
T Consensus        15 ~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           15 YPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            48999999996 9999999764       359999998665422  11111112225788889888765  567776622


Q ss_pred             c-------CCCCCeEEEEecCCCCCce-eEEeec--CCCCcccceeEEEEeCCCCCEEEEEe--cCCcEEEEecCCCCCc
Q 009203          295 A-------DSGDSQISVLNLNKTKGRA-CVTFLD--DKPHVKGIINSIIFLPWENPCFATGG--SDHAVVLWSERDAEDS  362 (540)
Q Consensus       295 ~-------~~~d~~i~vwd~~~~~~~~-~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~  362 (540)
                      .       ++.|+.+++|++....... ......  ....+...+.+++|+| ||+++++++  .|++|+|||+.+++..
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~  170 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEK  170 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEE
Confidence            1       2568899999987653321 111111  1122345688999999 999887554  6899999999998752


Q ss_pred             cccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee---eccCccEEEEeecCCCCCceEEEEEcCC
Q 009203          363 WKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK---HQIESKCMSVLPNPCDFNLFMVQTGTPG  439 (540)
Q Consensus       363 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d  439 (540)
                         ..   ..|...|.+++|+|+|+++++++.+ .+++|+..++..+..   ......+.++.|+|++   .++++++.|
T Consensus       171 ---~~---~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg---~~l~~~s~d  240 (365)
T 4h5i_A          171 ---FE---IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD---TVLIAASLK  240 (365)
T ss_dssp             ---EE---EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT---EEEEEEEES
T ss_pred             ---EE---eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC---CEEEEEecC
Confidence               22   2377889999999999999999865 567777777766543   2345668899999988   788888877


Q ss_pred             C----eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccc-ccccccce
Q 009203          440 R----QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQS-IRAHQKRV  514 (540)
Q Consensus       440 g----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~h~~~i  514 (540)
                      +    .+++||+.........   ...+.+|...|++++|+|||++||+|+.|+.|+|||+.+  ++++.. +.+|...|
T Consensus       241 ~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~--~~~~~~~~~gH~~~V  315 (365)
T 4h5i_A          241 KGKGIVLTKISIKSGNTSVLR---SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD--LSMSKIFKQAHSFAI  315 (365)
T ss_dssp             SSCCEEEEEEEEETTEEEEEE---EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT--TEEEEEETTSSSSCE
T ss_pred             CcceeEEeecccccceeccee---eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC--CcEEEEecCcccCCE
Confidence            7    6888998766533221   124567889999999999999999999999999999998  777776 47899999


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          515 FKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       515 ~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++|+|+|||++|||||.|++|+||+|
T Consensus       316 ~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          316 TEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            99999999999999999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-38  Score=300.08  Aligned_cols=282  Identities=16%  Similarity=0.182  Sum_probs=236.7

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      ..+.+|.+.|++++| |+ +.+|++|+.||.|++||+.++.....+        ..|...|.+++|+|++++|+++    
T Consensus        12 ~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~----   77 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQWLGTVV--------YTGQGFLNSVCYDSEKELLLFG----   77 (313)
T ss_dssp             EEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSEEEEEE--------EECSSCEEEEEEETTTTEEEEE----
T ss_pred             HHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCEEEEEe--------ecCCccEEEEEECCCCCEEEEe----
Confidence            346899999999999 85 889999999999999999876655444        4678899999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|+.|++|++........+..+..   |...|.+++|.   +.++++++.||.|++||  .+.     .......|...
T Consensus        78 ~~dg~i~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~-----~~~~~~~~~~~  144 (313)
T 3odt_A           78 GKDTMINGVPLFATSGEDPLYTLIG---HQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGS-----LVYNLQAHNAS  144 (313)
T ss_dssp             ETTSCEEEEETTCCTTSCC-CEECC---CSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTE-----EEEEEECCSSC
T ss_pred             cCCCeEEEEEeeecCCCCcccchhh---cccCEEEEEec---CCEEEEEeCCCCEEEEc--CCc-----EEEecccCCCc
Confidence            9999999999987654455555554   67889999994   57999999999999999  322     22233458999


Q ss_pred             eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      +.+++|.| +++++++++.||.|++||...............+.++.++|++   . +++++.||.|++||+++++... 
T Consensus       145 v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~---~-~~~~~~dg~i~i~d~~~~~~~~-  219 (313)
T 3odt_A          145 VWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDG---H-FISCSNDGLIKLVDMHTGDVLR-  219 (313)
T ss_dssp             EEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETT---E-EEEEETTSEEEEEETTTCCEEE-
T ss_pred             eeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCC---e-EEEccCCCeEEEEECCchhhhh-
Confidence            99999988 9999999999999999995433323333367788999999987   4 9999999999999999876543 


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI  535 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v  535 (540)
                            .+.+|...|++++|+|++ .|++++.||.|++||+.+  ++++..+..|...|++++|+|+++ +++++.||.|
T Consensus       220 ------~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i  289 (313)
T 3odt_A          220 ------TYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN--GSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLV  289 (313)
T ss_dssp             ------EEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT--CCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCE
T ss_pred             ------hhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCC--CceeEEEeccCceEEEEEEccCCC-EEEEeCCCcE
Confidence                  345788999999999999 688999999999999998  788888999999999999999998 6679999999


Q ss_pred             EEEeC
Q 009203          536 GLHKI  540 (540)
Q Consensus       536 ~iw~l  540 (540)
                      ++||+
T Consensus       290 ~iw~~  294 (313)
T 3odt_A          290 RIFSQ  294 (313)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            99985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-38  Score=319.41  Aligned_cols=302  Identities=16%  Similarity=0.159  Sum_probs=234.9

Q ss_pred             ccccCceEEEEEec-CCCcEEEEEeCCceEEEEEcCC---CCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          220 SLHKRKLRSLSLNP-VNEQLFVTSALDGVIRLWQLQS---RGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       220 ~~h~~~V~~l~~sp-d~~~~l~tg~~dg~v~iw~~~~---~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      .+|.+.|++++|+| + +.+|++|+.||+|+|||+.+   +........      .+|...|.+++|+|++++|+++   
T Consensus        60 ~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~---  129 (437)
T 3gre_A           60 ENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT------YDCSSTVTQITMIPNFDAFAVS---  129 (437)
T ss_dssp             TTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE------EECSSCEEEEEECTTSSEEEEE---
T ss_pred             cCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeee------ccCCCCEEEEEEeCCCCEEEEE---
Confidence            79999999999999 7 89999999999999999976   331111100      1588999999999999999999   


Q ss_pred             CCCCCeEEEEecC---CCCCc-----eeEEeecCCC-CcccceeEEE--EeCCCCCEEEEEecCCcEEEEecCCCCCccc
Q 009203          296 DSGDSQISVLNLN---KTKGR-----ACVTFLDDKP-HVKGIINSII--FLPWENPCFATGGSDHAVVLWSERDAEDSWK  364 (540)
Q Consensus       296 ~~~d~~i~vwd~~---~~~~~-----~~~~~~~~~~-~~~~~v~~~~--~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  364 (540)
                       +.|+.|++||+.   ++...     ..+..+...+ .+...+.++.  +++ ++.+|++|+.|+.|++||+++++.   
T Consensus       130 -s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---  204 (437)
T 3gre_A          130 -SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLER---  204 (437)
T ss_dssp             -ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCE---
T ss_pred             -eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCee---
Confidence             999999999995   33111     0111111111 0345577777  557 889999999999999999999875   


Q ss_pred             cceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCC-CCCceEEEEEcCCCe
Q 009203          365 PKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPC-DFNLFMVQTGTPGRQ  441 (540)
Q Consensus       365 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~  441 (540)
                      ...+....|...|++++|+|++.+|++|+.||.|++||+++++.+...  .....+.++.++|. .+.+.+|++|+.||.
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~  284 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF  284 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred             eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence            333332237899999999999999999999999999999998887754  45567888866653 223479999999999


Q ss_pred             EEEEECCCCcceeeeecccc-----------------ccCc--cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc
Q 009203          442 LRLYDIRLRQTEIHAFGWKQ-----------------ESSE--SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK  502 (540)
Q Consensus       442 v~i~d~~~~~~~~~~~~~~~-----------------~~~~--~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~  502 (540)
                      |++||+.++.......++..                 .+.+  |...|++++|+ ++++|++|+.||.|++||+.+  ++
T Consensus       285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~--~~  361 (437)
T 3gre_A          285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE--LS  361 (437)
T ss_dssp             EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC--GG
T ss_pred             EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC--cc
Confidence            99999998775443332110                 1223  88889999999 889999999999999999987  45


Q ss_pred             ccccccc-------------------------------------cccceeEEEEcCC--CCEEEEEEcCCcEEEEe
Q 009203          503 PSQSIRA-------------------------------------HQKRVFKAVWHYS--HPLLISISSDLNIGLHK  539 (540)
Q Consensus       503 ~~~~~~~-------------------------------------h~~~i~~l~~s~~--~~~l~s~~~dg~v~iw~  539 (540)
                      ....+.+                                     |...|++++|+++  +.+|++|+.||.|+||+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          362 SSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             GCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            4444443                                     8899999999998  77999999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.8e-37  Score=297.97  Aligned_cols=294  Identities=14%  Similarity=0.205  Sum_probs=240.6

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------hh
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------HV  218 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------~~  218 (540)
                      .++.||...|+++++.|..+                              ..+++++.|++|++|+..          ..
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~------------------------------~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~   81 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFP------------------------------DMILSASRDKTIIMWKLTRDETNYGIPQRA   81 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCT------------------------------TEEEEEETTSCEEEEEECCSSSCSEEEEEE
T ss_pred             EEECCccCCEEEEEEeCCCC------------------------------CEEEEEcCCCeEEEEECCCCCcccceeeEE
Confidence            46789999999999998732                              257889999999999753          45


Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +.+|.+.|++++|+|| +.+|++|+.|+.|++|+..........        ..+...+..+.+++++.+|+++    +.
T Consensus        82 l~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~s~----s~  148 (340)
T 4aow_A           82 LRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDLTTGTTTRRF--------VGHTKDVLSVAFSSDNRQIVSG----SR  148 (340)
T ss_dssp             ECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECTTSSCEEEE----ET
T ss_pred             EeCCCCCEEEEEECCC-CCEEEEEcccccceEEeecccceeeee--------cCCCCceeEEEEeecCccceee----cC
Confidence            7899999999999996 999999999999999999887654444        3566778899999999999999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-CCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      |+.+++||+...  ........   .|...+.+++|++.. ..++++++.|+.|++||+++++.     .....+|.+.|
T Consensus       149 d~~~~~~d~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~-----~~~~~~h~~~v  218 (340)
T 4aow_A          149 DKTIKLWNTLGV--CKYTVQDE---SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-----KTNHIGHTGYL  218 (340)
T ss_dssp             TSCEEEECTTSC--EEEEECSS---SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE-----EEEECCCSSCE
T ss_pred             CCeEEEEEeCCC--ceEEEEec---cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce-----eeEecCCCCcE
Confidence            999999998864  12222222   367789999998732 35678999999999999998864     22335699999


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      ++++|+|++++|++++.||.|++||+++.+.+........+.++.++|++    .+++++.|+.|++||+++........
T Consensus       219 ~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~d~~i~iwd~~~~~~~~~~~  294 (340)
T 4aow_A          219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR----YWLCAATGPSIKIWDLEGKIIVDELK  294 (340)
T ss_dssp             EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS----SEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCC----ceeeccCCCEEEEEECCCCeEEEecc
Confidence            99999999999999999999999999999998888888889999999976    56677789999999998765433221


Q ss_pred             c--cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203          458 G--WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS  499 (540)
Q Consensus       458 ~--~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~  499 (540)
                      .  ......+|...|++++|+|+|++|++|+.||.|+|||+.++
T Consensus       295 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          295 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             CC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             ccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            1  11234578899999999999999999999999999999973

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.1e-38  Score=311.99  Aligned_cols=312  Identities=11%  Similarity=0.100  Sum_probs=246.2

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      .+++++.|+.+++|+..     ..+.+| ..+....|+|+ +.+|++|+.||.|++||+.++.....+        .+|.
T Consensus        70 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~h~  139 (420)
T 3vl1_A           70 HLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDSNFNLQREID--------QAHV  139 (420)
T ss_dssp             TEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECTTSCEEEEET--------TSSS
T ss_pred             eEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeCCCcceeeec--------cccc
Confidence            46677789999999765     345555 45555678885 899999999999999999876544333        5899


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      ..|++++|+|++++|+++    +.|+.|++||+.++.   .+..+.+   |.+.|.+++|+| ++.+|++++.|+.|++|
T Consensus       140 ~~v~~~~~~~~~~~l~s~----s~d~~i~iwd~~~~~---~~~~~~~---h~~~v~~~~~~~-~~~~l~s~~~d~~v~iw  208 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISS----SQDMQLKIWSVKDGS---NPRTLIG---HRATVTDIAIID-RGRNVLSASLDGTIRLW  208 (420)
T ss_dssp             SCEEEEEECTTSSEEEEE----ETTSEEEEEETTTCC---CCEEEEC---CSSCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred             CccEEEEECCCCCEEEEE----eCCCeEEEEeCCCCc---CceEEcC---CCCcEEEEEEcC-CCCEEEEEcCCCcEEEe
Confidence            999999999999999999    999999999999873   3455554   678899999999 99999999999999999


Q ss_pred             ecCCCCCccccceee-------------------cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec--
Q 009203          355 SERDAEDSWKPKALH-------------------RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ--  413 (540)
Q Consensus       355 d~~~~~~~~~~~~~~-------------------~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--  413 (540)
                      |+++++.........                   ...+...+.+++|+|++++|++++.||.|++||+++++.+....  
T Consensus       209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  288 (420)
T 3vl1_A          209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK  288 (420)
T ss_dssp             ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred             ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence            999887522211100                   01123556667778999999999999999999999988766543  


Q ss_pred             cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 009203          414 IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHL  493 (540)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~i  493 (540)
                      ....+.++.|+|++.  .+|++|+.||.|++||++++......+.     ..|...|+++.| +++++|++++.||.|++
T Consensus       289 ~~~~v~~~~~~~~~~--~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~-~~~~~l~s~~~d~~v~i  360 (420)
T 3vl1_A          289 FTCSCNSLTVDGNNA--NYIYAGYENGMLAQWDLRSPECPVGEFL-----INEGTPINNVYF-AAGALFVSSGFDTSIKL  360 (420)
T ss_dssp             TSSCEEEEEECSSCT--TEEEEEETTSEEEEEETTCTTSCSEEEE-----ESTTSCEEEEEE-ETTEEEEEETTTEEEEE
T ss_pred             cCCCceeEEEeCCCC--CEEEEEeCCCeEEEEEcCCCcCchhhhh-----ccCCCCceEEEe-CCCCEEEEecCCccEEE
Confidence            457899999999873  1899999999999999998765333221     125667888855 57889999999999999


Q ss_pred             EeccCCCC-------cccccccccccceeEEEEcCCCC---EEEEEEcCCcEEEEeC
Q 009203          494 FDIRYSAN-------KPSQSIRAHQKRVFKAVWHYSHP---LLISISSDLNIGLHKI  540 (540)
Q Consensus       494 wd~~~~~~-------~~~~~~~~h~~~i~~l~~s~~~~---~l~s~~~dg~v~iw~l  540 (540)
                      |++.....       .....+..|.+.|.+++|+|++.   .|++++.+|.+.+|++
T Consensus       361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~  417 (420)
T 3vl1_A          361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNL  417 (420)
T ss_dssp             EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred             EeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence            99986311       11223456888999999999999   7888889999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.6e-37  Score=292.39  Aligned_cols=279  Identities=16%  Similarity=0.238  Sum_probs=234.3

Q ss_pred             eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203          226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL  305 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw  305 (540)
                      .++|+||++ + +||+|. |++|+|||+.+++....+..      .+|...|++++|+|++++|++|    +.|+.|++|
T Consensus        28 ~~~l~WS~~-~-~lAvg~-D~tV~iWd~~tg~~~~~~~~------~~~~~~V~~v~~~~~~~~l~sg----s~Dg~v~iw   94 (318)
T 4ggc_A           28 LNLVDWSSG-N-VLAVAL-DNSVYLWSASSGDILQLLQM------EQPGEYISSVAWIKEGNYLAVG----TSSAEVQLW   94 (318)
T ss_dssp             CBCEEECTT-S-EEEEEE-TTEEEEEETTTCCEEEEEEC------CSTTCCEEEEEECTTSSEEEEE----ETTSEEEEE
T ss_pred             ceEEEECCC-C-EEEEEe-CCEEEEEECCCCCEEEEEEe------cCCCCeEEEEEECCCCCEEEEE----ECCCcEEEe
Confidence            478999984 4 777765 99999999999887665532      4788899999999999999999    999999999


Q ss_pred             ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203          306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ  385 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  385 (540)
                      |+.++   +++..+.+   |...+.++.+   ++..+++|+.++.+++|+......    ......+|...+..+.|+++
T Consensus        95 ~~~~~---~~~~~~~~---h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  161 (318)
T 4ggc_A           95 DVQQQ---KRLRNMTS---HSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPD  161 (318)
T ss_dssp             ETTTT---EEEEEEEC---CSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTT
T ss_pred             ecCCc---eeEEEecC---ccceEEEeec---CCCEEEEEecCCceEeeecCCCce----eEEEEcCccCceEEEEEcCC
Confidence            99986   55666665   5666776666   557999999999999999988763    33334669999999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCee-----eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          386 KQIVLSAGADKRIIGFDAGVGRAD-----FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       386 ~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      +++|++++.||.|++||+++++..     ........+..+.+.|.+.....+++++.++.|++||.........     
T Consensus       162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-----  236 (318)
T 4ggc_A          162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-----  236 (318)
T ss_dssp             SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-----
T ss_pred             CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-----
Confidence            999999999999999999986642     2234456788899999887766677889999999999987765332     


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEe--CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          461 QESSESQSALINQSWSPDGLYITSGS--ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                         ..+...+..+.|+|++..+++++  .|+.|+|||+.+  ++++..+.+|.+.|++++|+|+|++|+|||.||+|+||
T Consensus       237 ---~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          237 ---VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             ---EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             ---ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence               23566899999999999887654  799999999998  78899999999999999999999999999999999999


Q ss_pred             eC
Q 009203          539 KI  540 (540)
Q Consensus       539 ~l  540 (540)
                      |+
T Consensus       312 d~  313 (318)
T 4ggc_A          312 RC  313 (318)
T ss_dssp             CC
T ss_pred             EC
Confidence            96

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.4e-37  Score=350.85  Aligned_cols=336  Identities=15%  Similarity=0.143  Sum_probs=277.1

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccccc
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHK  223 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~  223 (540)
                      ..+.+|...|.++++.|...                               .+++++.|++|++|+..     ..+.+|.
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~-------------------------------~l~s~~~d~~i~vw~~~~~~~~~~~~~h~  657 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQ-------------------------------RIASCGADKTLQVFKAETGEKLLDIKAHE  657 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSS-------------------------------EEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEecccccEEEEEECCCCC-------------------------------EEEEEeCCCeEEEEECCCCCEEEEeccCC
Confidence            35678999999999998743                               57788899999999764     4578999


Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC--CCeEEEEeecCCCCCe
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTADSGDSQ  301 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~~~~d~~  301 (540)
                      +.|++++|+|| +.+|++|+.||.|+|||+.+++....+        .+|...|.+++|+|+  +.+++++    +.|+.
T Consensus       658 ~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~sg----~~d~~  724 (1249)
T 3sfz_A          658 DEVLCCAFSSD-DSYIATCSADKKVKIWDSATGKLVHTY--------DEHSEQVNCCHFTNKSNHLLLATG----SNDFF  724 (1249)
T ss_dssp             SCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECSSSSCCEEEEE----ETTSC
T ss_pred             CCEEEEEEecC-CCEEEEEeCCCeEEEEECCCCceEEEE--------cCCCCcEEEEEEecCCCceEEEEE----eCCCe
Confidence            99999999996 899999999999999999998876666        578999999999994  5588898    99999


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc---------------
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK---------------  366 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------  366 (540)
                      |++||+.++   .+...+.+   |.+.|.+++|+| ++.+|++|+.||.|++||+.++.......               
T Consensus       725 v~vwd~~~~---~~~~~~~~---h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (1249)
T 3sfz_A          725 LKLWDLNQK---ECRNTMFG---HTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV  797 (1249)
T ss_dssp             EEEEETTSS---SEEEEECC---CSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CC
T ss_pred             EEEEECCCc---chhheecC---CCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccc
Confidence            999999986   45666664   678899999999 99999999999999999997664211100               


Q ss_pred             -----------------------------------eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009203          367 -----------------------------------ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK  411 (540)
Q Consensus       367 -----------------------------------~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  411 (540)
                                                         .....+|...|.+++|+|++.++++++.||.|++||+.++..+..
T Consensus       798 ~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~  877 (1249)
T 3sfz_A          798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD  877 (1249)
T ss_dssp             CCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             cceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee
Confidence                                               001125788999999999999999999999999999999887665


Q ss_pred             e-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee----------------------------eee--ccc
Q 009203          412 H-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI----------------------------HAF--GWK  460 (540)
Q Consensus       412 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~----------------------------~~~--~~~  460 (540)
                      . .+...+.++.|+|++   .++++++.||.|++||+.+.....                            ...  ...
T Consensus       878 ~~~h~~~v~~v~~spdg---~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  954 (1249)
T 3sfz_A          878 CRGHLSWVHGVMFSPDG---SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG  954 (1249)
T ss_dssp             ECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred             cCCCccceEEEEECCCC---CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence            4 455778999999987   689999999999999976321000                            000  000


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .....+...+.+++|+|+|+++++|+.||.|++||+.+  +..+..+.+|...|++++|+|+|++|++++.||.|++||+
T Consensus       955 ~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A          955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN--NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp             CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT--TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred             eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC--CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            00112345799999999999999999999999999998  6788888899999999999999999999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.3e-37  Score=292.49  Aligned_cols=268  Identities=14%  Similarity=0.182  Sum_probs=205.8

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC--CCcceeecccccCCCCCCCCceeEEEecC--CCeEEEEe
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR--GSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAH  293 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~--~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~  293 (540)
                      ++.+|.+.|++++|+|+ |++||+|+.|++|+|||+...  +...++        .+|.+.|.+++|+++  +++|+++ 
T Consensus         4 ~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l--------~gH~~~V~~v~~s~~~~g~~l~s~-   73 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTL--------TGHEGPVWRVDWAHPKFGTILASC-   73 (297)
T ss_dssp             ECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEE--------CCCSSCEEEEEECCGGGCSEEEEE-
T ss_pred             eccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEE--------ccccCCeEEEEecCCCcCCEEEEE-
Confidence            46799999999999996 999999999999999999753  333333        589999999999863  8899999 


Q ss_pred             ecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccceeecc
Q 009203          294 TADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPKALHRN  371 (540)
Q Consensus       294 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  371 (540)
                         +.|++|++||+.++.. ..+..+..   |...|.+++|+| +  +.+|++|+.|+.|++||++++..   .......
T Consensus        74 ---s~D~~v~iWd~~~~~~-~~~~~~~~---h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~---~~~~~~~  142 (297)
T 2pm7_B           74 ---SYDGKVMIWKEENGRW-SQIAVHAV---HSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGT---TSPIIID  142 (297)
T ss_dssp             ---ETTTEEEEEEBSSSCB-CCCEEECC---CSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSC---BCCEEEE
T ss_pred             ---cCCCEEEEEEcCCCce-EEEEEeec---CCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCc---eeeeeee
Confidence               9999999999987532 22334443   667899999999 6  88999999999999999987642   1122335


Q ss_pred             cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      +|...|.+++|+|++..-     ++.        +               ...+.+   .+|++|+.|++|++||+++..
T Consensus       143 ~h~~~v~~~~~~p~~~~~-----~~~--------~---------------~~~~~~---~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          143 AHAIGVNSASWAPATIEE-----DGE--------H---------------NGTKES---RKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             CCSSCEEEEEECCCC----------------------------------------C---CEEEEEETTSCEEEEEEETTT
T ss_pred             cccCccceEeecCCcccc-----ccc--------C---------------CCCCCc---ceEEEEcCCCcEEEEEEcCCC
Confidence            699999999999975311     000        0               000111   478889999999999987655


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCC---CEEEEEeCCCcEEEEeccCCCCcc-cccc--cccccceeEEEEcCCCCE
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDG---LYITSGSADPVIHLFDIRYSANKP-SQSI--RAHQKRVFKAVWHYSHPL  525 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~sg~~dg~i~iwd~~~~~~~~-~~~~--~~h~~~i~~l~~s~~~~~  525 (540)
                      .....   ...+.+|...|.+++|+|++   .+|++|+.|+.|+|||+....... ...+  ..|...|++++|+|+|++
T Consensus       192 ~~~~~---~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  268 (297)
T 2pm7_B          192 QTYVL---ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV  268 (297)
T ss_dssp             TEEEE---EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred             ceEEE---EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE
Confidence            32211   12457899999999999985   899999999999999998632211 1122  467889999999999999


Q ss_pred             EEEEEcCCcEEEEeC
Q 009203          526 LISISSDLNIGLHKI  540 (540)
Q Consensus       526 l~s~~~dg~v~iw~l  540 (540)
                      |++++.||.|+||++
T Consensus       269 las~~~D~~v~lw~~  283 (297)
T 2pm7_B          269 LALSGGDNKVTLWKE  283 (297)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEcCCCcEEEEEE
Confidence            999999999999973

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-38  Score=320.21  Aligned_cols=314  Identities=11%  Similarity=0.068  Sum_probs=222.0

Q ss_pred             eEEecCCCCeEEEeccc---------hhcccccCceEEEEEecC-----CCcEEEEEeCCceEEEEEcCCCCCcce-e--
Q 009203          200 LVRTSASPATIHCHTSN---------HVSSLHKRKLRSLSLNPV-----NEQLFVTSALDGVIRLWQLQSRGSGAS-L--  262 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~---------~~~~~h~~~V~~l~~spd-----~~~~l~tg~~dg~v~iw~~~~~~~~~~-~--  262 (540)
                      .+++++.|++|++|+..         .++.+|.+.|++|+|+|+     ++.+||+|+.||+|+|||+..+..... .  
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            46788999999999753         125678899999999995     257999999999999999987653210 0  


Q ss_pred             ecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEE--EEeCCCC-
Q 009203          263 LSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSI--IFLPWEN-  339 (540)
Q Consensus       263 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~p~~~-  339 (540)
                      .........+|...|++++|++++ .|++|    +.||+|++||+.++.  .....+..   |...|.+|  .|+| ++ 
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~~~-~lasg----s~DgtV~lWD~~~~~--~~~~~~~~---H~~~V~sv~~~~s~-~g~  323 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLSPT-TVVCG----FKNGFVAEFDLTDPE--VPSFYDQV---HDSYILSVSTAYSD-FED  323 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESSSS-EEEEE----ETTSEEEEEETTBCS--SCSEEEEC---SSSCEEEEEEECCT-TSC
T ss_pred             ecCceEEEEcCCCCEEEEEecCCC-eEEEE----eCCCEEEEEECCCCC--CceEEeec---ccccEEEEEEEcCC-CCC
Confidence            000001115899999999999864 89999    999999999998752  22334443   67889999  4667 77 


Q ss_pred             CEEEEEecCCcEEEEecCCCCCccccceeecccCC--cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCc
Q 009203          340 PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS--SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIES  416 (540)
Q Consensus       340 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~  416 (540)
                      .+|++|+.|++|+|||++++++   ...+.  +|.  ..|.+++|+|++..+++++.|++|++||++++.++.. ..+..
T Consensus       324 ~~laS~S~D~tvklWD~~~~~~---~~~~~--~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~  398 (524)
T 2j04_B          324 TVVSTVAVDGYFYIFNPKDIAT---TKTTV--SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET  398 (524)
T ss_dssp             CEEEEEETTSEEEEECGGGHHH---HCEEE--EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS
T ss_pred             eEEEEeccCCeEEEEECCCCCc---ccccc--cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC
Confidence            8999999999999999998764   22222  243  3588999999999999999999999999999887543 45667


Q ss_pred             cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES-SESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      .+.+++|+|++   .+|++|+.||+|++||+....  ....  .... ..+...+.+++|+|+|..+. ...+..+..|+
T Consensus       399 ~V~sva~Sp~g---~~l~Sgs~Dgtv~lwd~~~~~--~~~~--~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~  470 (524)
T 2j04_B          399 TITAIGVSRLH---PMVLAGSADGSLIITNAARRL--LHGI--KNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLT  470 (524)
T ss_dssp             CEEEEECCSSC---CBCEEEETTTEEECCBSCSST--TTCC--------CCCCEEEECBCCSSSCEEE-ECCCCCCCC--
T ss_pred             ceEEEEeCCCC---CeEEEEECCCEEEEEechHhh--cccc--ccCccceeeeEEEEeccCCCCCeEE-ccCCceecccc
Confidence            89999999987   689999999999999986431  1100  0000 01122578999999998553 22233333333


Q ss_pred             ccCCCCcccccccccccceeEEEEcCCCC---EEEEEEcCCcEEEEeC
Q 009203          496 IRYSANKPSQSIRAHQKRVFKAVWHYSHP---LLISISSDLNIGLHKI  540 (540)
Q Consensus       496 ~~~~~~~~~~~~~~h~~~i~~l~~s~~~~---~l~s~~~dg~v~iw~l  540 (540)
                      ..   +..+..+.+|...|++++|+|+++   .|++|+.||.|+||++
T Consensus       471 ~~---g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          471 VN---DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             --------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred             cC---CcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence            22   567788899999999999999964   9999999999999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.5e-36  Score=317.34  Aligned_cols=354  Identities=14%  Similarity=0.152  Sum_probs=269.5

Q ss_pred             CCcceeeEEEEcccccccC-CCCccEEEEeecC-C----CceEEecccccc-cceEEecC-----------CCCeEEEec
Q 009203          153 PAAHSIGIVKVKGEKSHRN-SSDSEIVEVRDRG-T----KRKFEQKEHREL-IPLVRTSA-----------SPATIHCHT  214 (540)
Q Consensus       153 ~h~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~-~----~~~~~~~~~~~~-v~~~~~~~-----------~d~~i~~~~  214 (540)
                      .|...|.++++.|...+.+ +.+..+. +|... .    .....+.+|... |.++++.+           .|++|++|+
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~~~~v~-v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPCGKSAF-VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEETTEEE-EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CccCceeEEEECCCCCEEEEecCCeEE-EEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            4667788889998877555 3333333 33322 2    345566788888 77777665           488999997


Q ss_pred             cc-------------hhcccccCceEEEEEecCCCcEEEEEeCC----ceEEEEEcCCCCCcceeecccccCCCCCCCCc
Q 009203          215 SN-------------HVSSLHKRKLRSLSLNPVNEQLFVTSALD----GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP  277 (540)
Q Consensus       215 ~~-------------~~~~~h~~~V~~l~~spd~~~~l~tg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V  277 (540)
                      ..             ..+.+|...|.+++|+|+ +++|++++.+    +.|.+||  .++....+        .+|...|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~--------~~~~~~v  163 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEGRDNFGVFISWD--SGNSLGEV--------SGHSQRI  163 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECCSSCSEEEEETT--TCCEEEEC--------CSCSSCE
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCC-CCEEEEeccCCCCccEEEEEE--CCCcceee--------ecCCccE
Confidence            62             246789999999999996 8999999988    7899998  33333333        5899999


Q ss_pred             eeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCccc---ceeEEEEeCCC-CCEEEEEecCCcEE
Q 009203          278 EDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKG---IINSIIFLPWE-NPCFATGGSDHAVV  352 (540)
Q Consensus       278 ~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~-~~~l~s~~~dg~i~  352 (540)
                      .+++|+|++. .|+++    +.|+.|++||+.++   ..+..+..   |..   .|.+++|+| + +.+|++++.||.|+
T Consensus       164 ~~~~~~~~~~~~l~~~----~~d~~v~vwd~~~~---~~~~~~~~---~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          164 NACHLKQSRPMRSMTV----GDDGSVVFYQGPPF---KFSASDRT---HHKQGSFVRDVEFSP-DSGEFVITVGSDRKIS  232 (615)
T ss_dssp             EEEEECSSSSCEEEEE----ETTTEEEEEETTTB---EEEEEECS---SSCTTCCEEEEEECS-TTCCEEEEEETTCCEE
T ss_pred             EEEEECCCCCcEEEEE----eCCCcEEEEeCCCc---ceeeeecc---cCCCCceEEEEEECC-CCCCEEEEEeCCCeEE
Confidence            9999999998 78998    99999999999875   55666664   456   899999999 7 99999999999999


Q ss_pred             EEecCCCCCccccceeecc---cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-----ccEEEEeec
Q 009203          353 LWSERDAEDSWKPKALHRN---LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-----SKCMSVLPN  424 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~  424 (540)
                      +||+.+++..   ..+ ..   .|...|.+++|+ ++.+|++++.|+.|++||+++++.+......     ..+.++.+.
T Consensus       233 vwd~~~~~~~---~~~-~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (615)
T 1pgu_A          233 CFDGKSGEFL---KYI-EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT  307 (615)
T ss_dssp             EEETTTCCEE---EEC-CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred             EEECCCCCEe---EEe-cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC
Confidence            9999988742   222 12   689999999999 9999999999999999999988876654433     344444443


Q ss_pred             CCCCCceEEEEEcCCCeEEEEECCCCcce---------------------------------------------------
Q 009203          425 PCDFNLFMVQTGTPGRQLRLYDIRLRQTE---------------------------------------------------  453 (540)
Q Consensus       425 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~---------------------------------------------------  453 (540)
                       ++   .++++++.|+.|++||+.++...                                                   
T Consensus       308 -~~---~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~  383 (615)
T 1pgu_A          308 -GN---GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA  383 (615)
T ss_dssp             -ET---TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCST
T ss_pred             -CC---CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCC
Confidence             11   24444444444444444321100                                                   


Q ss_pred             --------------------------------------------------------------------------------
Q 009203          454 --------------------------------------------------------------------------------  453 (540)
Q Consensus       454 --------------------------------------------------------------------------------  453 (540)
                                                                                                      
T Consensus       384 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  463 (615)
T 1pgu_A          384 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL  463 (615)
T ss_dssp             TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEE
T ss_pred             cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEee
Confidence                                                                                            


Q ss_pred             -----eeeecc-----c-cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcC
Q 009203          454 -----IHAFGW-----K-QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHY  521 (540)
Q Consensus       454 -----~~~~~~-----~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~  521 (540)
                           +..+..     . ..+.+|...|++++|+|+|++|++|+.||.|++||+.+  ++.+..+.+ |...|++++|+|
T Consensus       464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~h~~~v~~~~~sp  541 (615)
T 1pgu_A          464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS--REVKTSRWAFRTSKINAISWKP  541 (615)
T ss_dssp             TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEECCSCCCSSCEEEEEECC
T ss_pred             cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC--CcceeEeecCCCCceeEEEEcC
Confidence                 000000     0 24567888999999999999999999999999999997  777888887 999999999999


Q ss_pred             ----------CCCEEEEEEcCCcEEEEeC
Q 009203          522 ----------SHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       522 ----------~~~~l~s~~~dg~v~iw~l  540 (540)
                                ++++|++++.||.|++||+
T Consensus       542 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  570 (615)
T 1pgu_A          542 AEKGANEEEIEEDLVATGSLDTNIFIYSV  570 (615)
T ss_dssp             CC------CCSCCEEEEEETTSCEEEEES
T ss_pred             ccccccccccCCCEEEEEcCCCcEEEEEC
Confidence                      9999999999999999986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.6e-37  Score=326.13  Aligned_cols=293  Identities=16%  Similarity=0.230  Sum_probs=237.6

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------hh
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------HV  218 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------~~  218 (540)
                      ..+.+|...|.++++.|...                              ..+++++.|++|++|+..          ..
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~------------------------------~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~  425 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNA------------------------------DIIVSASRDKSIILWKLTKDDKAYGVAQRR  425 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCC------------------------------SEEEEEETTSEEEEEECCCSTTCSCEEEEE
T ss_pred             hhcccCCceeEEEEecCCCC------------------------------CEEEEEeCCCcEEEEEccCCCcccccccce
Confidence            35668999999988877532                              257889999999999653          34


Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +.+|.+.|++++|+|+ +++|++|+.||+|+|||+.++.....+        .+|...|.+++|+|++++|+++    +.
T Consensus       426 ~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~~~~~~~~--------~~h~~~v~~~~~s~~~~~l~s~----s~  492 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAAGVSTRRF--------VGHTKDVLSVAFSLDNRQIVSA----SR  492 (694)
T ss_dssp             EECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEECTTSSCEEEE----ET
T ss_pred             ecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcceeEE--------eCCCCCEEEEEEeCCCCEEEEE----eC
Confidence            7899999999999996 999999999999999999988766555        5899999999999999999999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCC--CEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN--PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      |++|++||....   ...........|...|.+++|+| ++  ..|++|+.|++|++||+++++.     .....+|.+.
T Consensus       493 D~~i~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~-----~~~~~~h~~~  563 (694)
T 3dm0_A          493 DRTIKLWNTLGE---CKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKL-----RSTLAGHTGY  563 (694)
T ss_dssp             TSCEEEECTTSC---EEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTCCE-----EEEECCCSSC
T ss_pred             CCEEEEEECCCC---cceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcE-----EEEEcCCCCC
Confidence            999999998743   33333333345778899999999 65  6899999999999999998764     2233569999


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      |++++|+|+|++|++++.||.|++||+++++.+........+.+++|+|++   .+++++ .++.|++||+.++......
T Consensus       564 v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~-~~~~i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNR---YWLCAA-TEHGIKIWDLESKSIVEDL  639 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSS---SEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCC---cEEEEE-cCCCEEEEECCCCCChhhh
Confidence            999999999999999999999999999999988887778889999999987   455554 5677999999987643322


Q ss_pred             ecccc------------ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          457 FGWKQ------------ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       457 ~~~~~------------~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      .....            ....+...+++++|+|+|++|++|+.||.|+||++.
T Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            11000            011122347899999999999999999999999986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.9e-36  Score=302.24  Aligned_cols=295  Identities=14%  Similarity=0.200  Sum_probs=248.0

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      .+++++.|++|++|+..     ..+.+|.+.|++++|++   .+|++|+.||+|++||+.+++....+        .+|.
T Consensus       131 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~--------~~h~  199 (445)
T 2ovr_B          131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTL--------YGHT  199 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEE--------CCCS
T ss_pred             EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEE--------CCCC
Confidence            57788899999999764     45789999999999984   48999999999999999988766655        5899


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      ..|.+++|+  ++.|+++    +.|+.|++||+.++   ..+..+..   |...|.+++|   ++.++++|+.||.|++|
T Consensus       200 ~~v~~~~~~--~~~l~s~----s~dg~i~~wd~~~~---~~~~~~~~---~~~~v~~~~~---~~~~l~~~~~dg~i~iw  264 (445)
T 2ovr_B          200 STVRCMHLH--EKRVVSG----SRDATLRVWDIETG---QCLHVLMG---HVAAVRCVQY---DGRRVVSGAYDFMVKVW  264 (445)
T ss_dssp             SCEEEEEEE--TTEEEEE----ETTSEEEEEESSSC---CEEEEEEC---CSSCEEEEEE---CSSCEEEEETTSCEEEE
T ss_pred             CcEEEEEec--CCEEEEE----eCCCEEEEEECCCC---cEEEEEcC---CcccEEEEEE---CCCEEEEEcCCCEEEEE
Confidence            999999996  5689999    99999999999986   44555554   5678999999   56889999999999999


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEE
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l  433 (540)
                      |+++++.   ..  ...+|...|.+++|  ++.++++++.||.|++||+++++.+.... ....+.++.+++     .++
T Consensus       265 d~~~~~~---~~--~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-----~~l  332 (445)
T 2ovr_B          265 DPETETC---LH--TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-----NIL  332 (445)
T ss_dssp             EGGGTEE---EE--EECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-----TEE
T ss_pred             ECCCCcE---eE--EecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC-----CEE
Confidence            9998764   22  22468999999999  78999999999999999999998876644 345566777754     489


Q ss_pred             EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc-----c
Q 009203          434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI-----R  508 (540)
Q Consensus       434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~  508 (540)
                      ++|+.||.|++||+++++......    ....|...|++++|+  +++|++|+.||.|++||+.+  ++.+..+     .
T Consensus       333 ~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~  404 (445)
T 2ovr_B          333 VSGNADSTVKIWDIKTGQCLQTLQ----GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT--GEFIRNLVTLESG  404 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC----STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT--CCEEEEEEECTTG
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEc----cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC--CceeeeeeccccC
Confidence            999999999999999877543321    223488899999995  68999999999999999998  6666666     4


Q ss_pred             ccccceeEEEEcCCCCEEEEEEcCCc----EEEEeC
Q 009203          509 AHQKRVFKAVWHYSHPLLISISSDLN----IGLHKI  540 (540)
Q Consensus       509 ~h~~~i~~l~~s~~~~~l~s~~~dg~----v~iw~l  540 (540)
                      .|.+.|++++|+|++.+|++|+.||+    |.|||+
T Consensus       405 ~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df  440 (445)
T 2ovr_B          405 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  440 (445)
T ss_dssp             GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             CCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence            78889999999999999999999998    999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.6e-36  Score=303.31  Aligned_cols=297  Identities=14%  Similarity=0.173  Sum_probs=243.2

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      .+++++.|++|++|+..     ..+.+|.+.|++++|+|+ + +|++|+.||+|++||+.+++....+        .+|.
T Consensus       134 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~--------~~h~  203 (464)
T 3v7d_B          134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVF--------EGHN  203 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEE--------CCCS
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEE--------CCCC
Confidence            57888999999999764     457899999999999995 5 9999999999999999988766655        5899


Q ss_pred             CCceeEEEe--cCCCeEEEEeecCCCCCeEEEEecCCCCCce--------------------eEEeecCCCCcccceeEE
Q 009203          275 RWPEDIAWH--PQGNSLFSAHTADSGDSQISVLNLNKTKGRA--------------------CVTFLDDKPHVKGIINSI  332 (540)
Q Consensus       275 ~~V~~~~~~--~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~  332 (540)
                      ..|.+++|+  +++.+|+++    +.|+.|++||+.++....                    .+..+.+   |...|.++
T Consensus       204 ~~v~~l~~~~~~~~~~l~s~----s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~  276 (464)
T 3v7d_B          204 STVRCLDIVEYKNIKYIVTG----SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG---HMASVRTV  276 (464)
T ss_dssp             SCEEEEEEEESSSCEEEEEE----ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC---CSSCEEEE
T ss_pred             CccEEEEEecCCCCCEEEEE----cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC---ccceEEEE
Confidence            999999998  577899999    999999999998764221                    1333333   56667777


Q ss_pred             EEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee
Q 009203          333 IFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH  412 (540)
Q Consensus       333 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  412 (540)
                        ++ ++.++++|+.||.|++||+.+++.     .....+|...|.+++|+|+++++++++.||.|++||+++++.+...
T Consensus       277 --~~-~~~~l~~~~~d~~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  348 (464)
T 3v7d_B          277 --SG-HGNIVVSGSYDNTLIVWDVAQMKC-----LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  348 (464)
T ss_dssp             --EE-ETTEEEEEETTSCEEEEETTTTEE-----EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             --cC-CCCEEEEEeCCCeEEEEECCCCcE-----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence              45 778999999999999999998764     2223569999999999999999999999999999999999887765


Q ss_pred             c-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcE
Q 009203          413 Q-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVI  491 (540)
Q Consensus       413 ~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i  491 (540)
                      . +...+.++.+++     .++++++.||.|++||+.+.......        .+...+..++|+|++.+|++|+ ||.|
T Consensus       349 ~~h~~~v~~~~~~~-----~~l~s~s~dg~v~vwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~-dg~i  414 (464)
T 3v7d_B          349 QGHTALVGLLRLSD-----KFLVSAAADGSIRGWDANDYSRKFSY--------HHTNLSAITTFYVSDNILVSGS-ENQF  414 (464)
T ss_dssp             CCCSSCEEEEEECS-----SEEEEEETTSEEEEEETTTCCEEEEE--------ECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred             eCCCCcEEEEEEcC-----CEEEEEeCCCcEEEEECCCCceeeee--------cCCCCccEEEEEeCCCEEEEec-CCeE
Confidence            4 456778888875     48999999999999999987643321        2455778889999999999998 8999


Q ss_pred             EEEeccCCCCccccc-ccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          492 HLFDIRYSANKPSQS-IRAHQKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       492 ~iwd~~~~~~~~~~~-~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      ++||+.+  ++.+.. +..|...|++++|+ ...++++++.||.+.+|
T Consensus       415 ~iwd~~~--g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          415 NIYNLRS--GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             EEEETTT--CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             EEEECCC--CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            9999998  666664 66789999999997 34456666777766554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=326.96  Aligned_cols=319  Identities=10%  Similarity=0.016  Sum_probs=230.8

Q ss_pred             eEEecCCCCeEEEeccch----hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203          200 LVRTSASPATIHCHTSNH----VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR  275 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~~----~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~  275 (540)
                      .+++++.|++|++|+...    ....|...|++|+|+|  +++|++++.|++|+|||+.+++.+..+         .|..
T Consensus        31 ~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~~~~~---------~~~~   99 (902)
T 2oaj_A           31 LLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQKVLTTV---------FVPG   99 (902)
T ss_dssp             EEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTCSEEEEE---------ECSS
T ss_pred             EEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCCcEEEEE---------cCCC
Confidence            355667799999997651    2346889999999999  559999999999999999988766555         2456


Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE-ee-------cCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT-FL-------DDKPHVKGIINSIIFLPWENPCFATGGS  347 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~-~~-------~~~~~~~~~v~~~~~~p~~~~~l~s~~~  347 (540)
                      .|++++|+|++++|++|    +.||.|++||+.++.   +.. .+       .....|.+.|.+++|+|.++..|++|+.
T Consensus       100 ~V~~v~~sp~g~~l~sg----s~dg~V~lwd~~~~~---~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~  172 (902)
T 2oaj_A          100 KITSIDTDASLDWMLIG----LQNGSMIVYDIDRDQ---LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE  172 (902)
T ss_dssp             CEEEEECCTTCSEEEEE----ETTSCEEEEETTTTE---EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS
T ss_pred             CEEEEEECCCCCEEEEE----cCCCcEEEEECCCCc---cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC
Confidence            79999999999999999    999999999998762   211 11       1223467889999999955678999999


Q ss_pred             CCcEEEEecCCCCCccccceeec----------------ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee
Q 009203          348 DHAVVLWSERDAEDSWKPKALHR----------------NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK  411 (540)
Q Consensus       348 dg~i~iwd~~~~~~~~~~~~~~~----------------~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  411 (540)
                      ||.| +||+++++..   ..+..                ..|...|++++|+|+|.+|++++.||.|++||+++++++..
T Consensus       173 dg~v-lWd~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          173 YVTL-TYSLVENEIK---QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA  248 (902)
T ss_dssp             SCEE-EEETTTTEEE---EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             CCcE-EEECCCCceE---EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence            9999 9999987642   22211                12457899999999999999999999999999998877542


Q ss_pred             ec-------------------cCccEEEEeecCCC-CC-ceEEEEE----------------------------------
Q 009203          412 HQ-------------------IESKCMSVLPNPCD-FN-LFMVQTG----------------------------------  436 (540)
Q Consensus       412 ~~-------------------~~~~~~~~~~~~~~-~~-~~~l~~~----------------------------------  436 (540)
                      ..                   ....+.+++|++.. +. ..++++|                                  
T Consensus       249 r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~  328 (902)
T 2oaj_A          249 RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYY  328 (902)
T ss_dssp             ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHH
T ss_pred             EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhh
Confidence            10                   12246666664321 00 1233333                                  


Q ss_pred             ------------------------------------------cCCCeEEEEECCCCcceeeeec----------------
Q 009203          437 ------------------------------------------TPGRQLRLYDIRLRQTEIHAFG----------------  458 (540)
Q Consensus       437 ------------------------------------------~~dg~v~i~d~~~~~~~~~~~~----------------  458 (540)
                                                                +.||.|++||+.++........                
T Consensus       329 ~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~  408 (902)
T 2oaj_A          329 ANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSM  408 (902)
T ss_dssp             HSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEE
T ss_pred             cCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEE
Confidence                                                      3345555555543321110000                


Q ss_pred             ------------------cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc---------cccc
Q 009203          459 ------------------WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI---------RAHQ  511 (540)
Q Consensus       459 ------------------~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~---------~~h~  511 (540)
                                        ....+.+|...+.+++|+|+|++|++|+.||+|++||+..+.......+         .+|.
T Consensus       409 ~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~  488 (902)
T 2oaj_A          409 AASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE  488 (902)
T ss_dssp             EEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS
T ss_pred             EEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCC
Confidence                              0011334555555667789999999999999999999987321111111         1788


Q ss_pred             cceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          512 KRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       512 ~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ..|++++|+|||++||+|+.||+|+||++
T Consensus       489 ~~V~svafspdg~~LAsgs~DgtV~lwd~  517 (902)
T 2oaj_A          489 LAVDKISFAAETLELAVSIETGDVVLFKY  517 (902)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CceeEEEecCCCCeEEEEecCcEEEEEEe
Confidence            89999999999999999999999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-36  Score=299.81  Aligned_cols=245  Identities=19%  Similarity=0.290  Sum_probs=201.6

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ..|++++|+|| +++|++|+.|+.|+|||+.+++....+        .+|...|.+++|+|++++|+++    +.|++|+
T Consensus       124 ~~v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~l~s~----s~d~~v~  190 (393)
T 1erj_A          124 LYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMIL--------QGHEQDIYSLDYFPSGDKLVSG----SGDRTVR  190 (393)
T ss_dssp             CBEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEEEEE----ETTSEEE
T ss_pred             eeEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEE--------ccCCCCEEEEEEcCCCCEEEEe----cCCCcEE
Confidence            35999999996 999999999999999999987765555        5899999999999999999999    9999999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccce--eecccCCcceeEEE
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA--LHRNLHSSAVMGVA  381 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~v~~l~  381 (540)
                      +||+.++   .+...+.    +...+.+++|+|.++.+|++|+.|+.|++||++++........  ....+|...|.+++
T Consensus       191 iwd~~~~---~~~~~~~----~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~  263 (393)
T 1erj_A          191 IWDLRTG---QCSLTLS----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  263 (393)
T ss_dssp             EEETTTT---EEEEEEE----CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             EEECCCC---eeEEEEE----cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence            9999986   4444444    2456999999997899999999999999999998764221110  01146899999999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCe------------ee-eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRA------------DF-KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      |+|+|++|++++.|+.|++||+++...            .. ...+...+.++.++|++   .+|++|+.|+.|++||+.
T Consensus       264 ~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND---EYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG---CEEEEEETTSEEEEEETT
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC---CEEEEEeCCCeEEEEECC
Confidence            999999999999999999999976432            11 23345678899999877   699999999999999999


Q ss_pred             CCcceeeeeccccccCccccCeEEEEEcC------CCCEEEEEeCCCcEEEEeccC
Q 009203          449 LRQTEIHAFGWKQESSESQSALINQSWSP------DGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ++....       .+.+|...|.+++|++      ++++|++|+.||.|+||++..
T Consensus       341 ~~~~~~-------~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          341 SGNPLL-------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             TCCEEE-------EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCeEEE-------EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            877543       4467999999999986      688999999999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-37  Score=309.81  Aligned_cols=280  Identities=18%  Similarity=0.217  Sum_probs=229.4

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ..+++++|+|+ +.+|++|+.||.|++||+.+.+....+        ..| ..+....|++++++|+++    +.|+.|+
T Consensus        57 ~~~~~~~~s~~-g~~l~~~~~d~~v~i~d~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~l~~~----~~dg~i~  122 (420)
T 3vl1_A           57 DAGKGNTFEKV-GSHLYKARLDGHDFLFNTIIRDGSKML--------KRA-DYTAVDTAKLQMRRFILG----TTEGDIK  122 (420)
T ss_dssp             BCCTTCEEEEE-ETTEEEEEETTEEEEEECCSEETTTTS--------CSC-CEEEEEEECSSSCEEEEE----ETTSCEE
T ss_pred             ccccceeeeec-CCeEEEEEcCCcEEEEEecccceeeEE--------ecC-CceEEEEEecCCCEEEEE----ECCCCEE
Confidence            34568999996 889999999999999999876654433        233 345556789999999999    9999999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      +||+.++   .....+..   |.+.|.+++|+| ++.+|++|+.|+.|++||+.+++.   ...+  .+|...|.+++|+
T Consensus       123 iwd~~~~---~~~~~~~~---h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~---~~~~--~~h~~~v~~~~~~  190 (420)
T 3vl1_A          123 VLDSNFN---LQREIDQA---HVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSN---PRTL--IGHRATVTDIAII  190 (420)
T ss_dssp             EECTTSC---EEEEETTS---SSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCC---CEEE--ECCSSCEEEEEEE
T ss_pred             EEeCCCc---ceeeeccc---ccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcC---ceEE--cCCCCcEEEEEEc
Confidence            9999875   45555544   678899999999 999999999999999999998875   2333  4699999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeeeecc----CccEEEE---------------------eecCCCCCceEEEEEcC
Q 009203          384 QQKQIVLSAGADKRIIGFDAGVGRADFKHQI----ESKCMSV---------------------LPNPCDFNLFMVQTGTP  438 (540)
Q Consensus       384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~---------------------~~~~~~~~~~~l~~~~~  438 (540)
                      |++.+|++++.||.|++||+++++.+.....    ...+.++                     .|+|++   .+|++|+.
T Consensus       191 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~  267 (420)
T 3vl1_A          191 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG---KYVIAGHV  267 (420)
T ss_dssp             TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT---EEEEEEET
T ss_pred             CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC---CEEEEEcC
Confidence            9999999999999999999999887665432    2333343                     445555   79999999


Q ss_pred             CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccCCCCcccccccc-cccceeE
Q 009203          439 GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFK  516 (540)
Q Consensus       439 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~  516 (540)
                      ||.|++||++++......      ...|...|++++|+|++. +|++|+.||.|++||+.+. ..++..+.. |...|++
T Consensus       268 dg~i~i~d~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~  340 (420)
T 3vl1_A          268 SGVITVHNVFSKEQTIQL------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP-ECPVGEFLINEGTPINN  340 (420)
T ss_dssp             TSCEEEEETTTCCEEEEE------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-TSCSEEEEESTTSCEEE
T ss_pred             CCeEEEEECCCCceeEEc------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC-cCchhhhhccCCCCceE
Confidence            999999999987754432      246788999999999999 9999999999999999974 345677776 6677888


Q ss_pred             EEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          517 AVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       517 l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +.| +++++|++++.||.|++|++
T Consensus       341 ~~~-~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          341 VYF-AAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             EEE-ETTEEEEEETTTEEEEEEEE
T ss_pred             EEe-CCCCEEEEecCCccEEEEec
Confidence            855 57889999999999999984

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-36  Score=300.42  Aligned_cols=283  Identities=18%  Similarity=0.235  Sum_probs=231.9

Q ss_pred             cccCc--eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          221 LHKRK--LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       221 ~h~~~--V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +|...  +.+++|++   ..+++++.||.|++||+.+++....+.       ..|...|.+++|+|++++|+++    +.
T Consensus        89 ~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~-------~~~~~~v~~v~~s~~~~~l~~~----~~  154 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAE-------TDESTYVASVKWSHDGSFLSVG----LG  154 (401)
T ss_dssp             TCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEE-------CCTTCCEEEEEECTTSSEEEEE----ET
T ss_pred             CCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeee-------cCCCCCEEEEEECCCCCEEEEE----CC
Confidence            45544  45566664   347778899999999999887654442       2478899999999999999999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      ||.|++||+.++   ..+..+..   |...|.+++|++   .+|++|+.||.|++||++....    ......+|...|.
T Consensus       155 dg~i~iwd~~~~---~~~~~~~~---~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~  221 (401)
T 4aez_A          155 NGLVDIYDVESQ---TKLRTMAG---HQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANH----QIGTLQGHSSEVC  221 (401)
T ss_dssp             TSCEEEEETTTC---CEEEEECC---CSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEE
T ss_pred             CCeEEEEECcCC---eEEEEecC---CCCceEEEEECC---CEEEEEcCCCCEEEEecccCcc----eeeEEcCCCCCee
Confidence            999999999876   44666654   678899999954   7999999999999999985442    2333356999999


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEc--CCCeEEEEECCCCcceee
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGT--PGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~v~i~d~~~~~~~~~  455 (540)
                      +++|+|++.+|++++.||.|++||++++..+... .+...+.++.|+|++.  .++++++  .|+.|++||+.++.....
T Consensus       222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--~ll~~~~gs~d~~i~i~d~~~~~~~~~  299 (401)
T 4aez_A          222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS--NLLATGGGTMDKQIHFWNAATGARVNT  299 (401)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--TEEEEECCTTTCEEEEEETTTCCEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--CEEEEecCCCCCEEEEEECCCCCEEEE
Confidence            9999999999999999999999999998887664 4567788999999764  3677765  899999999998765432


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEE--EeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITS--GSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      .        .+...|.+++|+|++++|++  |+.||.|++||+.+........+.+|...|.+++|+|+|++|++++.||
T Consensus       300 ~--------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          300 V--------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE  371 (401)
T ss_dssp             E--------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred             E--------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            2        24568999999999999998  5589999999999743334445778999999999999999999999999


Q ss_pred             cEEEEeC
Q 009203          534 NIGLHKI  540 (540)
Q Consensus       534 ~v~iw~l  540 (540)
                      .|++|++
T Consensus       372 ~i~iw~~  378 (401)
T 4aez_A          372 NLKFWRV  378 (401)
T ss_dssp             EEEEEEC
T ss_pred             cEEEEEC
Confidence            9999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.1e-36  Score=324.48  Aligned_cols=328  Identities=14%  Similarity=0.145  Sum_probs=267.1

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccc
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLH  222 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h  222 (540)
                      ...+.+|...|.+++++|..+                               .+++++.|+.|++|+..     ..+.+|
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~-------------------------------~la~~~~~g~v~iwd~~~~~~~~~~~~~   54 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEP-------------------------------WVLTTLYSGRVEIWNYETQVEVRSIQVT   54 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSS-------------------------------EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ceeeecCCCceEEEEECCCCC-------------------------------EEEEEeCCCEEEEEECCCCceEEEEecC
Confidence            456678999999999999854                               46777889999999754     457899


Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      .+.|++++|+|+ +.+|++|+.||.|+|||+.+++....+        .+|...|++++|+|++++|+++    +.||.|
T Consensus        55 ~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~----~~dg~i  121 (814)
T 3mkq_A           55 ETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDF--------EAHPDYIRSIAVHPTKPYVLSG----SDDLTV  121 (814)
T ss_dssp             SSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEE--------ECCSSCEEEEEECSSSSEEEEE----ETTSEE
T ss_pred             CCcEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEE--------ecCCCCEEEEEEeCCCCEEEEE----cCCCEE
Confidence            999999999996 999999999999999999998876666        4788999999999999999999    999999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      ++||+.++  ......+..   |...|.+++|+|.++..|++++.||.|++||+.++..    .......+...+.+++|
T Consensus       122 ~vw~~~~~--~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~----~~~~~~~~~~~v~~~~~  192 (814)
T 3mkq_A          122 KLWNWENN--WALEQTFEG---HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP----NFTLTTGQERGVNYVDY  192 (814)
T ss_dssp             EEEEGGGT--SEEEEEEEC---CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC----SEEEECCCTTCCCEEEE
T ss_pred             EEEECCCC--ceEEEEEcC---CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc----eeEEecCCCCCEEEEEE
Confidence            99999875  344555554   5678999999996778999999999999999988764    22222335588999999


Q ss_pred             cc--CCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          383 MQ--QKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       383 s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      +|  ++.+|++++.||.|++||+.+++.+.... +...+.++.|+|++   .++++++.||.|++||+.++....     
T Consensus       193 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~v~vwd~~~~~~~~-----  264 (814)
T 3mkq_A          193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL---PIIISGSEDGTLKIWNSSTYKVEK-----  264 (814)
T ss_dssp             CCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTCSEEE-----
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEECCCCcEEE-----
Confidence            99  99999999999999999999988776654 55778899999987   699999999999999999876433     


Q ss_pred             ccccCccccCeEEEEEcCCCC--EEEEEeCCCcEEEEeccCCC--------Cccc-------------------------
Q 009203          460 KQESSESQSALINQSWSPDGL--YITSGSADPVIHLFDIRYSA--------NKPS-------------------------  504 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~--~l~sg~~dg~i~iwd~~~~~--------~~~~-------------------------  504 (540)
                        .+..|...+.+++|+|+|.  +++++ .++.+.+|++....        +..+                         
T Consensus       265 --~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (814)
T 3mkq_A          265 --TLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ  341 (814)
T ss_dssp             --EECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred             --EeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence              3356778999999999987  45555 46668888876421        0000                         


Q ss_pred             --------ccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          505 --------QSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       505 --------~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                              ..+..+...+.+++|+|+|++|++++ ||.+.+|++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~  384 (814)
T 3mkq_A          342 DEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA  384 (814)
T ss_dssp             SSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred             CccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence                    01123444678999999999999888 899999974

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=299.28  Aligned_cols=300  Identities=18%  Similarity=0.193  Sum_probs=237.0

Q ss_pred             hhcccccCceEEEEEec-CCCcEEEEEeCCceEEEEEcCCCCCcceeeccc-----ccCCCCCCCCceeEEEec-CCCeE
Q 009203          217 HVSSLHKRKLRSLSLNP-VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTT-----DCLSPKHRRWPEDIAWHP-QGNSL  289 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~sp-d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~-----~~~~~~h~~~V~~~~~~~-~~~~l  289 (540)
                      .++.+|.+.|++++|+| + +.+|++|+.||.|++||+.++.....+....     .....+|...|.+++|+| ++.+|
T Consensus        37 ~~~~~h~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVE-GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EECCCCSSCEEEEEECTTT-CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeccCCcEEEEEEecCC-CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            45789999999999999 6 8999999999999999999887655543211     011136999999999999 77899


Q ss_pred             EEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC--CCCEEEEEecCCcEEEEecCCCCCccccce
Q 009203          290 FSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW--ENPCFATGGSDHAVVLWSERDAEDSWKPKA  367 (540)
Q Consensus       290 ~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  367 (540)
                      +++    +.|+.|++||+.++   .....+.    +...+.++.|+|.  ++.++++++.|+.|++||++++..   ...
T Consensus       116 ~s~----~~d~~i~iwd~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~  181 (408)
T 4a11_B          116 TSS----SFDKTLKVWDTNTL---QTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC---SHI  181 (408)
T ss_dssp             EEE----ETTSEEEEEETTTT---EEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC---CEE
T ss_pred             EEE----eCCCeEEEeeCCCC---ccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce---eee
Confidence            999    99999999999986   4455544    3466999999983  233899999999999999998875   222


Q ss_pred             eecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCe-eee----------------eccCccEEEEeecCCCCC
Q 009203          368 LHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRA-DFK----------------HQIESKCMSVLPNPCDFN  429 (540)
Q Consensus       368 ~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~  429 (540)
                      +  ..|...|.+++|+|++. +|++++.||.|++||++++.. +..                ..+...+.++.|+|++  
T Consensus       182 ~--~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--  257 (408)
T 4a11_B          182 L--QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG--  257 (408)
T ss_dssp             E--CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS--
T ss_pred             e--cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC--
Confidence            3  45899999999999998 588999999999999987652 111                2345778999999987  


Q ss_pred             ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203          430 LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       430 ~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  509 (540)
                       .+|++++.||.|++||+.++..........  .......+........+..+++++.|+.|++||+.+  +.++..+.+
T Consensus       258 -~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~  332 (408)
T 4a11_B          258 -LHLLTVGTDNRMRLWNSSNGENTLVNYGKV--CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS--GEQITMLKG  332 (408)
T ss_dssp             -SEEEEEETTSCEEEEETTTCCBCCCCCCCC--CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT--CCEEEEECC
T ss_pred             -CEEEEecCCCeEEEEECCCCccceeccccc--cccccccceeEEecCCCceEEEEecCCEEEEEECcC--Ccceeeecc
Confidence             699999999999999999877543322111  111111222222233456677778899999999998  788999999


Q ss_pred             cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          510 HQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       510 h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |.+.|++++|+|++++|++++.||.|++||+
T Consensus       333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~  363 (408)
T 4a11_B          333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVP  363 (408)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence            9999999999999999999999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=301.78  Aligned_cols=289  Identities=14%  Similarity=0.166  Sum_probs=233.8

Q ss_pred             ccccCceEEEEEecCCCc-EEEEEeCCceEEEEEc----CCCCC------cceeeccccc--CCCCCCCCceeEEEecCC
Q 009203          220 SLHKRKLRSLSLNPVNEQ-LFVTSALDGVIRLWQL----QSRGS------GASLLSTTDC--LSPKHRRWPEDIAWHPQG  286 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~----~~~~~------~~~~~~~~~~--~~~~h~~~V~~~~~~~~~  286 (540)
                      ..|.+.|++++|+|+ +. +||+|+.||.|++|++    .+++.      ...+......  ...+|...|++++|+|++
T Consensus        42 ~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            356699999999996 77 9999999999999999    77762      2233221110  012367899999999999


Q ss_pred             CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc
Q 009203          287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK  366 (540)
Q Consensus       287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (540)
                      ++|+++    +.|+.|++||.. +   ..+..+..   |...|.+++|+| ++.+|++++.|+.|++||+.+++..   .
T Consensus       121 ~~l~~~----~~dg~i~i~~~~-~---~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~---~  185 (425)
T 1r5m_A          121 NSIVTG----VENGELRLWNKT-G---ALLNVLNF---HRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVM---Q  185 (425)
T ss_dssp             SEEEEE----ETTSCEEEEETT-S---CEEEEECC---CCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEE---E
T ss_pred             CEEEEE----eCCCeEEEEeCC-C---CeeeeccC---CCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEE---E
Confidence            999999    999999999943 3   44555554   678899999999 9999999999999999999987642   2


Q ss_pred             eeecccCCcc---------------eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCc
Q 009203          367 ALHRNLHSSA---------------VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       367 ~~~~~~~~~~---------------v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  430 (540)
                      .+  ..+...               +.+++|+++ ..+++++.+|.|++||+++++.+... .+...+.++.|+|++   
T Consensus       186 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---  259 (425)
T 1r5m_A          186 HF--ELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN---  259 (425)
T ss_dssp             EE--CCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT---
T ss_pred             Ee--eccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC---
Confidence            22  224444               999999987 45888999999999999998876554 456778899999987   


Q ss_pred             eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      .+|++++.|+.|++||+.+.....       .+.+|...|.+++|+|++ +|++++.||.|++||+.+  +..+..+..|
T Consensus       260 ~~l~~~~~d~~i~i~d~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~~~~~~~~~  329 (425)
T 1r5m_A          260 KLLLSASDDGTLRIWHGGNGNSQN-------CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ--NTLLALSIVD  329 (425)
T ss_dssp             TEEEEEETTSCEEEECSSSBSCSE-------EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT--TEEEEEEECT
T ss_pred             CEEEEEcCCCEEEEEECCCCccce-------EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC--CcEeEecccC
Confidence            689999999999999999766433       345688899999999999 999999999999999987  7788888899


Q ss_pred             ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          511 QKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       511 ~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ...|.+++|+|++++|++++.||.|++||+
T Consensus       330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred             CccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            999999999999999999999999999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.9e-37  Score=305.11  Aligned_cols=293  Identities=14%  Similarity=0.121  Sum_probs=223.6

Q ss_pred             CeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhc
Q 009203          147 SSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVS  219 (540)
Q Consensus       147 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~  219 (540)
                      ......+|...|++++++|..+                              ..+++++.|++|++|+..       ..+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~------------------------------~~lasGs~dg~i~lWd~~~~~~~~~~~~  160 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHP------------------------------STVAVGSKGGDIMLWNFGIKDKPTFIKG  160 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCT------------------------------TCEEEEETTSCEEEECSSCCSCCEEECC
T ss_pred             ecccCCCCCCCEEEEEEeCCCC------------------------------CEEEEEeCCCEEEEEECCCCCceeEEEc
Confidence            3445668889999999999743                              358899999999999764       235


Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      .+|.+.|++|+|+|.++.+|++|+.||+|+|||+..... ..+...     ..+...+.+++|+|++.+|++|    +.|
T Consensus       161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~l~~g----~~d  230 (435)
T 4e54_B          161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASS-----DTINIWFCSLDVSASSRMVVTG----DNV  230 (435)
T ss_dssp             CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-EEEECC-----SSCSCCCCCEEEETTTTEEEEE----CSS
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEecc-----CCCCccEEEEEECCCCCEEEEE----eCC
Confidence            799999999999996689999999999999999976432 222111     2455678899999999999999    999


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      |.|++||+...    .+..+.+   |...|.+++|+|....+|++|+.|+.|++||+++........  ...+|...|++
T Consensus       231 g~i~~wd~~~~----~~~~~~~---h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~--~~~~h~~~v~~  301 (435)
T 4e54_B          231 GNVILLNMDGK----ELWNLRM---HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL--YSLPHRHPVNA  301 (435)
T ss_dssp             SBEEEEESSSC----BCCCSBC---CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS--BCCBCSSCEEE
T ss_pred             CcEeeeccCcc----eeEEEec---ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE--Eeeeccccccc
Confidence            99999999742    2334443   678899999999445588899999999999999876532222  22469999999


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------CccEEEEeecCCCCCceEEEEE------------cCCC
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-------ESKCMSVLPNPCDFNLFMVQTG------------TPGR  440 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~------------~~dg  440 (540)
                      ++|+|+|.+|++++.||.|++||+.++........       ........|+|.+   .+++++            ..++
T Consensus       302 ~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~  378 (435)
T 4e54_B          302 ACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY---NLIVVGRYPDPNFKSCTPYELR  378 (435)
T ss_dssp             CCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS---SCEEEECCCCTTSCCSSTTCCC
T ss_pred             eeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC---CEEEEEEcCCCCeEEEEecCCC
Confidence            99999999999999999999999998776443211       1122334455543   233333            3456


Q ss_pred             eEEEEECCCCcceeeeeccccccCccccCeEEE-EEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQ-SWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .|++||..++......      ..+|...|.++ +|+|+|.+|++|+ |+.|+||++..
T Consensus       379 ~i~iwd~~~g~~~~~l------~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~  430 (435)
T 4e54_B          379 TIDVFDGNSGKMMCQL------YDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE  430 (435)
T ss_dssp             CEEEECSSSCCEEEEE------CCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred             EEEEEECCCCcEEEEE------eCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence            8999999988754432      24677888887 6999999999886 78999999987

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-36  Score=291.43  Aligned_cols=286  Identities=12%  Similarity=0.157  Sum_probs=236.0

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      |.++|.+++|+|| |++++++..++.+.+|...........        .+|...|.+++|+|++++|+++    + |+.
T Consensus         8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~~~----~-dg~   73 (337)
T 1gxr_A            8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRHARQINT--------LNHGEVVCAVTISNPTRHVYTG----G-KGC   73 (337)
T ss_dssp             EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSEEEEEEE--------ECCSSCCCEEEECSSSSEEEEE----C-BSE
T ss_pred             cCCceeEEEECCC-CCEEEeecCCCcEeccccCCcccccee--------ccCCCceEEEEEecCCcEEEEc----C-CCe
Confidence            5578999999996 899988887777766654432221111        3789999999999999999998    7 999


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      |++||+.++.....+..+... .|...|.+++|+| ++++|++++.||.|++||+.+++.   ........|...|.+++
T Consensus        74 i~iw~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~i~~~~  148 (337)
T 1gxr_A           74 VKVWDISHPGNKSPVSQLDCL-NRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTP---RIKAELTSSAPACYALA  148 (337)
T ss_dssp             EEEEETTSTTCCSCSEEEECS-CTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC-----EEEEEEECSSSCEEEEE
T ss_pred             EEEEECCCCCceeeeeccccc-CCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCc---ceeeecccCCCceEEEE
Confidence            999999876544444444322 2567899999999 999999999999999999998763   12233355889999999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      |+|+++++++++.||.|++||+++++.+.... +...+.++.|+|++   .++++++.||.|++||+++++.....    
T Consensus       149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~----  221 (337)
T 1gxr_A          149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG---TKLWTGGLDNTVRSWDLREGRQLQQH----  221 (337)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC---CEEEEEecCCcEEEEECCCCceEeee----
Confidence            99999999999999999999999988776654 46778999999987   68999999999999999987643321    


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                          .+...+.+++|+|++++|++++.||.|++||+..  .. ...+..|...|.+++|+|++++|++++.||.|++||+
T Consensus       222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~  294 (337)
T 1gxr_A          222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK--PD-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--SC-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CC-eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence                3567899999999999999999999999999996  33 4467789999999999999999999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.8e-36  Score=327.29  Aligned_cols=288  Identities=18%  Similarity=0.205  Sum_probs=245.2

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +.+.+|.+.|++++|+|| +.+||+|+.||.|+|||+.+++....+        .+|...|.+++|+|++++|+++    
T Consensus         7 ~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~----   73 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYETQVEVRSI--------QVTETPVRAGKFIARKNWIIVG----   73 (814)
T ss_dssp             EEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECCSSCEEEEEEEGGGTEEEEE----
T ss_pred             eeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCCCceEEEE--------ecCCCcEEEEEEeCCCCEEEEE----
Confidence            456899999999999996 999999999999999999988766665        4788999999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.||.|++||+.++   ..+..+..   |.+.|.+++|+| ++.+|++++.||.|++||+.++..    ......+|...
T Consensus        74 ~~dg~i~vw~~~~~---~~~~~~~~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~  142 (814)
T 3mkq_A           74 SDDFRIRVFNYNTG---EKVVDFEA---HPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWA----LEQTFEGHEHF  142 (814)
T ss_dssp             ETTSEEEEEETTTC---CEEEEEEC---CSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSE----EEEEEECCSSC
T ss_pred             eCCCeEEEEECCCC---cEEEEEec---CCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCce----EEEEEcCCCCc
Confidence            89999999999986   44555554   678899999999 999999999999999999987632    22233568999


Q ss_pred             eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeecc--CccEEEEeecC--CCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQI--ESKCMSVLPNP--CDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      |.+++|+| ++..|++++.||.|++||+.++........  ...+..+.|+|  ++   .++++++.||.|++||+.++.
T Consensus       143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~  219 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK---PYMITASDDLTIKIWDYQTKS  219 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC---CEEEEECTTSEEEEEETTTTE
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC---CEEEEEeCCCEEEEEECCCCc
Confidence            99999999 889999999999999999988776554332  36677888887  55   699999999999999998876


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCE-EEEEE
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPL-LISIS  530 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~-l~s~~  530 (540)
                      ...       .+.+|...|++++|+|+|.+|++++.||.|++||+.+  +..+..+..|...|++++|+|++.. +++++
T Consensus       220 ~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  290 (814)
T 3mkq_A          220 CVA-------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST--YKVEKTLNVGLERSWCIATHPTGRKNYIASG  290 (814)
T ss_dssp             EEE-------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--CSEEEEECCSSSSEEEEEECTTCGGGEEEEE
T ss_pred             EEE-------EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcEEEEeecCCCcEEEEEEccCCCceEEEEE
Confidence            433       3456888999999999999999999999999999997  7888888889999999999999973 34555


Q ss_pred             cCCcEEEEeC
Q 009203          531 SDLNIGLHKI  540 (540)
Q Consensus       531 ~dg~v~iw~l  540 (540)
                      .|+.+.+|++
T Consensus       291 ~~~~~~~~~~  300 (814)
T 3mkq_A          291 FDNGFTVLSL  300 (814)
T ss_dssp             ETTEEEEEEC
T ss_pred             eCCCEEEEEc
Confidence            5777888864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=286.87  Aligned_cols=290  Identities=14%  Similarity=0.182  Sum_probs=243.2

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccccc
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHK  223 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~  223 (540)
                      ..+.+|...|.++++.|...                               .+++++.|+.|++|+..     ..+.+|.
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~-------------------------------~l~~~~~dg~i~vwd~~~~~~~~~~~~h~   74 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGD-------------------------------LLFSCSKDSSASVWYSLNGERLGTLDGHT   74 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSC-------------------------------EEEEEESSSCEEEEETTTCCEEEEECCCS
T ss_pred             EEEEEeeceEEEEEEcCCCC-------------------------------EEEEEeCCCEEEEEeCCCchhhhhhhhcC
Confidence            45679999999999998742                               46777889999999754     4578999


Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC----
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD----  299 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d----  299 (540)
                      +.|++++|+|+ +.+|++++.||.|++||+.+++....+         .|...|.+++|+|++++|+++    +.+    
T Consensus        75 ~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~----~~~~~~~  140 (369)
T 3zwl_B           75 GTIWSIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATW---------KSPVPVKRVEFSPCGNYFLAI----LDNVMKN  140 (369)
T ss_dssp             SCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEE---------ECSSCEEEEEECTTSSEEEEE----ECCBTTB
T ss_pred             CcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEe---------ecCCCeEEEEEccCCCEEEEe----cCCccCC
Confidence            99999999995 899999999999999999988766655         256779999999999999998    777    


Q ss_pred             -CeEEEEecCCCCCceeEEeecCCC-----Cccc--ceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc
Q 009203          300 -SQISVLNLNKTKGRACVTFLDDKP-----HVKG--IINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN  371 (540)
Q Consensus       300 -~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  371 (540)
                       +.|.+||+........+.......     .+.+  .+.+++|+| ++.+|++++.||.|++||+++...    ......
T Consensus       141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~  215 (369)
T 3zwl_B          141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYE----YVDSID  215 (369)
T ss_dssp             CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTE----EEEEEE
T ss_pred             CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcE----eEEEEe
Confidence             999999998764322222211100     1223  799999999 999999999999999999998321    222234


Q ss_pred             cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC-----------
Q 009203          372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR-----------  440 (540)
Q Consensus       372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----------  440 (540)
                      .|...|.+++|+|++.+|++++.||.|++||+++++.+........+..+.++|++   .++++++.++           
T Consensus       216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~  292 (369)
T 3zwl_B          216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLK---EFIILGGGQEAKDVTTTSANE  292 (369)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSS---SEEEEEECCC-----------
T ss_pred             cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCC---ceEEEeecCCCceEEEEecCC
Confidence            58899999999999999999999999999999999998888888899999999988   6888888888           


Q ss_pred             ---eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          441 ---QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       441 ---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                         .+++||+.++....       .+.+|...|++++|+|+|++|++++.||.|++|++..
T Consensus       293 ~~~~i~~~d~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          293 GKFEARFYHKIFEEEIG-------RVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             --CEEEEEETTTCCEEE-------EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             CcceeEEEecCCCcchh-------heecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence               89999999877543       3457889999999999999999999999999999986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.5e-37  Score=292.50  Aligned_cols=273  Identities=17%  Similarity=0.208  Sum_probs=203.2

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC--cceeecccccCCCCCCCCceeEEEec--CCCeEEEE
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS--GASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSA  292 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~  292 (540)
                      .++.+|.+.|++++|+|+ +++||+|+.|++|+|||+.++..  ...+        .+|...|.+++|++  ++++|+++
T Consensus         7 ~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l--------~gH~~~V~~v~~~~~~~~~~l~s~   77 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADL--------RGHEGPVWQVAWAHPMYGNILASC   77 (316)
T ss_dssp             -------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEE--------ECCSSCEEEEEECCGGGSSCEEEE
T ss_pred             eecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEE--------cCCCccEEEEEeCCCCCCCEEEEE
Confidence            346799999999999996 99999999999999999987642  2222        58999999999986  48999999


Q ss_pred             eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203          293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                          +.|++|++||+.++.. .....+.+   |...|.+++|+| +  +.+|++|+.|++|++||++.+... . .....
T Consensus        78 ----s~D~~v~iWd~~~~~~-~~~~~~~~---h~~~V~~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~-~-~~~~~  146 (316)
T 3bg1_A           78 ----SYDRKVIIWREENGTW-EKSHEHAG---HDSSVNSVCWAP-HDYGLILACGSSDGAISLLTYTGEGQW-E-VKKIN  146 (316)
T ss_dssp             ----ETTSCEEEECCSSSCC-CEEEEECC---CSSCCCEEEECC-TTTCSCEEEECSSSCEEEEEECSSSCE-E-ECCBT
T ss_pred             ----ECCCEEEEEECCCCcc-eEEEEccC---CCCceEEEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCc-c-eeeee
Confidence                9999999999987532 23444443   678899999999 5  789999999999999999876320 0 01223


Q ss_pred             ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      .+|...|.+++|+|++..       +.+  .+...+.                .+.  .+.+|++|+.|+.|++||++..
T Consensus       147 ~~h~~~v~~~~~~~~~~~-------~~~--~~~~~~~----------------~~~--~~~~l~sgs~D~~v~lWd~~~~  199 (316)
T 3bg1_A          147 NAHTIGCNAVSWAPAVVP-------GSL--IDHPSGQ----------------KPN--YIKRFASGGCDNLIKLWKEEED  199 (316)
T ss_dssp             TSSSSCBCCCEECCCCCC---------------CCSC----------------CCC--CCCBEECCBTTSBCCEEEECTT
T ss_pred             ccccCCcceEEEccccCC-------ccc--ccccccc----------------Ccc--ccceEEEecCCCeEEEEEeCCC
Confidence            568899999999997431       000  0100010                011  1148999999999999999754


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCCC----CEEEEEeCCCcEEEEeccCCC--CcccccccccccceeEEEEcCCCC
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPDG----LYITSGSADPVIHLFDIRYSA--NKPSQSIRAHQKRVFKAVWHYSHP  524 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g----~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~i~~l~~s~~~~  524 (540)
                      .....    ...+.+|...|.+++|+|++    .+|++|+.||.|+||++....  ......+..|...|++++|+|+++
T Consensus       200 ~~~~~----~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~  275 (316)
T 3bg1_A          200 GQWKE----EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN  275 (316)
T ss_dssp             SCEEE----EECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC
T ss_pred             Cccce----eeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC
Confidence            32111    12567899999999999987    889999999999999998621  112344567889999999999999


Q ss_pred             EEEEEEcCCcEEEEeC
Q 009203          525 LLISISSDLNIGLHKI  540 (540)
Q Consensus       525 ~l~s~~~dg~v~iw~l  540 (540)
                      +|++++.||+|+||++
T Consensus       276 ~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          276 ILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             CEEEEESSSCEEEEEE
T ss_pred             EEEEEcCCCeEEEEEE
Confidence            9999999999999983

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.2e-35  Score=293.33  Aligned_cols=284  Identities=17%  Similarity=0.254  Sum_probs=221.4

Q ss_pred             EEecCCCCeEEEeccc-----hh--cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HV--SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~--~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      ++.+ .|++|++|+..     ++  +.+|.+.|++|+|+|| |.+||+|+.||+|+|||+.+++.+..+        .+|
T Consensus       119 lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~~~~--------~~h  188 (420)
T 4gga_A          119 LAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNM--------TSH  188 (420)
T ss_dssp             EEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------CCC
T ss_pred             EEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEEEEE--------eCC
Confidence            4444 38999999764     22  4578889999999996 999999999999999999998776665        588


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      ...|.+++|+  +.+|+++    +.|+.+++||....  ...+..+.+   |...+..+.|+| ++.++++++.|+.|++
T Consensus       189 ~~~v~~~s~~--~~~l~sg----s~d~~i~~~d~~~~--~~~~~~~~~---h~~~~~~~~~~~-~g~~l~s~~~D~~v~i  256 (420)
T 4gga_A          189 SARVGSLSWN--SYILSSG----SRSGHIHHHDVRVA--EHHVATLSG---HSQEVCGLRWAP-DGRHLASGGNDNLVNV  256 (420)
T ss_dssp             SSCEEEEEEE--TTEEEEE----ETTSEEEEEETTSS--SCEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             CCceEEEeeC--CCEEEEE----eCCCceeEeeeccc--ceeeEEecc---cccceeeeeecC-CCCeeeeeeccccceE
Confidence            8999888775  6799999    99999999999875  344555554   677899999999 9999999999999999


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCC-EEEE--EeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-IVLS--AGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (540)
                      ||..+++..... ......|...|.+++|+|++. ++++  |+.|++|++||+.++.+.........+.++.|+|.+.  
T Consensus       257 ~~~~~~~~~~~~-~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~--  333 (420)
T 4gga_A          257 WPSAPGEGGWVP-LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK--  333 (420)
T ss_dssp             EESSCCSSCSCC-SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTT--
T ss_pred             Eeecccccccee-eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCC--
Confidence            999987643222 122356889999999999654 5554  3579999999999999988888888999999999873  


Q ss_pred             eEEEE--EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203          431 FMVQT--GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR  508 (540)
Q Consensus       431 ~~l~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  508 (540)
                       .+++  |+.|+.|++||+.+++...       .+.+|...|++++|+|||++|++|+.||+|+|||+..  ..+.....
T Consensus       334 -~lv~~sg~~d~~I~iwd~~~~~~v~-------~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~--~~~~~~~~  403 (420)
T 4gga_A          334 -ELISGHGFAQNQLVIWKYPTMAKVA-------ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE--LDPARRRE  403 (420)
T ss_dssp             -EEEEEECTTTCCEEEEETTTCCEEE-------EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC--SSCC----
T ss_pred             -eEEEEEecCCCEEEEEECCCCcEEE-------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC--CCccchhh
Confidence             4444  4589999999999887543       4578999999999999999999999999999999986  44555555


Q ss_pred             ccccceeEEEE
Q 009203          509 AHQKRVFKAVW  519 (540)
Q Consensus       509 ~h~~~i~~l~~  519 (540)
                      .+...+....+
T Consensus       404 ~~~~~~~~~s~  414 (420)
T 4gga_A          404 REKASAAKSSL  414 (420)
T ss_dssp             -----------
T ss_pred             hccCCcccccc
Confidence            45444433333

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=303.98  Aligned_cols=290  Identities=12%  Similarity=0.210  Sum_probs=219.3

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC-------cceeecccccCCCCCC------------CCceeEE
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS-------GASLLSTTDCLSPKHR------------RWPEDIA  281 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~-------~~~~~~~~~~~~~~h~------------~~V~~~~  281 (540)
                      .|.+.|++|+|+|+ +.+||+|+.||.|+||++.++..       ...+....    .+|.            ..|.+++
T Consensus        26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~----~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF----QSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE----ECCCCEEEGGGTEEECCCCCEEE
T ss_pred             cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc----ccccccccccccccccCceEEEE
Confidence            47899999999995 99999999999999999987652       01111111    4787            8899999


Q ss_pred             EecCC--CeEEEEeecCCCCCeEEEEecCCCCCc------------------------------------eeEEeecCCC
Q 009203          282 WHPQG--NSLFSAHTADSGDSQISVLNLNKTKGR------------------------------------ACVTFLDDKP  323 (540)
Q Consensus       282 ~~~~~--~~l~s~~~~~~~d~~i~vwd~~~~~~~------------------------------------~~~~~~~~~~  323 (540)
                      |+|++  .+|+++    +.|+.|++||+.++...                                    .....+  ..
T Consensus       101 ~~~~~~~~~l~s~----s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  174 (447)
T 3dw8_B          101 WLPQKNAAQFLLS----TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF--AN  174 (447)
T ss_dssp             ECCCCSSSEEEEE----ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE--CS
T ss_pred             EcCCCCcceEEEe----CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe--cc
Confidence            99998  789999    99999999999763110                                    000111  12


Q ss_pred             CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee-----ecccCCcceeEEEeccCC-CEEEEEeCCCe
Q 009203          324 HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL-----HRNLHSSAVMGVAGMQQK-QIVLSAGADKR  397 (540)
Q Consensus       324 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~  397 (540)
                      .|...|.+++|+| ++.+|++| .|+.|++||++.....  ...+     ...+|...|++++|+|++ .+|++++.||.
T Consensus       175 ~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  250 (447)
T 3dw8_B          175 AHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRS--FNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT  250 (447)
T ss_dssp             CCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEE--EEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred             CCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCce--eeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence            4678899999999 99999998 7999999999843311  1111     235699999999999998 99999999999


Q ss_pred             EEEEECCCCCe----eeeeccCc-------------cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          398 IIGFDAGVGRA----DFKHQIES-------------KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       398 i~iwd~~~~~~----~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      |++||++++..    ........             .+.++.|+|++   .+|++++. +.|++||+++.......    
T Consensus       251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~-~~v~iwd~~~~~~~~~~----  322 (447)
T 3dw8_B          251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG---RYMMTRDY-LSVKVWDLNMENRPVET----  322 (447)
T ss_dssp             EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS---SEEEEEES-SEEEEEETTCCSSCSCC----
T ss_pred             EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC---CEEEEeeC-CeEEEEeCCCCccccce----
Confidence            99999998875    34433332             78999999987   68999988 99999999873322322    


Q ss_pred             cccCcccc---------------CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-----------------
Q 009203          461 QESSESQS---------------ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-----------------  508 (540)
Q Consensus       461 ~~~~~~~~---------------~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-----------------  508 (540)
                        +.+|..               .+..++|+|+|++|++|+.||.|++||+.++  +.+ .+.                 
T Consensus       323 --~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~--~~~-~~~~~~~~~~~~~~~~~~~~  397 (447)
T 3dw8_B          323 --YQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK--RDI-TLEASRENNKPRTVLKPRKV  397 (447)
T ss_dssp             --EESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC--CEE-EEECCSTTCCTTCBCCCCCE
T ss_pred             --eeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC--cce-eeeecccccccccccCCccc
Confidence              223332               1345999999999999999999999999873  222 111                 


Q ss_pred             ----------------ccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          509 ----------------AHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       509 ----------------~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                                      .+...|..++|+|++.+|++++.|+ +++|.
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          398 CASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             ECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             cccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence                            2345789999999999999998776 66664

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=9.6e-36  Score=287.48  Aligned_cols=285  Identities=11%  Similarity=0.154  Sum_probs=230.1

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~  296 (540)
                      +..+|.+.|++++|+|+ +.+|++|+.||.|+||++..+.........     .+|...|.+++|+|+++ +|+++    
T Consensus         6 ~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~----   75 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-----LRYKHPLLCCNFIDNTDLQIYVG----   75 (342)
T ss_dssp             CSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEE-----EECSSCEEEEEEEESSSEEEEEE----
T ss_pred             cccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceee-----eecCCceEEEEECCCCCcEEEEE----
Confidence            34689999999999995 899999999999999999877622112111     37889999999999999 99999    


Q ss_pred             CCCCeEEEEec-CCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC---------CCCccccc
Q 009203          297 SGDSQISVLNL-NKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD---------AEDSWKPK  366 (540)
Q Consensus       297 ~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~  366 (540)
                      +.|+.|++||+ .++.    ...+... .|...|.+++|+|  +.+|++++.|+.|++||+++         ++..   .
T Consensus        76 ~~dg~i~~wd~~~~~~----~~~~~~~-~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~  145 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPS----FQALTNN-EANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS---N  145 (342)
T ss_dssp             ETTSCEEEECSSSSSS----EEECBSC-CCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS---S
T ss_pred             cCCCeEEEEEeccCCc----eEecccc-CCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee---e
Confidence            99999999999 7652    2333321 1567899999998  78999999999999999987         5532   1


Q ss_pred             eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCee---eeeccCccEEEEeecC-CCCCceEEEEEcCCCe
Q 009203          367 ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRAD---FKHQIESKCMSVLPNP-CDFNLFMVQTGTPGRQ  441 (540)
Q Consensus       367 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~---~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~  441 (540)
                      .+   .|...|.+++|+|++  +++++.|+.|++||+++ +...   ........+.++.|+| ++   .++++++.||.
T Consensus       146 ~~---~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~---~~l~~~~~dg~  217 (342)
T 1yfq_A          146 NT---KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ---EGYACSSIDGR  217 (342)
T ss_dssp             SS---SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG---CEEEEEETTSE
T ss_pred             EE---eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC---CEEEEEecCCc
Confidence            11   278899999999877  99999999999999998 5542   3344567889999999 76   69999999999


Q ss_pred             EEEEECCCC-----cceeeeecccc---ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-cc
Q 009203          442 LRLYDIRLR-----QTEIHAFGWKQ---ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QK  512 (540)
Q Consensus       442 v~i~d~~~~-----~~~~~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~  512 (540)
                      |++||++..     ......+....   ...+|...|++++|+|++++|++|+.||.|++||+.+  ++.+..+.+| ..
T Consensus       218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~h~~  295 (342)
T 1yfq_A          218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT--RKKIKNFAKFNED  295 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT--TEEEEECCCCSSS
T ss_pred             EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc--HhHhhhhhcccCC
Confidence            999999876     12222221000   0113455999999999999999999999999999998  7788889998 99


Q ss_pred             ceeEEEEcCCCCEEEEEEcCCc
Q 009203          513 RVFKAVWHYSHPLLISISSDLN  534 (540)
Q Consensus       513 ~i~~l~~s~~~~~l~s~~~dg~  534 (540)
                      .|++++  |++++|++++.||.
T Consensus       296 ~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          296 SVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             EEEEEE--ECSSEEEEEEECTH
T ss_pred             CceEec--CCCCeEEEEecCCc
Confidence            999999  99999999999998

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.4e-36  Score=290.66  Aligned_cols=292  Identities=14%  Similarity=0.251  Sum_probs=226.0

Q ss_pred             hhcccccCceEEEEEecCC--CcEEEEEeCCceEEEEEcCC-CCCc-ceeecccccCCCCCCCCceeEEEecCCCeEEEE
Q 009203          217 HVSSLHKRKLRSLSLNPVN--EQLFVTSALDGVIRLWQLQS-RGSG-ASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSA  292 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~--~~~l~tg~~dg~v~iw~~~~-~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~  292 (540)
                      .++.+|.+.|++++|+|++  |.+|++|+.||.|+|||+.+ +... ..+        .+|...|.+++|+|++++|+++
T Consensus        33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ--------QMHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE--------EECSSCEEEEEECTTSSEEEEE
T ss_pred             EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe--------ccccCCEEEEEECcCCCEEEEE
Confidence            3568999999999999964  69999999999999999987 3322 222        4788999999999999999999


Q ss_pred             eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE--eCCCCCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203          293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF--LPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                          +.|+.|++||+.++   .......    |...|.+++|  +| ++.+|++++.||.|++||+++++.   ...+. 
T Consensus       105 ----~~dg~v~iwd~~~~---~~~~~~~----~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~-  168 (368)
T 3mmy_A          105 ----SCDKTAKMWDLSSN---QAIQIAQ----HDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNP---MMVLQ-  168 (368)
T ss_dssp             ----ETTSEEEEEETTTT---EEEEEEE----CSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSC---SEEEE-
T ss_pred             ----cCCCcEEEEEcCCC---Cceeecc----ccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcE---EEEEe-
Confidence                99999999999976   3344332    5788999999  88 889999999999999999998875   22222 


Q ss_pred             ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-----eccCccEEEEeecCCCCCceEEEEEcCCCeEEEE
Q 009203          371 NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-----HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLY  445 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~  445 (540)
                        ....+.++.+.  +..+++++.++.+++||++.......     ......+..+.+.+.. ....+++++.||.|++|
T Consensus       169 --~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          169 --LPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-KPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             --CSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-CEEEEEEEETTSEEEEE
T ss_pred             --cCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-CCCeEEEecCCCcEEEE
Confidence              23456677666  46888999999999999987654332     1122334444444332 11359999999999999


Q ss_pred             ECCCCcc--eeeee-ccc-----cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEE
Q 009203          446 DIRLRQT--EIHAF-GWK-----QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKA  517 (540)
Q Consensus       446 d~~~~~~--~~~~~-~~~-----~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l  517 (540)
                      |++....  ....+ .+.     ....+|...|++++|+|++++|++|+.||.|++||+.+  +.++..+.+|...|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~  321 (368)
T 3mmy_A          244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA--RTKLKTSEQLDQPISAC  321 (368)
T ss_dssp             ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT--TEEEEECCCCSSCEEEE
T ss_pred             ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC--CcEEEEecCCCCCceEE
Confidence            9987642  11111 000     01122333799999999999999999999999999997  78888999999999999


Q ss_pred             EEcCCCCEEEEEEcCCcEEEEe
Q 009203          518 VWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       518 ~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      +|+|+|++|++++.|+..+.|+
T Consensus       322 ~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          322 CFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             EECTTSSCEEEEECCCSTTCGG
T ss_pred             EECCCCCeEEEEeccccccccc
Confidence            9999999999999998655443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.6e-35  Score=294.31  Aligned_cols=275  Identities=18%  Similarity=0.196  Sum_probs=231.5

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      .+|...|+|++|  | +.+|++|+.||.|++||+.+++....+        .+|...|.+++|  ++++|++|    +.|
T Consensus       130 ~~~~~~v~~~~~--d-~~~l~~g~~dg~i~iwd~~~~~~~~~~--------~~h~~~v~~l~~--~~~~l~sg----~~d  192 (435)
T 1p22_A          130 SETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNTLECKRIL--------TGHTGSVLCLQY--DERVIITG----SSD  192 (435)
T ss_dssp             CSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSSCCEEEEE--------CCCSSCEEEEEC--CSSEEEEE----ETT
T ss_pred             cCCCCcEEEEEE--C-CCEEEEEeCCCeEEEEeCCCCeEEEEE--------cCCCCcEEEEEE--CCCEEEEE----cCC
Confidence            467788999988  3 789999999999999999988776665        589999999999  78899999    999


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      |.|++||+.++   ..+..+..   |...|.+++|++   ..+++|+.||.|++||+.++......  ....+|...|.+
T Consensus       193 g~i~vwd~~~~---~~~~~~~~---h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~~v~~  261 (435)
T 1p22_A          193 STVRVWDVNTG---EMLNTLIH---HCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLR--RVLVGHRAAVNV  261 (435)
T ss_dssp             SCEEEEESSSC---CEEEEECC---CCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEE--EEECCCSSCEEE
T ss_pred             CeEEEEECCCC---cEEEEEcC---CCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceee--eEecCCCCcEEE
Confidence            99999999987   45666664   677899999965   59999999999999999987642111  223569999999


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG  458 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  458 (540)
                      ++|  +++++++++.||.|++||+++++.+.... +...+.++.+++     .++++|+.||.|++||++++....    
T Consensus       262 ~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~g~~dg~i~iwd~~~~~~~~----  330 (435)
T 1p22_A          262 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-----RLVVSGSSDNTIRLWDIECGACLR----  330 (435)
T ss_dssp             EEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-----TEEEEEETTSCEEEEETTTCCEEE----
T ss_pred             EEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC-----CEEEEEeCCCeEEEEECCCCCEEE----
Confidence            999  68999999999999999999998876654 456777888854     489999999999999999876543    


Q ss_pred             cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCC-------cccccccccccceeEEEEcCCCCEEEEEEc
Q 009203          459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSAN-------KPSQSIRAHQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~-------~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                         .+.+|...|.+++|  ++.+|++|+.||.|++||+.....       .++..+.+|.+.|++++|  ++.+|++++.
T Consensus       331 ---~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~  403 (435)
T 1p22_A          331 ---VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH  403 (435)
T ss_dssp             ---EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS
T ss_pred             ---EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC
Confidence               44678899999999  788999999999999999976211       156778899999999999  7889999999


Q ss_pred             CCcEEEEeC
Q 009203          532 DLNIGLHKI  540 (540)
Q Consensus       532 dg~v~iw~l  540 (540)
                      ||+|++||+
T Consensus       404 Dg~i~iwd~  412 (435)
T 1p22_A          404 DDTILIWDF  412 (435)
T ss_dssp             SSEEEEEC-
T ss_pred             CCEEEEEEC
Confidence            999999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-34  Score=286.02  Aligned_cols=264  Identities=16%  Similarity=0.269  Sum_probs=221.1

Q ss_pred             EEecCCCCeEEEeccc-----hhc-ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVS-SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~-~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      +.+++.|+.|++|+..     .++ ..|.+.|++++|+|+ +.+|++|+.||.|++||+.+++....+        .+|.
T Consensus       106 l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~  176 (401)
T 4aez_A          106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDVESQTKLRTM--------AGHQ  176 (401)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEE--------CCCS
T ss_pred             EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEECcCCeEEEEe--------cCCC
Confidence            4456679999999764     223 348999999999995 999999999999999999988766665        5889


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      ..|.+++|+  +++|+++    +.|+.|++||+...  ......+..   |.+.|.+++|+| ++.+|++|+.|+.|++|
T Consensus       177 ~~v~~~~~~--~~~l~~~----~~dg~i~i~d~~~~--~~~~~~~~~---~~~~v~~~~~~~-~~~~l~s~~~d~~v~iw  244 (401)
T 4aez_A          177 ARVGCLSWN--RHVLSSG----SRSGAIHHHDVRIA--NHQIGTLQG---HSSEVCGLAWRS-DGLQLASGGNDNVVQIW  244 (401)
T ss_dssp             SCEEEEEEE--TTEEEEE----ETTSEEEEEETTSS--SCEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred             CceEEEEEC--CCEEEEE----cCCCCEEEEecccC--cceeeEEcC---CCCCeeEEEEcC-CCCEEEEEeCCCeEEEc
Confidence            999999994  5799999    99999999999854  244555554   678899999999 99999999999999999


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCC-EEEEEe--CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ-IVLSAG--ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (540)
                      |++++..     ......|...|.+++|+|++. ++++++  .|+.|++||+++++.+........+.++.|+|++   .
T Consensus       245 d~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~---~  316 (401)
T 4aez_A          245 DARSSIP-----KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHS---K  316 (401)
T ss_dssp             ETTCSSE-----EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSS---S
T ss_pred             cCCCCCc-----cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCC---C
Confidence            9998764     222346899999999999765 555554  6999999999999998888888899999999987   5


Q ss_pred             EEEE--EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          432 MVQT--GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       432 ~l~~--~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ++++  |+.||.|++||+.++......     .+.+|...|.+++|+|+|.+|++++.||.|++|++.+
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~-----~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQV-----DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEE-----EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEE-----EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            6777  568999999999876533221     3467889999999999999999999999999999997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.6e-35  Score=285.22  Aligned_cols=290  Identities=15%  Similarity=0.112  Sum_probs=227.2

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhc--c
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVS--S  220 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~--~  220 (540)
                      ...+.+|...|.++.+.|..+                              ..+++++.|++|++|+..     ..+  .
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~------------------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  115 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHP------------------------------TTVAVGSKGGDIILWDYDVQNKTSFIQGM  115 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCT------------------------------TEEEEEEBTSCEEEEETTSTTCEEEECCC
T ss_pred             EEeccCCCCCEEEEEECCCCC------------------------------CEEEEEcCCCeEEEEeCCCcccceeeecC
Confidence            456678999999999998742                              257788889999999765     223  4


Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      +|.+.|++++|+|+++.+|++|+.|+.|++||+.. .....+...     .+|...|.+++|+|++++|+++    +.|+
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~----~~d~  185 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKT-----DSWDYWYCCVDVSVSRQMLATG----DSTG  185 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECC-----CCSSCCEEEEEEETTTTEEEEE----ETTS
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEecc-----CCCCCCeEEEEECCCCCEEEEE----CCCC
Confidence            79999999999995489999999999999999985 333333221     3566889999999999999999    9999


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC-EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      .|++||+. +   ..+..+..   |...|.+++|+| ++. +|++|+.|+.|++||+++..........  ..|...|.+
T Consensus       186 ~i~i~d~~-~---~~~~~~~~---h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~  255 (383)
T 3ei3_B          186 RLLLLGLD-G---HEIFKEKL---HKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAE--MPHEKPVNA  255 (383)
T ss_dssp             EEEEEETT-S---CEEEEEEC---SSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE--EECSSCEEE
T ss_pred             CEEEEECC-C---CEEEEecc---CCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEE--ecCCCceEE
Confidence            99999995 3   44555554   678899999999 777 9999999999999999984421112222  258999999


Q ss_pred             EEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeecc------------------CccEEEEeecCCCCCceEEEEEcCCC
Q 009203          380 VAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQI------------------ESKCMSVLPNPCDFNLFMVQTGTPGR  440 (540)
Q Consensus       380 l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~dg  440 (540)
                      ++|+| ++.+|++++.|+.|++||++++........                  ......+.++|++   .+  +|+.|+
T Consensus       256 ~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg---~~--s~s~d~  330 (383)
T 3ei3_B          256 AYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD---QL--LLNDKR  330 (383)
T ss_dssp             EEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT---TT--CTTCCC
T ss_pred             EEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCc---cc--ccCCCC
Confidence            99999 999999999999999999998766433221                  1344456666665   23  788999


Q ss_pred             eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .|++||+.+++......     ...|...+..++|+|+|++|++|+ ||.|+|||+++
T Consensus       331 ~i~iwd~~~~~~~~~l~-----~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          331 TIDIYDANSGGLVHQLR-----DPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CEEEEETTTCCEEEEEC-----BTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             eEEEEecCCCceeeeec-----CCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            99999999887543221     122567788889999999999997 99999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.3e-34  Score=291.92  Aligned_cols=283  Identities=16%  Similarity=0.172  Sum_probs=233.3

Q ss_pred             hcccccCce-EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          218 VSSLHKRKL-RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V-~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      .+.+|.+.| +++.|+   +.+|++|+.||+|++||+.+++....+        .+|...|.+++|++++ .|+++    
T Consensus       116 ~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~~~~--------~~h~~~V~~l~~~~~~-~l~s~----  179 (464)
T 3v7d_B          116 TLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQL--------SGHDGGVWALKYAHGG-ILVSG----  179 (464)
T ss_dssp             EEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECSTT-EEEEE----
T ss_pred             EEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEEEEE--------eCCCcCEEEEEEcCCC-EEEEE----
Confidence            357898885 676664   469999999999999999998766665        5899999999999988 89999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC-CCCCEEEEEecCCcEEEEecCCCCCcccc----------
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP-WENPCFATGGSDHAVVLWSERDAEDSWKP----------  365 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------  365 (540)
                      +.||.|++||+.++   ..+..+.+   |.+.|.+++|++ .++.+|++|+.||.|++||+.++......          
T Consensus       180 s~dg~i~vwd~~~~---~~~~~~~~---h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  253 (464)
T 3v7d_B          180 STDRTVRVWDIKKG---CCTHVFEG---HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF  253 (464)
T ss_dssp             ETTSCEEEEETTTT---EEEEEECC---CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred             eCCCCEEEEECCCC---cEEEEECC---CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence            99999999999986   55666664   678899999984 17789999999999999999987642211          


Q ss_pred             --------ceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEE
Q 009203          366 --------KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTG  436 (540)
Q Consensus       366 --------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  436 (540)
                              ......+|...|.++  +++++++++++.||.|++||+++++.+.... +...+.++.++|++   .++++|
T Consensus       254 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~sg  328 (464)
T 3v7d_B          254 HTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER---KRCISA  328 (464)
T ss_dssp             SCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT---TEEEEE
T ss_pred             eccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC---CEEEEE
Confidence                    012235688888877  5678999999999999999999988877654 56778899999987   689999


Q ss_pred             cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeE
Q 009203          437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFK  516 (540)
Q Consensus       437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~  516 (540)
                      +.||.|++||+.+++...       .+.+|...|.+++|+  +.+|++|+.||.|++||+.+  ....... .|...+..
T Consensus       329 ~~dg~i~vwd~~~~~~~~-------~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~--~~~~~~~-~~~~~~~~  396 (464)
T 3v7d_B          329 SMDTTIRIWDLENGELMY-------TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND--YSRKFSY-HHTNLSAI  396 (464)
T ss_dssp             ETTSCEEEEETTTTEEEE-------EECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT--CCEEEEE-ECTTCCCE
T ss_pred             eCCCcEEEEECCCCcEEE-------EEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC--Cceeeee-cCCCCccE
Confidence            999999999999876533       446789999999997  68999999999999999997  3433333 36667888


Q ss_pred             EEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          517 AVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       517 l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++|++++.+|++|+ ||.|++||+
T Consensus       397 ~~~~~~~~~l~~~~-dg~i~iwd~  419 (464)
T 3v7d_B          397 TTFYVSDNILVSGS-ENQFNIYNL  419 (464)
T ss_dssp             EEEEECSSEEEEEE-TTEEEEEET
T ss_pred             EEEEeCCCEEEEec-CCeEEEEEC
Confidence            99999999999998 999999995

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.2e-34  Score=284.05  Aligned_cols=294  Identities=12%  Similarity=0.073  Sum_probs=234.0

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----------h
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----------H  217 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----------~  217 (540)
                      ..+.+|...|.++++.|.                                 .+++++.|++|++|+..           .
T Consensus        10 ~~~~~h~~~i~~~~~~~~---------------------------------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~   56 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACNS---------------------------------FTVSCSGDGYLKVWDNKLLDNENPKDKSY   56 (397)
T ss_dssp             EESSCSSSCEEEEEECSS---------------------------------EEEEEETTSEEEEEESBCCTTCCGGGGEE
T ss_pred             hhhhhhhcCeEEEEecCC---------------------------------eEEEEcCCCEEEEEECCCcccccCCCcce
Confidence            345689999999998773                                 57788889999999654           2


Q ss_pred             hcccccCceEEEEEecC---CC---cEEEEEeCCceEEEEEcCCCCC-----cceeecccccCCCCC-----CCCceeEE
Q 009203          218 VSSLHKRKLRSLSLNPV---NE---QLFVTSALDGVIRLWQLQSRGS-----GASLLSTTDCLSPKH-----RRWPEDIA  281 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd---~~---~~l~tg~~dg~v~iw~~~~~~~-----~~~~~~~~~~~~~~h-----~~~V~~~~  281 (540)
                      .+.+|...|++++|+|+   ++   .+|++|+.||.|++|++.+++.     ...+        .+|     ...|.+++
T Consensus        57 ~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~  128 (397)
T 1sq9_A           57 SHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL--------DLLDSDMKKHSFWALK  128 (397)
T ss_dssp             EEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE--------CCSCTTGGGSCEEEEE
T ss_pred             EEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee--------cccccccCCCcEEEEE
Confidence            36799999999999993   27   8999999999999999998775     3333        355     58899999


Q ss_pred             Ee----cCCCe-EEEEeecCCCCCeEEEEecCC------CCCce--eEEeec----CCCCcccceeEEEEeCCCCCEEEE
Q 009203          282 WH----PQGNS-LFSAHTADSGDSQISVLNLNK------TKGRA--CVTFLD----DKPHVKGIINSIIFLPWENPCFAT  344 (540)
Q Consensus       282 ~~----~~~~~-l~s~~~~~~~d~~i~vwd~~~------~~~~~--~~~~~~----~~~~~~~~v~~~~~~p~~~~~l~s  344 (540)
                      |+    |++++ |+++    +.|+.|++||+.+      +....  ....+.    ....|...|.+++|+| ++ +|++
T Consensus       129 ~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~  202 (397)
T 1sq9_A          129 WGASNDRLLSHRLVAT----DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIAT  202 (397)
T ss_dssp             EECCC----CEEEEEE----ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEE
T ss_pred             EeeccCCCCceEEEEE----eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEE
Confidence            99    99999 9999    9999999999987      43222  000221    1123567899999999 88 9999


Q ss_pred             EecCCcEEEEecCCCCCccccceeeccc---C---CcceeEEEeccCCCEEEEEeCC---CeEEEEECCCCCeeeeec--
Q 009203          345 GGSDHAVVLWSERDAEDSWKPKALHRNL---H---SSAVMGVAGMQQKQIVLSAGAD---KRIIGFDAGVGRADFKHQ--  413 (540)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~---~~~v~~l~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~--  413 (540)
                      ++.||.|++||+++++..     .....   |   ...|.+++|+|++.+|++++.|   |.|++||+++++.+....  
T Consensus       203 ~~~dg~i~i~d~~~~~~~-----~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~  277 (397)
T 1sq9_A          203 GFNNGTVQISELSTLRPL-----YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  277 (397)
T ss_dssp             ECTTSEEEEEETTTTEEE-----EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             EeCCCcEEEEECCCCcee-----EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccC
Confidence            999999999999987642     22234   7   8899999999999999999999   999999999988876654  


Q ss_pred             ------------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc---------------
Q 009203          414 ------------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES---------------  466 (540)
Q Consensus       414 ------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---------------  466 (540)
                                  +...+.++.|+|++   .+|++++.||.|++||+.+++...... ......+|               
T Consensus       278 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~  353 (397)
T 1sq9_A          278 THSSQASLGEFAHSSWVMSLSFNDSG---ETLCSAGWDGKLRFWDVKTKERITTLN-MHCDDIEIEEDILAVDEHGDSLA  353 (397)
T ss_dssp             --------CCBSBSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTTEEEEEEE-CCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             cccccccccccccCCcEEEEEECCCC---CEEEEEeCCCeEEEEEcCCCceeEEEe-cccCcccchhhhhcccccccccc
Confidence                        56788999999987   699999999999999999876544322 00000134               


Q ss_pred             ccCeEEEEEcCCC----------CEEEEEeCCCcEEEEeccC
Q 009203          467 QSALINQSWSPDG----------LYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       467 ~~~v~~~~~sp~g----------~~l~sg~~dg~i~iwd~~~  498 (540)
                      ...|++++|+|+|          ++|++|+.||.|++|++.+
T Consensus       354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            8899999999998          7999999999999999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=284.14  Aligned_cols=325  Identities=13%  Similarity=0.139  Sum_probs=225.3

Q ss_pred             eeecCCcceeeEEEEcc-cccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhc---
Q 009203          149 TQASPAAHSIGIVKVKG-EKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVS---  219 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~---  219 (540)
                      ..+.+|...|.++++.| ..                               ..+++++.|+.|++|+..     ..+   
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~-------------------------------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~   85 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEG-------------------------------RYMLSGGSDGVIVLYDLENSSRQSYYTCK   85 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTC-------------------------------CEEEEEETTSCEEEEECCCCSSSSCEEEC
T ss_pred             eeeeccCCcEEEEEEecCCC-------------------------------CEEEEEcCCCeEEEEECCCCcccceEecc
Confidence            34467999999999998 53                               257788889999999765     111   


Q ss_pred             ----------ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC---
Q 009203          220 ----------SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG---  286 (540)
Q Consensus       220 ----------~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~---  286 (540)
                                .+|.+.|++++|+|+++.+|++|+.||.|++||+.+++....+         .+...+.+++|++.+   
T Consensus        86 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  156 (408)
T 4a11_B           86 AVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF---------NFEETVYSHHMSPVSTKH  156 (408)
T ss_dssp             EEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE---------ECSSCEEEEEECSSCSSC
T ss_pred             ccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec---------cCCCceeeeEeecCCCCC
Confidence                      3699999999999965889999999999999999987765554         355678999999854   


Q ss_pred             CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC-EEEEEecCCcEEEEecCCCCCccc-
Q 009203          287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDHAVVLWSERDAEDSWK-  364 (540)
Q Consensus       287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-  364 (540)
                      .+|+++    +.++.|++||+.++   ..+..+..   |.+.|.+++|+| ++. +|++|+.||.|++||++.+..... 
T Consensus       157 ~~~~~~----~~~~~v~~~d~~~~---~~~~~~~~---~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~  225 (408)
T 4a11_B          157 CLVAVG----TRGPKVQLCDLKSG---SCSHILQG---HRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLIT  225 (408)
T ss_dssp             CEEEEE----ESSSSEEEEESSSS---CCCEEECC---CCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred             cEEEEE----cCCCeEEEEeCCCc---ceeeeecC---CCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence            489999    99999999999976   33555554   567899999999 766 699999999999999987652100 


Q ss_pred             c----------ceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------CccEEEEeecCCC
Q 009203          365 P----------KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-------ESKCMSVLPNPCD  427 (540)
Q Consensus       365 ~----------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~  427 (540)
                      .          .......|...|.+++|+|++++|++++.||.|++||+.+++.......       ............ 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  304 (408)
T 4a11_B          226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCS-  304 (408)
T ss_dssp             CCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSS-
T ss_pred             ccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCC-
Confidence            0          0011145889999999999999999999999999999998876443211       111122222222 


Q ss_pred             CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc
Q 009203          428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI  507 (540)
Q Consensus       428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~  507 (540)
                         ..+++++.++.|++||+.++....       .+.+|...|++++|+|++++|++|+.||.|++||+.+  .+++...
T Consensus       305 ---~~~~~~~~~~~i~v~d~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~  372 (408)
T 4a11_B          305 ---SEFVFVPYGSTIAVYTVYSGEQIT-------MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL--YEPVPDD  372 (408)
T ss_dssp             ---SCEEEEEETTEEEEEETTTCCEEE-------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------
T ss_pred             ---ceEEEEecCCEEEEEECcCCccee-------eeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC--CCccCCC
Confidence               356667789999999999877543       4467899999999999999999999999999999997  4555444


Q ss_pred             cccccceeEEEEcC-CCCEEEEEEcCCcEEEEeC
Q 009203          508 RAHQKRVFKAVWHY-SHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       508 ~~h~~~i~~l~~s~-~~~~l~s~~~dg~v~iw~l  540 (540)
                      ..+.   ....+.+ +...+.+++.|+.+++|+.
T Consensus       373 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~  403 (408)
T 4a11_B          373 DETT---TKSQLNPAFEDAWSSSDEEGGTSAWSH  403 (408)
T ss_dssp             ----------------------------------
T ss_pred             CceE---eccccccccceeecccCccCceeecCC
Confidence            3322   2223333 3345667788999999973

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.4e-34  Score=279.93  Aligned_cols=298  Identities=15%  Similarity=0.131  Sum_probs=233.0

Q ss_pred             cCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhcccccC
Q 009203          152 SPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSSLHKR  224 (540)
Q Consensus       152 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~~h~~  224 (540)
                      ..|...|.++.+.|...                               .+++++.|+.|++|+..       ..+.+|.+
T Consensus         5 ~~~~~~i~~~~~s~~~~-------------------------------~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~   53 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRT-------------------------------QIAICPNNHEVHIYEKSGNKWVQVHELKEHNG   53 (372)
T ss_dssp             ESCSSCCCEEEECTTSS-------------------------------EEEEECSSSEEEEEEEETTEEEEEEEEECCSS
T ss_pred             cccCCCeEEEEECCCCC-------------------------------EEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC
Confidence            35778888888888742                               46777889999999654       34779999


Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      .|++++|+|+ +.+|++|+.||.|++||+.+++.......      .+|...|.+++|+|++++|+++    +.|+.|++
T Consensus        54 ~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~----~~d~~v~i  122 (372)
T 1k8k_C           54 QVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVI------LRINRAARCVRWAPNEKKFAVG----SGSRVISI  122 (372)
T ss_dssp             CEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEEC------CCCSSCEEEEEECTTSSEEEEE----ETTSSEEE
T ss_pred             cccEEEEeCC-CCEEEEEcCCCeEEEEECCCCeeeeeEEe------ecCCCceeEEEECCCCCEEEEE----eCCCEEEE
Confidence            9999999995 99999999999999999987653333221      4688899999999999999999    99999999


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCc-------------cccceeecc
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDS-------------WKPKALHRN  371 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~  371 (540)
                      ||+..+........+..  .|...|.+++|+| ++.+|++++.||.|++||++.....             .........
T Consensus       123 ~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (372)
T 1k8k_C          123 CYFEQENDWWVCKHIKK--PIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS  199 (372)
T ss_dssp             EEEETTTTEEEEEEECT--TCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred             EEecCCCcceeeeeeec--ccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence            99997743333333322  3577899999999 9999999999999999997522100             001122224


Q ss_pred             cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC-
Q 009203          372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL-  449 (540)
Q Consensus       372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-  449 (540)
                      .|...|.+++|+|++++|++++.||.|++||+++++.+..... ...+.++.|+|++   .++++| .|+.|++||+.+ 
T Consensus       200 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-~d~~i~i~~~~~~  275 (372)
T 1k8k_C          200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES---SLVAAG-HDCFPVLFTYDSA  275 (372)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT---EEEEEE-TTSSCEEEEEETT
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCC---CEEEEE-eCCeEEEEEccCc
Confidence            6889999999999999999999999999999999988766544 4578899999987   677777 899999999987 


Q ss_pred             -Ccc-eeeee-----------------------c-c-------ccccCccccCeEEEEEc-CCC---CEEEEEeCCCcEE
Q 009203          450 -RQT-EIHAF-----------------------G-W-------KQESSESQSALINQSWS-PDG---LYITSGSADPVIH  492 (540)
Q Consensus       450 -~~~-~~~~~-----------------------~-~-------~~~~~~~~~~v~~~~~s-p~g---~~l~sg~~dg~i~  492 (540)
                       +.- ....+                       + .       .....+|...|++++|+ ++|   .+|++|+.||.|+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~  355 (372)
T 1k8k_C          276 AGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS  355 (372)
T ss_dssp             TTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred             CceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceE
Confidence             320 00000                       0 0       11224899999999966 677   9999999999999


Q ss_pred             EEeccC
Q 009203          493 LFDIRY  498 (540)
Q Consensus       493 iwd~~~  498 (540)
                      +|++.+
T Consensus       356 ~W~~~~  361 (372)
T 1k8k_C          356 IWDVRS  361 (372)
T ss_dssp             EEEHHH
T ss_pred             EEEecC
Confidence            999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-35  Score=285.82  Aligned_cols=256  Identities=15%  Similarity=0.206  Sum_probs=201.1

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC--CCcceeecccccCCCCCCCCceeEEEecC--CCeEEEE
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR--GSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSA  292 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~--~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~  292 (540)
                      .++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+...  .....+        .+|...|++++|+++  +.+|+++
T Consensus         5 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~l~s~   75 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTL--------TGHEGPVWRVDWAHPKFGTILASC   75 (379)
T ss_dssp             CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEE--------CCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             EEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEe--------cCCCCcEEEEEeCCCCCCCEEEEe
Confidence            457899999999999996 899999999999999999743  222233        589999999999987  8999999


Q ss_pred             eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203          293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                          +.|+.|++||+.++.. ..+..+..   |...|.+++|+| +  +.+|++++.|+.|++||+..+..   ......
T Consensus        76 ----~~dg~v~iwd~~~~~~-~~~~~~~~---~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~  143 (379)
T 3jrp_A           76 ----SYDGKVLIWKEENGRW-SQIAVHAV---HSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGT---TSPIII  143 (379)
T ss_dssp             ----ETTSCEEEEEEETTEE-EEEEEECC---CSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSC---CCEEEE
T ss_pred             ----ccCCEEEEEEcCCCce-eEeeeecC---CCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCc---eeeEEe
Confidence                9999999999997621 23444443   677899999999 7  89999999999999999998754   233334


Q ss_pred             ccCCcceeEEEeccC-------------CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc
Q 009203          371 NLHSSAVMGVAGMQQ-------------KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      ..|...|.+++|+|.             +.+|++++.||.|++||+++                                
T Consensus       144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------------------------------  191 (379)
T 3jrp_A          144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS--------------------------------  191 (379)
T ss_dssp             ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET--------------------------------
T ss_pred             cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC--------------------------------
Confidence            568999999999994             55555555555555555543                                


Q ss_pred             CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC---CCEEEEEeCCCcEEEEeccCCCCc---ccccccccc
Q 009203          438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD---GLYITSGSADPVIHLFDIRYSANK---PSQSIRAHQ  511 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~h~  511 (540)
                                  .......   ...+.+|...|++++|+|+   +.+|++++.||.|++||+......   .+.....|.
T Consensus       192 ------------~~~~~~~---~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  256 (379)
T 3jrp_A          192 ------------DAQTYVL---ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP  256 (379)
T ss_dssp             ------------TTTEEEE---EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCS
T ss_pred             ------------CCcceee---EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCC
Confidence                        2211111   1134568889999999999   899999999999999999974211   222334588


Q ss_pred             cceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          512 KRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       512 ~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ..|++++|+|+|++|++++.||.|++|++
T Consensus       257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          257 DVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            89999999999999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.9e-35  Score=283.08  Aligned_cols=294  Identities=12%  Similarity=0.125  Sum_probs=233.1

Q ss_pred             ecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCC---CCeEEEeccc------hhccc
Q 009203          151 ASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSAS---PATIHCHTSN------HVSSL  221 (540)
Q Consensus       151 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---d~~i~~~~~~------~~~~~  221 (540)
                      ..+|...|.++.+.|..+                              ..++.++.   |++|++|+..      ....+
T Consensus        14 ~~~h~~~v~~~~~~p~~~------------------------------~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~   63 (357)
T 3i2n_A           14 QKGFNYTVFDCKWVPCSA------------------------------KFVTMGNFARGTGVIQLYEIQHGDLKLLREIE   63 (357)
T ss_dssp             EEECSSCEEEEEECTTSS------------------------------EEEEEEC--CCCEEEEEEEECSSSEEEEEEEE
T ss_pred             ccCCCCceEEEEEcCCCc------------------------------eEEEecCccCCCcEEEEEeCCCCcccceeeec
Confidence            357999999999998743                              13455555   8999999764      12348


Q ss_pred             ccCceEEEEEecCC--CcEEEEEeCCceEEEEEcCCCC-CcceeecccccCCCCCCCCceeEEE------ecCCCeEEEE
Q 009203          222 HKRKLRSLSLNPVN--EQLFVTSALDGVIRLWQLQSRG-SGASLLSTTDCLSPKHRRWPEDIAW------HPQGNSLFSA  292 (540)
Q Consensus       222 h~~~V~~l~~spd~--~~~l~tg~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~------~~~~~~l~s~  292 (540)
                      |.+.|++++|+|++  +.+|++|+.||.|++||+.+++ ....+        .+|...|.+++|      +|++++|+++
T Consensus        64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~s~~~~~l~~~  135 (357)
T 3i2n_A           64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV--------KGHKEIINAIDGIGGLGIGEGAPEIVTG  135 (357)
T ss_dssp             ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE--------CCCSSCEEEEEEESGGGCC-CCCEEEEE
T ss_pred             ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE--------EecccceEEEeeccccccCCCccEEEEE
Confidence            99999999999963  6999999999999999999877 44444        589999999955      6789999999


Q ss_pred             eecCCCCCeEEEEecCCCCCceeEEeecCCC-CcccceeEEE----EeCCCCCEEEEEecCCcEEEEecCCCCCccccce
Q 009203          293 HTADSGDSQISVLNLNKTKGRACVTFLDDKP-HVKGIINSII----FLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA  367 (540)
Q Consensus       293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~----~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  367 (540)
                          +.|+.|++||+.++.  ..+..+..+. ++...+.+++    |+| ++.+|++++.||.|++||+++++.      
T Consensus       136 ----~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~------  202 (357)
T 3i2n_A          136 ----SRDGTVKVWDPRQKD--DPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMAL------  202 (357)
T ss_dssp             ----ETTSCEEEECTTSCS--SCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEE------
T ss_pred             ----eCCCeEEEEeCCCCC--CcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCce------
Confidence                999999999999763  2344444322 2244789998    677 999999999999999999998763      


Q ss_pred             eecccCCcceeEEEecc---CCCEEEEEeCCCeEEEEECCCCCeeeee------ccCccEEEEeecCCCCCce-EEEEEc
Q 009203          368 LHRNLHSSAVMGVAGMQ---QKQIVLSAGADKRIIGFDAGVGRADFKH------QIESKCMSVLPNPCDFNLF-MVQTGT  437 (540)
Q Consensus       368 ~~~~~~~~~v~~l~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~l~~~~  437 (540)
                      .....|...|.+++|+|   ++.+|++++.||.|++||+++++.....      .+...+.++.|+|++   . ++++++
T Consensus       203 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~  279 (357)
T 3i2n_A          203 RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN---RELFLTAG  279 (357)
T ss_dssp             EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE---EEEEEEEE
T ss_pred             eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC---CcEEEEEe
Confidence            22244889999999999   9999999999999999999876654332      466788999999986   5 899999


Q ss_pred             CCCeEEEEECCCCcceee------------eeccccccCccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeccC
Q 009203          438 PGRQLRLYDIRLRQTEIH------------AFGWKQESSESQSALINQSWSPDGLYIT-SGSADPVIHLFDIRY  498 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~sp~g~~l~-sg~~dg~i~iwd~~~  498 (540)
                      .||.|++||++.......            .+.....+.+|...|++++|+|+|++|+ +++.||.|+|||+.+
T Consensus       280 ~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          280 GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            999999999986543210            0011224567899999999999999998 899999999999986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-34  Score=279.79  Aligned_cols=302  Identities=18%  Similarity=0.170  Sum_probs=218.5

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCCeEEEEee
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSAHT  294 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~  294 (540)
                      .++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+.++.....+....    .+|...|.+++|+|  ++.+|+++  
T Consensus         5 ~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~d~~~l~s~--   77 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSW----RAHDSSIVAIDWASPEYGRIIASA--   77 (351)
T ss_dssp             CEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEE----ECCSSCEEEEEECCGGGCSEEEEE--
T ss_pred             ccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceeccee----ccCCCcEEEEEEcCCCCCCEEEEE--
Confidence            456899999999999995 9999999999999999998765433333222    47999999999999  69999999  


Q ss_pred             cCCCCCeEEEEecCCCCCc------eeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccc
Q 009203          295 ADSGDSQISVLNLNKTKGR------ACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPK  366 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (540)
                        +.|+.|++||+.++...      ..+..+..   |.+.|.+++|+| +  +.+|++++.||.|++||+++++......
T Consensus        78 --~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  151 (351)
T 3f3f_A           78 --SYDKTVKLWEEDPDQEECSGRRWNKLCTLND---SKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWT  151 (351)
T ss_dssp             --ETTSCEEEEEECTTSCTTSSCSEEEEEEECC---CSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred             --cCCCeEEEEecCCCcccccccCcceeeeecc---cCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence              99999999999876321      33445543   678899999999 7  9999999999999999999887533222


Q ss_pred             e--------eecccCCcceeEEEeccC---CCEEEEEeCCCeEEEEECCCCCe--eee-eccCccEEEEeecCCCCC-ce
Q 009203          367 A--------LHRNLHSSAVMGVAGMQQ---KQIVLSAGADKRIIGFDAGVGRA--DFK-HQIESKCMSVLPNPCDFN-LF  431 (540)
Q Consensus       367 ~--------~~~~~~~~~v~~l~~s~~---~~~l~~~~~dg~i~iwd~~~~~~--~~~-~~~~~~~~~~~~~~~~~~-~~  431 (540)
                      .        +....|...+.+++|+|+   +.++++++.++.+.+|+...+..  +.. ..+...+.++.|+|++.. ..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~  231 (351)
T 3f3f_A          152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ  231 (351)
T ss_dssp             EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred             ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence            1        111357889999999997   99999999999998888887765  222 234678899999998521 14


Q ss_pred             EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe----CCCcEEEEeccCCCCcccccc
Q 009203          432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS----ADPVIHLFDIRYSANKPSQSI  507 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~----~dg~i~iwd~~~~~~~~~~~~  507 (540)
                      +|++|+.||.|++||++........       ..+...+....+++....++.+.    ....+.+|+...  ...+..+
T Consensus       232 ~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  302 (351)
T 3f3f_A          232 LIATGCKDGRIRIFKITEKLSPLAS-------EESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ--VELLSEH  302 (351)
T ss_dssp             EEEEEETTSCEEEEEEEECC----------------------------------------------CCSEE--EEEEEEE
T ss_pred             EEEEEcCCCeEEEEeCCCCcCcccc-------CCcccceeccCCCcccccccccccccccceeeeeccccc--ccEEEEE
Confidence            8999999999999999876543321       12222333444444444444443    344555666554  5677888


Q ss_pred             cccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          508 RAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       508 ~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .+|...|++++|+|++++|++++.||.|+||++
T Consensus       303 ~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             ecccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence            899999999999999999999999999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-34  Score=281.57  Aligned_cols=296  Identities=15%  Similarity=0.164  Sum_probs=226.7

Q ss_pred             ecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcc-----
Q 009203          151 ASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSS-----  220 (540)
Q Consensus       151 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~-----  220 (540)
                      ..+|...|.++++.|..+     +..                      ..+..+..++.|++|+..     ..+.     
T Consensus        14 ~~~h~~~v~~i~~~p~~~-----~~~----------------------~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~   66 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSK-----EGD----------------------PLVFATVGSNRVTLYECHSQGEIRLLQSYVDA   66 (366)
T ss_dssp             ECTTCSCEEEEEECTTCC-----TTS----------------------CEEEEEEETTEEEEEEECGGGCEEEEEEEECS
T ss_pred             ecCCCCceEEEEEecccC-----CCC----------------------ceEEEECCCCEEEEEEcCCCcEEEeeeecccc
Confidence            348999999999998411     000                      112233334589999654     1233     


Q ss_pred             cccCceEEEEEecCC---CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecC
Q 009203          221 LHKRKLRSLSLNPVN---EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTAD  296 (540)
Q Consensus       221 ~h~~~V~~l~~spd~---~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~  296 (540)
                      .|...|++++|+|+.   +.+|++|+.||.|++||+.+++....+        .+|...|.+++|+| ++.+|+++    
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~l~s~----  134 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY--------VGHGNAINELKFHPRDPNLLLSV----  134 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE--------ESCCSCEEEEEECSSCTTEEEEE----
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee--------cCCCCcEEEEEECCCCCCEEEEE----
Confidence            366889999999952   569999999999999999988766655        47889999999999 89999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc----------
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK----------  366 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------  366 (540)
                      +.|+.|++||+.++   ..+..+.....|...|.+++|+| ++.+|++++.||.|++||+++++......          
T Consensus       135 ~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (366)
T 3k26_A          135 SKDHALRLWNIQTD---TLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT  210 (366)
T ss_dssp             ETTSCEEEEETTTT---EEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred             eCCCeEEEEEeecC---eEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCC
Confidence            99999999999976   55666533334778899999999 99999999999999999999865321111          


Q ss_pred             -------------eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--------------eee-eccCccE
Q 009203          367 -------------ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--------------DFK-HQIESKC  418 (540)
Q Consensus       367 -------------~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~-~~~~~~~  418 (540)
                                   ......|...|.+++|+  +++|++++.||.|++||++++..              +.. ......+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  288 (366)
T 3k26_A          211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI  288 (366)
T ss_dssp             SSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS
T ss_pred             cccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE
Confidence                         01112388999999998  78999999999999999987654              222 1223455


Q ss_pred             EEEeecCC--CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc--ccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 009203          419 MSVLPNPC--DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES--QSALINQSWSPDGLYITSGSADPVIHLF  494 (540)
Q Consensus       419 ~~~~~~~~--~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~sg~~dg~i~iw  494 (540)
                      .++.|+|+  +   .+|++|+.||.|++||+.+++......   ..+.+|  ...|++++|+|++++|++++.||.|++|
T Consensus       289 ~~~~~s~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  362 (366)
T 3k26_A          289 WYMRFSMDFWQ---KMLALGNQVGKLYVWDLEVEDPHKAKC---TTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW  362 (366)
T ss_dssp             SCCCCEECTTS---SEEEEECTTSCEEEEECCSSSGGGCEE---EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             EEEEEcCCCCC---cEEEEEecCCcEEEEECCCCCCccccc---eEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence            66777776  5   699999999999999999876432111   133445  7899999999999999999999999999


Q ss_pred             ecc
Q 009203          495 DIR  497 (540)
Q Consensus       495 d~~  497 (540)
                      |+.
T Consensus       363 d~~  365 (366)
T 3k26_A          363 DRL  365 (366)
T ss_dssp             EC-
T ss_pred             Eec
Confidence            986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.8e-35  Score=288.17  Aligned_cols=289  Identities=17%  Similarity=0.230  Sum_probs=226.2

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec-CCCeEEEEeecCCCCCeEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP-QGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~s~~~~~~~d~~i~  303 (540)
                      ....++++|+...++++|+.||.|+||++...........    ...+|...|++++|+| ++.+|+++    +.||.|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~----~~~~h~~~V~~~~~~p~~~~~l~s~----s~dg~v~  107 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVP----LVCGHTAPVLDIAWCPHNDNVIASG----SEDCTVM  107 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCC----CBCCCSSCEEEEEECTTCTTEEEEE----ETTSEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCc----eEecCCCCEEEEEeCCCCCCEEEEE----eCCCeEE
Confidence            3456889996444556689999999999976432211111    1158999999999999 89999999    9999999


Q ss_pred             EEecCCCCCc----eeEEeecCCCCcccceeEEEEeCCCC-CEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          304 VLNLNKTKGR----ACVTFLDDKPHVKGIINSIIFLPWEN-PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       304 vwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      +||+.++...    ..+..+.+   |...|.+++|+| ++ .+|++|+.||.|++||+.+++.   ...+....|...|.
T Consensus       108 vw~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~  180 (402)
T 2aq5_A          108 VWEIPDGGLVLPLREPVITLEG---HTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAA---VLTLGPDVHPDTIY  180 (402)
T ss_dssp             EEECCTTCCSSCBCSCSEEEEC---CSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEE---EEEECTTTCCSCEE
T ss_pred             EEEccCCCCccccCCceEEecC---CCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCc---cEEEecCCCCCceE
Confidence            9999876321    23444544   678899999999 76 7999999999999999998874   22221146899999


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-c-cCc-cEEEEeecCCCCCceEEEEE---cCCCeEEEEECCCCcc
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-Q-IES-KCMSVLPNPCDFNLFMVQTG---TPGRQLRLYDIRLRQT  452 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~l~~~---~~dg~v~i~d~~~~~~  452 (540)
                      +++|+|++.+|++++.||.|++||+++++.+... . +.. .+..+.|+|++   .++++|   +.|+.|++||+++...
T Consensus       181 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEG---KILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTT---EEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             EEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCC---cEEEEeccCCCCceEEEEcCccccC
Confidence            9999999999999999999999999998887665 2 222 37889999987   788888   7999999999998765


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeccCCCCcc-cccccc--cccceeEEEEcCCCCEEEE
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYIT-SGSADPVIHLFDIRYSANKP-SQSIRA--HQKRVFKAVWHYSHPLLIS  528 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-sg~~dg~i~iwd~~~~~~~~-~~~~~~--h~~~i~~l~~s~~~~~l~s  528 (540)
                      .....     ...|...+.+++|+|++++|+ +|+.||.|++||+.+  +.+ +..+..  |...|.+++|+|++.++++
T Consensus       258 ~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~--~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s  330 (402)
T 2aq5_A          258 PLSLQ-----ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS--EAPFLHYLSMFSSKESQRGMGYMPKRGLEVN  330 (402)
T ss_dssp             CSEEE-----ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS--STTCEEEEEEECCSSCCSEEEECCGGGSCGG
T ss_pred             CceEE-----eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC--CCcceEeecccccCCcccceEEeccccccee
Confidence            33322     124667899999999999986 555799999999997  342 444544  4589999999999998875


Q ss_pred             EEcCCcEEEEeC
Q 009203          529 ISSDLNIGLHKI  540 (540)
Q Consensus       529 ~~~dg~v~iw~l  540 (540)
                        .|+.+++|++
T Consensus       331 --~~~~~~~~~l  340 (402)
T 2aq5_A          331 --KCEIARFYKL  340 (402)
T ss_dssp             --GTEEEEEEEE
T ss_pred             --cceeEEEEEc
Confidence              5779999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-34  Score=283.50  Aligned_cols=277  Identities=15%  Similarity=0.114  Sum_probs=203.0

Q ss_pred             eEEecCCCCeEEEeccc-------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC---CcceeecccccC
Q 009203          200 LVRTSASPATIHCHTSN-------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG---SGASLLSTTDCL  269 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~---~~~~~~~~~~~~  269 (540)
                      .+++++.|+.|++|+..       ..+.+|.+.|++++|+|+ +.+|++|+.||+|++||+.++.   ....+       
T Consensus        25 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-------   96 (377)
T 3dwl_C           25 EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-------   96 (377)
T ss_dssp             EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT-TCCEEEEETTSSEEEC------CCCCEEEC-------
T ss_pred             EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-------
Confidence            57788889999999654       357899999999999996 8999999999999999998876   22222       


Q ss_pred             CCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203          270 SPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH  349 (540)
Q Consensus       270 ~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  349 (540)
                       .+|...|.+++|+|++++|+++    +.|+.|++||+.++........+..  .|...|.+++|+| ++.+|++|+.|+
T Consensus        97 -~~~~~~v~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~~~~~d~  168 (377)
T 3dwl_C           97 -LRLNRAATFVRWSPNEDKFAVG----SGARVISVCYFEQENDWWVSKHLKR--PLRSTILSLDWHP-NNVLLAAGCADR  168 (377)
T ss_dssp             -CCCSSCEEEEECCTTSSCCEEE----ESSSCEEECCC-----CCCCEEECS--SCCSCEEEEEECT-TSSEEEEEESSS
T ss_pred             -cccCCceEEEEECCCCCEEEEE----ecCCeEEEEEECCcccceeeeEeec--ccCCCeEEEEEcC-CCCEEEEEeCCC
Confidence             4789999999999999999999    9999999999997643223444443  2678899999999 999999999999


Q ss_pred             cEEEEecCCCCCccc------------cceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe----eee-e
Q 009203          350 AVVLWSERDAEDSWK------------PKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA----DFK-H  412 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~-~  412 (540)
                      .|++||+........            ...+....|...|.+++|+|++++|++++.||.|++||+++++.    +.. .
T Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  248 (377)
T 3dwl_C          169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK  248 (377)
T ss_dssp             CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE
T ss_pred             EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec
Confidence            999999964331100            01111126899999999999999999999999999999999876    443 3


Q ss_pred             ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc-ceeeeec---------------------------------
Q 009203          413 QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ-TEIHAFG---------------------------------  458 (540)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~---------------------------------  458 (540)
                      .+...+.++.|+|++   .+|++|+.++.+ +|+..... .....+.                                 
T Consensus       249 ~~~~~v~~~~~s~~~---~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (377)
T 3dwl_C          249 LSQLPLRSLLWANES---AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF  324 (377)
T ss_dssp             CSSSCEEEEEEEETT---EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred             CCCCceEEEEEcCCC---CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence            345678899999987   788888766666 66665221 0000000                                 


Q ss_pred             -----------cccccCccccCeEEEEEcCCC-C---EEEEEeCCCcEEEEec
Q 009203          459 -----------WKQESSESQSALINQSWSPDG-L---YITSGSADPVIHLFDI  496 (540)
Q Consensus       459 -----------~~~~~~~~~~~v~~~~~sp~g-~---~l~sg~~dg~i~iwd~  496 (540)
                                 .......|...|+++++.+.. .   .|++|+.||.|+|||+
T Consensus       325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                       000112399999999976543 3   6999999999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.3e-33  Score=280.03  Aligned_cols=272  Identities=18%  Similarity=0.233  Sum_probs=228.5

Q ss_pred             hcccccCce-EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          218 VSSLHKRKL-RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V-~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      ++.+|.+.| +|+.+  + +.+|++|+.||+|++||+.+++....+        .+|...|.+++|+  +++|+++    
T Consensus       113 ~l~~h~~~v~~~~~~--~-g~~l~sg~~dg~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~~--~~~l~s~----  175 (445)
T 2ovr_B          113 VLKGHDDHVITCLQF--C-GNRIVSGSDDNTLKVWSAVTGKCLRTL--------VGHTGGVWSSQMR--DNIIISG----  175 (445)
T ss_dssp             EEECSTTSCEEEEEE--E-TTEEEEEETTSCEEEEETTTCCEEEEC--------CCCSSCEEEEEEE--TTEEEEE----
T ss_pred             EecccCCCcEEEEEE--c-CCEEEEEECCCcEEEEECCCCcEEEEE--------cCCCCCEEEEEec--CCEEEEE----
Confidence            357898875 55544  3 779999999999999999988766655        5899999999998  5699999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.||.|++||+.++   ..+..+.+   |...|.++.|++   ..+++|+.||.|++||+.+++.   ...+  .+|...
T Consensus       176 ~~dg~i~vwd~~~~---~~~~~~~~---h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~---~~~~--~~~~~~  241 (445)
T 2ovr_B          176 STDRTLKVWNAETG---ECIHTLYG---HTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQC---LHVL--MGHVAA  241 (445)
T ss_dssp             ETTSCEEEEETTTT---EEEEEECC---CSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCE---EEEE--ECCSSC
T ss_pred             eCCCeEEEEECCcC---cEEEEECC---CCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcE---EEEE--cCCccc
Confidence            99999999999986   55666664   677899999964   6899999999999999998874   2222  468999


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      |.+++|  ++.++++++.||.|++||+++++.+.... +...+.++.++.     .++++++.|+.|++||+++++... 
T Consensus       242 v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~-  313 (445)
T 2ovr_B          242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG-----IHVVSGSLDTSIRVWDVETGNCIH-  313 (445)
T ss_dssp             EEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECS-----SEEEEEETTSCEEEEETTTCCEEE-
T ss_pred             EEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECC-----CEEEEEeCCCeEEEEECCCCCEEE-
Confidence            999999  68999999999999999999988876654 456778888833     589999999999999999877543 


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc---cccceeEEEEcCCCCEEEEEEcC
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA---HQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~---h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                            .+.+|...+.++.+  ++++|++|+.||.|++||+.+  ++.+..+..   |...|++++|+  +++|++|+.|
T Consensus       314 ------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d  381 (445)
T 2ovr_B          314 ------TLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKT--GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD  381 (445)
T ss_dssp             ------EECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTT--CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT
T ss_pred             ------EEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCC--CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC
Confidence                  34578888988887  567999999999999999987  677777765   88899999995  6899999999


Q ss_pred             CcEEEEeC
Q 009203          533 LNIGLHKI  540 (540)
Q Consensus       533 g~v~iw~l  540 (540)
                      |.|++||+
T Consensus       382 g~v~iwd~  389 (445)
T 2ovr_B          382 GTVKLWDL  389 (445)
T ss_dssp             SEEEEEET
T ss_pred             CeEEEEEC
Confidence            99999985

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.8e-34  Score=277.51  Aligned_cols=254  Identities=10%  Similarity=0.085  Sum_probs=196.5

Q ss_pred             cccccCceEEEEEecCCCcEEEEE-----------eCCceEEEEEcCCCCCcceeecccc-cCCCCCCCCceeEEEecCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTS-----------ALDGVIRLWQLQSRGSGASLLSTTD-CLSPKHRRWPEDIAWHPQG  286 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg-----------~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~h~~~V~~~~~~~~~  286 (540)
                      +.+|.+.|.++++++   ..+++|           +.|+.+++|++.............. .....+...+.+++|+|||
T Consensus        69 l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg  145 (365)
T 4h5i_A           69 LEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG  145 (365)
T ss_dssp             CCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred             ccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence            678999999998864   356655           4578899999877654333322211 1113566779999999999


Q ss_pred             CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc
Q 009203          287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK  366 (540)
Q Consensus       287 ~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  366 (540)
                      ++|++++  ++.|++|+|||+.++   .++..+.    |.+.|.+++|+| ++.+|++++.+ .+.+|+..++..   ..
T Consensus       146 ~~la~as--~~~d~~i~iwd~~~~---~~~~~~~----~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~---~~  211 (365)
T 4h5i_A          146 TVAAIAS--SKVPAIMRIIDPSDL---TEKFEIE----TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSC---IA  211 (365)
T ss_dssp             SCEEEEE--SCSSCEEEEEETTTT---EEEEEEE----CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCE---EE
T ss_pred             CEEEEEE--CCCCCEEEEeECCCC---cEEEEeC----CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcc---ee
Confidence            9987652  157999999999986   4455554    356799999999 99999999865 566777766653   22


Q ss_pred             eeecccCCcceeEEEeccCCCEEEEEeCCC----eEEEEECCCCCeee-----eeccCccEEEEeecCCCCCceEEEEEc
Q 009203          367 ALHRNLHSSAVMGVAGMQQKQIVLSAGADK----RIIGFDAGVGRADF-----KHQIESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       367 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      ......|...|.+++|+|++.++++++.|+    .+++||+.......     .......+.+++|+|++   .+|++|+
T Consensus       212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg---~~lasgs  288 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG---ELAVLAS  288 (365)
T ss_dssp             EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS---CEEEEEE
T ss_pred             eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC---CceEEEc
Confidence            233356889999999999999999999887    68899987665421     23445678999999988   7999999


Q ss_pred             CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .|++|+|||+.+++....      .+.+|...|++++|||||++||+|+.|++|+||++..
T Consensus       289 ~D~~V~iwd~~~~~~~~~------~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          289 NDNSIALVKLKDLSMSKI------FKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTSCEEEEETTTTEEEEE------ETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCEEEEEECCCCcEEEE------ecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999998875443      2468999999999999999999999999999999974

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-35  Score=296.80  Aligned_cols=261  Identities=15%  Similarity=0.119  Sum_probs=193.4

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC------CCeEEEEeecCCCCCeEEEEecCC
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ------GNSLFSAHTADSGDSQISVLNLNK  309 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~------~~~l~s~~~~~~~d~~i~vwd~~~  309 (540)
                      +.+|++|+.|++|+||++.+++.........    .+|.+.|.+++|+|+      +.+||++    +.||+|++||+.+
T Consensus       173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l----~~~~~~V~~v~wsp~~~~~~~~~~LAs~----s~DgtvrlWd~~~  244 (524)
T 2j04_B          173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI----VHSFGEVWDLKWHEGCHAPHLVGCLSFV----SQEGTINFLEIID  244 (524)
T ss_dssp             ---------CEEEEEEEEETTTCCEEEEEEE----EECCCSEEEEEECSSCCCSSSSCEEEEE----ETTSCEEEEECCC
T ss_pred             hhhhccCCCCceEEEEEccCCCCCceEEEEE----EecCCcEEEEEECCCCCCCCCCceEEEE----ecCCeEEEEEcCC
Confidence            3445557789999999998766432211111    356788999999997      5799999    9999999999986


Q ss_pred             CCCc--------eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE-
Q 009203          310 TKGR--------ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV-  380 (540)
Q Consensus       310 ~~~~--------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l-  380 (540)
                      +...        .....+.+   |...|.+++|++ + ..|++|+.||+|++||++++..    ......+|...|+++ 
T Consensus       245 ~~~~~~~~~~~~~p~~~l~~---h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~----~~~~~~~H~~~V~sv~  315 (524)
T 2j04_B          245 NATDVHVFKMCEKPSLTLSL---ADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEV----PSFYDQVHDSYILSVS  315 (524)
T ss_dssp             CSSSSSEEECCCSCSEEECC---TTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSS----CSEEEECSSSCEEEEE
T ss_pred             CccccccceeecCceEEEEc---CCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCC----ceEEeecccccEEEEE
Confidence            5321        11123333   568899999998 5 4899999999999999997643    222235699999999 


Q ss_pred             -EeccCC-CEEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          381 -AGMQQK-QIVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       381 -~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                       +|+|+| .+|++++.|++|++||++++++....   .....+.+++|+|++   ..+++++.|++|++||++++.+.. 
T Consensus       316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~---~~l~s~~~d~tv~lwd~~~~~~~~-  391 (524)
T 2j04_B          316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI---YSYIYSDGASSLRAVPSRAAFAVH-  391 (524)
T ss_dssp             EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT---TEEEEECSSSEEEEEETTCTTCCE-
T ss_pred             EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc---CeEEEeCCCCcEEEEECcccccce-
Confidence             578888 89999999999999999987764432   222346788999976   579999999999999999876533 


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-----cccceeEEEEcCCCCEE
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-----HQKRVFKAVWHYSHPLL  526 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----h~~~i~~l~~s~~~~~l  526 (540)
                            .+.+|.+.|++++|+|+|++|++|+.||+|++||+..   ..+..+..     +...|++++|+|+|..+
T Consensus       392 ------~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~---~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~  458 (524)
T 2j04_B          392 ------PLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR---RLLHGIKNSSATQKSLRLWKWDYSIKDDKY  458 (524)
T ss_dssp             ------EEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS---STTTCC------CCCCEEEECBCCSSSCEE
T ss_pred             ------eeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH---hhccccccCccceeeeEEEEeccCCCCCeE
Confidence                  3457999999999999999999999999999999874   33333321     12257899999999855

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=262.11  Aligned_cols=281  Identities=16%  Similarity=0.158  Sum_probs=229.4

Q ss_pred             CeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhccc
Q 009203          147 SSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSL  221 (540)
Q Consensus       147 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~  221 (540)
                      ....+.+|...|.++.+ +..                               ..+++++.|+.|++|+..     ..+.+
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~-------------------------------~~l~s~~~dg~v~vw~~~~~~~~~~~~~   57 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDD-------------------------------SKVASVSRDGTVRLWSKDDQWLGTVVYT   57 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EET-------------------------------TEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred             HHHHhhCCCCCcEEEEe-cCC-------------------------------CEEEEEEcCCcEEEEECCCCEEEEEeec
Confidence            45667899999999988 542                               247788899999999764     45789


Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      |.+.|++++|+|+ +.+|++|+.||.|++|++............     .+|...|.+++|  ++++|+++    +.|+.
T Consensus        58 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~--~~~~l~~~----~~d~~  125 (313)
T 3odt_A           58 GQGFLNSVCYDSE-KELLLFGGKDTMINGVPLFATSGEDPLYTL-----IGHQGNVCSLSF--QDGVVISG----SWDKT  125 (313)
T ss_dssp             CSSCEEEEEEETT-TTEEEEEETTSCEEEEETTCCTTSCC-CEE-----CCCSSCEEEEEE--ETTEEEEE----ETTSE
T ss_pred             CCccEEEEEECCC-CCEEEEecCCCeEEEEEeeecCCCCcccch-----hhcccCEEEEEe--cCCEEEEE----eCCCC
Confidence            9999999999995 999999999999999999775422211111     578999999999  57799999    99999


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      |++||.  +   .....+..   |...+.+++|.|.++.++++++.||.|++||....      .......|...+.+++
T Consensus       126 i~~~d~--~---~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~i~~~~  191 (313)
T 3odt_A          126 AKVWKE--G---SLVYNLQA---HNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV------IKTFSGIHNDVVRHLA  191 (313)
T ss_dssp             EEEEET--T---EEEEEEEC---CSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE------EEEECSSCSSCEEEEE
T ss_pred             EEEEcC--C---cEEEeccc---CCCceeEEEEccCCCCEEEEEECCCCEEEEecCce------EEEEeccCcccEEEEE
Confidence            999992  2   44555554   56789999998878999999999999999994332      1222233889999999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      |+|++. +++++.||.|++||+++++.+.... +...+.++.|+|++    .+++++.||.|++||+.+++...      
T Consensus       192 ~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~----~l~~~~~dg~v~iwd~~~~~~~~------  260 (313)
T 3odt_A          192 VVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG----DIVSCGEDRTVRIWSKENGSLKQ------  260 (313)
T ss_dssp             EEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS----CEEEEETTSEEEEECTTTCCEEE------
T ss_pred             EcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC----CEEEEecCCEEEEEECCCCceeE------
Confidence            999988 8999999999999999998877654 56788999999987    48899999999999999887543      


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                       .+..|...|.+++|+|+++ +++++.||.|++||+.+
T Consensus       261 -~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          261 -VITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             -EEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred             -EEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence             3356778999999999998 56788999999999997

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=283.85  Aligned_cols=314  Identities=7%  Similarity=0.036  Sum_probs=241.7

Q ss_pred             ceeeEEEEcccccccC--CCCccEEEEeecCCCceEEecccccccceEEecCC--CCeEEEeccc--hhcc-cccCceEE
Q 009203          156 HSIGIVKVKGEKSHRN--SSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSAS--PATIHCHTSN--HVSS-LHKRKLRS  228 (540)
Q Consensus       156 ~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--d~~i~~~~~~--~~~~-~h~~~V~~  228 (540)
                      ..|.++++.|.....+  ++|.++.+   .....  .+.+|...|..+++.++  ++++.+|++.  .++. +|...|++
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~d---~~~~~--~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~   90 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIGQ---PKYAK--DINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV   90 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEEE---ECCCS--CCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCceeec---ccccc--eecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE
Confidence            4677889999987776  77777772   11122  22699999999999875  3444455544  3444 77899999


Q ss_pred             EEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC-----CCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          229 LSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR-----RWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       229 l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ++|||| |.+||+++.||.|+|||...  +...+        . |.     ..|.+++|||||++|++|    +.||+|+
T Consensus        91 vawSPd-G~~LAs~s~dg~V~iwd~~~--~l~~l--------~-~~~~~~~~sv~svafSPDG~~LAsg----s~DGtVk  154 (588)
T 2j04_A           91 CKPSPI-DDWMAVLSNNGNVSVFKDNK--MLTNL--------D-SKGNLSSRTYHCFEWNPIESSIVVG----NEDGELQ  154 (588)
T ss_dssp             EEECSS-SSCEEEEETTSCEEEEETTE--EEEEC--------C-CSSCSTTTCEEEEEECSSSSCEEEE----ETTSEEE
T ss_pred             EEECCC-CCEEEEEeCCCcEEEEeCCc--eeeec--------c-CCCccccccEEEEEEcCCCCEEEEE----cCCCEEE
Confidence            999996 99999999999999999543  22222        2 33     359999999999999999    9999999


Q ss_pred             EEecCCCCCce----eEEeecC-CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          304 VLNLNKTKGRA----CVTFLDD-KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       304 vwd~~~~~~~~----~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      +||+.++....    .+..+.. ...|.+.|.+++|+| ++  +++++.|++|++||+.++........+. .+|...|.
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~  230 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKIT  230 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCC
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEE
Confidence            99999763211    2444421 123678999999999 88  8888999999999998876311011221 35889999


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCe-eeeeccCccEEEEee--cCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DFKHQIESKCMSVLP--NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      +++|+  |+.|++++ ++.|++||+.+++. .....+...+..+.+  +|++   ..+++++.+|+ ++|...       
T Consensus       231 svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~---~~La~a~edG~-klw~~d-------  296 (588)
T 2j04_A          231 DLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKES---TILLMSNKTSY-KVLLED-------  296 (588)
T ss_dssp             CEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSC---EEEEECSSCEE-EEEESS-------
T ss_pred             EEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCC---CEEEEEcCCCC-EEEeec-------
Confidence            99999  68888887 69999999998887 445567788888999  7776   79999999999 999876       


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                                      .++|+||+..+++.  |+++++|+...   ..+..+.+ ...|++++|+|||+.+|+++
T Consensus       297 ----------------~~~~spd~~l~a~~--d~~v~lW~~~g---~~l~~~~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          297 ----------------ELHVTADNIIAPYL--EKKFKKWSTIW---NEFNNYET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             ----------------SEEEECCCSSHHHH--HHHHHHTTTTT---TSSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred             ----------------cEEECCCceEEEEc--CCEEEEEECCC---Cceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence                            15699999888875  99999999873   44556655 77899999999999999886

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=261.57  Aligned_cols=267  Identities=18%  Similarity=0.230  Sum_probs=216.2

Q ss_pred             EEecCCCCeEEEeccc-----hh--cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HV--SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~--~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      ++.+ .|++|++|+..     ++  +.+|...|++|+|+|+ +++|++|+.||+|+||++.+++.+..+        .+|
T Consensus        39 lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~~~--------~~h  108 (318)
T 4ggc_A           39 LAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNM--------TSH  108 (318)
T ss_dssp             EEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE--------ECC
T ss_pred             EEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeEEEe--------cCc
Confidence            4443 48999999764     23  3578889999999995 999999999999999999998876665        477


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      ...+.++.  +++..|+++    +.++.+.+|+....  ...+..+.+   |...+..+.|.+ ++.+|++++.|+.|++
T Consensus       109 ~~~~~~~~--~~~~~l~s~----~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~-~~~~l~s~~~d~~i~i  176 (318)
T 4ggc_A          109 SARVGSLS--WNSYILSSG----SRSGHIHHHDVRVA--EHHVATLSG---HSQEVCGLRWAP-DGRHLASGGNDNLVNV  176 (318)
T ss_dssp             SSCEEEEE--EETTEEEEE----ETTSEEEEEETTSS--SCEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred             cceEEEee--cCCCEEEEE----ecCCceEeeecCCC--ceeEEEEcC---ccCceEEEEEcC-CCCEEEEEecCcceeE
Confidence            77776554  456799999    99999999999876  344555554   567899999999 9999999999999999


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCCEE---EEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV---LSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (540)
                      ||+++++...... .....+.+.|.+++++|++..+   ++++.++.|++||...............+..+.+.|.+.. 
T Consensus       177 wd~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-  254 (318)
T 4ggc_A          177 WPSAPGEGGWVPL-QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE-  254 (318)
T ss_dssp             EESSCBTTBSCCS-EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTE-
T ss_pred             EECCCCcccccce-eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccc-
Confidence            9999876432222 2234578899999999876543   3566789999999999888888888888889999987732 


Q ss_pred             eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .++++|+.|+.|++||+.+++...       .+.+|...|++++|+|+|++|++|+.||+|+|||+..
T Consensus       255 ~~~~sg~~d~~i~iwd~~~~~~~~-------~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          255 LISGHGFAQNQLVIWKYPTMAKVA-------ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEEEECTTTCCEEEEETTTCCEEE-------EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             eEEEEEcCCCEEEEEECCCCcEEE-------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            233445689999999999887543       4578999999999999999999999999999999975

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-33  Score=280.33  Aligned_cols=301  Identities=11%  Similarity=0.117  Sum_probs=227.7

Q ss_pred             CCeeee-cCCcceeeEEEEcc-cccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccch------
Q 009203          146 GSSTQA-SPAAHSIGIVKVKG-EKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNH------  217 (540)
Q Consensus       146 ~~~~~~-~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~~------  217 (540)
                      ..+..+ .+|...|.++++.| ...                               .+++++.|++|++|+...      
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~-------------------------------~l~s~s~dg~v~vwd~~~~~~~~~  101 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETP-------------------------------YLITGSDQGVIKIWNLKEIIVGEV  101 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSC-------------------------------EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred             eEEeeeccCCCCceEEEEECCCCCC-------------------------------EEEEecCCceEEEeECcccccCcc
Confidence            345566 78999999999998 532                               578889999999997642      


Q ss_pred             ---hcc-cccCceEEEEEecCCCcEEEEEeCCceEEEEEcC---CCCCcceeecc----cccCCCCCCCCceeEE--Eec
Q 009203          218 ---VSS-LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQ---SRGSGASLLST----TDCLSPKHRRWPEDIA--WHP  284 (540)
Q Consensus       218 ---~~~-~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~---~~~~~~~~~~~----~~~~~~~h~~~V~~~~--~~~  284 (540)
                         .+. +|.+.|++++|+|+ +.+|++|+.||.|++||+.   .++........    ......++...+.++.  +++
T Consensus       102 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  180 (437)
T 3gre_A          102 YSSSLTYDCSSTVTQITMIPN-FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE  180 (437)
T ss_dssp             CSCSEEEECSSCEEEEEECTT-SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred             cceeeeccCCCCEEEEEEeCC-CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence               222 79999999999995 8999999999999999995   44433222111    0000012567788888  568


Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK  364 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  364 (540)
                      ++.+|+++    +.|+.|++||+.++   ..+..+.... |.+.|.+++|+| ++.+|++|+.||.|++||+++++.   
T Consensus       181 ~~~~l~~~----~~d~~i~iwd~~~~---~~~~~~~~~~-h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~---  248 (437)
T 3gre_A          181 EKSLLVAL----TNLSRVIIFDIRTL---ERLQIIENSP-RHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVL---  248 (437)
T ss_dssp             SCEEEEEE----ETTSEEEEEETTTC---CEEEEEECCG-GGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEE---
T ss_pred             CCCEEEEE----eCCCeEEEEeCCCC---eeeEEEccCC-CCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccE---
Confidence            89999999    99999999999986   4566665422 567899999999 999999999999999999998764   


Q ss_pred             cceeecccCCcceeEEEec----cCCCEEEEEeCCCeEEEEECCCCCeeeeec---------------------------
Q 009203          365 PKALHRNLHSSAVMGVAGM----QQKQIVLSAGADKRIIGFDAGVGRADFKHQ---------------------------  413 (540)
Q Consensus       365 ~~~~~~~~~~~~v~~l~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------  413 (540)
                      ...+ ...|...|.+++|+    +++.+|++++.||.|++||+++++.+....                           
T Consensus       249 ~~~~-~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  327 (437)
T 3gre_A          249 IRSW-SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR  327 (437)
T ss_dssp             EEEE-BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred             EEEE-ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence            2222 12577899999554    568899999999999999999887654432                           


Q ss_pred             cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc------------------------------ccc
Q 009203          414 IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK------------------------------QES  463 (540)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~------------------------------~~~  463 (540)
                      ....+.++.|+ ++   .+|++|+.|+.|++||+.+++......++.                              ...
T Consensus       328 ~~~~v~~l~~~-~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (437)
T 3gre_A          328 SLNALSTISVS-ND---KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS  403 (437)
T ss_dssp             SGGGGCCEEEE-TT---EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred             cCCceEEEEEC-Cc---eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence            23346677777 33   699999999999999999877544332210                              112


Q ss_pred             CccccCeEEEEEcCC--CCEEEEEeCCCcEEEEe
Q 009203          464 SESQSALINQSWSPD--GLYITSGSADPVIHLFD  495 (540)
Q Consensus       464 ~~~~~~v~~~~~sp~--g~~l~sg~~dg~i~iwd  495 (540)
                      ..|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            348999999999998  78999999999999995

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.8e-33  Score=277.94  Aligned_cols=279  Identities=15%  Similarity=0.194  Sum_probs=217.5

Q ss_pred             ccceEEecCCCCeEEEeccc---------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccc
Q 009203          197 LIPLVRTSASPATIHCHTSN---------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD  267 (540)
Q Consensus       197 ~v~~~~~~~~d~~i~~~~~~---------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~  267 (540)
                      +...+++++.|+.|++|+..         ..+.+|.+.|++++|+|+++.+|++|+.||+|+|||+.++...........
T Consensus        46 ~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~  125 (402)
T 2aq5_A           46 FMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI  125 (402)
T ss_dssp             EEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSE
T ss_pred             eEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceE
Confidence            33456667889999999753         247899999999999994489999999999999999998743211111000


Q ss_pred             cCCCCCCCCceeEEEecCC-CeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe
Q 009203          268 CLSPKHRRWPEDIAWHPQG-NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG  346 (540)
Q Consensus       268 ~~~~~h~~~V~~~~~~~~~-~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  346 (540)
                      . ..+|...|.+++|+|++ .+|+++    +.|+.|++||+.++   ..+..+.. ..|.+.|.+++|+| ++.+|++++
T Consensus       126 ~-~~~h~~~v~~~~~~p~~~~~l~s~----~~dg~i~iwd~~~~---~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~  195 (402)
T 2aq5_A          126 T-LEGHTKRVGIVAWHPTAQNVLLSA----GCDNVILVWDVGTG---AAVLTLGP-DVHPDTIYSVDWSR-DGALICTSC  195 (402)
T ss_dssp             E-EECCSSCEEEEEECSSBTTEEEEE----ETTSCEEEEETTTT---EEEEEECT-TTCCSCEEEEEECT-TSSCEEEEE
T ss_pred             E-ecCCCCeEEEEEECcCCCCEEEEE----cCCCEEEEEECCCC---CccEEEec-CCCCCceEEEEECC-CCCEEEEEe
Confidence            0 15899999999999998 699999    99999999999976   55555521 13677899999999 999999999


Q ss_pred             cCCcEEEEecCCCCCccccceeecccCCcc-eeEEEeccCCCEEEEE---eCCCeEEEEECCCCCe---eeeeccCccEE
Q 009203          347 SDHAVVLWSERDAEDSWKPKALHRNLHSSA-VMGVAGMQQKQIVLSA---GADKRIIGFDAGVGRA---DFKHQIESKCM  419 (540)
Q Consensus       347 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~~~---~~dg~i~iwd~~~~~~---~~~~~~~~~~~  419 (540)
                      .||.|++||+++++.   ...+ ...|.+. +.++.|+|++.+|++|   +.|+.|++||++++..   .........+.
T Consensus       196 ~d~~i~iwd~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~  271 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTV---VAEK-DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL  271 (402)
T ss_dssp             TTSEEEEEETTTTEE---EEEE-ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred             cCCcEEEEeCCCCce---eeee-ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence            999999999998774   2222 1346655 8999999999999999   7899999999998665   22334567788


Q ss_pred             EEeecCCCCCceEE-EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          420 SVLPNPCDFNLFMV-QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       420 ~~~~~~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ++.|+|++   .++ ++|+.||.|++||+.+++.....+.   .. .|...|.+++|+|++.++++  .++.+++|++.+
T Consensus       272 ~~~~s~~~---~~l~~~g~~dg~i~i~d~~~~~~~~~~l~---~~-~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          272 LPFFDPDT---NIVYLCGKGDSSIRYFEITSEAPFLHYLS---MF-SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             EEEEETTT---TEEEEEETTCSCEEEEEECSSTTCEEEEE---EE-CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             EEEEcCCC---CEEEEEEcCCCeEEEEEecCCCcceEeec---cc-ccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence            99999987   455 5677899999999998774232221   11 25688999999999998875  466999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.8e-32  Score=271.64  Aligned_cols=254  Identities=16%  Similarity=0.262  Sum_probs=204.7

Q ss_pred             CCCCCCceeEEEecC-CCeEEEEeecCCCCCeEEEEecCCC-------CCceeEEeecCCCCcccceeEEEEeCCCCC-E
Q 009203          271 PKHRRWPEDIAWHPQ-GNSLFSAHTADSGDSQISVLNLNKT-------KGRACVTFLDDKPHVKGIINSIIFLPWENP-C  341 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~-~~~l~s~~~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~  341 (540)
                      .+|.+.|++++|+|+ +.+|+++    +.+|.|++||+.+.       ........+..   |...|.+++|+| ++. +
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~----~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~-~~~~~  196 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATK----TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG---HQKEGYGLSWNP-NLNGY  196 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEE----CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC---CSSCCCCEEECT-TSTTE
T ss_pred             EcCCCcEEEEEECCCCCcEEEEE----CCCCcEEEEECCCcccccCccccCCCcEEecC---CCCCeEEEEeCC-CCCCe
Confidence            368899999999997 6789998    99999999999862       01133444443   677899999999 666 9


Q ss_pred             EEEEecCCcEEEEecCCCCCcccc--ceeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCC---Ceeeee-cc
Q 009203          342 FATGGSDHAVVLWSERDAEDSWKP--KALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVG---RADFKH-QI  414 (540)
Q Consensus       342 l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~  414 (540)
                      |++|+.||.|++||+..+......  .......|...|.+++|+| ++.+|++++.||.|++||++++   ..+... .+
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~  276 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH  276 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence            999999999999999884321111  0122246999999999999 7789999999999999999986   344333 55


Q ss_pred             CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEE
Q 009203          415 ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHL  493 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~i  493 (540)
                      ...+.++.|+|.+.  .++++|+.||.|++||+++......      .+..|...|++++|+|++. +|++++.||.|+|
T Consensus       277 ~~~v~~i~~~p~~~--~~l~tg~~dg~v~vwd~~~~~~~~~------~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          277 TAEVNCLSFNPYSE--FILATGSADKTVALWDLRNLKLKLH------SFESHKDEIFQVQWSPHNETILASSGTDRRLHV  348 (430)
T ss_dssp             SSCEEEEEECSSCT--TEEEEEETTSEEEEEETTCTTSCSE------EEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred             CCCeEEEEeCCCCC--CEEEEEeCCCeEEEEeCCCCCCCeE------EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence            67889999999774  3799999999999999998554333      3456889999999999985 6999999999999


Q ss_pred             EeccCCC------------CcccccccccccceeEEEEcCCCC-EEEEEEcCCcEEEEeC
Q 009203          494 FDIRYSA------------NKPSQSIRAHQKRVFKAVWHYSHP-LLISISSDLNIGLHKI  540 (540)
Q Consensus       494 wd~~~~~------------~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~v~iw~l  540 (540)
                      ||+....            ...+..+.+|...|++++|+|+++ +|++++.||.|+||++
T Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence            9998621            145566778999999999999999 9999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.7e-32  Score=257.60  Aligned_cols=250  Identities=17%  Similarity=0.192  Sum_probs=199.9

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhcc
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSS  220 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~  220 (540)
                      +..+.+|...|.++++.|...                               .+++++.|++|++|+..       ..+.
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~-------------------------------~las~s~D~~v~iw~~~~~~~~~~~~l~   50 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGK-------------------------------RMATCSSDKTIKIFEVEGETHKLIDTLT   50 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSS-------------------------------EEEEEETTSCEEEEEBCSSCBCCCEEEC
T ss_pred             ceeccCCcCceEEEEECCCCC-------------------------------EEEEEeCCCEEEEEecCCCCcEEEEEEc
Confidence            345678999999999988642                               57889999999999753       3578


Q ss_pred             cccCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCC--cceeecccccCCCCCCCCceeEEEecC--CCeEEEEeec
Q 009203          221 LHKRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGS--GASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTA  295 (540)
Q Consensus       221 ~h~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~  295 (540)
                      +|.+.|++++|+|+ .+.+|++|+.|++|+|||+.++..  ...+        .+|...|.+++|+|+  |.+|+++   
T Consensus        51 gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~--------~~h~~~v~~v~~~p~~~g~~l~s~---  119 (297)
T 2pm7_B           51 GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH--------AVHSASVNSVQWAPHEYGPMLLVA---  119 (297)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE--------CCCSSCEEEEEECCGGGCSEEEEE---
T ss_pred             cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe--------ecCCCceeEEEeCcCCCCcEEEEE---
Confidence            99999999999863 378999999999999999987642  2222        478999999999997  8899999   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-------------CCEEEEEecCCcEEEEecCCCCCc
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-------------NPCFATGGSDHAVVLWSERDAEDS  362 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-------------~~~l~s~~~dg~i~iwd~~~~~~~  362 (540)
                       +.|+.|++||+.++.... ...+.+   |...|.+++|+| +             +.+|++|+.|++|++||++++...
T Consensus       120 -s~d~~v~~wd~~~~~~~~-~~~~~~---h~~~v~~~~~~p-~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~  193 (297)
T 2pm7_B          120 -SSDGKVSVVEFKENGTTS-PIIIDA---HAIGVNSASWAP-ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT  193 (297)
T ss_dssp             -ETTSEEEEEEBCSSSCBC-CEEEEC---CSSCEEEEEECC-CC------------CCEEEEEETTSCEEEEEEETTTTE
T ss_pred             -ECCCcEEEEEecCCCcee-eeeeec---ccCccceEeecC-CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce
Confidence             999999999998653211 233343   567899999999 5             579999999999999999876531


Q ss_pred             cccceeecccCCcceeEEEeccCC---CEEEEEeCCCeEEEEECCCCCe---eee---eccCccEEEEeecCCCCCceEE
Q 009203          363 WKPKALHRNLHSSAVMGVAGMQQK---QIVLSAGADKRIIGFDAGVGRA---DFK---HQIESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       363 ~~~~~~~~~~~~~~v~~l~~s~~~---~~l~~~~~dg~i~iwd~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~l  433 (540)
                      .. ......+|...|.+++|+|++   .+|++++.|++|++||++.+..   ...   ......+.++.|+|++   .+|
T Consensus       194 ~~-~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l  269 (297)
T 2pm7_B          194 YV-LESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG---NVL  269 (297)
T ss_dssp             EE-EEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS---CCE
T ss_pred             EE-EEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC---CEE
Confidence            11 112235799999999999984   8999999999999999987431   111   2345778899999987   689


Q ss_pred             EEEcCCCeEEEEECCC
Q 009203          434 QTGTPGRQLRLYDIRL  449 (540)
Q Consensus       434 ~~~~~dg~v~i~d~~~  449 (540)
                      ++++.|+.|++|+...
T Consensus       270 as~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          270 ALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEETTSCEEEEEECT
T ss_pred             EEEcCCCcEEEEEECC
Confidence            9999999999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-33  Score=297.16  Aligned_cols=256  Identities=15%  Similarity=0.205  Sum_probs=198.6

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecC--CCeEEEE
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSA  292 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~  292 (540)
                      .++.||.+.|++++|+|+ +.+|++|+.||.|+|||+..+.  ....+        .+|...|++++|+++  +++|+++
T Consensus         3 ~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l--------~~h~~~V~~l~~s~~~~~~~l~s~   73 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTL--------TGHEGPVWRVDWAHPKFGTILASC   73 (753)
T ss_dssp             -----CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEE--------CCCSSCEEEEEECCTTSCSEEEEE
T ss_pred             eecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceec--------cCCcCceEEEEecCCCCCCEEEEE
Confidence            357899999999999996 8899999999999999997432  22222        589999999999988  9999999


Q ss_pred             eecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC--CCEEEEEecCCcEEEEecCCCCCccccceeec
Q 009203          293 HTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE--NPCFATGGSDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       293 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                          +.||.|++||+.++.. .....+..   |...|.+++|+| +  +.++++|+.||.|++||++++..   ......
T Consensus        74 ----s~Dg~I~vwd~~~~~~-~~~~~~~~---h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~---~~~~~~  141 (753)
T 3jro_A           74 ----SYDGKVLIWKEENGRW-SQIAVHAV---HSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGT---TSPIII  141 (753)
T ss_dssp             ----ETTSCEEEEEEETTEE-EEEEEECC---CSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSC---CCCEEE
T ss_pred             ----eCCCeEEEEECCCCcc-cccccccC---CCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCC---cceeEe
Confidence                9999999999997621 23444443   678899999999 7  99999999999999999998754   223333


Q ss_pred             ccCCcceeEEEeccC-------------CCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc
Q 009203          371 NLHSSAVMGVAGMQQ-------------KQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      .+|...|.+++|+|.             +.++++|+.||.|++||++                                 
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~---------------------------------  188 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN---------------------------------  188 (753)
T ss_dssp             ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE---------------------------------
T ss_pred             ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc---------------------------------
Confidence            568999999999984             4555555555555555544                                 


Q ss_pred             CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC---CCEEEEEeCCCcEEEEeccCCCCc---ccccccccc
Q 009203          438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD---GLYITSGSADPVIHLFDIRYSANK---PSQSIRAHQ  511 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~sg~~dg~i~iwd~~~~~~~---~~~~~~~h~  511 (540)
                                 +.......   ...+.+|...|++++|+|+   +.+|++|+.||.|++||+......   .+.....|.
T Consensus       189 -----------~~~~~~~~---~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  254 (753)
T 3jro_A          189 -----------SDAQTYVL---ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP  254 (753)
T ss_dssp             -----------TTTTEEEE---EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCS
T ss_pred             -----------CCccccee---eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCC
Confidence                       33211111   1134578889999999999   899999999999999999974222   333445688


Q ss_pred             cceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          512 KRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       512 ~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +.|++++|+|+|++|++|+.||.|++|++
T Consensus       255 ~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          255 DVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             SCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             CceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            89999999999999999999999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-32  Score=270.47  Aligned_cols=298  Identities=11%  Similarity=0.043  Sum_probs=223.6

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC---Ccceeecccc---------------------------------
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG---SGASLLSTTD---------------------------------  267 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~---~~~~~~~~~~---------------------------------  267 (540)
                      .+|.+++|+|| |++|++++ ++.|++||+.+++   .+..+.....                                 
T Consensus         5 ~p~~~v~~s~d-g~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRD-GSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSS-SSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCC-CCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            58999999996 77666664 7799999999887   4433331110                                 


Q ss_pred             -------------cCCCCCCCCceeEEEecCCCeE-EEEeecCCCCCeEEEEecC--CCCCceeEEeecCCCCcccceeE
Q 009203          268 -------------CLSPKHRRWPEDIAWHPQGNSL-FSAHTADSGDSQISVLNLN--KTKGRACVTFLDDKPHVKGIINS  331 (540)
Q Consensus       268 -------------~~~~~h~~~V~~~~~~~~~~~l-~s~~~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~v~~  331 (540)
                                   ...++|...|.+++|+|++++| +++    +.|+.|++||+.  ++.   .+..+..+ .+...|.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----~~dg~v~iwd~~~~~~~---~~~~~~~~-~~~~~v~~  154 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACA----DSDKSLLVFDVDKTSKN---VLKLRKRF-CFSKRPNA  154 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEE----GGGTEEEEEEECSSSSS---CEEEEEEE-ECSSCEEE
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEE----CCCCeEEEEECcCCCCc---eeeeeecc-cCCCCceE
Confidence                         0012566789999999999996 888    899999999998  653   34444321 13567999


Q ss_pred             EEEeCCCCCEEEEEecCCcEEEEecCCCCCcc-ccceeecccCCcceeEEEeccC---CCEEEEEeCCCeEEEEECCCCC
Q 009203          332 IIFLPWENPCFATGGSDHAVVLWSERDAEDSW-KPKALHRNLHSSAVMGVAGMQQ---KQIVLSAGADKRIIGFDAGVGR  407 (540)
Q Consensus       332 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~~~dg~i~iwd~~~~~  407 (540)
                      ++|+| ++.+|++|+.||.|++|++.++.... ....+  .+|...|++++|+|+   +.+|++++.|+.|++||++++.
T Consensus       155 ~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~  231 (450)
T 2vdu_B          155 ISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPI--LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF  231 (450)
T ss_dssp             EEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCS--EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred             EEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceee--ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence            99999 99999999999999999998876422 11122  458999999999999   9999999999999999999888


Q ss_pred             eeeee--ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc--c----------------ccCccc
Q 009203          408 ADFKH--QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK--Q----------------ESSESQ  467 (540)
Q Consensus       408 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~--~----------------~~~~~~  467 (540)
                      .+...  .+...+.++.|+ ++   .+|++++.|+.|++||+.+++.........  .                ......
T Consensus       232 ~~~~~~~~h~~~v~~~~~s-d~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          232 IVDKWLFGHKHFVSSICCG-KD---YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             CEEEECCCCSSCEEEEEEC-ST---TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             eeeeeecCCCCceEEEEEC-CC---CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence            76552  456788999999 65   699999999999999999887533221000  0                001234


Q ss_pred             cCeEEEEEcCCCCEEEEEe-CCCcEEEEec--cCC-CCcccccccccccceeEEEEcCCCCEEEEE-Ec------CCcEE
Q 009203          468 SALINQSWSPDGLYITSGS-ADPVIHLFDI--RYS-ANKPSQSIRAHQKRVFKAVWHYSHPLLISI-SS------DLNIG  536 (540)
Q Consensus       468 ~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~--~~~-~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~-~~------dg~v~  536 (540)
                      ..|.+++|+|++++|++++ .|+.|+||++  ... ....+..+..| +.|.+++|+|++ +++++ +.      +..|.
T Consensus       308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~  385 (450)
T 2vdu_B          308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAK  385 (450)
T ss_dssp             CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEE
T ss_pred             EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceE
Confidence            5799999999999999998 8999999999  331 01556677777 789999999964 44444 32      45588


Q ss_pred             EEeC
Q 009203          537 LHKI  540 (540)
Q Consensus       537 iw~l  540 (540)
                      +|.+
T Consensus       386 v~~~  389 (450)
T 2vdu_B          386 FIEY  389 (450)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8863

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.6e-32  Score=270.22  Aligned_cols=298  Identities=16%  Similarity=0.226  Sum_probs=220.9

Q ss_pred             CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------------
Q 009203          153 PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------------  216 (540)
Q Consensus       153 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------------  216 (540)
                      .|...|.++++.|...                               .+++++.|+.|++|+..                
T Consensus        26 ~~~~~V~~v~~s~~g~-------------------------------~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~   74 (447)
T 3dw8_B           26 AEADIISTVEFNHSGE-------------------------------LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVY   74 (447)
T ss_dssp             CGGGSEEEEEECSSSS-------------------------------EEEEEETTSEEEEEEECC-----CCCCCCEEEE
T ss_pred             cccCcEEEEEECCCCC-------------------------------EEEEEcCCCeEEEEEecCCCCCCcccccceeEe
Confidence            4667899999988742                               57788889999999643                


Q ss_pred             hhccccc------------CceEEEEEecCCC--cEEEEEeCCceEEEEEcCCCCCcceeec------------------
Q 009203          217 HVSSLHK------------RKLRSLSLNPVNE--QLFVTSALDGVIRLWQLQSRGSGASLLS------------------  264 (540)
Q Consensus       217 ~~~~~h~------------~~V~~l~~spd~~--~~l~tg~~dg~v~iw~~~~~~~~~~~~~------------------  264 (540)
                      ..+.+|.            +.|++++|+|+ +  .+|++|+.|++|++||+..+........                  
T Consensus        75 ~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~-~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  153 (447)
T 3dw8_B           75 STFQSHEPEFDYLKSLEIEEKINKIRWLPQ-KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR  153 (447)
T ss_dssp             EEEECCCCEEEGGGTEEECCCCCEEEECCC-CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred             cccccccccccccccccccCceEEEEEcCC-CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence            2477998            88999999996 6  7999999999999999976432100000                  


Q ss_pred             --------------ccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeec----CCCCcc
Q 009203          265 --------------TTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLD----DKPHVK  326 (540)
Q Consensus       265 --------------~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~  326 (540)
                                    .......+|...|.+++|+|++++|+++     .|+.|++||+.+.  ...+..+.    ....|.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~  226 (447)
T 3dw8_B          154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-----DDLRINLWHLEIT--DRSFNIVDIKPANMEELT  226 (447)
T ss_dssp             CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-----CSSEEEEEETTEE--EEEEEEEECCCSSGGGCC
T ss_pred             eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-----CCCeEEEEECCCC--CceeeeeecccccccccC
Confidence                          0001125899999999999999999997     4999999999853  23343221    111367


Q ss_pred             cceeEEEEeCCCC-CEEEEEecCCcEEEEecCCCCCccccceeecccCCc------------ceeEEEeccCCCEEEEEe
Q 009203          327 GIINSIIFLPWEN-PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS------------AVMGVAGMQQKQIVLSAG  393 (540)
Q Consensus       327 ~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~v~~l~~s~~~~~l~~~~  393 (540)
                      ..|.+++|+| ++ .+|++|+.||.|++||++++...... ......|..            .|.+++|+|+|++|++++
T Consensus       227 ~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  304 (447)
T 3dw8_B          227 EVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDRH-SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD  304 (447)
T ss_dssp             CCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCTT-CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred             cceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccce-eeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence            8899999999 76 99999999999999999987741111 111233554            899999999999999999


Q ss_pred             CCCeEEEEECCC-CCeeeeeccCcc----------------EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          394 ADKRIIGFDAGV-GRADFKHQIESK----------------CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       394 ~dg~i~iwd~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      . +.|++||+++ ++++........                +..+.|+|++   .+|++|+.||.|++||+.+++.....
T Consensus       305 ~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~  380 (447)
T 3dw8_B          305 Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD---SVVMTGSYNNFFRMFDRNTKRDITLE  380 (447)
T ss_dssp             S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS---SEEEEECSTTEEEEEETTTCCEEEEE
T ss_pred             C-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC---CEEEEeccCCEEEEEEcCCCcceeee
Confidence            9 9999999997 666555443332                2348899987   68999999999999999987643211


Q ss_pred             eccc--------------------------cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          457 FGWK--------------------------QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       457 ~~~~--------------------------~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      . ..                          .....+...|..++|+|+|++||+++.++ +++|...
T Consensus       381 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          381 A-SRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             C-CSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             e-cccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            0 00                          00113456789999999999999998776 8888654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.8e-31  Score=258.63  Aligned_cols=276  Identities=12%  Similarity=0.096  Sum_probs=203.9

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +.+|.+.|++++|+|| +.+|++|+.++ ++||++.........          +...+..++|.++++.++..   ++.
T Consensus        15 ~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~---~~~   79 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNVHPVAHIMSQ----------EMRHLSKVRMLHRTNYVAFV---TGV   79 (355)
T ss_dssp             ----CCCCCEEEECTT-SSEEEEECSSE-EEEEEETTEEEEEEE----------ECSCCCEEEECTTSSEEEEE---CSS
T ss_pred             cccCCCceEEEEECCC-CCEEEEEcCCE-EEEEecCCcceeeee----------ecCCeEEEEEcCCCCEEEEE---ECC
Confidence            4789999999999996 89999998775 789998865433222          11247789999998887543   177


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC-CCccccceeecccCCcce
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA-EDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v  377 (540)
                      |+.|++||+.++   ..+..+.    +...|.+++|++ +  .++++ .|+.|++||+.++ +.+.   .+..     ..
T Consensus        80 d~~v~iWd~~~~---~~~~~~~----~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~---~~~~-----~~  140 (355)
T 3vu4_A           80 KEVVHIWDDVKK---QDVSRIK----VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRIT---DDIR-----FG  140 (355)
T ss_dssp             TTEEEEEETTTT---EEEEEEE----CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSS---CCEE-----EE
T ss_pred             ccEEEEEECCCC---cEEEEEE----CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeE---Eecc-----CC
Confidence            899999999986   4455554    245799999987 4  45444 4789999999987 4422   2211     34


Q ss_pred             eEEEeccCCCEEEE--EeCCCeEEEEECCCCC-----------------eeeeeccCccEEEEeecCCCCCceEEEEEcC
Q 009203          378 MGVAGMQQKQIVLS--AGADKRIIGFDAGVGR-----------------ADFKHQIESKCMSVLPNPCDFNLFMVQTGTP  438 (540)
Q Consensus       378 ~~l~~s~~~~~l~~--~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  438 (540)
                      ..+++++  .++++  |+.||.|++||+.++.                 ......+...+.++.|+|++   .+|++|+.
T Consensus       141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g---~~l~s~s~  215 (355)
T 3vu4_A          141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS---DMVATCSQ  215 (355)
T ss_dssp             EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS---SEEEEEET
T ss_pred             ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC---CEEEEEeC
Confidence            4556666  56665  5789999999999865                 22334556789999999987   79999999


Q ss_pred             CCe-EEEEECCCCcceeeeeccccccC-c-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc------
Q 009203          439 GRQ-LRLYDIRLRQTEIHAFGWKQESS-E-SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA------  509 (540)
Q Consensus       439 dg~-v~i~d~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~------  509 (540)
                      |++ |++||+++++....       +. + |...|++++|+|+|++|++++.|+.|+|||+..........+..      
T Consensus       216 d~~~v~iwd~~~~~~~~~-------~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~  288 (355)
T 3vu4_A          216 DGTIIRVFKTEDGVLVRE-------FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY  288 (355)
T ss_dssp             TCSEEEEEETTTCCEEEE-------EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred             CCCEEEEEECCCCcEEEE-------EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence            998 99999998875442       23 4 88899999999999999999999999999998632222221111      


Q ss_pred             ---------------cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          510 ---------------HQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       510 ---------------h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                                     +......++|+++|++|++++.||.+++|++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          289 FQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             CCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             cccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                           1223477999999999999999999999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.1e-32  Score=259.58  Aligned_cols=250  Identities=15%  Similarity=0.180  Sum_probs=192.9

Q ss_pred             eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhcccc
Q 009203          150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSSLH  222 (540)
Q Consensus       150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~~h  222 (540)
                      .+.+|...|.++++.|...                               .+++++.|++|++|+..       ..+.+|
T Consensus         8 ~~~~H~~~V~~v~~s~~g~-------------------------------~lasgs~D~~v~lwd~~~~~~~~~~~l~gH   56 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGT-------------------------------RLATCSSDRSVKIFDVRNGGQILIADLRGH   56 (316)
T ss_dssp             ------CCEEEEEECGGGC-------------------------------EEEEEETTTEEEEEEEETTEEEEEEEEECC
T ss_pred             ecccccCeEEEeeEcCCCC-------------------------------EEEEEeCCCeEEEEEecCCCcEEEEEEcCC
Confidence            3458999999999988642                               58889999999999753       347899


Q ss_pred             cCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC--CCeEEEEeecCCCC
Q 009203          223 KRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTADSGD  299 (540)
Q Consensus       223 ~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~~~~d  299 (540)
                      .+.|++++|+|+ .+.+|++|+.|++|+|||+.++.......  .    .+|...|.+++|+|+  +.+|+++    +.|
T Consensus        57 ~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~--~----~~h~~~V~~v~~~p~~~g~~lasg----s~D  126 (316)
T 3bg1_A           57 EGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE--H----AGHDSSVNSVCWAPHDYGLILACG----SSD  126 (316)
T ss_dssp             SSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE--E----CCCSSCCCEEEECCTTTCSCEEEE----CSS
T ss_pred             CccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE--c----cCCCCceEEEEECCCCCCcEEEEE----cCC
Confidence            999999999862 37899999999999999998764221111  1    589999999999998  7899999    999


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC-----------------CCEEEEEecCCcEEEEecCCCCCc
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE-----------------NPCFATGGSDHAVVLWSERDAEDS  362 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----------------~~~l~s~~~dg~i~iwd~~~~~~~  362 (540)
                      +.|++||+..+........+.   .|...|.+++|+| +                 +.+|++|+.|++|++||++.....
T Consensus       127 ~~i~lwd~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~  202 (316)
T 3bg1_A          127 GAISLLTYTGEGQWEVKKINN---AHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW  202 (316)
T ss_dssp             SCEEEEEECSSSCEEECCBTT---SSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred             CCEEEEecCCCCCcceeeeec---cccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence            999999998652211122222   4677899999999 5                 468999999999999999754310


Q ss_pred             cccceeecccCCcceeEEEeccCC----CEEEEEeCCCeEEEEECCCCC-----eeeeeccCccEEEEeecCCCCCceEE
Q 009203          363 WKPKALHRNLHSSAVMGVAGMQQK----QIVLSAGADKRIIGFDAGVGR-----ADFKHQIESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       363 ~~~~~~~~~~~~~~v~~l~~s~~~----~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l  433 (540)
                      .  ......+|...|.+++|+|++    .+|++++.|++|++||+....     ......+...+.+++|+|++   .+|
T Consensus       203 ~--~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---~~l  277 (316)
T 3bg1_A          203 K--EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA---NIL  277 (316)
T ss_dssp             E--EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT---CCE
T ss_pred             c--eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC---CEE
Confidence            0  112235699999999999986    889999999999999997631     11223456788999999988   689


Q ss_pred             EEEcCCCeEEEEECCC
Q 009203          434 QTGTPGRQLRLYDIRL  449 (540)
Q Consensus       434 ~~~~~dg~v~i~d~~~  449 (540)
                      ++++.|+.|++|+...
T Consensus       278 as~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          278 AVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEESSSCEEEEEECT
T ss_pred             EEEcCCCeEEEEEECC
Confidence            9999999999999763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.9e-32  Score=260.88  Aligned_cols=245  Identities=13%  Similarity=0.099  Sum_probs=206.9

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC-EEEEEecCC
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDH  349 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg  349 (540)
                      .+|.+.|++++|+|++++|+++    +.|+.|++||+.++........+.   .|...|.+++|+| ++. +|++|+.||
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~----~~d~~v~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~l~~~~~dg   79 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLIT----SWDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCCNFID-NTDLQIYVGTVQG   79 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEE----ETTSEEEEEEEETTTTEEEEEEEE---ECSSCEEEEEEEE-SSSEEEEEEETTS
T ss_pred             cCCCCcEEEEEEcCCCCEEEEE----cCCCeEEEEEeCCCCccccceeee---ecCCceEEEEECC-CCCcEEEEEcCCC
Confidence            4899999999999999999999    999999999998774322333333   2577899999999 899 999999999


Q ss_pred             cEEEEec-CCCCCccccceeeccc--CCcceeEEEeccCCCEEEEEeCCCeEEEEECCC---------CCeeeeeccCcc
Q 009203          350 AVVLWSE-RDAEDSWKPKALHRNL--HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV---------GRADFKHQIESK  417 (540)
Q Consensus       350 ~i~iwd~-~~~~~~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~  417 (540)
                      .|++||+ .++..    .  ...+  |...|.+++|+| +.+|++++.|+.|++||+++         ++++........
T Consensus        80 ~i~~wd~~~~~~~----~--~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T 1yfq_A           80 EILKVDLIGSPSF----Q--ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             CEEEECSSSSSSE----E--ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             eEEEEEeccCCce----E--eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCc
Confidence            9999999 87652    2  2355  899999999999 99999999999999999987         776666667788


Q ss_pred             EEEEeecCCCCCceEEEEEcCCCeEEEEECCC-CcceeeeeccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 009203          418 CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL-RQTEIHAFGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFD  495 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd  495 (540)
                      +.++.++|+     .+++++.|+.|++||+++ .......     ....|...|.+++|+| ++++|++++.||.|++|+
T Consensus       153 v~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~  222 (342)
T 1yfq_A          153 IFTMDTNSS-----RLIVGMNNSQVQWFRLPLCEDDNGTI-----EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF  222 (342)
T ss_dssp             EEEEEECSS-----EEEEEESTTEEEEEESSCCTTCCCEE-----EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred             eEEEEecCC-----cEEEEeCCCeEEEEECCcccccccee-----eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence            999999985     389999999999999997 5432221     2245778899999999 999999999999999999


Q ss_pred             ccCC--C--Cccccccccccc---------ceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          496 IRYS--A--NKPSQSIRAHQK---------RVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       496 ~~~~--~--~~~~~~~~~h~~---------~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++..  .  ......+..|..         .|++++|+|++++|++++.||.|++||+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            9873  0  266677777755         9999999999999999999999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.2e-31  Score=267.67  Aligned_cols=262  Identities=16%  Similarity=0.248  Sum_probs=212.4

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      .+++++.|++|++|+..     ..+.+|.+.|++++|  + +.+|++|+.||+|++||+.+++....+        .+|.
T Consensus       145 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~--------~~h~  213 (435)
T 1p22_A          145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDVNTGEMLNTL--------IHHC  213 (435)
T ss_dssp             EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEESSSCCEEEEE--------CCCC
T ss_pred             EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEECCCCcEEEEE--------cCCC
Confidence            57788899999999765     457899999999999  3 679999999999999999998776665        5788


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      ..|.+++|+  +..|+++    +.|+.|++||+.++........+.+   |...|.+++|   ++.+|++|+.||.|++|
T Consensus       214 ~~v~~l~~~--~~~l~s~----s~dg~i~vwd~~~~~~~~~~~~~~~---~~~~v~~~~~---~~~~l~s~~~dg~i~vw  281 (435)
T 1p22_A          214 EAVLHLRFN--NGMMVTC----SKDRSIAVWDMASPTDITLRRVLVG---HRAAVNVVDF---DDKYIVSASGDRTIKVW  281 (435)
T ss_dssp             SCEEEEECC--TTEEEEE----ETTSCEEEEECSSSSCCEEEEEECC---CSSCEEEEEE---ETTEEEEEETTSEEEEE
T ss_pred             CcEEEEEEc--CCEEEEe----eCCCcEEEEeCCCCCCceeeeEecC---CCCcEEEEEe---CCCEEEEEeCCCeEEEE
Confidence            999999997  4589999    9999999999998754333355554   6788999999   56899999999999999


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEE
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l  433 (540)
                      |+++++.   ...+  .+|...|.++.|+  +.++++|+.||.|++||+++++.+.... +...+.++.+++     .++
T Consensus       282 d~~~~~~---~~~~--~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-----~~l  349 (435)
T 1p22_A          282 NTSTCEF---VRTL--NGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-----KRI  349 (435)
T ss_dssp             ETTTCCE---EEEE--ECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCS-----SEE
T ss_pred             ECCcCcE---EEEE--cCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecC-----CEE
Confidence            9999875   2233  4689999999994  6899999999999999999998877654 456788888843     589


Q ss_pred             EEEcCCCeEEEEECCCCcceeeeec--cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          434 QTGTPGRQLRLYDIRLRQTEIHAFG--WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       434 ~~~~~dg~v~i~d~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ++|+.||.|++||+.+........+  ....+.+|...|++++|  ++.+|++|+.||.|++||+.+
T Consensus       350 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          350 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred             EEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence            9999999999999976541110000  11245689999999999  788999999999999999987

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.1e-31  Score=265.40  Aligned_cols=261  Identities=16%  Similarity=0.258  Sum_probs=207.0

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC----------CCcceeecccccCCCCCCCCceeEEEecCCC-
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR----------GSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-  287 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~----------~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-  287 (540)
                      ..+|.+.|++++|+|+++.+|++|+.||.|+||++...          .....+        .+|...|.+++|+|++. 
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~  195 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL--------RGHQKEGYGLSWNPNLNG  195 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE--------ECCSSCCCCEEECTTSTT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe--------cCCCCCeEEEEeCCCCCC
Confidence            35899999999999965789999999999999999862          222222        47899999999999998 


Q ss_pred             eEEEEeecCCCCCeEEEEecCCCCCc-ee---EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcc
Q 009203          288 SLFSAHTADSGDSQISVLNLNKTKGR-AC---VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSW  363 (540)
Q Consensus       288 ~l~s~~~~~~~d~~i~vwd~~~~~~~-~~---~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  363 (540)
                      +|+++    +.||.|++||+.++... ..   ...+.   .|...|.+++|+|.++.+|++++.||.|++||++++....
T Consensus       196 ~l~s~----~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~  268 (430)
T 2xyi_A          196 YLLSA----SDDHTICLWDINATPKEHRVIDAKNIFT---GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK  268 (430)
T ss_dssp             EEEEE----CTTSCEEEEETTSCCBGGGEEECSEEEC---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS
T ss_pred             eEEEE----eCCCeEEEEeCCCCCCCCceeccceeec---CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc
Confidence            99999    99999999999874321 11   22333   3678899999999778899999999999999999874211


Q ss_pred             ccceeecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCC-CCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCC
Q 009203          364 KPKALHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGV-GRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGR  440 (540)
Q Consensus       364 ~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg  440 (540)
                      ....+  ..|...|++++|+|++. +|++|+.||.|++||+++ +..+... .+...+.++.|+|++.  .+|++++.|+
T Consensus       269 ~~~~~--~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~--~~l~s~~~d~  344 (430)
T 2xyi_A          269 PSHTV--DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE--TILASSGTDR  344 (430)
T ss_dssp             CSEEE--ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT--TEEEEEETTS
T ss_pred             ceeEe--ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC--CEEEEEeCCC
Confidence            12222  45899999999999887 688999999999999998 4444443 3567899999999874  3799999999


Q ss_pred             eEEEEECCCCcceeee-------eccccccCccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeccC
Q 009203          441 QLRLYDIRLRQTEIHA-------FGWKQESSESQSALINQSWSPDGL-YITSGSADPVIHLFDIRY  498 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~dg~i~iwd~~~  498 (540)
                      .|++||+.........       ........+|...|++++|+|++. +|++++.||.|+||++..
T Consensus       345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            9999999873321100       001124567889999999999999 899999999999999984

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=269.73  Aligned_cols=263  Identities=7%  Similarity=-0.016  Sum_probs=203.8

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      .-..+|.+|+|+|| |+++|+++.|++|+  |...++   .+        .+|...|.+++|+|+|           .++
T Consensus        13 ~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~~~~~---~l--------~gh~~~v~~V~FsPdg-----------~~~   67 (588)
T 2j04_A           13 EFEDWKNNLTWARD-GTLYLTTFPDISIG--QPKYAK---DI--------NCNSKNLFHVKEFPLE-----------FEN   67 (588)
T ss_dssp             CCSSSSCCEEECTT-SCEEEECSSSEEEE--EECCCS---CC--------SSBGGGTEEEEEECCC-----------CCC
T ss_pred             HhhccEEEEEECCC-CCEEEEEcCCceee--cccccc---ee--------cCCCccEEEEEECCCC-----------Ccc
Confidence            44578999999996 99999999999999  644332   22        4899999999999987           245


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc-----
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS-----  375 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----  375 (540)
                      .+.+|+....      ..+..  .+...|.+++|+| +|.+|++++.||.|++||..+  +   ...+  . |..     
T Consensus        68 ~~~~~~~~~~------~~~~~--~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~---l~~l--~-~~~~~~~~  130 (588)
T 2j04_A           68 KLDFELAQQN------GLLNS--QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--M---LTNL--D-SKGNLSSR  130 (588)
T ss_dssp             TTTTSCCCSS------CSSTT--SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--E---EEEC--C-CSSCSTTT
T ss_pred             eEEEEeCCCc------eEeec--CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--e---eeec--c-CCCccccc
Confidence            5555554321      12221  1357799999999 999999999999999999544  1   1222  2 433     


Q ss_pred             ceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-------eeee-----ccCccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203          376 AVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-------DFKH-----QIESKCMSVLPNPCDFNLFMVQTGTPGRQLR  443 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  443 (540)
                      .|.+++|||||++|++|+.||+|++||+..+..       +...     .+...+.+++|+|++     +++++.|++|+
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-----Laass~D~tVr  205 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-----LVAALSNNSVF  205 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-----EEEEETTCCEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-----EEEEeCCCeEE
Confidence            599999999999999999999999999998753       2332     234689999999974     78888999999


Q ss_pred             EEECCCCcceeeeecccccc-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEE--c
Q 009203          444 LYDIRLRQTEIHAFGWKQES-SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVW--H  520 (540)
Q Consensus       444 i~d~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~--s  520 (540)
                      +||+.+......    ...+ .+|...|.+++|+  |++||+++ ++.|++||+..  +.......+|.+.|++++|  +
T Consensus       206 lWd~~~~~~~~~----~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~--~~~~~~~~gh~~~V~~va~~~s  276 (588)
T 2j04_A          206 SMTVSASSHQPV----SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKN--YSISSLKTGSLENFHIIPLNHE  276 (588)
T ss_dssp             EECCCSSSSCCC----EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTT--TEEEEEECSCCSCCCEEEETTC
T ss_pred             EEECCCCccccc----eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCC--CeEEEEEcCCCceEEEEEeeeC
Confidence            999987663200    0122 3677899999999  68999997 69999999996  3442333379999999999  9


Q ss_pred             CCCCEEEEEEcCCcEEEEeC
Q 009203          521 YSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       521 ~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |++..|++++.||+ ++|.+
T Consensus       277 ~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          277 KESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             SSCEEEEECSSCEE-EEEES
T ss_pred             CCCCEEEEEcCCCC-EEEee
Confidence            99999999999999 99974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.4e-31  Score=255.74  Aligned_cols=297  Identities=14%  Similarity=0.127  Sum_probs=207.7

Q ss_pred             eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc---------hhcc
Q 009203          150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN---------HVSS  220 (540)
Q Consensus       150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~---------~~~~  220 (540)
                      .+.+|...|.++.+.|...                               .+++++.|++|++|+..         ..+.
T Consensus         6 ~~~gH~~~v~~~~~~~~~~-------------------------------~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~   54 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGR-------------------------------HVATCSSDQHIKVFKLDKDTSNWELSDSWR   54 (351)
T ss_dssp             EECCCSSCEEEEEECSSSS-------------------------------EEEEEETTSEEEEEEECSSSCCEEEEEEEE
T ss_pred             cCcccccceeEEEEcCCCC-------------------------------EEEEeeCCCeEEEEECCCCCCcceecceec
Confidence            4568999999999998743                               57788899999999654         2357


Q ss_pred             cccCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCCcc-----eeecccccCCCCCCCCceeEEEecC--CCeEEEE
Q 009203          221 LHKRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGSGA-----SLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSA  292 (540)
Q Consensus       221 ~h~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~  292 (540)
                      +|.+.|++++|+|. ++.+|++|+.||.|++||+..+....     ......    .+|...|.+++|+|+  +.+|+++
T Consensus        55 ~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~  130 (351)
T 3f3f_A           55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL----NDSKGSLYSVKFAPAHLGLKLACL  130 (351)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE----CCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee----cccCCceeEEEEcCCCCCcEEEEe
Confidence            99999999999993 28999999999999999998764321     111111    478999999999999  9999999


Q ss_pred             eecCCCCCeEEEEecCCCCCceeEE------eecC-CCCcccceeEEEEeCC--CCCEEEEEecCCcEEEEecCCCCCcc
Q 009203          293 HTADSGDSQISVLNLNKTKGRACVT------FLDD-KPHVKGIINSIIFLPW--ENPCFATGGSDHAVVLWSERDAEDSW  363 (540)
Q Consensus       293 ~~~~~~d~~i~vwd~~~~~~~~~~~------~~~~-~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~  363 (540)
                          +.|+.|++||+.++.......      .+.. ...+...+.+++|+|.  ++.++++++.|+.+.+|+...+..  
T Consensus       131 ----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~--  204 (351)
T 3f3f_A          131 ----GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL--  204 (351)
T ss_dssp             ----ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE--
T ss_pred             ----cCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce--
Confidence                999999999998764322211      1111 1135678999999993  289999999999998888777653  


Q ss_pred             ccceeecccCCcceeEEEeccCC----CEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceEEEEEc-
Q 009203          364 KPKALHRNLHSSAVMGVAGMQQK----QIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFMVQTGT-  437 (540)
Q Consensus       364 ~~~~~~~~~~~~~v~~l~~s~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-  437 (540)
                       .......+|...|++++|+|++    ++|++++.||.|++||++.+......... .........+..   ..+..+. 
T Consensus       205 -~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  280 (351)
T 3f3f_A          205 -HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV---DMDAQGRS  280 (351)
T ss_dssp             -EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------
T ss_pred             -eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccc---cccccccc
Confidence             1233345699999999999998    89999999999999999876543332111 111111111111   2222222 


Q ss_pred             ---CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          438 ---PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       438 ---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                         ....+.+|+......       ...+.+|...|++++|+|++++|++|+.||.|+||++.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          281 DSNTEEKAELQSNLQVEL-------LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             ----------CCSEEEEE-------EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             ccccceeeeecccccccE-------EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence               223344444332221       124567999999999999999999999999999999997

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-31  Score=255.37  Aligned_cols=271  Identities=10%  Similarity=0.035  Sum_probs=203.4

Q ss_pred             EEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC
Q 009203          230 SLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK  309 (540)
Q Consensus       230 ~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~  309 (540)
                      .+.+| +.+|++|+.||+|++||+.+++.+..+.          ...|.++.|+|+   ++++    +.|++|++|+...
T Consensus        43 ~~~~d-~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------~~~v~~~~~~~~---~~s~----s~D~~i~~w~~~~  104 (343)
T 3lrv_A           43 SMYYD-KWVCMCRCEDGALHFTQLKDSKTITTIT----------TPNPRTGGEHPA---IISR----GPCNRLLLLYPGN  104 (343)
T ss_dssp             SSSEE-EEEEEEEEETTEEEEEEESSSSCEEEEE----------EECCCTTCCCCS---EEEE----CSTTEEEEEETTT
T ss_pred             hhcCC-CCEEEEECCCCcEEEEECCCCcEEEEEe----------cCCceeeeeCCc---eEEe----cCCCeEEEEEccC
Confidence            34454 7899999999999999999988766664          244778889987   8888    9999999998763


Q ss_pred             C------CCceeEEeecCCCCcccceeEEEEeCC-CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          310 T------KGRACVTFLDDKPHVKGIINSIIFLPW-ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       310 ~------~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      .      .....+..+..  .|.+.|.+++|+|. ++.+|++|+.||+|++||+++++.    .......+...|.+++|
T Consensus       105 ~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~~i~~~~~  178 (343)
T 3lrv_A          105 QITILDSKTNKVLREIEV--DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ----YIVHSAKSDVEYSSGVL  178 (343)
T ss_dssp             EEEEEETTTCCEEEEEEC--CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE----EEEECCCSSCCCCEEEE
T ss_pred             ceEEeecCCcceeEEeec--CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE----EEEEecCCCCceEEEEE
Confidence            2      01122323221  24578999999983 578999999999999999998874    22222346668999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCee-eeec--cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRAD-FKHQ--IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      +|+|.+|++|+.||.|++||+++++.+ ..+.  +...+.++.|+|++   .+|++++ ++.|++||+++........  
T Consensus       179 ~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g---~~l~s~~-~~~v~iwd~~~~~~~~~~~--  252 (343)
T 3lrv_A          179 HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG---YWMVVEC-DQTVVCFDLRKDVGTLAYP--  252 (343)
T ss_dssp             CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTS---SEEEEEE-SSBEEEEETTSSTTCBSSC--
T ss_pred             CCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCC---CEEEEEe-CCeEEEEEcCCCCcceeec--
Confidence            999999999999999999999998876 4433  47889999999987   6899988 5599999999876533211  


Q ss_pred             ccccCccccCe--EEEEEcCCCCEEEEEeC-CCcEEEEeccCCCCcccccccccccceeEEEEcC---CCCEEEEEEcCC
Q 009203          460 KQESSESQSAL--INQSWSPDGLYITSGSA-DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY---SHPLLISISSDL  533 (540)
Q Consensus       460 ~~~~~~~~~~v--~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~---~~~~l~s~~~dg  533 (540)
                        .+..|...+  .+++|+|+|++|++++. |+.|+||++...  ...  +..  .++..++|.+   ++..|++++.||
T Consensus       253 --~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~--~~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~d~  324 (343)
T 3lrv_A          253 --TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK--TKN--WTK--DEESALCLQSDTADFTDMDVVCGDG  324 (343)
T ss_dssp             --CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT--TCS--EEE--EEEEECCC----CCCCEEEEEEETT
T ss_pred             --ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc--ccc--eEe--cCceeEecCccccccceeEEEecCC
Confidence              112233334  46999999999999988 999999999763  211  111  5678888988   888999999999


Q ss_pred             cEEEE
Q 009203          534 NIGLH  538 (540)
Q Consensus       534 ~v~iw  538 (540)
                      .+.++
T Consensus       325 ~~~~~  329 (343)
T 3lrv_A          325 GIAAI  329 (343)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            88876

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.6e-30  Score=259.52  Aligned_cols=283  Identities=10%  Similarity=0.046  Sum_probs=226.1

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ..+.+++|+| ++.++++++.|+.|++||+.+++.........   ..+|...|.+++|++++.+++++    +.|+.|+
T Consensus       123 ~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~s~----~~d~~v~  194 (433)
T 3bws_A          123 FQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK---YKKKLGFVETISIPEHNELWVSQ----MQANAVH  194 (433)
T ss_dssp             SCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHH---HHTTCCEEEEEEEGGGTEEEEEE----GGGTEEE
T ss_pred             CCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCccc---ccccCCceeEEEEcCCCEEEEEE----CCCCEEE
Confidence            4566999999 58999999999999999999887554222111   14788899999999999999999    9999999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEE-EEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      +||+.++   ..+..+..   |...+.+++|+| ++..++ +++.|+.|++||+++++..   ..+   .+...+.+++|
T Consensus       195 ~~d~~~~---~~~~~~~~---~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~---~~~---~~~~~~~~~~~  261 (433)
T 3bws_A          195 VFDLKTL---AYKATVDL---TGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEI---RKT---DKIGLPRGLLL  261 (433)
T ss_dssp             EEETTTC---CEEEEEEC---SSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEE---EEC---CCCSEEEEEEE
T ss_pred             EEECCCc---eEEEEEcC---CCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEE---EEe---cCCCCceEEEE
Confidence            9999876   34444443   456799999999 887774 5558999999999987641   111   23456999999


Q ss_pred             ccCCCEEEEEe--------CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          383 MQQKQIVLSAG--------ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       383 s~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      +|+|+.+++++        .||.|++||+.+++.+........+..+.|+|++.  .++++++.++.|++||+.+++...
T Consensus       262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~--~l~~~~~~~~~v~v~d~~~~~~~~  339 (433)
T 3bws_A          262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTEN--KIYVSDMCCSKIEVYDLKEKKVQK  339 (433)
T ss_dssp             CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTT--EEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCC--EEEEEecCCCEEEEEECCCCcEEE
Confidence            99999999888        58899999999988776665566788899999863  366778999999999999766432


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEEeC---------------CCcEEEEeccCCCCcccccccccccceeEEEE
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSGSA---------------DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVW  519 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~---------------dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~  519 (540)
                      . +       .+...+.+++|+|+|++|++++.               ||.|++||+.+  ++.+..+.. ...+.+++|
T Consensus       340 ~-~-------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~--~~~~~~~~~-~~~~~~~~~  408 (433)
T 3bws_A          340 S-I-------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT--DTVKEFWEA-GNQPTGLDV  408 (433)
T ss_dssp             E-E-------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT--TEEEEEEEC-SSSEEEEEE
T ss_pred             E-e-------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC--CcEEEEecC-CCCCceEEE
Confidence            2 1       24567999999999999888876               57999999987  666666665 457899999


Q ss_pred             cCCCCEEEEEEc-CCcEEEEeC
Q 009203          520 HYSHPLLISISS-DLNIGLHKI  540 (540)
Q Consensus       520 s~~~~~l~s~~~-dg~v~iw~l  540 (540)
                      +|+|++|++++. |+.|++|++
T Consensus       409 s~dg~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          409 SPDNRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             CTTSCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCEEEEEECCCCeEEEEEe
Confidence            999999988875 999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-30  Score=254.14  Aligned_cols=287  Identities=11%  Similarity=0.118  Sum_probs=223.4

Q ss_pred             CeeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhc
Q 009203          147 SSTQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVS  219 (540)
Q Consensus       147 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~  219 (540)
                      ....+.+|...|.++++.|...                            ....+++++.|+.|++|+..       ..+
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~----------------------------~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~   82 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTL----------------------------PGNFLIAGSWANDVRCWEVQDSGQTIPKAQ   82 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTS----------------------------SSEEEEEEETTSEEEEEEECTTSCEEEEEE
T ss_pred             eeEeccCCCCceEEEEEcCCCC----------------------------CceEEEEECCCCcEEEEEcCCCCceeEEEe
Confidence            3445678999999999998720                            01257788899999999754       357


Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEE--ecCCCeEEEEeecCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAW--HPQGNSLFSAHTADS  297 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~--~~~~~~l~s~~~~~~  297 (540)
                      .+|.+.|++++|+|+ +.+|++|+.||.|++||+.+++....         .+|...|.+++|  ++++.+|+++    +
T Consensus        83 ~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~l~~~----~  148 (368)
T 3mmy_A           83 QMHTGPVLDVCWSDD-GSKVFTASCDKTAKMWDLSSNQAIQI---------AQHDAPVKTIHWIKAPNYSCVMTG----S  148 (368)
T ss_dssp             EECSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEE---------EECSSCEEEEEEEECSSCEEEEEE----E
T ss_pred             ccccCCEEEEEECcC-CCEEEEEcCCCcEEEEEcCCCCceee---------ccccCceEEEEEEeCCCCCEEEEc----c
Confidence            899999999999995 99999999999999999998764432         268899999999  8899999999    9


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .|+.|++||+.+++   .+..+..    ...+.++.+.+   ..+++++.++.+.+|+++.....   .......+...+
T Consensus       149 ~dg~i~vwd~~~~~---~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~  215 (368)
T 3mmy_A          149 WDKTLKFWDTRSSN---PMMVLQL----PERCYCADVIY---PMAVVATAERGLIVYQLENQPSE---FRRIESPLKHQH  215 (368)
T ss_dssp             TTSEEEEECSSCSS---CSEEEEC----SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEE---EEECCCSCSSCE
T ss_pred             CCCcEEEEECCCCc---EEEEEec----CCCceEEEecC---CeeEEEeCCCcEEEEEeccccch---hhhccccccCCC
Confidence            99999999999873   3444443    23577777765   57888999999999999876531   111112244556


Q ss_pred             eEEEeccCCCE----EEEEeCCCeEEEEECCCCC---eeeeeccCc-------------cEEEEeecCCCCCceEEEEEc
Q 009203          378 MGVAGMQQKQI----VLSAGADKRIIGFDAGVGR---ADFKHQIES-------------KCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       378 ~~l~~s~~~~~----l~~~~~dg~i~iwd~~~~~---~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      .++.+.+++..    +++++.||.|++||++...   .........             .+.++.|+|++   .+|++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~s~~  292 (368)
T 3mmy_A          216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH---GTLATVG  292 (368)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT---CCEEEEE
T ss_pred             ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC---CEEEEEc
Confidence            66666555544    9999999999999999873   233333222             58899999987   6899999


Q ss_pred             CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .||.|++||+.++....       .+.+|...|++++|+|+|++|++++.|+..+.|++-.
T Consensus       293 ~dg~i~iwd~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          293 SDGRFSFWDKDARTKLK-------TSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             TTSCEEEEETTTTEEEE-------ECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             cCCeEEEEECCCCcEEE-------EecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence            99999999999876533       4567889999999999999999999998666665543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.1e-30  Score=255.67  Aligned_cols=253  Identities=17%  Similarity=0.204  Sum_probs=204.9

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhcc
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSS  220 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~  220 (540)
                      ...+.+|...|.++++.|...                               .+++++.|+.|++|+..       ..+.
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~-------------------------------~l~~~~~dg~i~iw~~~~~~~~~~~~~~   52 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGK-------------------------------RLATCSSDKTIKIFEVEGETHKLIDTLT   52 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSS-------------------------------EEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred             cEEecCCcccEEEEEEcCCCC-------------------------------EEEEEECCCcEEEEecCCCcceeeeEec
Confidence            345678999999999998743                               57788889999999764       3578


Q ss_pred             cccCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecC--CCeEEEEeec
Q 009203          221 LHKRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTA  295 (540)
Q Consensus       221 ~h~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~  295 (540)
                      +|.+.|++++|+|+ ++.+|++|+.||.|++||+.+++  ....+        .+|...|.+++|+|+  +.+|+++   
T Consensus        53 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~~~---  121 (379)
T 3jrp_A           53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH--------AVHSASVNSVQWAPHEYGPLLLVA---  121 (379)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE--------CCCSSCEEEEEECCGGGCSEEEEE---
T ss_pred             CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee--------cCCCcceEEEEeCCCCCCCEEEEe---
Confidence            99999999999873 27899999999999999999875  22222        478899999999999  9999999   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC------------CCCEEEEEecCCcEEEEecCCCCCcc
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW------------ENPCFATGGSDHAVVLWSERDAEDSW  363 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------------~~~~l~s~~~dg~i~iwd~~~~~~~~  363 (540)
                       +.|+.|++||+.++...... .+..   |...|.+++|+|.            ++.+|++|+.||.|++||++++....
T Consensus       122 -~~d~~i~v~d~~~~~~~~~~-~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  196 (379)
T 3jrp_A          122 -SSDGKVSVVEFKENGTTSPI-IIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY  196 (379)
T ss_dssp             -ETTSEEEEEECCTTSCCCEE-EEEC---CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE
T ss_pred             -cCCCcEEEEecCCCCceeeE-EecC---CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce
Confidence             99999999999876432222 3332   5678999999995            48999999999999999998775422


Q ss_pred             ccceeecccCCcceeEEEeccC---CCEEEEEeCCCeEEEEECCCCCee---e---eeccCccEEEEeecCCCCCceEEE
Q 009203          364 KPKALHRNLHSSAVMGVAGMQQ---KQIVLSAGADKRIIGFDAGVGRAD---F---KHQIESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       364 ~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~l~  434 (540)
                      .. .....+|...|.+++|+|+   +.+|++++.||.|++||++++...   .   .......+.++.|+|++   .+|+
T Consensus       197 ~~-~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~  272 (379)
T 3jrp_A          197 VL-ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG---NVLA  272 (379)
T ss_dssp             EE-EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS---CCEE
T ss_pred             ee-EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC---CEEE
Confidence            11 1223568999999999999   899999999999999999986421   1   12356778999999988   6899


Q ss_pred             EEcCCCeEEEEECCCCc
Q 009203          435 TGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~  451 (540)
                      +++.||.|++||+....
T Consensus       273 ~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          273 LSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEESSSSEEEEEEEETT
T ss_pred             EecCCCcEEEEeCCCCC
Confidence            99999999999998654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=2.2e-29  Score=247.76  Aligned_cols=300  Identities=11%  Similarity=0.086  Sum_probs=225.3

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcE-EEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQL-FVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~-l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      .+.+++.|+.|++|+..     ..+.+|. .+.+++|+|+ +.+ +++++.|+.|++||+.+++....+.        .+
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~~~~~~~~~--------~~   73 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVP--------AG   73 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEE--------CS
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCC-CCEEEEECCCCCeEEEEECCCCeEEEEEE--------CC
Confidence            46678889999999765     3355564 5899999997 665 4788899999999999887655552        22


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEE-EEEecCCcEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCF-ATGGSDHAVV  352 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~  352 (540)
                       ..+.+++|+|++++|+++   ++.++.|++||+.++   ..+..+..    ...+.+++|+| +++.| ++++.|+.|+
T Consensus        74 -~~v~~~~~spdg~~l~~~---~~~~~~v~v~d~~~~---~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~v~  141 (391)
T 1l0q_A           74 -SSPQGVAVSPDGKQVYVT---NMASSTLSVIDTTSN---TVAGTVKT----GKSPLGLALSP-DGKKLYVTNNGDKTVS  141 (391)
T ss_dssp             -SSEEEEEECTTSSEEEEE---ETTTTEEEEEETTTT---EEEEEEEC----SSSEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred             -CCccceEECCCCCEEEEE---ECCCCEEEEEECCCC---eEEEEEeC----CCCcceEEECC-CCCEEEEEeCCCCEEE
Confidence             379999999999987654   167899999999986   44555543    24589999999 88866 7888899999


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCCCEE-EEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV-LSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (540)
                      +||+.+++.   ...+.   ....+.+++|+|+++.+ ++++.++.|++||+++++..........+.++.++|++   .
T Consensus       142 ~~d~~~~~~---~~~~~---~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g---~  212 (391)
T 1l0q_A          142 VINTVTKAV---INTVS---VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG---T  212 (391)
T ss_dssp             EEETTTTEE---EEEEE---CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTS---S
T ss_pred             EEECCCCcE---EEEEe---cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCC---C
Confidence            999998764   22221   33567999999999887 56778999999999999887777777788899999987   5


Q ss_pred             EEEEEc---CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE-EEEeCCCcEEEEeccCCCCcccccc
Q 009203          432 MVQTGT---PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI-TSGSADPVIHLFDIRYSANKPSQSI  507 (540)
Q Consensus       432 ~l~~~~---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~sg~~dg~i~iwd~~~~~~~~~~~~  507 (540)
                      ++++++   .++.|++||+.+++....       +..| ..+.+++|+|+|++| ++++.|+.|++||+.+  ++.+..+
T Consensus       213 ~l~~~~~~~~~~~v~~~d~~~~~~~~~-------~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~--~~~~~~~  282 (391)
T 1l0q_A          213 KAYVTNVDKYFNTVSMIDTGTNKITAR-------IPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT--NTITATM  282 (391)
T ss_dssp             EEEEEEECSSCCEEEEEETTTTEEEEE-------EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEE
T ss_pred             EEEEEecCcCCCcEEEEECCCCeEEEE-------EecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCC--CcEEEEE
Confidence            666666   789999999998764332       1223 357899999999987 5778899999999997  6666666


Q ss_pred             ccccccee---EEE------------EcCCC----------CEEEEEEcCCcEEEEeC
Q 009203          508 RAHQKRVF---KAV------------WHYSH----------PLLISISSDLNIGLHKI  540 (540)
Q Consensus       508 ~~h~~~i~---~l~------------~s~~~----------~~l~s~~~dg~v~iw~l  540 (540)
                      ..|..+..   .+.            |+.+.          -.+...+.|..+++|++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  340 (391)
T 1l0q_A          283 AVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF  340 (391)
T ss_dssp             ECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEEC
T ss_pred             ECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEEC
Confidence            55543321   122            22111          23566677889999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.8e-31  Score=260.96  Aligned_cols=250  Identities=14%  Similarity=0.061  Sum_probs=169.7

Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC-------CCCCEEEEE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP-------WENPCFATG  345 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-------~~~~~l~s~  345 (540)
                      |...+....+.+++.+|+++    +.|++|++||+.++.. .....+....+|.+.|++++|+|       .++++|++|
T Consensus        88 ~~~~~~~~~~~~~~~~las~----~~d~~v~lw~~~~~~~-~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~  162 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACV----CQDNTVRLIITKNETI-ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV  162 (393)
T ss_dssp             ---------CCEEEEEEEEE----ETTSCEEEEEEETTEE-EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred             cCCCcceeecCCCCCEEEEE----eCCCcEEEEECCCCcc-ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence            44444555566677889999    9999999999987622 12233444456889999999986       267899999


Q ss_pred             ecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeee------------
Q 009203          346 GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKH------------  412 (540)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~------------  412 (540)
                      +.|++|+|||+.++..     ......|...|.+++|+|++ .+|++++.||+|++||+++++.....            
T Consensus       163 s~D~tv~~Wd~~~~~~-----~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~  237 (393)
T 4gq1_A          163 GDDCTLIIWRLTDEGP-----ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLL  237 (393)
T ss_dssp             ETTSEEEEEEEETTEE-----EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSE
T ss_pred             ECCCeEEEEECCCCce-----eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEE
Confidence            9999999999987653     22234588999999999987 47999999999999999887653211            


Q ss_pred             --------------ccCccEEEEeec-CCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc------------cccCc
Q 009203          413 --------------QIESKCMSVLPN-PCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK------------QESSE  465 (540)
Q Consensus       413 --------------~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~------------~~~~~  465 (540)
                                    .....+.++.|. +++   ..+++++.|+++++||+.............            .....
T Consensus       238 s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg---~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          238 TLNTLPLVNTCHSSGIASSLANVRWIGSDG---SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             EEESGGGC------CCSSSCSEEEEETTTT---CEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred             ecccccceeeeecccccccceeeeeecCCC---CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence                          112334455655 444   689999999999999998755322111000            00011


Q ss_pred             cccCeEEEEEcC--CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          466 SQSALINQSWSP--DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       466 ~~~~v~~~~~sp--~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      +. ......|+|  ++.++++|+.||.|++||+.+  +.....+..|..+|++++|+|||++||+++.|| +.+|+
T Consensus       315 ~~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~--~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          315 FP-SLLGACPHPRYMDYFATAHSQHGLIQLINTYE--KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR  386 (393)
T ss_dssp             SC-CSSCCEECSSCTTEEEEEETTTTEEEEEETTC--TTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred             cC-cceeEEEccCCCCEEEEEECCCCEEEEEECCC--CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence            11 122233444  445677888999999999997  667777788999999999999999999998776 55554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.7e-29  Score=246.09  Aligned_cols=265  Identities=9%  Similarity=0.071  Sum_probs=212.4

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeE-EEEeecCCCCCeEEEEecCCCCCce
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSL-FSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      +.++++++.|+.|++||+.+++....+.        +| ..+.+++|+|+|++| +++    +.++.|++||+.++   +
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~--------~~-~~~~~~~~s~dg~~l~~~~----~~d~~i~v~d~~~~---~   65 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIP--------VG-SNPMGAVISPDGTKVYVAN----AHSNDVSIIDTATN---N   65 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEE--------CS-SSEEEEEECTTSSEEEEEE----GGGTEEEEEETTTT---E
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEee--------cC-CCcceEEECCCCCEEEEEC----CCCCeEEEEECCCC---e
Confidence            4578999999999999999887665552        33 348999999999977 565    78999999999876   4


Q ss_pred             eEEeecCCCCcccceeEEEEeCCCCCEEE-EEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEE-EEE
Q 009203          315 CVTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV-LSA  392 (540)
Q Consensus       315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~  392 (540)
                      .+..+..    ...+.+++|+| ++++|+ +++.++.|++||+.+++.   ...+   .+...+.+++|+|+|+.+ +++
T Consensus        66 ~~~~~~~----~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~---~~~~---~~~~~~~~~~~s~dg~~l~~~~  134 (391)
T 1l0q_A           66 VIATVPA----GSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTV---AGTV---KTGKSPLGLALSPDGKKLYVTN  134 (391)
T ss_dssp             EEEEEEC----SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEE---EEEE---ECSSSEEEEEECTTSSEEEEEE
T ss_pred             EEEEEEC----CCCccceEECC-CCCEEEEEECCCCEEEEEECCCCeE---EEEE---eCCCCcceEEECCCCCEEEEEe
Confidence            4555543    23799999999 888775 555679999999998864   2222   244578999999999977 678


Q ss_pred             eCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE
Q 009203          393 GADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN  472 (540)
Q Consensus       393 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~  472 (540)
                      +.++.|++||+.+++.+........+..+.|+|++.  .++++++.++.|++||+.++......        .+...+.+
T Consensus       135 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~--------~~~~~~~~  204 (391)
T 1l0q_A          135 NGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGT--KVYVANFDSMSISVIDTVTNSVIDTV--------KVEAAPSG  204 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEE--------ECSSEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCC--EEEEEeCCCCEEEEEECCCCeEEEEE--------ecCCCccc
Confidence            889999999999998887777777788999999873  24478889999999999987643221        23457899


Q ss_pred             EEEcCCCCEEEEEe---CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEE-EEEEcCCcEEEEeC
Q 009203          473 QSWSPDGLYITSGS---ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL-ISISSDLNIGLHKI  540 (540)
Q Consensus       473 ~~~sp~g~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l-~s~~~dg~v~iw~l  540 (540)
                      ++|+|+|++|++++   .++.|++||+.+  ++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus       205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~--~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGT--NKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEETTT--TEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             eEECCCCCEEEEEecCcCCCcEEEEECCC--CeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence            99999999999887   689999999997  66777777665 47899999999877 67788999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-29  Score=252.25  Aligned_cols=245  Identities=11%  Similarity=0.044  Sum_probs=196.3

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC--------------------------------
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK--------------------------------  322 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--------------------------------  322 (540)
                      .++.+++|+++|++|+++     .++.|++||+.++.....+..+...                                
T Consensus         5 ~p~~~v~~s~dg~~l~~~-----~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-----IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-----ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-----eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            468899999999977765     5789999999887511122222210                                


Q ss_pred             -------------------CCcccceeEEEEeCCCCCEE-EEEecCCcEEEEecC--CCCCccccceeecccCCcceeEE
Q 009203          323 -------------------PHVKGIINSIIFLPWENPCF-ATGGSDHAVVLWSER--DAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       323 -------------------~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                                         +.|.+.|.+++|+| ++.+| ++|+.||.|++||+.  ++..   ...+....|...|.++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~v~~~  155 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNV---LKLRKRFCFSKRPNAI  155 (450)
T ss_dssp             --------------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSC---EEEEEEEECSSCEEEE
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCce---eeeeecccCCCCceEE
Confidence                               12344799999999 88886 899999999999999  6664   3333323577899999


Q ss_pred             EeccCCCEEEEEeCCCeEEEEECCCCCeee-----eeccCccEEEEeecCC---CCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          381 AGMQQKQIVLSAGADKRIIGFDAGVGRADF-----KHQIESKCMSVLPNPC---DFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      +|+|++.+|++++.+|.|++|++.++....     ...+...+.++.|+|+   +   .+|++|+.|+.|++||+.++..
T Consensus       156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~---~~l~s~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH---QFIITSDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC---EEEEEEETTSCEEEEEESCTTC
T ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC---cEEEEEcCCCcEEEEECCCCce
Confidence            999999999999999999999998876542     2345578899999998   5   7999999999999999988765


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-----------------------
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-----------------------  509 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----------------------  509 (540)
                      ...      ...+|...|++++|+ ++++|++|+.|+.|++||+.+  ++++..+..                       
T Consensus       233 ~~~------~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (450)
T 2vdu_B          233 VDK------WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT--GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN  303 (450)
T ss_dssp             EEE------ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT--CCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred             eee------eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC--CcEeeeecchhhhhhhhhhccccccccccccc
Confidence            432      235788999999999 999999999999999999997  565555542                       


Q ss_pred             --cccceeEEEEcCCCCEEEEEE-cCCcEEEEeC
Q 009203          510 --HQKRVFKAVWHYSHPLLISIS-SDLNIGLHKI  540 (540)
Q Consensus       510 --h~~~i~~l~~s~~~~~l~s~~-~dg~v~iw~l  540 (540)
                        +...|.+++|+|++++|++++ .|+.|+||++
T Consensus       304 ~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          304 DIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             -CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             ccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence              234689999999999999999 8999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.3e-29  Score=243.76  Aligned_cols=239  Identities=11%  Similarity=0.098  Sum_probs=178.6

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEE-EEEecCC
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCF-ATGGSDH  349 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg  349 (540)
                      .+|...|++++|+|||++|++|    +.++ +++||+.++   ........     ..+..+++.+ +++.+ ++++.|+
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g----~~~~-~~iw~~~~~---~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~d~   81 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILS----TLKS-FEIYNVHPV---AHIMSQEM-----RHLSKVRMLH-RTNYVAFVTGVKE   81 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEE----CSSE-EEEEEETTE---EEEEEEEC-----SCCCEEEECT-TSSEEEEECSSTT
T ss_pred             ccCCCceEEEEECCCCCEEEEE----cCCE-EEEEecCCc---ceeeeeec-----CCeEEEEEcC-CCCEEEEEECCcc
Confidence            5789999999999999999998    6664 789998864   22322221     2377888988 66666 6678889


Q ss_pred             cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC-CeeeeeccCccEEEEeecCCCC
Q 009203          350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG-RADFKHQIESKCMSVLPNPCDF  428 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~  428 (540)
                      +|++||+.+++.+   ..+   .+...|.+++|+++.  ++++ .|+.|++||+.++ +.+.....  ....+++++ . 
T Consensus        82 ~v~iWd~~~~~~~---~~~---~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~-~-  148 (355)
T 3vu4_A           82 VVHIWDDVKKQDV---SRI---KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN-G-  148 (355)
T ss_dssp             EEEEEETTTTEEE---EEE---ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET-T-
T ss_pred             EEEEEECCCCcEE---EEE---ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc-c-
Confidence            9999999998752   222   266789999998753  4443 4789999999987 55544433  233344455 2 


Q ss_pred             CceEEEE-EcCCCeEEEEECCCCcceee--------eecc-ccccCccccCeEEEEEcCCCCEEEEEeCCCc-EEEEecc
Q 009203          429 NLFMVQT-GTPGRQLRLYDIRLRQTEIH--------AFGW-KQESSESQSALINQSWSPDGLYITSGSADPV-IHLFDIR  497 (540)
Q Consensus       429 ~~~~l~~-~~~dg~v~i~d~~~~~~~~~--------~~~~-~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~-i~iwd~~  497 (540)
                        .++++ |+.+|.|++||+.++.....        .+.. ...+.+|...|++++|+|+|++|++|+.||+ |+|||+.
T Consensus       149 --~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~  226 (355)
T 3vu4_A          149 --LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE  226 (355)
T ss_dssp             --EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT
T ss_pred             --EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC
Confidence              23333 78999999999997541100        0000 2245789999999999999999999999998 9999999


Q ss_pred             CCCCccccccc-c-cccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          498 YSANKPSQSIR-A-HQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       498 ~~~~~~~~~~~-~-h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +  ++++..+. + |...|++++|+|+|++|++++.|++|+|||+
T Consensus       227 ~--~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          227 D--GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             T--CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             C--CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence            8  77888887 5 9999999999999999999999999999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.6e-30  Score=274.02  Aligned_cols=252  Identities=17%  Similarity=0.207  Sum_probs=201.3

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-------hhccc
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-------HVSSL  221 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-------~~~~~  221 (540)
                      ..+.+|...|.++.+.|...                               .+++++.|++|++|+..       ..+.+
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~-------------------------------~latg~~dg~I~vwd~~~~~~~~~~~l~~   51 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGK-------------------------------RLATCSSDKTIKIFEVEGETHKLIDTLTG   51 (753)
T ss_dssp             -----CCCCEEEECCCSSSC-------------------------------CEEEEETTTEEEEEEEETTEEEEEEEECC
T ss_pred             eecccCcceeEEEEECCCCC-------------------------------eEEEEECCCcEEEEecCCCCCccceeccC
Confidence            34578999999999988742                               47788889999999753       45789


Q ss_pred             ccCceEEEEEecCC-CcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecC--CCeEEEEeecC
Q 009203          222 HKRKLRSLSLNPVN-EQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQ--GNSLFSAHTAD  296 (540)
Q Consensus       222 h~~~V~~l~~spd~-~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~--~~~l~s~~~~~  296 (540)
                      |.+.|++++|+|+. +.+|++|+.||.|++||+.++.  ....+        .+|...|.+++|+|+  +.+|+++    
T Consensus        52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~--------~~h~~~V~~v~~sp~~~~~~l~sg----  119 (753)
T 3jro_A           52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH--------AVHSASVNSVQWAPHEYGPLLLVA----  119 (753)
T ss_dssp             CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE--------CCCSSCEEEEEECCGGGCSEEEEE----
T ss_pred             CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc--------cCCCCCeEEEEECCCCCCCEEEEE----
Confidence            99999999999842 8899999999999999998865  22222        579999999999999  9999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC------------CCCEEEEEecCCcEEEEecCCCCCccc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW------------ENPCFATGGSDHAVVLWSERDAEDSWK  364 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------------~~~~l~s~~~dg~i~iwd~~~~~~~~~  364 (540)
                      +.||.|++||+.++...... .+..   |...|.+++|+|.            ++.+|++|+.||.|++||++++.....
T Consensus       120 s~dg~I~vwdl~~~~~~~~~-~~~~---~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~  195 (753)
T 3jro_A          120 SSDGKVSVVEFKENGTTSPI-IIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV  195 (753)
T ss_dssp             ETTSEEEEEECCSSSCCCCE-EEEC---CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE
T ss_pred             eCCCcEEEEEeecCCCccee-Eeec---CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce
Confidence            99999999999876332222 2332   5678999999994            488999999999999999988753221


Q ss_pred             cceeecccCCcceeEEEeccC---CCEEEEEeCCCeEEEEECCCCCe------eeeeccCccEEEEeecCCCCCceEEEE
Q 009203          365 PKALHRNLHSSAVMGVAGMQQ---KQIVLSAGADKRIIGFDAGVGRA------DFKHQIESKCMSVLPNPCDFNLFMVQT  435 (540)
Q Consensus       365 ~~~~~~~~~~~~v~~l~~s~~---~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~  435 (540)
                      .. ....+|...|++++|+|+   +.+|++++.||.|++||++++..      .........+.++.|+|++   .++++
T Consensus       196 ~~-~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg---~~l~s  271 (753)
T 3jro_A          196 LE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG---NVLAL  271 (753)
T ss_dssp             EE-EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT---CCEEE
T ss_pred             ee-eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC---CEEEE
Confidence            11 223569999999999999   89999999999999999998642      1223355678899999987   68999


Q ss_pred             EcCCCeEEEEECCCCc
Q 009203          436 GTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       436 ~~~dg~v~i~d~~~~~  451 (540)
                      |+.||.|++||+....
T Consensus       272 ~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          272 SGGDNKVTLWKENLEG  287 (753)
T ss_dssp             ECSSSCEECCBCCSSS
T ss_pred             EcCCCEEEEEecCCCC
Confidence            9999999999998654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=4.7e-30  Score=252.22  Aligned_cols=255  Identities=11%  Similarity=0.078  Sum_probs=175.3

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--------CCCeEEE
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--------QGNSLFS  291 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--------~~~~l~s  291 (540)
                      ..|...+....+.+ .+.+|++|+.|++|+|||+..+........   ....||.+.|++++|+|        |+++|++
T Consensus        86 ~~~~~~~~~~~~~~-~~~~las~~~d~~v~lw~~~~~~~~~~~~~---~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las  161 (393)
T 4gq1_A           86 NLHDGDGNVNSSPV-YSLFLACVCQDNTVRLIITKNETIITQHVL---GGKSGHHNFVNDIDIADVYSADNRLAEQVIAS  161 (393)
T ss_dssp             C----------CCE-EEEEEEEEETTSCEEEEEEETTEEEEEEEE---CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEE
T ss_pred             cccCCCcceeecCC-CCCEEEEEeCCCcEEEEECCCCccceeeee---cccCCCCCceEEEEEccccccccCCCCCEEEE
Confidence            45556666666666 488999999999999999988764332211   11269999999999998        7899999


Q ss_pred             EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc-----
Q 009203          292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK-----  366 (540)
Q Consensus       292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----  366 (540)
                      +    +.|++|+|||+.++   ..+..+..   |...|.+++|+|.++.+|++|+.|++|++||+++++......     
T Consensus       162 ~----s~D~tv~~Wd~~~~---~~~~~~~~---~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~  231 (393)
T 4gq1_A          162 V----GDDCTLIIWRLTDE---GPILAGYP---LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV  231 (393)
T ss_dssp             E----ETTSEEEEEEEETT---EEEEEEEE---CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C
T ss_pred             E----ECCCeEEEEECCCC---ceeeeecC---CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc
Confidence            9    99999999999875   23333332   457799999999444689999999999999999876422111     


Q ss_pred             ---------------eeecccCCcceeEEEec-cCCCEEEEEeCCCeEEEEECCCCCeeeeecc----------------
Q 009203          367 ---------------ALHRNLHSSAVMGVAGM-QQKQIVLSAGADKRIIGFDAGVGRADFKHQI----------------  414 (540)
Q Consensus       367 ---------------~~~~~~~~~~v~~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------  414 (540)
                                     .....+|...+.++.|+ +++..|++++.|+.+++||+..+........                
T Consensus       232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~  311 (393)
T 4gq1_A          232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQG  311 (393)
T ss_dssp             SCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEE
T ss_pred             ccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccc
Confidence                           01124578889999986 7999999999999999999987654322110                


Q ss_pred             ---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcE
Q 009203          415 ---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVI  491 (540)
Q Consensus       415 ---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i  491 (540)
                         ........+.|.. ...++++|+.||.|++||+.++.....       ..+|..+|.+++|+|||++||+++.+| +
T Consensus       312 ~~~~~~~~~~~~~~~~-~~~~~~sgs~Dg~V~lwd~~~~~~~~~-------~~~~~~~V~svafspdG~~LA~as~~G-v  382 (393)
T 4gq1_A          312 ISLFPSLLGACPHPRY-MDYFATAHSQHGLIQLINTYEKDSNSI-------PIQLGMPIVDFCWHQDGSHLAIATEGS-V  382 (393)
T ss_dssp             ECSSCCSSCCEECSSC-TTEEEEEETTTTEEEEEETTCTTCCEE-------EEECSSCEEEEEECTTSSEEEEEESSE-E
T ss_pred             ccccCcceeEEEccCC-CCEEEEEECCCCEEEEEECCCCcEEEE-------ecCCCCcEEEEEEcCCCCEEEEEeCCC-e
Confidence               1111122333322 226788999999999999998876443       245778999999999999999998777 6


Q ss_pred             EEEecc
Q 009203          492 HLFDIR  497 (540)
Q Consensus       492 ~iwd~~  497 (540)
                      .+|.+.
T Consensus       383 ~lvrL~  388 (393)
T 4gq1_A          383 LLTRLM  388 (393)
T ss_dssp             EEEEEG
T ss_pred             EEEEEe
Confidence            666654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=5.9e-29  Score=229.91  Aligned_cols=284  Identities=10%  Similarity=0.058  Sum_probs=186.0

Q ss_pred             eEEEEEecCCC--cEEEEEeCCceEEEEEcCCC---CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          226 LRSLSLNPVNE--QLFVTSALDGVIRLWQLQSR---GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       226 V~~l~~spd~~--~~l~tg~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      +.++.|-.-+.  ..+++++. ..|++|+..+.   +...++        .+|+.+|..+.|.||-.-|+...-  +.=.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~--~~~~  110 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW--------HFAEVPVLQIVPVPDVYNLVCVAL--GNLE  110 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE--------ECCSSCEEEECCCTTCCSCEEEEE--CSSS
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE--------eccCceeEEEEEcCcccceeeeee--cccc
Confidence            56777755222  15667764 58999999987   334444        478888999999997553333200  1111


Q ss_pred             eEEEEecCCCCC--ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe--cCCcEEEEecCC-CCCccccceeecccCCc
Q 009203          301 QISVLNLNKTKG--RACVTFLDDKPHVKGIINSIIFLPWENPCFATGG--SDHAVVLWSERD-AEDSWKPKALHRNLHSS  375 (540)
Q Consensus       301 ~i~vwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~  375 (540)
                      .-.++-+.-...  ........+  .|...|.++   + +++++.+++  .|+.|++|++.. ++.     .....+|..
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~--g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~-----~~s~~~~~~  179 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKS--GNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGG-----KENQFLMPP  179 (356)
T ss_dssp             EEEEEEECC------CCEEEEEE--EEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCE-----EEEEEECCC
T ss_pred             ccceEEEEECCCccccccEEEeC--CCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCce-----eeeeccCCC
Confidence            112222211110  000111111  122234443   4 666666644  589999999954 542     122245888


Q ss_pred             ceeEEEecc---CCCEEEEEeCCCeEEEEECCCCCeeeeecc----CccEEEEeecCCCCCceEE------------EEE
Q 009203          376 AVMGVAGMQ---QKQIVLSAGADKRIIGFDAGVGRADFKHQI----ESKCMSVLPNPCDFNLFMV------------QTG  436 (540)
Q Consensus       376 ~v~~l~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l------------~~~  436 (540)
                      .++.++|++   ++..|++++.|++|++||+.+++++..+..    ...+.+++|+|++   .++            ++|
T Consensus       180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG---~~lvs~s~~~~~w~laSG  256 (356)
T 2w18_A          180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG---LLFIVLSHPCAKESESLR  256 (356)
T ss_dssp             SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT---EEEEEEC-----------
T ss_pred             ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC---CEEEEeccCCCcceeecc
Confidence            999999999   789999999999999999999998777542    2345567788876   443            678


Q ss_pred             cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccccee-
Q 009203          437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF-  515 (540)
Q Consensus       437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~-  515 (540)
                      +.|++|++||..++....... +. ...+|...+.+..++  +.++++|+.|++|+|||+.+  ++++.++.+|...+. 
T Consensus       257 s~D~tIklWd~~tgk~l~v~~-~~-~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t--Gk~l~tL~gH~~~vvs  330 (356)
T 2w18_A          257 SPVFQLIVINPKTTLSVGVML-YC-LPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL--GQCTALLPPVSDQHWS  330 (356)
T ss_dssp             -CCEEEEEEETTTTEEEEEEE-EC-CCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT--CSEEEEECCC--CCCC
T ss_pred             CCCcEEEEEECCCCEEEEEEE-ee-ccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC--CcEEEEecCCCCCeEE
Confidence            899999999999876532211 00 124566555555554  88999999999999999998  889999999987665 


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          516 KAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       516 ~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .++|+|||++|++|+.|++|+|||+
T Consensus       331 ~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          331 FVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCcEEEecC
Confidence            5899999999999999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.6e-29  Score=240.14  Aligned_cols=258  Identities=7%  Similarity=0.008  Sum_probs=197.4

Q ss_pred             eEEecCCCCeEEEeccc---hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC---------CCcceeecccc
Q 009203          200 LVRTSASPATIHCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR---------GSGASLLSTTD  267 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~---------~~~~~~~~~~~  267 (540)
                      .+++++.|++|++|+..   .+..-....|.++.|+|+    +++|+.|++|++|+....         +.+....    
T Consensus        50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~----  121 (343)
T 3lrv_A           50 VCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE----  121 (343)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE----
T ss_pred             EEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEee----
Confidence            58889999999999764   222222577889999984    999999999999987632         2111111    


Q ss_pred             cCCCCCCCCceeEEEec--CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEE
Q 009203          268 CLSPKHRRWPEDIAWHP--QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATG  345 (540)
Q Consensus       268 ~~~~~h~~~V~~~~~~~--~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  345 (540)
                         .+|...|.+++|+|  ++++|+++    +.|+.|++||+.++   ........  ++...|.+++|+| ++.+|++|
T Consensus       122 ---~~~~~~v~~~~~~~~~~~~~l~s~----s~dg~i~~wd~~~~---~~~~~~~~--~~~~~i~~~~~~p-dg~~lasg  188 (343)
T 3lrv_A          122 ---VDSANEIIYMYGHNEVNTEYFIWA----DNRGTIGFQSYEDD---SQYIVHSA--KSDVEYSSGVLHK-DSLLLALY  188 (343)
T ss_dssp             ---CCCSSCEEEEECCC---CCEEEEE----ETTCCEEEEESSSS---CEEEEECC--CSSCCCCEEEECT-TSCEEEEE
T ss_pred             ---cCCCCCEEEEEcCCCCCCCEEEEE----eCCCcEEEEECCCC---cEEEEEec--CCCCceEEEEECC-CCCEEEEE
Confidence               36778899999999  99999999    99999999999976   33444433  3455799999999 99999999


Q ss_pred             ecCCcEEEEecCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec------cCccE
Q 009203          346 GSDHAVVLWSERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ------IESKC  418 (540)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~  418 (540)
                      +.||.|++||+++++..    ...... |...|++++|+|+|.+|++++. +.|++||+++++.+....      .....
T Consensus       189 ~~dg~i~iwd~~~~~~~----~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQA----SSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGT  263 (343)
T ss_dssp             CTTSCEEEEESSCTTSC----CEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CC
T ss_pred             cCCCEEEEEECCCCCCC----ccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccc
Confidence            99999999999998752    112234 8999999999999999999994 599999999887654322      11111


Q ss_pred             EEEeecCCCCCceEEEEEcC-CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC---CCCEEEEEeCCCcEEEE
Q 009203          419 MSVLPNPCDFNLFMVQTGTP-GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP---DGLYITSGSADPVIHLF  494 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~sg~~dg~i~iw  494 (540)
                      .+++|+|++   .+|++++. |+.|++|++.........           .++..++|++   ++..|++++.||.+.++
T Consensus       264 ~~~~~~~~g---~~l~~~s~~d~~i~v~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          264 VTYDIDDSG---KNMIAYSNESNSLTIYKFDKKTKNWTK-----------DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EEEEECTTS---SEEEEEETTTTEEEEEEECTTTCSEEE-----------EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             eEEEECCCC---CEEEEecCCCCcEEEEEEcccccceEe-----------cCceeEecCccccccceeEEEecCCceEEE
Confidence            468999987   68999888 999999999765532211           4577888988   88999999999999888


Q ss_pred             ecc
Q 009203          495 DIR  497 (540)
Q Consensus       495 d~~  497 (540)
                      -..
T Consensus       330 ~~~  332 (343)
T 3lrv_A          330 LKT  332 (343)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            655

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=2.8e-27  Score=240.89  Aligned_cols=313  Identities=9%  Similarity=0.034  Sum_probs=228.2

Q ss_pred             eEEecCCCCeEEEeccc-----hhcc-cccCceEEEEEecCCCcEEEEEeCCceEEEEEc--CCCCCcceeecccccCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSS-LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQL--QSRGSGASLLSTTDCLSP  271 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~-~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~--~~~~~~~~~~~~~~~~~~  271 (540)
                      .+++++.|++|.+|+..     ..+. +|.  +.+++|+|| |++|++++.|++|++||+  .+++.+.++.        
T Consensus       151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--------  219 (543)
T 1nir_A          151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIK--------  219 (543)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEE--------
T ss_pred             EEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEe--------
Confidence            45667789999999765     2344 443  899999996 999999999999999999  6666555442        


Q ss_pred             CCCCCceeEEEec----CCCeEEEEeecCC-CCCeEEEEecCCCCCceeEEeecCCC--------CcccceeEEEEeCCC
Q 009203          272 KHRRWPEDIAWHP----QGNSLFSAHTADS-GDSQISVLNLNKTKGRACVTFLDDKP--------HVKGIINSIIFLPWE  338 (540)
Q Consensus       272 ~h~~~V~~~~~~~----~~~~l~s~~~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~p~~  338 (540)
                       +...+..++|+|    +|++|+++    + .+++|.+||..++   +++..+...+        +....+.++.++|.+
T Consensus       220 -~g~~p~~va~sp~~~~dg~~l~v~----~~~~~~v~v~D~~t~---~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~  291 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDRYTIAG----AYWPPQFAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH  291 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTTEEEEE----EEESSEEEEEETTTC---CEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred             -cCCCcceEEeCCCcCCCCCEEEEE----EccCCeEEEEecccc---ccceeecccCcccCccccccCCceEEEEECCCC
Confidence             234578999999    99999988    5 5899999999886   4455444311        122368999999945


Q ss_pred             CCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeeeecc---
Q 009203          339 NPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFKHQI---  414 (540)
Q Consensus       339 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---  414 (540)
                      +.++++...++.|.+||+.+.+..   . .....+...+.+++|+|+|+++++++ .+++|.+||+.+++++.....   
T Consensus       292 ~~~~vs~~~~g~i~vvd~~~~~~l---~-~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~  367 (543)
T 1nir_A          292 PEFIVNVKETGKVLLVNYKDIDNL---T-VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT  367 (543)
T ss_dssp             SEEEEEETTTTEEEEEECTTSSSC---E-EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             CEEEEEECCCCeEEEEEecCCCcc---e-eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence            556677788999999999887642   2 11122566788999999999877654 588999999999988665442   


Q ss_pred             --CccEEEEeecCCCCCceEEEEEc-CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-----
Q 009203          415 --ESKCMSVLPNPCDFNLFMVQTGT-PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-----  486 (540)
Q Consensus       415 --~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-----  486 (540)
                        ......+ ++|++.  .+++++. .|++|.+||+.+.......+...+.+..|...+..++|+|+|++|++++     
T Consensus       368 ph~g~g~~~-~~p~~g--~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~  444 (543)
T 1nir_A          368 PHPGRGANF-VHPKYG--PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD  444 (543)
T ss_dssp             BCCTTCEEE-EETTTE--EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSS
T ss_pred             CCCCCCccc-CCCCCc--cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCC
Confidence              1223333 456531  5677775 6899999999873211111112235566777889999999999999987     


Q ss_pred             --CCCcEEEEeccCCCCccc-ccc--------cccccceeEEEEcCCCCEEEEEE-----cCCcEEEEeC
Q 009203          487 --ADPVIHLFDIRYSANKPS-QSI--------RAHQKRVFKAVWHYSHPLLISIS-----SDLNIGLHKI  540 (540)
Q Consensus       487 --~dg~i~iwd~~~~~~~~~-~~~--------~~h~~~i~~l~~s~~~~~l~s~~-----~dg~v~iw~l  540 (540)
                        .+++|.|||+.+.  +.. ..+        ..+...+..+.|+|+|+.|+++.     .|+.|.|||.
T Consensus       445 ~~~~~~v~v~d~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          445 ARISQSVAVFDLKNL--DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             HHHHTCEEEEETTCT--TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred             cccCceEEEEECCCC--CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence              2679999999984  333 332        35567899999999999877663     4799999984

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=9.9e-27  Score=232.04  Aligned_cols=262  Identities=10%  Similarity=0.105  Sum_probs=209.3

Q ss_pred             eEEecCCCCeEEEeccc-----h-----hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccC
Q 009203          200 LVRTSASPATIHCHTSN-----H-----VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL  269 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~-----~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~  269 (540)
                      .++.+..++.|++|+..     .     .+.+|.+.|++++|+|+ +.++++++.|+.|++||+.+++....+       
T Consensus       136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~~~~~~~~~~-------  207 (433)
T 3bws_A          136 LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDLKTLAYKATV-------  207 (433)
T ss_dssp             EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEETTTCCEEEEE-------
T ss_pred             EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEEECCCceEEEEE-------
Confidence            35566678889999764     2     35689999999999995 999999999999999999987766555       


Q ss_pred             CCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe---
Q 009203          270 SPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG---  346 (540)
Q Consensus       270 ~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---  346 (540)
                       ..|...+.+++|+|+++.++++   ++.++.|++||+.++   ..+..+..    ...+.+++|+| ++.++++++   
T Consensus       208 -~~~~~~~~~~~~~~~~~~l~~~---~~~~~~i~~~d~~~~---~~~~~~~~----~~~~~~~~~~~-~g~~l~~~~~~~  275 (433)
T 3bws_A          208 -DLTGKWSKILLYDPIRDLVYCS---NWISEDISVIDRKTK---LEIRKTDK----IGLPRGLLLSK-DGKELYIAQFSA  275 (433)
T ss_dssp             -ECSSSSEEEEEEETTTTEEEEE---ETTTTEEEEEETTTT---EEEEECCC----CSEEEEEEECT-TSSEEEEEEEES
T ss_pred             -cCCCCCeeEEEEcCCCCEEEEE---ecCCCcEEEEECCCC---cEEEEecC----CCCceEEEEcC-CCCEEEEEECCC
Confidence             3677889999999999988544   168999999999876   44555543    34599999999 998888887   


Q ss_pred             -----cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEE-EEEeCCCeEEEEECCCCCeeeeeccCccEEE
Q 009203          347 -----SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIV-LSAGADKRIIGFDAGVGRADFKHQIESKCMS  420 (540)
Q Consensus       347 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  420 (540)
                           .|+.|++||+.+++.    ...  ..|...+.+++|+|+++.+ ++++.|+.|++||+.+++.+........+.+
T Consensus       276 ~~~~~~dg~i~~~d~~~~~~----~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~  349 (433)
T 3bws_A          276 SNQESGGGRLGIYSMDKEKL----IDT--IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNT  349 (433)
T ss_dssp             CTTCSCCEEEEEEETTTTEE----EEE--EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             CccccCCCeEEEEECCCCcE----Eee--ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCe
Confidence                 488999999998764    111  2356688999999999755 5668899999999999888777777788899


Q ss_pred             EeecCCCCCceEEEEEcC---------------CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE
Q 009203          421 VLPNPCDFNLFMVQTGTP---------------GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG  485 (540)
Q Consensus       421 ~~~~~~~~~~~~l~~~~~---------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg  485 (540)
                      ++++|++   .++++++.               ||.|++||+.+++.....       . +...+.+++|+|+|++|+++
T Consensus       350 ~~~s~dg---~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~-------~-~~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          350 IALSPDG---KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW-------E-AGNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             EEECTTS---SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE-------E-CSSSEEEEEECTTSCEEEEE
T ss_pred             EEEcCCC---CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe-------c-CCCCCceEEEcCCCCEEEEE
Confidence            9999987   56666655               579999999887643322       1 23478999999999999887


Q ss_pred             eC-CCcEEEEeccC
Q 009203          486 SA-DPVIHLFDIRY  498 (540)
Q Consensus       486 ~~-dg~i~iwd~~~  498 (540)
                      +. |+.|++|+++.
T Consensus       419 ~~~d~~i~v~~~~~  432 (433)
T 3bws_A          419 DFLDHQIRVYRRDG  432 (433)
T ss_dssp             ETTTTEEEEEEETT
T ss_pred             ECCCCeEEEEEecC
Confidence            75 99999999873

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=1.5e-27  Score=220.48  Aligned_cols=259  Identities=10%  Similarity=0.030  Sum_probs=161.5

Q ss_pred             CCeEEEeccc--------hhcccccCceEEEEEecCCCcEEEEEeCCceE-EEEEcCCCCC----cceeecccccCCCCC
Q 009203          207 PATIHCHTSN--------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVI-RLWQLQSRGS----GASLLSTTDCLSPKH  273 (540)
Q Consensus       207 d~~i~~~~~~--------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v-~iw~~~~~~~----~~~~~~~~~~~~~~h  273 (540)
                      ..+|++|+..        +.+.+|+.+|..+.|.||..++++.+-.+-.+ .++-+.-...    ...+..      .+|
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s------~g~  135 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK------SGN  135 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE------EEE
T ss_pred             cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe------CCC
Confidence            3566777332        45677777777777777655555554332211 1222211111    111111      123


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC--CCCCEEEEEecCCcE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP--WENPCFATGGSDHAV  351 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i  351 (540)
                      ...|.++   ++|+++.++.  .+.|+.|++|++...  .+.+..+..   |...+..++|+|  .++.+|++|+.|++|
T Consensus       136 ~~~v~~l---~~g~lv~ss~--~g~d~~V~~~~~s~d--G~~~~s~~~---~~~~v~~l~fs~~~g~~~~LaSgS~D~TI  205 (356)
T 2w18_A          136 IKAVLGL---TKRRLVSSSG--TLSDQQVEVMTFAED--GGGKENQFL---MPPEETILTFAEVQGMQEALLGTTIMNNI  205 (356)
T ss_dssp             EEEEEEE---TTTEEEEEES--SSTTCEEEEEEECTT--SCEEEEEEE---CCCSSCEEEEEEEETSTTEEEEEETTSEE
T ss_pred             eEEEEec---CCCcEEEecc--cCCCCcEEEEEECCC--Cceeeeecc---CCCceeeEEeeccCCCCceEEEecCCCcE
Confidence            3333333   4555555540  136999999998542  133333333   345566666665  467999999999999


Q ss_pred             EEEecCCCCCccccceeec-ccCCcceeEEEeccCCCEE------------EEEeCCCeEEEEECCCCCeeeeec-----
Q 009203          352 VLWSERDAEDSWKPKALHR-NLHSSAVMGVAGMQQKQIV------------LSAGADKRIIGFDAGVGRADFKHQ-----  413 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~-----  413 (540)
                      +|||+.++++   ...+.. ..+...+.+++|+|+|.++            ++|+.|++|++||..+++.+....     
T Consensus       206 kIWDl~TGk~---l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~  282 (356)
T 2w18_A          206 VIWNLKTGQL---LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPP  282 (356)
T ss_dssp             EEEETTTCCE---EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCT
T ss_pred             EEEECCCCcE---EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccC
Confidence            9999999986   334421 1123467888999999887            567789999999999988754321     


Q ss_pred             -cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeE-EEEEcCCCCEEEEEeCCCcE
Q 009203          414 -IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALI-NQSWSPDGLYITSGSADPVI  491 (540)
Q Consensus       414 -~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~sg~~dg~i  491 (540)
                       ......+..++  +   .++++|+.|++|+|||+.+++...       ++.+|...+. +++|||||++|++|+.|++|
T Consensus       283 Gh~~~~lsg~~s--g---~~lASgS~DgTIkIWDl~tGk~l~-------tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI  350 (356)
T 2w18_A          283 GQAGRFLEGDVK--D---HCAAAILTSGTIAIWDLLLGQCTA-------LLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI  350 (356)
T ss_dssp             TCCCCEEEEEEE--T---TEEEEEETTSCEEEEETTTCSEEE-------EECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred             CCcceeEccccC--C---CEEEEEcCCCcEEEEECCCCcEEE-------EecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence             11123333333  1   478999999999999999988544       3456776655 68999999999999999999


Q ss_pred             EEEec
Q 009203          492 HLFDI  496 (540)
Q Consensus       492 ~iwd~  496 (540)
                      +|||+
T Consensus       351 klWd~  355 (356)
T 2w18_A          351 FVYHY  355 (356)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            99996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.3e-26  Score=229.05  Aligned_cols=274  Identities=11%  Similarity=0.060  Sum_probs=207.5

Q ss_pred             eEEEecc--c-------hhcccccCceEEEEEecC-------------CCcEEEEEeCC------ceEEEEEcCCCCCcc
Q 009203          209 TIHCHTS--N-------HVSSLHKRKLRSLSLNPV-------------NEQLFVTSALD------GVIRLWQLQSRGSGA  260 (540)
Q Consensus       209 ~i~~~~~--~-------~~~~~h~~~V~~l~~spd-------------~~~~l~tg~~d------g~v~iw~~~~~~~~~  260 (540)
                      ++++|+.  .       ..+.+|...+..+++++.             .+..++.++.+      +.|++||+.. ....
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~  172 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQF  172 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCE
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCE
Confidence            8999987  3       226788888888887751             03445555443      7999999974 3334


Q ss_pred             eeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC---CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC
Q 009203          261 SLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD---SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW  337 (540)
Q Consensus       261 ~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  337 (540)
                      .+        .+|...|.+++|+|+|+.|+++    +.+   ..|++||+.+++   ... +..   +.+.+.+++|+| 
T Consensus       173 ~l--------~~~~~~v~~~~~Spdg~~la~~----s~~~~~~~i~~~d~~tg~---~~~-l~~---~~~~~~~~~~sp-  232 (415)
T 2hqs_A          173 VV--------HRSPQPLMSPAWSPDGSKLAYV----TFESGRSALVIQTLANGA---VRQ-VAS---FPRHNGAPAFSP-  232 (415)
T ss_dssp             EE--------EEESSCEEEEEECTTSSEEEEE----ECTTSSCEEEEEETTTCC---EEE-EEC---CSSCEEEEEECT-
T ss_pred             EE--------eCCCCcceeeEEcCCCCEEEEE----EecCCCcEEEEEECCCCc---EEE-eec---CCCcccCEEEcC-
Confidence            44        3577889999999999999998    655   499999999763   233 322   356799999999 


Q ss_pred             CCCEEE-EEecCCc--EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CC--eEEEEECCCCCeeee
Q 009203          338 ENPCFA-TGGSDHA--VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DK--RIIGFDAGVGRADFK  411 (540)
Q Consensus       338 ~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~  411 (540)
                      +++.|+ +++.++.  |++||+.+++.    ..+  ..|...+.+++|+|||+.|++++. ++  .|++||+.+++....
T Consensus       233 dg~~la~~~~~~g~~~i~~~d~~~~~~----~~l--~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l  306 (415)
T 2hqs_A          233 DGSKLAFALSKTGSLNLYVMDLASGQI----RQV--TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI  306 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCE----EEC--CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCCE----EeC--cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE
Confidence            898777 6666654  99999988763    333  347788999999999999998886 44  688889988775444


Q ss_pred             eccCccEEEEeecCCCCCceEEEEEcCC---CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC
Q 009203          412 HQIESKCMSVLPNPCDFNLFMVQTGTPG---RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD  488 (540)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d  488 (540)
                      ......+.++.|+|++   .+|++++.+   ..|++||+.+++...        +..+. .+.+++|+|+|++|++++.+
T Consensus       307 ~~~~~~~~~~~~spdG---~~l~~~~~~~g~~~i~~~d~~~~~~~~--------l~~~~-~~~~~~~spdg~~l~~~s~~  374 (415)
T 2hqs_A          307 TWEGSQNQDADVSSDG---KFMVMVSSNGGQQHIAKQDLATGGVQV--------LSSTF-LDETPSLAPNGTMVIYSSSQ  374 (415)
T ss_dssp             CCSSSEEEEEEECTTS---SEEEEEEECSSCEEEEEEETTTCCEEE--------CCCSS-SCEEEEECTTSSEEEEEEEE
T ss_pred             ecCCCcccCeEECCCC---CEEEEEECcCCceEEEEEECCCCCEEE--------ecCCC-CcCCeEEcCCCCEEEEEEcC
Confidence            4445677889999988   567666553   589999999876421        22333 78999999999999988877


Q ss_pred             C---cEEEEeccCCCCcccccccccccceeEEEEcCCCC
Q 009203          489 P---VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP  524 (540)
Q Consensus       489 g---~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~  524 (540)
                      +   .|++||+.   +.....+..|.+.|.+++|+|...
T Consensus       375 ~~~~~l~~~d~~---g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          375 GMGSVLNLVSTD---GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             TTEEEEEEEETT---SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             CCccEEEEEECC---CCcEEEeeCCCCCCcCCccccccc
Confidence            7   79999987   456778888999999999999754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=5.9e-27  Score=231.47  Aligned_cols=282  Identities=11%  Similarity=0.024  Sum_probs=209.4

Q ss_pred             cCceEEEEEecCCCcEEEEEe----CCc----eEEEEEc--CCCCCcceeecccccCCCCCCCCceeEEEec--------
Q 009203          223 KRKLRSLSLNPVNEQLFVTSA----LDG----VIRLWQL--QSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--------  284 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~----~dg----~v~iw~~--~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--------  284 (540)
                      ...|...+|.+++..++++|+    .||    .|+|||+  .+++.+.....      .+|...+..+++++        
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~  135 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSY------KVNKQWLRYAGHTASDEVFEKL  135 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEE------EECGGGHHHHHHHHHHHHHHHH
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEE------EcChhHHHHHHHHHHHHHHHHH
Confidence            357888889887667888886    467    8999999  88775422111      36666777777764        


Q ss_pred             ------CCCeEEEEeecCCCC---CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC---cEE
Q 009203          285 ------QGNSLFSAHTADSGD---SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH---AVV  352 (540)
Q Consensus       285 ------~~~~l~s~~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~  352 (540)
                            .+..++.+... ..+   +.|++||+....    ...+..   |...+.+++|+| +++.|++++.++   .|+
T Consensus       136 ~g~~~~~~~~l~~~s~~-~~~~~~~~i~i~d~~g~~----~~~l~~---~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~  206 (415)
T 2hqs_A          136 TGIKGAFRTRIAYVVQT-NGGQFPYELRVSDYDGYN----QFVVHR---SPQPLMSPAWSP-DGSKLAYVTFESGRSALV  206 (415)
T ss_dssp             HSSCCCTTCEEEEEEEC-SSSSCCEEEEEEETTSCS----CEEEEE---ESSCEEEEEECT-TSSEEEEEECTTSSCEEE
T ss_pred             cCCCCcCCCEEEEEEec-CCCCccceEEEEcCCCCC----CEEEeC---CCCcceeeEEcC-CCCEEEEEEecCCCcEEE
Confidence                  25566665221 112   799999998432    233332   457799999999 999999999875   999


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCCCEEE-EEeCCC--eEEEEECCCCCeeeeeccCccEEEEeecCCCCC
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVL-SAGADK--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFN  429 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (540)
                      +||+.+++.    ..+  ..|...+.+++|+|||+.|+ +++.++  .|++||+.+++..........+.++.|+|++  
T Consensus       207 ~~d~~tg~~----~~l--~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg--  278 (415)
T 2hqs_A          207 IQTLANGAV----RQV--ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDS--  278 (415)
T ss_dssp             EEETTTCCE----EEE--ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTS--
T ss_pred             EEECCCCcE----EEe--ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCC--
Confidence            999998874    333  34778899999999999887 566555  4999999988875555556778899999988  


Q ss_pred             ceEEEEEcC-CC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeccCCCCcc
Q 009203          430 LFMVQTGTP-GR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD---PVIHLFDIRYSANKP  503 (540)
Q Consensus       430 ~~~l~~~~~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~  503 (540)
                       .+|++++. ++  .|++||+.++....        +..+...+.+++|+|+|++|++++.+   +.|++||+.+  +..
T Consensus       279 -~~l~~~s~~~g~~~i~~~d~~~~~~~~--------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~--~~~  347 (415)
T 2hqs_A          279 -QNLAFTSDQAGRPQVYKVNINGGAPQR--------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGV  347 (415)
T ss_dssp             -SEEEEEECTTSSCEEEEEETTSSCCEE--------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--CCE
T ss_pred             -CEEEEEECCCCCcEEEEEECCCCCEEE--------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC--CCE
Confidence             56766665 44  68888988765321        23355678899999999999988764   5899999987  333


Q ss_pred             cccccccccceeEEEEcCCCCEEEEEEcCC---cEEEEeC
Q 009203          504 SQSIRAHQKRVFKAVWHYSHPLLISISSDL---NIGLHKI  540 (540)
Q Consensus       504 ~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg---~v~iw~l  540 (540)
                       ..+..|. .+.+++|+|+|++|++++.|+   .|++||+
T Consensus       348 -~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          348 -QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             -EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             -EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence             3455554 799999999999999988877   7999985

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=2.3e-24  Score=207.56  Aligned_cols=283  Identities=10%  Similarity=0.071  Sum_probs=190.1

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC-CeEEEEecC--CCCC
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD-SQISVLNLN--KTKG  312 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d-~~i~vwd~~--~~~~  312 (540)
                      ..++++++.|+.|++|++........+ ..     ..|...+.+++|+|+|++|+++    +.+ +.|.+|++.  ++. 
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~spdg~~l~~~----~~~~~~v~~~~~~~~~~~-   73 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLT-QV-----VDVPGQVQPMVVSPDKRYLYVG----VRPEFRVLAYRIAPDDGA-   73 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEE-EE-----EECSSCCCCEEECTTSSEEEEE----ETTTTEEEEEEECTTTCC-
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEe-ee-----EecCCCCceEEECCCCCEEEEe----ecCCCeEEEEEecCCCCc-
Confidence            344555578999999999643221111 11     1355678899999999988887    554 999999998  432 


Q ss_pred             ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEE
Q 009203          313 RACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLS  391 (540)
Q Consensus       313 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  391 (540)
                      ...+..+..    ...+.+++|+| ++++|++++ .++.|.+||+..+..   ............+.+++|+|+|+++++
T Consensus        74 ~~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~  145 (343)
T 1ri6_A           74 LTFAAESAL----PGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLP---VGVVDVVEGLDGCHSANISPDNRTLWV  145 (343)
T ss_dssp             EEEEEEEEC----SSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEE---EEEEEEECCCTTBCCCEECTTSSEEEE
T ss_pred             eeecccccc----CCCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcc---ccccccccCCCCceEEEECCCCCEEEE
Confidence            123333332    23688999999 888776665 488899999953321   111111123446899999999998888


Q ss_pred             Ee-CCCeEEEEECCC-CCeee------eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc
Q 009203          392 AG-ADKRIIGFDAGV-GRADF------KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES  463 (540)
Q Consensus       392 ~~-~dg~i~iwd~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~  463 (540)
                      ++ .++.|++||+.+ ++...      ..........+.|+|++.  .+++++..++.|.+||+................
T Consensus       146 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~--~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~  223 (343)
T 1ri6_A          146 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ--YAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  223 (343)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS--EEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             ecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC--EEEEEeCCCCEEEEEEecCCCCcEEEEeecccc
Confidence            87 899999999987 55422      122345677899999873  244566689999999996422111111001111


Q ss_pred             C---ccccCeEEEEEcCCCCEEEE-EeCCCcEEEEeccCC--CCcccccccccccceeEEEEcCCCCEEEEEE-cCCcEE
Q 009203          464 S---ESQSALINQSWSPDGLYITS-GSADPVIHLFDIRYS--ANKPSQSIRAHQKRVFKAVWHYSHPLLISIS-SDLNIG  536 (540)
Q Consensus       464 ~---~~~~~v~~~~~sp~g~~l~s-g~~dg~i~iwd~~~~--~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~-~dg~v~  536 (540)
                      .   .....+.+++|+|+|++|++ +..++.|.+||+...  ..+.+..+..+.. +.+++|+|+|++|++++ .|+.|.
T Consensus       224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~  302 (343)
T 1ri6_A          224 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHIS  302 (343)
T ss_dssp             CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEE
T ss_pred             CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEE
Confidence            1   11346778999999998774 557899999999831  1234444544444 89999999999888887 689999


Q ss_pred             EEeC
Q 009203          537 LHKI  540 (540)
Q Consensus       537 iw~l  540 (540)
                      +|++
T Consensus       303 v~~~  306 (343)
T 1ri6_A          303 VYEI  306 (343)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9953

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=2.3e-24  Score=230.05  Aligned_cols=279  Identities=11%  Similarity=0.099  Sum_probs=200.9

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCC--CcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRG--SGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      .|.+++|+|| |++|++++. +.|.+||+.++.  ....+        ..|...+.+++|+|||++|+++    + ++.|
T Consensus       110 ~v~~~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l--------~~~~~~~~~~~~SPDG~~la~~----~-~~~i  174 (741)
T 2ecf_A          110 GIVDYQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQL--------THGEGFATDAKLSPKGGFVSFI----R-GRNL  174 (741)
T ss_dssp             ESCCCEECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBC--------CCSSSCEEEEEECTTSSEEEEE----E-TTEE
T ss_pred             CcceeEECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEc--------ccCCcccccccCCCCCCEEEEE----e-CCcE
Confidence            3899999996 888888886 899999998872  22223        3566779999999999999987    4 5699


Q ss_pred             EEEecCCCCCceeEEeecCCCCc-------------ccceeEEEEeCCCCCEEEEEecCC--------------------
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHV-------------KGIINSIIFLPWENPCFATGGSDH--------------------  349 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~~~l~s~~~dg--------------------  349 (540)
                      ++||+.++   ............             ...+.+++|+| |+++|++++.|+                    
T Consensus       175 ~~~d~~~g---~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~  250 (741)
T 2ecf_A          175 WVIDLASG---RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIE  250 (741)
T ss_dssp             EEEETTTT---EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred             EEEecCCC---CEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence            99999875   333333221000             00147899999 999999987765                    


Q ss_pred             -------------cEEEEecCC-CCCccccceeec-ccCCcceeEEEeccCCCEEEEEeC-----CCeEEEEECCCCCee
Q 009203          350 -------------AVVLWSERD-AEDSWKPKALHR-NLHSSAVMGVAGMQQKQIVLSAGA-----DKRIIGFDAGVGRAD  409 (540)
Q Consensus       350 -------------~i~iwd~~~-~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~  409 (540)
                                   .|++||+.+ ++.    ..+.. ..|...+.+++| |||+.|++++.     +..|++||+.+++..
T Consensus       251 ~~~~~~g~~~~~~~l~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~  325 (741)
T 2ecf_A          251 QRYPAAGDANVQVKLGVISPAEQAQT----QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR  325 (741)
T ss_dssp             EECCBTTSCCCEEEEEEECSSTTCCC----EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE
T ss_pred             eecCCCCCCCCeeEEEEEECCCCCce----EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE
Confidence                         789999988 763    22221 247788999999 99999997764     567999999998875


Q ss_pred             eeeccCc-----cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEE-EEcCCCCEEE
Q 009203          410 FKHQIES-----KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ-SWSPDGLYIT  483 (540)
Q Consensus       410 ~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~  483 (540)
                      .......     .+..+.|+|++   .++++++.+|.++||.+..... ..      .+..|...+..+ .|+|+|+.|+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~spdg---~~~~~~~~~g~~~l~~~~~~~~-~~------~l~~~~~~v~~~~~~s~dg~~l~  395 (741)
T 2ecf_A          326 VLAHETSPTWVPLHNSLRFLDDG---SILWSSERTGFQHLYRIDSKGK-AA------ALTHGNWSVDELLAVDEKAGLAY  395 (741)
T ss_dssp             EEEEEECSSCCCCCSCCEECTTS---CEEEEECTTSSCEEEEECSSSC-EE------ESCCSSSCEEEEEEEETTTTEEE
T ss_pred             EEEEcCCCCcCCcCCceEECCCC---eEEEEecCCCccEEEEEcCCCC-ee------eeeecceEEEeEeEEeCCCCEEE
Confidence            5433221     23467899987   5888888999888887763222 22      345566778887 5999998775


Q ss_pred             -EEeCCC--cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC----CcEEEEe
Q 009203          484 -SGSADP--VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD----LNIGLHK  539 (540)
Q Consensus       484 -sg~~dg--~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d----g~v~iw~  539 (540)
                       +++.++  .++||++... +.....+.. ...+..++|+|||++|+....+    ..+.+|+
T Consensus       396 ~~~~~~~~~~~~l~~~~~~-g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~  456 (741)
T 2ecf_A          396 FRAGIESARESQIYAVPLQ-GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR  456 (741)
T ss_dssp             EEECSSCTTCBEEEEEETT-CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred             EEEeCCCCceEEEEEEEcC-CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence             455555  8999998753 344455554 5568899999999988766443    4567765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.7e-24  Score=231.09  Aligned_cols=292  Identities=12%  Similarity=0.039  Sum_probs=205.3

Q ss_pred             cCceEEEEEecCCCcEEEEEeC-Cc-----eEEEEEcCCCCCcceeecccccC-------------CCCC---CCCceeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSAL-DG-----VIRLWQLQSRGSGASLLSTTDCL-------------SPKH---RRWPEDI  280 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~-dg-----~v~iw~~~~~~~~~~~~~~~~~~-------------~~~h---~~~V~~~  280 (540)
                      ...|.+++|+|| |++|++++. |+     .|.+||+.+++....+.......             ...+   ...|.++
T Consensus        36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            457999999996 899999988 88     89999999876543332110000             0000   0237899


Q ss_pred             EEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCC
Q 009203          281 AWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAE  360 (540)
Q Consensus       281 ~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  360 (540)
                      +|+|||++|+++    +. +.|++||+.++... ....+..   +...+.+++|+| +|++|++++ ++.|++||+.+++
T Consensus       115 ~~SpDg~~l~~~----~~-~~i~~~d~~~~~~~-~~~~l~~---~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~  183 (741)
T 2ecf_A          115 QWSPDAQRLLFP----LG-GELYLYDLKQEGKA-AVRQLTH---GEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGR  183 (741)
T ss_dssp             EECTTSSEEEEE----ET-TEEEEEESSSCSTT-SCCBCCC---SSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTE
T ss_pred             EECCCCCEEEEE----eC-CcEEEEECCCCCcc-eEEEccc---CCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCC
Confidence            999999999997    44 99999999876100 1222322   356799999999 999999887 4689999999876


Q ss_pred             CccccceeecccCCc----------------ceeEEEeccCCCEEEEEeCCC----------------------------
Q 009203          361 DSWKPKALHRNLHSS----------------AVMGVAGMQQKQIVLSAGADK----------------------------  396 (540)
Q Consensus       361 ~~~~~~~~~~~~~~~----------------~v~~l~~s~~~~~l~~~~~dg----------------------------  396 (540)
                      .    ..+.. .+..                .+.+++|+|||++|++++.|+                            
T Consensus       184 ~----~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  258 (741)
T 2ecf_A          184 Q----MQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD  258 (741)
T ss_dssp             E----EECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred             E----EEecc-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence            3    22211 1221                247899999999999988765                            


Q ss_pred             -----eEEEEECCC-CCeeeee---ccCccEEEEeecCCCCCceEEEEEc-----CCCeEEEEECCCCcceeeeeccccc
Q 009203          397 -----RIIGFDAGV-GRADFKH---QIESKCMSVLPNPCDFNLFMVQTGT-----PGRQLRLYDIRLRQTEIHAFGWKQE  462 (540)
Q Consensus       397 -----~i~iwd~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~-----~dg~v~i~d~~~~~~~~~~~~~~~~  462 (540)
                           .|++||+.+ ++.....   .....+..+.| |++   .+|++++     .+..|++||+.+++.......   .
T Consensus       259 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg---~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~  331 (741)
T 2ecf_A          259 ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP---QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE---T  331 (741)
T ss_dssp             CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET---TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE---E
T ss_pred             CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC---CEEEEEEecccCCeEEEEEEECCCCceEEEEEc---C
Confidence                 789999988 7764432   24466788999 987   4565543     356899999998774332211   0


Q ss_pred             cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEE-EEcCCCCEEEE-EEcCC--cEEEE
Q 009203          463 SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKA-VWHYSHPLLIS-ISSDL--NIGLH  538 (540)
Q Consensus       463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l-~~s~~~~~l~s-~~~dg--~v~iw  538 (540)
                      .......+..++|+|||+++++++.||.+.||.++.. +. ...+..|...|..+ .|+|+|+.|+. ++.|+  .++||
T Consensus       332 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~  409 (741)
T 2ecf_A          332 SPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIY  409 (741)
T ss_dssp             CSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred             CCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence            0011113467899999999999999998888887742 34 67777788888887 59999987754 44555  89999


Q ss_pred             eC
Q 009203          539 KI  540 (540)
Q Consensus       539 ~l  540 (540)
                      ++
T Consensus       410 ~~  411 (741)
T 2ecf_A          410 AV  411 (741)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=3.3e-24  Score=201.64  Aligned_cols=257  Identities=11%  Similarity=0.076  Sum_probs=187.1

Q ss_pred             EEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCC-CCCceeEEee
Q 009203          241 TSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNK-TKGRACVTFL  319 (540)
Q Consensus       241 tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~-~~~~~~~~~~  319 (540)
                      .++.|+.|++||+.+++... +        ..|...|.+++|+|+|++|+++    + ++.|.+||+.+ +.   .....
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~--------~~~~~~v~~~~~spdg~~l~~~----~-~~~i~~~d~~~~~~---~~~~~   79 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-V--------WQTPELFEAPNWSPDGKYLLLN----S-EGLLYRLSLAGDPS---PEKVD   79 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-E--------EEESSCCEEEEECTTSSEEEEE----E-TTEEEEEESSSCCS---CEECC
T ss_pred             CCCcceeEEEEeCCCCceee-e--------ccCCcceEeeEECCCCCEEEEE----c-CCeEEEEeCCCCCC---ceEec
Confidence            34678999999998876432 2        2466789999999999999997    4 88999999997 63   23333


Q ss_pred             cCCCCcccceeEEEEeCCCCCEEEEEec--CCcEEEE--ecCCCCCccccceeecccCCcceeEEEeccCCCEEE-EEeC
Q 009203          320 DDKPHVKGIINSIIFLPWENPCFATGGS--DHAVVLW--SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVL-SAGA  394 (540)
Q Consensus       320 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~-~~~~  394 (540)
                      ..  ++...+.+++|+| ++.+|++++.  ++.+.||  ++.++..    ..+.   +...+..++|+|+++.|+ +++.
T Consensus        80 ~~--~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~----~~~~---~~~~~~~~~~spdg~~l~~~~~~  149 (297)
T 2ojh_A           80 TG--FATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGTP----RLMT---KNLPSYWHGWSPDGKSFTYCGIR  149 (297)
T ss_dssp             CT--TCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCCC----EECC---SSSSEEEEEECTTSSEEEEEEEE
T ss_pred             cc--cccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCce----EEee---cCCCccceEECCCCCEEEEEECC
Confidence            32  2346689999999 9999999883  3445555  5555431    2222   233488999999999887 6778


Q ss_pred             CCeEEEEEC--CCCCeeeeeccCccEEEEeecCCCCCceEEEE-EcCCCeEEEEECCCCcceeeeeccccccCccccCeE
Q 009203          395 DKRIIGFDA--GVGRADFKHQIESKCMSVLPNPCDFNLFMVQT-GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALI  471 (540)
Q Consensus       395 dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~  471 (540)
                      ++.+++|++  .++...........+.++.|+|++   .+++. +..++.+++|++........      .+..|...+.
T Consensus       150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~  220 (297)
T 2ojh_A          150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG---RWIYFNSSRTGQMQIWRVRVDGSSVE------RITDSAYGDW  220 (297)
T ss_dssp             TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS---SEEEEEECTTSSCEEEEEETTSSCEE------ECCCCSEEEE
T ss_pred             CCceEEEEEECCCCcceEcccCCCccccceECCCC---CEEEEEecCCCCccEEEECCCCCCcE------EEecCCcccC
Confidence            998999985  445544445556678899999987   45554 44688999998863222222      3345667889


Q ss_pred             EEEEcCCCCEEEEEeCC-----------CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203          472 NQSWSPDGLYITSGSAD-----------PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       472 ~~~~sp~g~~l~sg~~d-----------g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      +++|+|+|++|++++.+           +.|++||+.+.....+..+.+|...+.+++|+|+|++|++++.|.
T Consensus       221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            99999999999988765           569999998743334555557888999999999999998887664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=1.5e-23  Score=222.55  Aligned_cols=279  Identities=12%  Similarity=0.133  Sum_probs=196.1

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ..|.+++|+|| +.++++  .++.|++||+.+++... +        ..+...+.+++|+|||+.|+++     .++.|+
T Consensus        82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~~-l--------~~~~~~~~~~~~SpdG~~la~~-----~~~~i~  144 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVTY-L--------FDTNEETASLDFSPVGDRVAYV-----RNHNLY  144 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEEE-E--------ECCTTCCTTCEECTTSSEEEEE-----ETTEEE
T ss_pred             cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceEE-c--------cCCcccccCCcCCCCCCEEEEE-----ECCeEE
Confidence            56999999997 655555  35999999998765322 2        1345668899999999999986     579999


Q ss_pred             EEecCC-----CCCceeEEeecCCCC-----------cccceeEEEEeCCCCCEEEEEe---------------------
Q 009203          304 VLNLNK-----TKGRACVTFLDDKPH-----------VKGIINSIIFLPWENPCFATGG---------------------  346 (540)
Q Consensus       304 vwd~~~-----~~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~~l~s~~---------------------  346 (540)
                      +||+.+     +..   .........           +...+.+++|+| ++++|++++                     
T Consensus       145 v~~~~~~~~~~g~~---~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~  220 (706)
T 2z3z_A          145 IARGGKLGEGMSRA---IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAES  220 (706)
T ss_dssp             EEECBCTTSCCCCC---EESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred             EEecCcccccCCCc---EEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence            999987     532   332222100           001258999999 999999987                     


Q ss_pred             ------------cCCcEEEEecCCCCCccccceee-cccCCcceeEEEeccCCCEEEEEeCCC-----eEEEEECCCCCe
Q 009203          347 ------------SDHAVVLWSERDAEDSWKPKALH-RNLHSSAVMGVAGMQQKQIVLSAGADK-----RIIGFDAGVGRA  408 (540)
Q Consensus       347 ------------~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~  408 (540)
                                  .+..|++||+.+++.    ..+. ...|...+.+++|+|||+.|++++.++     .|++||+.+++.
T Consensus       221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~  296 (706)
T 2z3z_A          221 KPLYYPMAGTPSHHVTVGIYHLATGKT----VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF  296 (706)
T ss_dssp             EEECCCBTTSCCCEEEEEEEETTTTEE----EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE
T ss_pred             EEeeCCCCCCCCCeeEEEEEECCCCce----EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce
Confidence                        346799999998763    2221 124677899999999999999988776     899999998833


Q ss_pred             ee-ee--ccCc---cEEEEeecC--CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEE-EEEcCCC
Q 009203          409 DF-KH--QIES---KCMSVLPNP--CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALIN-QSWSPDG  479 (540)
Q Consensus       409 ~~-~~--~~~~---~~~~~~~~~--~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~g  479 (540)
                      .. ..  ....   .+..+.|+|  ++   .++++++.++.+++|++........      .+..+...+.. ++|+|+|
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~sp~~dg---~~l~~~~~~g~~~l~~~~~~~~~~~------~l~~~~~~v~~~~~~spdg  367 (706)
T 2z3z_A          297 VRTLFVETDKHYVEPLHPLTFLPGSNN---QFIWQSRRDGWNHLYLYDTTGRLIR------QVTKGEWEVTNFAGFDPKG  367 (706)
T ss_dssp             EEEEEEEECSSCCCCCSCCEECTTCSS---EEEEEECTTSSCEEEEEETTSCEEE------ECCCSSSCEEEEEEECTTS
T ss_pred             eeEEEEccCCCeECccCCceeecCCCC---EEEEEEccCCccEEEEEECCCCEEE------ecCCCCeEEEeeeEEcCCC
Confidence            22 21  1111   124578888  77   6888899999999998762222222      33456667776 7999999


Q ss_pred             CEEEEEeC-CC----cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC----CcEEEEeC
Q 009203          480 LYITSGSA-DP----VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD----LNIGLHKI  540 (540)
Q Consensus       480 ~~l~sg~~-dg----~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d----g~v~iw~l  540 (540)
                      +.|+.++. ++    .|+.||+.+  +. ...+. |...+.+++|+|||++|+.++.+    +.|++||+
T Consensus       368 ~~l~~~~~~~~~~~~~l~~~d~~~--~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          368 TRLYFESTEASPLERHFYCIDIKG--GK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             SEEEEEESSSCTTCBEEEEEETTC--CC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             CEEEEEecCCCCceEEEEEEEcCC--CC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            98766554 44    556666654  33 33333 56679999999999988776544    56999984

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=1.1e-23  Score=214.42  Aligned_cols=280  Identities=11%  Similarity=0.022  Sum_probs=209.1

Q ss_pred             EEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec--
Q 009203          230 SLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL--  307 (540)
Q Consensus       230 ~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~--  307 (540)
                      +|+|+ +.++++++.|++|.+||..+++.+.++..       ++.  +..++|+|+|++|+++    +.++.|.+||+  
T Consensus       144 ~~~p~-~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-------g~~--~~~v~~spdg~~l~v~----~~d~~V~v~D~~~  209 (543)
T 1nir_A          144 DLDLP-NLFSVTLRDAGQIALVDGDSKKIVKVIDT-------GYA--VHISRMSASGRYLLVI----GRDARIDMIDLWA  209 (543)
T ss_dssp             CCCGG-GEEEEEEGGGTEEEEEETTTCCEEEEEEC-------STT--EEEEEECTTSCEEEEE----ETTSEEEEEETTS
T ss_pred             ccCCC-CEEEEEEcCCCeEEEEECCCceEEEEEec-------Ccc--cceEEECCCCCEEEEE----CCCCeEEEEECcC
Confidence            37885 88999999999999999999887766631       333  7899999999999999    88899999999  


Q ss_pred             CCCCCceeEEeecCCCCcccceeEEEEeCC---CCCEEEEEe-cCCcEEEEecCCCCCccccceeeccc--------C-C
Q 009203          308 NKTKGRACVTFLDDKPHVKGIINSIIFLPW---ENPCFATGG-SDHAVVLWSERDAEDSWKPKALHRNL--------H-S  374 (540)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~--------~-~  374 (540)
                      .++   .++..+..    ...+.+++|+|.   +++++++++ .+++|.+||..+++++.   .+...+        | .
T Consensus       210 ~t~---~~~~~i~~----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~---~i~~~g~~~~~~~~~~~  279 (543)
T 1nir_A          210 KEP---TKVAEIKI----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ---IVSTRGMTVDTQTYHPE  279 (543)
T ss_dssp             SSC---EEEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE---EEECCEECSSSCCEESC
T ss_pred             CCC---cEEEEEec----CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce---eecccCcccCccccccC
Confidence            654   45555543    345899999982   566777766 58999999999887632   222111        2 2


Q ss_pred             cceeEEEeccCCCE-EEEEeCCCeEEEEECCCCCeee--eeccCccEEEEeecCCCCCceE-EEEEcCCCeEEEEECCCC
Q 009203          375 SAVMGVAGMQQKQI-VLSAGADKRIIGFDAGVGRADF--KHQIESKCMSVLPNPCDFNLFM-VQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       375 ~~v~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~v~i~d~~~~  450 (540)
                      ..+.++.++|++.. +++...++.|.+||+.+.+.+.  ..........+.|+|++   ++ ++++..+++|.+||+.++
T Consensus       280 ~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg---~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          280 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSH---RYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTS---CEEEEEEGGGTEEEEEETTTT
T ss_pred             CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCC---CEEEEEecCCCeEEEEECCCC
Confidence            37899999997654 5666778999999998866543  34445567788999987   44 455667899999999988


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCC-CCEEEEEe-CCCcEEEEeccCCC-----CcccccccccccceeEEEEcCCC
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPD-GLYITSGS-ADPVIHLFDIRYSA-----NKPSQSIRAHQKRVFKAVWHYSH  523 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~sg~-~dg~i~iwd~~~~~-----~~~~~~~~~h~~~i~~l~~s~~~  523 (540)
                      +......   .....|.+....+ ++|+ |.+++++. .|++|.+||+.+..     .+.+.++.+|.+.+..++|+|+|
T Consensus       357 ~l~~~i~---~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg  432 (543)
T 1nir_A          357 RLSALVD---VGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS  432 (543)
T ss_dssp             EEEEEEE---CSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred             eEEEeec---cCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC
Confidence            7543221   0112354433333 5777 66677775 68999999998621     56788889998889999999999


Q ss_pred             CEEEEEE-------cCCcEEEEeC
Q 009203          524 PLLISIS-------SDLNIGLHKI  540 (540)
Q Consensus       524 ~~l~s~~-------~dg~v~iw~l  540 (540)
                      ++|++++       .+++|.|||+
T Consensus       433 ~~l~v~~~~~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          433 SHLYVDTTFNPDARISQSVAVFDL  456 (543)
T ss_dssp             CEEEECCTTCSSHHHHTCEEEEET
T ss_pred             CcEEEecCCCCCcccCceEEEEEC
Confidence            9999987       3789999995

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=2.7e-23  Score=199.21  Aligned_cols=279  Identities=8%  Similarity=-0.012  Sum_probs=190.1

Q ss_pred             EEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecC
Q 009203          229 LSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN  308 (540)
Q Consensus       229 l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~  308 (540)
                      ..|.++++.++++++.++.|.+||..+++....+.        .+...+ .++|+|+|++|+++.   ..++.|.+||+.
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~~-~~~~s~dg~~l~~~~---~~~~~i~~~d~~   70 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQIT--------LGYDFV-DTAITSDCSNVVVTS---DFCQTLVQIETQ   70 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEE--------CCCCEE-EEEECSSSCEEEEEE---STTCEEEEEECS
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEE--------ccCCcc-eEEEcCCCCEEEEEe---CCCCeEEEEECC
Confidence            34566556778899999999999999887655542        223445 899999999766651   458899999999


Q ss_pred             CCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC---cEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203          309 KTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH---AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ  385 (540)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  385 (540)
                      ++..  ....+..   +..+..+++|+| ++++++++..++   .|.+||+.+++.   ...+.   ....+.+++|+|+
T Consensus        71 ~~~~--~~~~~~~---~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~---~~~~~---~~~~~~~~~~spd  138 (331)
T 3u4y_A           71 LEPP--KVVAIQE---GQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKF---ISTIP---IPYDAVGIAISPN  138 (331)
T ss_dssp             SSSC--EEEEEEE---CSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEE---EEEEE---CCTTEEEEEECTT
T ss_pred             CCce--eEEeccc---CCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCe---EEEEE---CCCCccceEECCC
Confidence            8732  1333332   234444499999 999888555543   899999998764   22221   3445789999999


Q ss_pred             CCEEEEE-eCCCe-EEEEECCCCCee-----eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203          386 KQIVLSA-GADKR-IIGFDAGVGRAD-----FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG  458 (540)
Q Consensus       386 ~~~l~~~-~~dg~-i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  458 (540)
                      |++++++ ..++. |.+|++.....+     ...........+.++|++.  .+++++..++.|.+||+.+++...... 
T Consensus       139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~--~l~v~~~~~~~v~v~d~~~~~~~~~~~-  215 (331)
T 3u4y_A          139 GNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGN--FAFVANLIGNSIGILETQNPENITLLN-  215 (331)
T ss_dssp             SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSS--EEEEEETTTTEEEEEECSSTTSCEEEE-
T ss_pred             CCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCC--EEEEEeCCCCeEEEEECCCCcccceee-
Confidence            9866554 55578 999998764432     1223345678899999873  255666778999999998776511000 


Q ss_pred             cccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcc--ccccccc----cc---ceeEEEEcCCCCEEEE
Q 009203          459 WKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKP--SQSIRAH----QK---RVFKAVWHYSHPLLIS  528 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~--~~~~~~h----~~---~i~~l~~s~~~~~l~s  528 (540)
                         .+. ....+..++|+|+|++|++++ .++.|.+||+.+  ++.  +..+..+    ..   ....++|+|||++|++
T Consensus       216 ---~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  289 (331)
T 3u4y_A          216 ---AVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS--GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI  289 (331)
T ss_dssp             ---EEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT--TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred             ---ecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC--CceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence               111 235678899999999776554 578899999987  333  2222211    22   2356899999998765


Q ss_pred             EE-cCCcEEEEeC
Q 009203          529 IS-SDLNIGLHKI  540 (540)
Q Consensus       529 ~~-~dg~v~iw~l  540 (540)
                      ++ .++.|.+||+
T Consensus       290 ~~~~~~~v~v~d~  302 (331)
T 3u4y_A          290 SANISRELKVFTI  302 (331)
T ss_dssp             EETTTTEEEEEET
T ss_pred             ecCCCCcEEEEEe
Confidence            55 4579999986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=2.6e-23  Score=229.56  Aligned_cols=298  Identities=7%  Similarity=-0.014  Sum_probs=217.0

Q ss_pred             CeEEEeccc----hhcccccCce-------EEEEEecCCCcEEEEEeCC------ceEEEEEcCCCCCcceeecc-----
Q 009203          208 ATIHCHTSN----HVSSLHKRKL-------RSLSLNPVNEQLFVTSALD------GVIRLWQLQSRGSGASLLST-----  265 (540)
Q Consensus       208 ~~i~~~~~~----~~~~~h~~~V-------~~l~~spd~~~~l~tg~~d------g~v~iw~~~~~~~~~~~~~~-----  265 (540)
                      ..|.+|+..    ..+.+|...+       .+++|+|| |+++++++.+      ..|.+|++..+.... +...     
T Consensus        80 ~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpD-g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~~~~  157 (1045)
T 1k32_A           80 ADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD-GNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLGPATHI  157 (1045)
T ss_dssp             EEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTT-CCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSCSCSEE
T ss_pred             CeEEEEECCCCCeEEcccCCCcccccccccccccCCCC-CEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCCCccee
Confidence            467777543    3467888888       99999997 6788887754      357777776543211 0000     


Q ss_pred             --------------------------------------cccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203          266 --------------------------------------TDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL  307 (540)
Q Consensus       266 --------------------------------------~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~  307 (540)
                                                            .... .+|...+.++.|+++ .+++++    +.++.+.+|.+
T Consensus       158 ~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d-~l~~~~----~~dg~~~l~~~  231 (1045)
T 1k32_A          158 LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH-RIYFIT----DIDGFGQIYST  231 (1045)
T ss_dssp             EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETT-EEEEEE----CTTSSCEEEEE
T ss_pred             eeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC-cCCCCcccceEEeCC-EEEEEE----eccCceEEEEE
Confidence                                                  0001 367788999999988 566676    78899999987


Q ss_pred             CCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc---------cCCccee
Q 009203          308 NKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN---------LHSSAVM  378 (540)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~v~  378 (540)
                      ....  .....+..   +. .+..++|+| ++..|+++. ++.|++||+.....    ..+...         .|...+.
T Consensus       232 ~~~g--~~~~~l~~---~~-~~~~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l----~~l~~~~~~~~~~~~~~~~~v~  299 (1045)
T 1k32_A          232 DLDG--KDLRKHTS---FT-DYYPRHLNT-DGRRILFSK-GGSIYIFNPDTEKI----EKIEIGDLESPEDRIISIPSKF  299 (1045)
T ss_dssp             ETTS--CSCEECCC---CC-SSCEEEEEE-SSSCEEEEE-TTEEEEECTTTCCE----EECCCCCCCBCCSEEEECGGGG
T ss_pred             eCCC--CcceEecC---CC-CcceeeEcC-CCCEEEEEe-CCEEEEecCCceEe----eeeccCcccccccccccccccc
Confidence            6421  12333332   22 366789999 999888874 89999999944331    111110         1345799


Q ss_pred             EEEec-cCCCEEEEEeCCCeEEEEECCCCCeeeeeccCc-cEEEEeecCCCCCceEEEEEcCCCeEE-EEECCCCcceee
Q 009203          379 GVAGM-QQKQIVLSAGADKRIIGFDAGVGRADFKHQIES-KCMSVLPNPCDFNLFMVQTGTPGRQLR-LYDIRLRQTEIH  455 (540)
Q Consensus       379 ~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~v~-i~d~~~~~~~~~  455 (540)
                      +++|+ |+|+.|++++ ++.|++|++..+.......... .+..+.|+ ++   ..++.++.++.+. +||+.++...  
T Consensus       300 ~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg---~~l~~~s~~~~l~~~~d~~~~~~~--  372 (1045)
T 1k32_A          300 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TK---VAFIHGTREGDFLGIYDYRTGKAE--  372 (1045)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SE---EEEEEEETTEEEEEEEETTTCCEE--
T ss_pred             eeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CC---CeEEEEECCCceEEEEECCCCCce--
Confidence            99999 9999999888 7899999998877654434444 67788898 65   6788877788898 9999876532  


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC--
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL--  533 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg--  533 (540)
                            .+.+|...+..++|||||++|++++.++.|++||+.+  ++....+.+|.+.+.+++|+|||++|++++.++  
T Consensus       373 ------~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t--g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~  444 (1045)
T 1k32_A          373 ------KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET--GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG  444 (1045)
T ss_dssp             ------ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS
T ss_pred             ------EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC--CceEEeccCCCCCccceEECCCCCeEEEEecCccc
Confidence                  1235677899999999999999999999999999987  566656667888999999999999999887754  


Q ss_pred             --------cEEEEeC
Q 009203          534 --------NIGLHKI  540 (540)
Q Consensus       534 --------~v~iw~l  540 (540)
                              .|++||+
T Consensus       445 ~~~~~~~~~i~l~d~  459 (1045)
T 1k32_A          445 ETDGYVMQAIHVYDM  459 (1045)
T ss_dssp             TTCSCCEEEEEEEET
T ss_pred             cccCCCCCeEEEEEC
Confidence                    8999985

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=5.6e-24  Score=226.47  Aligned_cols=285  Identities=11%  Similarity=-0.000  Sum_probs=196.9

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC---CceeEEEecCCCeEEEEeecC----
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR---WPEDIAWHPQGNSLFSAHTAD----  296 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~s~~~~~----  296 (540)
                      ..+.+++|+|| |+++++ +.||+|++||+.+++....+        .+|..   .|.+++|+|||++|+++...+    
T Consensus        17 ~~~~~~~~spd-g~~~~~-~~dg~i~~~d~~~g~~~~~~--------~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~   86 (723)
T 1xfd_A           17 IHDPEAKWISD-TEFIYR-EQKGTVRLWNVETNTSTVLI--------EGKKIESLRAIRYEISPDREYALFSYNVEPIYQ   86 (723)
T ss_dssp             CCCCCCCBSSS-SCBCCC-CSSSCEEEBCGGGCCCEEEE--------CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSS
T ss_pred             ccccccEEcCC-CcEEEE-eCCCCEEEEECCCCcEEEEe--------ccccccccccceEEECCCCCEEEEEecCcccee
Confidence            34788999996 777766 78999999999988765444        23333   589999999999999982211    


Q ss_pred             -CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCc
Q 009203          297 -SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       297 -~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                       +.++.|.+||+.++..    ..+.....+...+..++|+| +|+.|++++. +.|++||+.+++.    ..+.. .+..
T Consensus        87 ~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~----~~~~~-~~~~  155 (723)
T 1xfd_A           87 HSYTGYYVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQA----IRVVS-TGKE  155 (723)
T ss_dssp             SCCCSEEEEEESSSCCC----EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCC----EEEEC-CCBT
T ss_pred             ecceeeEEEEECCCCce----EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCce----EEEec-CCCC
Confidence             1138899999998632    23333233445588999999 9999999886 7999999998764    22221 1222


Q ss_pred             ------------------ceeEEEeccCCCEEEEEeCCC----------------------------------eEEEEEC
Q 009203          376 ------------------AVMGVAGMQQKQIVLSAGADK----------------------------------RIIGFDA  403 (540)
Q Consensus       376 ------------------~v~~l~~s~~~~~l~~~~~dg----------------------------------~i~iwd~  403 (540)
                                        .+.+++|+|||+.|++++.|+                                  .|++||+
T Consensus       156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~  235 (723)
T 1xfd_A          156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (723)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             CceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence                              237899999999999987553                                  7999999


Q ss_pred             CCCCeeeeecc-------CccEEEEeecCCCCCceEEEEEc----CCCeEEEEECCCCcceeeeeccccccCccccCe--
Q 009203          404 GVGRADFKHQI-------ESKCMSVLPNPCDFNLFMVQTGT----PGRQLRLYDIRLRQTEIHAFGWKQESSESQSAL--  470 (540)
Q Consensus       404 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~----~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v--  470 (540)
                      .+++.......       ...+..+.|+|++   .++++..    .+..|++||+.+++......      ..+...+  
T Consensus       236 ~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg---~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~------~~~~~~~~~  306 (723)
T 1xfd_A          236 NGPTHDLEMMPPDDPRMREYYITMVKWATST---KVAVTWLNRAQNVSILTLCDATTGVCTKKHE------DESEAWLHR  306 (723)
T ss_dssp             SSSCCCEECCCCCCGGGSSEEEEEEEESSSS---EEEEEEEETTSCEEEEEEEETTTCCEEEEEE------EECSSCCCC
T ss_pred             CCCceeEEeeCCccCCCccceeEEEEEeCCC---eEEEEEEcCCCCeEEEEEEeCCCCcceEEEE------eccCCEEec
Confidence            98875333222       4567889999988   5665553    23579999998876433211      1122233  


Q ss_pred             --EEEEEcCCCCEEEE--EeCCC------cEEEEe-ccCCCCc--ccccccccccceeE-EEEcCCCCEEEEEEcC---C
Q 009203          471 --INQSWSPDGLYITS--GSADP------VIHLFD-IRYSANK--PSQSIRAHQKRVFK-AVWHYSHPLLISISSD---L  533 (540)
Q Consensus       471 --~~~~~sp~g~~l~s--g~~dg------~i~iwd-~~~~~~~--~~~~~~~h~~~i~~-l~~s~~~~~l~s~~~d---g  533 (540)
                        ..++|+|||+.|+.  +..++      .|++|| ...  +.  ....+..+...+.. ++|+|||+.|+..+.+   +
T Consensus       307 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  384 (723)
T 1xfd_A          307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN--SSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPR  384 (723)
T ss_dssp             CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC--SSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTT
T ss_pred             cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC--CCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCc
Confidence              37899999997775  44566      466677 333  22  14445433334544 6999999998776655   7


Q ss_pred             cEEEEeC
Q 009203          534 NIGLHKI  540 (540)
Q Consensus       534 ~v~iw~l  540 (540)
                      .++||++
T Consensus       385 ~~~l~~~  391 (723)
T 1xfd_A          385 RRQLYSA  391 (723)
T ss_dssp             CCEEEEE
T ss_pred             ceEEEEE
Confidence            8999974

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.6e-22  Score=192.33  Aligned_cols=272  Identities=8%  Similarity=-0.024  Sum_probs=185.6

Q ss_pred             EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEE-EEEeCCceEEEEEcCCCCC-cceeecccccCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLF-VTSALDGVIRLWQLQSRGS-GASLLSTTDCLSPKH  273 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l-~tg~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~h  273 (540)
                      +.+...++.|.+|+..     ..+..+...+ +++|+|| +++| +++..++.|.+||..+++. ...+        ..+
T Consensus        13 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~--------~~~   82 (331)
T 3u4y_A           13 IVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIETQLEPPKVVAI--------QEG   82 (331)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSS-SCEEEEEESTTCEEEEEECSSSSCEEEEE--------EEC
T ss_pred             EEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEECCCCceeEEec--------ccC
Confidence            4556678899999754     2344556667 9999997 6655 4555589999999998875 3333        233


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCC-C--eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEE-EEEecCC
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGD-S--QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCF-ATGGSDH  349 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d-~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg  349 (540)
                      ..+..+++|+|+|++|+++    ..+ +  .|.+||+.++   ..+..+..    ...+.+++|+| +++++ +++..++
T Consensus        83 ~~~~~~~~~s~dg~~l~~~----~~~~~~~~i~v~d~~~~---~~~~~~~~----~~~~~~~~~sp-dg~~l~~~~~~~~  150 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTV----TGLNHPFNMQSYSFLKN---KFISTIPI----PYDAVGIAISP-NGNGLILIDRSSA  150 (331)
T ss_dssp             SSCCCCEEECTTSSEEEEC----CCSSSSCEEEEEETTTT---EEEEEEEC----CTTEEEEEECT-TSSCEEEEEETTT
T ss_pred             CCCccceEECCCCCEEEEe----cCCCCcccEEEEECCCC---CeEEEEEC----CCCccceEECC-CCCEEEEEecCCC
Confidence            3444459999999999954    444 2  9999999876   44554443    23478999999 87755 5555668


Q ss_pred             c-EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEE-eCCCeEEEEECCCCCe---eeeeccCccEEEEeec
Q 009203          350 A-VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA-GADKRIIGFDAGVGRA---DFKHQIESKCMSVLPN  424 (540)
Q Consensus       350 ~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~  424 (540)
                      . |.+|++.......... .........+.+++|+|+|++++++ ..++.|.+||+.+++.   +........+..+.++
T Consensus       151 ~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~s  229 (331)
T 3u4y_A          151 NTVRRFKIDADGVLFDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVS  229 (331)
T ss_dssp             TEEEEEEECTTCCEEEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEEC
T ss_pred             ceEEEEEECCCCcEeecC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEEC
Confidence            8 9999998654321111 1111244568999999999966555 4688999999998887   6666666777889999


Q ss_pred             CCCCCceEE-EEEcCCCeEEEEECCCCcceee-eeccc-cccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccC
Q 009203          425 PCDFNLFMV-QTGTPGRQLRLYDIRLRQTEIH-AFGWK-QESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRY  498 (540)
Q Consensus       425 ~~~~~~~~l-~~~~~dg~v~i~d~~~~~~~~~-~~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~  498 (540)
                      |++   .++ ++...++.|.+||+.+++.... .+... ............++|+|||++|++++ .++.|.+||+..
T Consensus       230 pdg---~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          230 RDG---STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             TTS---SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             CCC---CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            988   444 4455678899999988764111 11000 00011122235689999999886555 567999999985

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=8.5e-23  Score=217.34  Aligned_cols=299  Identities=11%  Similarity=0.074  Sum_probs=201.8

Q ss_pred             CCCCeEEEeccc-----hhcccccC---ceEEEEEecCCCcEEEEEeCC---------ceEEEEEcCCCCCcceeecccc
Q 009203          205 ASPATIHCHTSN-----HVSSLHKR---KLRSLSLNPVNEQLFVTSALD---------GVIRLWQLQSRGSGASLLSTTD  267 (540)
Q Consensus       205 ~~d~~i~~~~~~-----~~~~~h~~---~V~~l~~spd~~~~l~tg~~d---------g~v~iw~~~~~~~~~~~~~~~~  267 (540)
                      +.|++|++|+..     .++.+|..   .|.+++|||| |++|++++.+         +.+.+||+.+++. ..+...  
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~--  109 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP--  109 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCT--
T ss_pred             eCCCCEEEEECCCCcEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceeeEEEEECCCCce-EeccCC--
Confidence            467899999764     34566665   4999999996 8999998764         7888999998764 222111  


Q ss_pred             cCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC-c--------------ccceeEE
Q 009203          268 CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH-V--------------KGIINSI  332 (540)
Q Consensus       268 ~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~--------------~~~v~~~  332 (540)
                         .+|...+..++|+|||+.|+.+    + ++.|++||+.++..   ......... .              .+.+.++
T Consensus       110 ---~~~~~~~~~~~~SPdG~~la~~----~-~~~i~~~~~~~g~~---~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~  178 (723)
T 1xfd_A          110 ---EVSNAKLQYAGWGPKGQQLIFI----F-ENNIYYCAHVGKQA---IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (723)
T ss_dssp             ---TCCSCCCSBCCBCSSTTCEEEE----E-TTEEEEESSSSSCC---EEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             ---ccccccccccEECCCCCEEEEE----E-CCeEEEEECCCCce---EEEecCCCCCceECcccceeEEEEeccCcceE
Confidence               3566678999999999999997    4 47999999997633   333322100 0              0123789


Q ss_pred             EEeCCCCCEEEEEecCC----------------------------------cEEEEecCCCCCccccceeec----ccCC
Q 009203          333 IFLPWENPCFATGGSDH----------------------------------AVVLWSERDAEDSWKPKALHR----NLHS  374 (540)
Q Consensus       333 ~~~p~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~----~~~~  374 (540)
                      +|+| +++.|++++.|+                                  .|++||+.+++..   ..+..    ..+.
T Consensus       179 ~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~---~~l~~~~~~~~~~  254 (723)
T 1xfd_A          179 WWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD---LEMMPPDDPRMRE  254 (723)
T ss_dssp             EECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC---EECCCCCCGGGSS
T ss_pred             EECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee---EEeeCCccCCCcc
Confidence            9999 999999887553                                  7999999887631   22211    1136


Q ss_pred             cceeEEEeccCCCEEEEEeC----CCeEEEEECCCCCeeeeec--cCccE----EEEeecCCCCCceEEE-EEcCCC---
Q 009203          375 SAVMGVAGMQQKQIVLSAGA----DKRIIGFDAGVGRADFKHQ--IESKC----MSVLPNPCDFNLFMVQ-TGTPGR---  440 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~l~-~~~~dg---  440 (540)
                      ..+.+++|+|||+++++...    +..|++||+.+++......  ....+    ..+.|+|++..  +++ ++..++   
T Consensus       255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~~  332 (723)
T 1xfd_A          255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK--FFFIRAIPQGGRG  332 (723)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS--EEEEEEECCSSSS
T ss_pred             ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe--EEEEEecccCCCc
Confidence            78999999999998877653    3579999999888654432  12222    36789998842  233 355667   


Q ss_pred             ---eEEEEE-CCCCcc-eeeeeccccccCccccCeEE-EEEcCCCCEEEEEeCC---CcEEEEeccCCCCcccccccc--
Q 009203          441 ---QLRLYD-IRLRQT-EIHAFGWKQESSESQSALIN-QSWSPDGLYITSGSAD---PVIHLFDIRYSANKPSQSIRA--  509 (540)
Q Consensus       441 ---~v~i~d-~~~~~~-~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~--  509 (540)
                         .|.+|| ..++.. ...      .+..+...+.. ++|+|||+.|+..+.+   +.++||++..........+..  
T Consensus       333 ~~~~l~~~d~~~~~~~~~~~------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~  406 (723)
T 1xfd_A          333 KFYHITVSSSQPNSSNDNIQ------SITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDL  406 (723)
T ss_dssp             CEEEEEEECSSCCSSSCCCC------BSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTS
T ss_pred             ceeEEEEEeccCCCCcccee------EeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccc
Confidence               566777 333320 011      22222334554 6999999999766554   789999997632223334443  


Q ss_pred             -cccceeEEEEcCCCCEEEEEE
Q 009203          510 -HQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       510 -h~~~i~~l~~s~~~~~l~s~~  530 (540)
                       |...+..++|+|||++|+...
T Consensus       407 ~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          407 VENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             SSSCCCCEEEECTTSSEEEEEC
T ss_pred             cCCCCeEEEEECCCCCEEEEEc
Confidence             667789999999999877653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=2.4e-23  Score=199.90  Aligned_cols=269  Identities=10%  Similarity=0.063  Sum_probs=192.4

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC-CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR-WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      .+|++++.++.|.+||+.+++....+..       ++.. .+..++|+|+|+.++++.   ..++.|.+||+.+++   .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~s~dg~~l~v~~---~~~~~v~~~d~~~~~---~   68 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITI-------ADAGPTPMVPMVAPGGRIAYATV---NKSESLVKIDLVTGE---T   68 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC-------TTCTTCCCCEEECTTSSEEEEEE---TTTTEEEEEETTTCC---E
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEc-------CCCCCCccceEEcCCCCEEEEEe---CCCCeEEEEECCCCC---e
Confidence            4789999999999999998776555431       2222 377899999998665441   678999999998763   3


Q ss_pred             EEeecCCC--CcccceeEEEEeCCCCCEEEEEe------------cCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          316 VTFLDDKP--HVKGIINSIIFLPWENPCFATGG------------SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       316 ~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      +..+....  .+...+.+++|+| ++++++++.            .++.|.+||+.+++.   ...+.   ....+.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~~~~---~~~~~~~~~  141 (337)
T 1pby_B           69 LGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---RKAFE---APRQITMLA  141 (337)
T ss_dssp             EEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---EEEEE---CCSSCCCEE
T ss_pred             EeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcE---EEEEe---CCCCcceeE
Confidence            33333210  0122577899999 998888876            579999999988764   12221   245678899


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC---------------------
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR---------------------  440 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---------------------  440 (540)
                      |+|+|++|+++  ++.|.+||+.+++.............+.++|++..  +++++..++                     
T Consensus       142 ~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (337)
T 1pby_B          142 WARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA--VWNQHESSGVMATPFYTARKDIDPADPTAY  217 (337)
T ss_dssp             ECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC--CCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred             ECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccE--EeeeccCCCceeeeeecccccccccccccc
Confidence            99999988888  67899999998887655443321112356666521  222222222                     


Q ss_pred             --eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEE
Q 009203          441 --QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAV  518 (540)
Q Consensus       441 --~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~  518 (540)
                        .|.+||+.+++....      .+..+...+.+++|+|+|++|+++  ++.|++||+.+  ++.+..+.. ...+.+++
T Consensus       218 ~~~v~~~d~~~~~~~~~------~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~--~~~~~~~~~-~~~~~~~~  286 (337)
T 1pby_B          218 RTGLLTMDLETGEMAMR------EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK--NASIKRVPL-PHSYYSVN  286 (337)
T ss_dssp             EEEEEEEETTTCCEEEE------EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT--TEEEEEEEC-SSCCCEEE
T ss_pred             ccceEEEeCCCCCceEe------ecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC--CcCcceecC-CCceeeEE
Confidence              578999998775421      223455678899999999999988  79999999987  565555553 34688999


Q ss_pred             EcCCCCEEEEEEcCCcEEEEeC
Q 009203          519 WHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       519 ~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |+|+|++|++++.++.|.+||+
T Consensus       287 ~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          287 VSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             ECTTSCEEEEESBSSEEEEEET
T ss_pred             ECCCCCEEEEEcCCCcEEEEEC
Confidence            9999999999999999999985

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=9.3e-22  Score=190.17  Aligned_cols=274  Identities=8%  Similarity=0.036  Sum_probs=197.9

Q ss_pred             cCceEEEEEecCCCcEEEEEeC-------CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          223 KRKLRSLSLNPVNEQLFVTSAL-------DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      ...+..++|+|| +++|++++.       ++.|.+||..+++....+..         ...+..++|+|+|++++++.  
T Consensus        40 ~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---------~~~~~~~~~s~dg~~l~v~~--  107 (353)
T 3vgz_A           40 GKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN---------DLKPFGATINNTTQTLWFGN--  107 (353)
T ss_dssp             ESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE---------SSCCCSEEEETTTTEEEEEE--
T ss_pred             ccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec---------CCCcceEEECCCCCEEEEEe--
Confidence            357889999996 666666653       67899999998876665532         13367899999999655541  


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCc------ccceeEEEEeCCCCCEEEEEe--cCCcEEEEecCCCCCccccce
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHV------KGIINSIIFLPWENPCFATGG--SDHAVVLWSERDAEDSWKPKA  367 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~  367 (540)
                       ..++.|.+||..+++   .+..+......      ...+.+++|+| +++++++++  .++.|.+||+.+++.   ...
T Consensus       108 -~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~---~~~  179 (353)
T 3vgz_A          108 -TVNSAVTAIDAKTGE---VKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKL---KTA  179 (353)
T ss_dssp             -TTTTEEEEEETTTCC---EEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEE---EEE
T ss_pred             -cCCCEEEEEeCCCCe---eEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCce---EEE
Confidence             668999999999873   33333321100      01268899999 888776665  478899999998764   222


Q ss_pred             eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-----CccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203          368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-----ESKCMSVLPNPCDFNLFMVQTGTPGRQL  442 (540)
Q Consensus       368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~v  442 (540)
                      +  ..+...+.+++|+|+|+++++++.++.|.+||+.+++.......     ......+.++|++.  .++++...++.|
T Consensus       180 ~--~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v  255 (353)
T 3vgz_A          180 I--QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ--RAFITDSKAAEV  255 (353)
T ss_dssp             E--CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT--EEEEEESSSSEE
T ss_pred             e--cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC--EEEEEeCCCCEE
Confidence            2  22445688999999999999999999999999999887665443     34567789999873  244555566999


Q ss_pred             EEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcccccccccccceeEEEEcC
Q 009203          443 RLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY  521 (540)
Q Consensus       443 ~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~  521 (540)
                      .+||+.+++......       .  ....+++|+|+|+++++++ .++.|.+||..+  ++.+..+..+ ..+.+++|+|
T Consensus       256 ~~~d~~~~~~~~~~~-------~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~-~~~~~~~~s~  323 (353)
T 3vgz_A          256 LVVDTRNGNILAKVA-------A--PESLAVLFNPARNEAYVTHRQAGKVSVIDAKS--YKVVKTFDTP-THPNSLALSA  323 (353)
T ss_dssp             EEEETTTCCEEEEEE-------C--SSCCCEEEETTTTEEEEEETTTTEEEEEETTT--TEEEEEEECC-SEEEEEEECT
T ss_pred             EEEECCCCcEEEEEE-------c--CCCceEEECCCCCEEEEEECCCCeEEEEECCC--CeEEEEEecC-CCCCeEEEcC
Confidence            999998877533221       1  1125689999999665554 689999999987  6666666543 3689999999


Q ss_pred             CCCEEEEEEcC
Q 009203          522 SHPLLISISSD  532 (540)
Q Consensus       522 ~~~~l~s~~~d  532 (540)
                      +|++|+.+..+
T Consensus       324 dg~~l~v~~~~  334 (353)
T 3vgz_A          324 DGKTLYVSVKQ  334 (353)
T ss_dssp             TSCEEEEEEEC
T ss_pred             CCCEEEEEEcc
Confidence            99977666554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=3.7e-22  Score=192.07  Aligned_cols=298  Identities=9%  Similarity=0.084  Sum_probs=194.7

Q ss_pred             EecCCCCeEEEeccc-----hh--cccccCceEEEEEecCCCcEEEEEeCC-ceEEEEEcC--CCCCcceeecccccCCC
Q 009203          202 RTSASPATIHCHTSN-----HV--SSLHKRKLRSLSLNPVNEQLFVTSALD-GVIRLWQLQ--SRGSGASLLSTTDCLSP  271 (540)
Q Consensus       202 ~~~~~d~~i~~~~~~-----~~--~~~h~~~V~~l~~spd~~~~l~tg~~d-g~v~iw~~~--~~~~~~~~~~~~~~~~~  271 (540)
                      ..++.++.|.+|+..     ..  ...|...+.+++|+|+ +++|++++.+ +.|.+|++.  ++..  ......    .
T Consensus         9 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~--~~~~~~----~   81 (343)
T 1ri6_A            9 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGAL--TFAAES----A   81 (343)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCE--EEEEEE----E
T ss_pred             EeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCce--eecccc----c
Confidence            344568889999652     11  2457788999999996 8878887776 999999997  4332  111111    1


Q ss_pred             CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCc
Q 009203          272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHA  350 (540)
Q Consensus       272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~  350 (540)
                      .+ ..+..++|+|+|++|+++.   ..++.|.+||+..+........+..    ...+.+++|+| +++++++++ .++.
T Consensus        82 ~~-~~~~~~~~s~dg~~l~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~  152 (343)
T 1ri6_A           82 LP-GSLTHISTDHQGQFVFVGS---YNAGNVSVTRLEDGLPVGVVDVVEG----LDGCHSANISP-DNRTLWVPALKQDR  152 (343)
T ss_dssp             CS-SCCSEEEECTTSSEEEEEE---TTTTEEEEEEEETTEEEEEEEEECC----CTTBCCCEECT-TSSEEEEEEGGGTE
T ss_pred             cC-CCCcEEEEcCCCCEEEEEe---cCCCeEEEEECCCCccccccccccC----CCCceEEEECC-CCCEEEEecCCCCE
Confidence            12 2678999999999876651   4589999999953322234444443    23488999999 888877776 8899


Q ss_pred             EEEEecCC-CCCccccc--eeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCC--CCee--eeec-------cC
Q 009203          351 VVLWSERD-AEDSWKPK--ALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGV--GRAD--FKHQ-------IE  415 (540)
Q Consensus       351 i~iwd~~~-~~~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~--~~~~--~~~~-------~~  415 (540)
                      |.+||+.+ +... ...  ... ......+.+++|+|+|+++++++ .++.|.+||+..  +...  ....       ..
T Consensus       153 v~~~d~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~  230 (343)
T 1ri6_A          153 ICLFTVSDDGHLV-AQDPAEVT-TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT  230 (343)
T ss_dssp             EEEEEECTTSCEE-EEEEEEEE-CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred             EEEEEecCCCcee-eecccccc-cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence            99999987 5421 011  111 12345788999999999776555 789999999954  4331  1111       12


Q ss_pred             ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEE
Q 009203          416 SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLF  494 (540)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iw  494 (540)
                      ..+..+.|+|++.  .+++++..++.|.+||+...........   .+..+. .+.+++|+|+|++|++++ .++.|.+|
T Consensus       231 ~~~~~i~~s~dg~--~l~v~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~  304 (343)
T 1ri6_A          231 RWAADIHITPDGR--HLYACDRTASLITVFSVSEDGSVLSKEG---FQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVY  304 (343)
T ss_dssp             CCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSCCEEEEE---EEECSS-SCCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             CCccceEECCCCC--EEEEEecCCCEEEEEEEcCCCCceEEee---eecCCC-ccceEEECCCCCEEEEecCCCCeEEEE
Confidence            3456799999873  2444666899999999983211111110   112222 388999999999888887 68999999


Q ss_pred             eccCCCC--cccccccccccceeEEEEcCCCC
Q 009203          495 DIRYSAN--KPSQSIRAHQKRVFKAVWHYSHP  524 (540)
Q Consensus       495 d~~~~~~--~~~~~~~~h~~~i~~l~~s~~~~  524 (540)
                      +++...+  +.+..+.. .....+++|.++.+
T Consensus       305 ~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          305 EIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred             EEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence            7764223  23333433 23567788876543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=3.3e-22  Score=220.76  Aligned_cols=280  Identities=8%  Similarity=0.025  Sum_probs=218.8

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      .+.+|.+.+.++.|+++  .++++++.|+.++||.+... .....+        ..|. .+..++|+|+|+.|+++    
T Consensus       198 ~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l--------~~~~-~~~~~~~SpDG~~la~~----  262 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKH--------TSFT-DYYPRHLNTDGRRILFS----  262 (1045)
T ss_dssp             EEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEEC--------CCCC-SSCEEEEEESSSCEEEE----
T ss_pred             ECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEe--------cCCC-CcceeeEcCCCCEEEEE----
Confidence            35799999999999984  67788888999999987642 222222        2333 46778999999999986    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCC--------CcccceeEEEEe-CCCCCEEEEEecCCcEEEEecCCCCCccccce
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKP--------HVKGIINSIIFL-PWENPCFATGGSDHAVVLWSERDAEDSWKPKA  367 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  367 (540)
                       .++.|.+||+...    .+..+....        .+...+.+++|+ | ++..|++++ ++.|++|++.++..    ..
T Consensus       263 -~~~~i~~~d~~~~----~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~----~~  331 (1045)
T 1k32_A          263 -KGGSIYIFNPDTE----KIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYV----LK  331 (1045)
T ss_dssp             -ETTEEEEECTTTC----CEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBE----EE
T ss_pred             -eCCEEEEecCCce----EeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCce----EE
Confidence             4899999999432    233333211        023468999999 9 999998887 78999999987752    22


Q ss_pred             eecccCCc-ceeEEEeccCCCEEEEEeCCCeEE-EEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEE
Q 009203          368 LHRNLHSS-AVMGVAGMQQKQIVLSAGADKRII-GFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLY  445 (540)
Q Consensus       368 ~~~~~~~~-~v~~l~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~  445 (540)
                      +  ..|.. .+..++|+ +|+.|++++.++.+. +||+..+...........+..+.|+|++   .+|++++.++.|++|
T Consensus       332 ~--~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG---~~la~~~~~~~v~~~  405 (1045)
T 1k32_A          332 V--PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG---KFAVVANDRFEIMTV  405 (1045)
T ss_dssp             C--SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS---SEEEEEETTSEEEEE
T ss_pred             c--cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCC---CEEEEECCCCeEEEE
Confidence            2  34666 89999999 999999999888899 9999887664444445678899999988   789999999999999


Q ss_pred             ECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC----------cEEEEeccCCCCccccccccccccee
Q 009203          446 DIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP----------VIHLFDIRYSANKPSQSIRAHQKRVF  515 (540)
Q Consensus       446 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg----------~i~iwd~~~~~~~~~~~~~~h~~~i~  515 (540)
                      |+.+++....       ..+|...+.+++|||||++|++++.++          .|++||+.+  ++ +..+..|...+.
T Consensus       406 d~~tg~~~~~-------~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~--g~-~~~l~~~~~~~~  475 (1045)
T 1k32_A          406 DLETGKPTVI-------ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--RK-IFAATTENSHDY  475 (1045)
T ss_dssp             ETTTCCEEEE-------EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--TE-EEECSCSSSBEE
T ss_pred             ECCCCceEEe-------ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC--Cc-EEEeeCCCcccC
Confidence            9998764332       235777889999999999999887654          899999986  44 666777888899


Q ss_pred             EEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          516 KAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       516 ~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .++|+|||++|++++.++...+|+
T Consensus       476 ~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          476 APAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             EEEECTTSCEEEEEESCCCCCEEC
T ss_pred             CceEcCCCCEEEEEecccCCcCcc
Confidence            999999999999999888877775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=4.9e-22  Score=191.73  Aligned_cols=271  Identities=10%  Similarity=0.071  Sum_probs=184.2

Q ss_pred             EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203          228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL  307 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~  307 (540)
                      ++++++ ++.++++++.++.|.+||..+++....+..       +....+..++|+|+|++++++.   ..++.|.+||+
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~~~v~~---~~~~~i~~~d~   72 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------PDKFGPGTAMMAPDNRTAYVLN---NHYGDIYGIDL   72 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-------SSCCSSCEEEECTTSSEEEEEE---TTTTEEEEEET
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec-------CCCCCCceeEECCCCCEEEEEe---CCCCcEEEEeC
Confidence            456777 488999999999999999998776555432       1112477899999998665441   67899999999


Q ss_pred             CCCCCceeEEeecCCCC---cccceeEEEEeCCCCCEEEEEecC------------CcEEEEecCCCCCccccceeeccc
Q 009203          308 NKTKGRACVTFLDDKPH---VKGIINSIIFLPWENPCFATGGSD------------HAVVLWSERDAEDSWKPKALHRNL  372 (540)
Q Consensus       308 ~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~  372 (540)
                      .++   .....+.....   ....+.+++|+| ++++|++++.+            +.|.+||+.+++........   .
T Consensus        73 ~t~---~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~  145 (349)
T 1jmx_B           73 DTC---KNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF---P  145 (349)
T ss_dssp             TTT---EEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE---E
T ss_pred             CCC---cEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec---c
Confidence            876   33433332100   023378899999 99999888865            89999999886532212222   2


Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCc-------------------------cEEEEeecCCC
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIES-------------------------KCMSVLPNPCD  427 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~  427 (540)
                      +...+.+++|+|+|+ +++++.  .|.+||+.+++.+.......                         ....+.+.+++
T Consensus       146 ~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  222 (349)
T 1jmx_B          146 MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  222 (349)
T ss_dssp             CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence            344688999999999 665544  49999999888765443321                         22233343322


Q ss_pred             CC--------ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeccC
Q 009203          428 FN--------LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       428 ~~--------~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ..        ..++......+.+.+|++.                .+...+.+++|+| +|++|+++  ++.|.+||+.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~  284 (349)
T 1jmx_B          223 KQDPATADLLYGYLSVDLKTGKTHTQEFA----------------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ  284 (349)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEE----------------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred             cCCccccccceeEEEEeccCCcEEecccc----------------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence            00        0111122233334443331                2345688999999 99999988  88999999987


Q ss_pred             CCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          499 SANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       499 ~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                        ++.+..+.. ...+.+++|+|+|++|++++.++.|++||+
T Consensus       285 --~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          285 --RKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             --TEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             --CeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEec
Confidence              565555543 335789999999998888888999999985

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=3.2e-22  Score=188.03  Aligned_cols=254  Identities=11%  Similarity=0.055  Sum_probs=179.0

Q ss_pred             ecCCCCeEEEeccc----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCC-CCCcceeecccccCCCCC-CCC
Q 009203          203 TSASPATIHCHTSN----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQS-RGSGASLLSTTDCLSPKH-RRW  276 (540)
Q Consensus       203 ~~~~d~~i~~~~~~----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~h-~~~  276 (540)
                      ..+.+++|.+|+..    ..+..|.+.|.+++|+|| +++|++++ ++.|.+||+.+ ++.....        .+| ...
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~~~~~~~~~~~--------~~~~~~~   86 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSLAGDPSPEKVD--------TGFATIC   86 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEESSSCCSCEECC--------CTTCCCB
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeCCCCCCceEec--------ccccccc
Confidence            45678899999764    346779999999999996 88888887 78999999988 6543222        233 467


Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEE--ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEE-EEecCCcEEE
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVL--NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFA-TGGSDHAVVL  353 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-s~~~dg~i~i  353 (540)
                      |.+++|+|+|++|+++..  ..++.+.||  ++.++.    ...+..    ...+..++|+| +++.|+ +++.++.+.|
T Consensus        87 ~~~~~~spdg~~l~~~~~--~~~~~~~l~~~~~~~~~----~~~~~~----~~~~~~~~~sp-dg~~l~~~~~~~~~~~l  155 (297)
T 2ojh_A           87 NNDHGISPDGALYAISDK--VEFGKSAIYLLPSTGGT----PRLMTK----NLPSYWHGWSP-DGKSFTYCGIRDQVFDI  155 (297)
T ss_dssp             CSCCEECTTSSEEEEEEC--TTTSSCEEEEEETTCCC----CEECCS----SSSEEEEEECT-TSSEEEEEEEETTEEEE
T ss_pred             ccceEECCCCCEEEEEEe--CCCCcceEEEEECCCCc----eEEeec----CCCccceEECC-CCCEEEEEECCCCceEE
Confidence            899999999999999821  133445555  544431    233332    23488999999 888776 7888999999


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECC-CCCeeee-eccCccEEEEeecCCCCCc
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAG-VGRADFK-HQIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~  430 (540)
                      |+++....    .......+...+.+++|+|+|+.|++++ .++.+++|++. .+..... ......+..+.|+|++   
T Consensus       156 ~~~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---  228 (297)
T 2ojh_A          156 YSMDIDSG----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG---  228 (297)
T ss_dssp             EEEETTTC----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS---
T ss_pred             EEEECCCC----cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC---
Confidence            98643221    1122234778899999999999888766 58889999875 3333333 3344567788999987   


Q ss_pred             eEEEEEcCC-----------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC
Q 009203          431 FMVQTGTPG-----------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP  489 (540)
Q Consensus       431 ~~l~~~~~d-----------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg  489 (540)
                      .+|++++.+           +.|++||+.+++.....     ...+|...+.+++|+|+|++|++++.+.
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF-----DLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE-----EEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee-----ccCCCCcccccceECCCCCEEEEEEecc
Confidence            567666654           56999999877642211     2235677889999999999998887654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=1.4e-21  Score=188.53  Aligned_cols=281  Identities=8%  Similarity=0.036  Sum_probs=180.8

Q ss_pred             CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203          245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH  324 (540)
Q Consensus       245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  324 (540)
                      ++.|.+|+++...........     ..+...+..++|+|+|+ |+++... +.++.|.+||+.++.. ..+..+..   
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~-----~~~~~~p~~~a~spdg~-l~~~~~~-~~~~~v~~~~~~~g~~-~~~~~~~~---   83 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGL-----LAATQNPTYLALSAKDC-LYSVDKE-DDEGGIAAWQIDGQTA-HKLNTVVA---   83 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEE-----EEECSCCCCEEECTTCE-EEEEEEE-TTEEEEEEEEEETTEE-EEEEEEEE---
T ss_pred             CCCEEEEEEcCCCCeEEEeee-----eeccCCcceEEEccCCe-EEEEEec-CCCceEEEEEecCCcE-EEeeeeec---
Confidence            456888877643221111111     12335577899999999 5555110 2368999999976521 22333221   


Q ss_pred             cccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeeccc-------CCcceeEEEeccCCCEEEEEeCCC
Q 009203          325 VKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHRNL-------HSSAVMGVAGMQQKQIVLSAGADK  396 (540)
Q Consensus       325 ~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~v~~l~~s~~~~~l~~~~~dg  396 (540)
                      +...+..++|+| ++++|++++ .++.|.+|++...........+...+       +...+.+++|+|+|+++++...++
T Consensus        84 ~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           84 PGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             ESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             CCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            345688999999 999888877 67999999996432111111111111       123588999999999666666788


Q ss_pred             eEEEEECC-CCCeeee----eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccC---cccc
Q 009203          397 RIIGFDAG-VGRADFK----HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESS---ESQS  468 (540)
Q Consensus       397 ~i~iwd~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~---~~~~  468 (540)
                      .|++||+. +++....    .........+.|+|++.  .+++++..++.|.+|++.................   ....
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~--~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ--YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCC--EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence            99999998 4544321    22234567899999872  2555577889999999875221111110000111   1124


Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEeccCC-CCcccccccccccceeEEEEcCCCCEEEEEEcC-CcEEEEe
Q 009203          469 ALINQSWSPDGLYIT-SGSADPVIHLFDIRYS-ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD-LNIGLHK  539 (540)
Q Consensus       469 ~v~~~~~sp~g~~l~-sg~~dg~i~iwd~~~~-~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-g~v~iw~  539 (540)
                      .+..++|+|||++|+ +...++.|.+|++... ....+..+..+...+.+++|+|||++|++++.+ +.|.+|+
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA  314 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence            588999999999874 5566899999999732 124455555666678999999999988888765 8999995

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=1.9e-22  Score=208.90  Aligned_cols=271  Identities=14%  Similarity=0.080  Sum_probs=190.8

Q ss_pred             ccCceEEEEEecCCCcEEEEEeC-CceEEEEEcCCCCCcceeecccccCCCCCC-CCceeEEEecCCCeEEEEeecCCCC
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSAL-DGVIRLWQLQSRGSGASLLSTTDCLSPKHR-RWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      +..+|++++|+|| |+.||+++. ||+++||++..++. ..+        ..|. ..+..++|+|| ++++++.. .+.+
T Consensus        20 ~~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~-~~l--------t~~~~~~~~~~~~spd-~~l~~~~~-~~g~   87 (582)
T 3o4h_A           20 IAVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGET-VKL--------NREPINSVLDPHYGVG-RVILVRDV-SKGA   87 (582)
T ss_dssp             HHSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEE-EEC--------CSSCCSEECEECTTCS-EEEEEEEC-STTS
T ss_pred             hccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCc-Eee--------ecccccccccccCCCC-eEEEEecc-CCCC
Confidence            3568999999997 888888876 99999999855432 222        2333 57899999999 66666511 0125


Q ss_pred             CeEEEEecCC--CCCceeEEeecCCCCcccceeEEEEeCCCCC-EEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          300 SQISVLNLNK--TKGRACVTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       300 ~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      ....+|.+..  ..  ... .+..    ...+...+|+| +++ .+++.+.++.+.+||+.+++.    ..+..  +.. 
T Consensus        88 ~~~~l~~~~~~~~g--~~~-~l~~----~~~~~~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~----~~l~~--~~~-  152 (582)
T 3o4h_A           88 EQHALFKVNTSRPG--EEQ-RLEA----VKPMRILSGVD-TGEAVVFTGATEDRVALYALDGGGL----RELAR--LPG-  152 (582)
T ss_dssp             CCEEEEEEETTSTT--CCE-ECTT----SCSBEEEEEEE-CSSCEEEEEECSSCEEEEEEETTEE----EEEEE--ESS-
T ss_pred             cceEEEEEeccCCC--ccc-cccC----CCCceeeeeCC-CCCeEEEEecCCCCceEEEccCCcE----EEeec--CCC-
Confidence            5566665543  21  112 2222    11244668888 654 334444445566999988763    33322  222 


Q ss_pred             eeEEEeccCCCEEEEEeCC----CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC--eEEEEECCCC
Q 009203          377 VMGVAGMQQKQIVLSAGAD----KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR--QLRLYDIRLR  450 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~  450 (540)
                       .+++|+|||++|++++.+    +.|++||+.+++..........+..+.|+|++   .+|+++..++  .|++||+.++
T Consensus       153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGM---KVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTS---CEEEEEECSSCEEEEEECTTTC
T ss_pred             -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCC---CEEEEccCCCeeEEEEEcCCCC
Confidence             889999999999988877    78999999988876555556778899999998   6788888888  8999999987


Q ss_pred             cceeeeeccccccCccccCeEEEE--------EcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203          451 QTEIHAFGWKQESSESQSALINQS--------WSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~--------~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      +.. .       +.+|...+..++        |+|||.++++++.||.+++|++  +  +...   .+.+.|.+++|+ +
T Consensus       229 ~~~-~-------~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g--~~~~---~~~~~v~~~~~s-d  292 (582)
T 3o4h_A          229 SVE-D-------LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G--ERVE---APQGNHGRVVLW-R  292 (582)
T ss_dssp             CEE-E-------CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T--EEEC---CCSSEEEEEEEE-T
T ss_pred             cEE-E-------ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C--Ceec---cCCCceEEEEec-C
Confidence            654 1       134444555555        9999988999999999999999  2  2222   234678999999 9


Q ss_pred             CCEEEEEEcCCc---EEEEe
Q 009203          523 HPLLISISSDLN---IGLHK  539 (540)
Q Consensus       523 ~~~l~s~~~dg~---v~iw~  539 (540)
                      ++++++++.+..   +.+|+
T Consensus       293 g~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          293 GKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             TEEEEEEEETTEEEEEEEET
T ss_pred             CEEEEEEcCCCCCCeEEEEc
Confidence            999998887754   66665

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=4.2e-21  Score=190.14  Aligned_cols=320  Identities=9%  Similarity=0.052  Sum_probs=194.6

Q ss_pred             CeEEEeccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCc-------ceeecccccCCCCCCCCceeE
Q 009203          208 ATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSG-------ASLLSTTDCLSPKHRRWPEDI  280 (540)
Q Consensus       208 ~~i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~-------~~~~~~~~~~~~~h~~~V~~~  280 (540)
                      +.+++|+...  ..+...++.++++++ +.++++|+.|+ ++||+.......       .............|...|.++
T Consensus        23 ~~vri~~~~~--~~~~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l   98 (434)
T 2oit_A           23 KKVRIFDSPE--ELPKERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHL   98 (434)
T ss_dssp             CEEECSCCCS--SCCCSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEE
T ss_pred             eeEEecCCcc--ccCCCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEE
Confidence            4566664321  123457899999995 78899999888 999876421100       000000000001356679999


Q ss_pred             EEecCCCeEEEEeecCCCCCeEEEEecCCC-----CCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          281 AWHPQGNSLFSAHTADSGDSQISVLNLNKT-----KGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       281 ~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      +|+|+|++|++++..++.|+.|++||+.++     .....+..+.....|...|.+++|+|.++.+|++++.||+|++||
T Consensus        99 ~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD  178 (434)
T 2oit_A           99 ALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQ  178 (434)
T ss_dssp             EECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred             EEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence            999999999931111289999999998754     111111122222247788999999994489999999999999999


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec--------cCccEEEEeecCCC
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ--------IESKCMSVLPNPCD  427 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~  427 (540)
                      ++++..     .....+|...|.+++|+|+|++|++|+.||.|++||++ +.......        +...+.++.|++..
T Consensus       179 ~~~~~~-----~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~  252 (434)
T 2oit_A          179 VTETVK-----VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY  252 (434)
T ss_dssp             ESSSEE-----EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred             cCCCcc-----eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence            998753     22234588899999999999999999999999999998 44433221        12378899999865


Q ss_pred             CCceEEE-EEcCCC------eEEEEECCCCcce--e---eeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEE
Q 009203          428 FNLFMVQ-TGTPGR------QLRLYDIRLRQTE--I---HAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLF  494 (540)
Q Consensus       428 ~~~~~l~-~~~~dg------~v~i~d~~~~~~~--~---~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iw  494 (540)
                         .+++ ....+|      .+++|++......  .   ..........+...+-..+.+-++.+++++++ ..+.|.|+
T Consensus       253 ---~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl  329 (434)
T 2oit_A          253 ---VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSIL  329 (434)
T ss_dssp             ---EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEE
T ss_pred             ---eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEE
Confidence               4443 344443      3999999865311  1   11111000112222333344446767666554 34445555


Q ss_pred             eccCCC-----------Cccccccc--ccccceeEEEEc---------------CCCCEEEEEEcCCcEEEEeC
Q 009203          495 DIRYSA-----------NKPSQSIR--AHQKRVFKAVWH---------------YSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       495 d~~~~~-----------~~~~~~~~--~h~~~i~~l~~s---------------~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ......           .+....+.  .......++++.               |-...|..-+.||.+..|.+
T Consensus       330 ~~~~~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~  403 (434)
T 2oit_A          330 ARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYM  403 (434)
T ss_dssp             EECTTSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEE
T ss_pred             EecCCCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEE
Confidence            433210           01111111  112233444432               22367888899999999974

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=7.4e-20  Score=177.52  Aligned_cols=286  Identities=10%  Similarity=0.063  Sum_probs=181.5

Q ss_pred             CcEEEEEe----CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC
Q 009203          236 EQLFVTSA----LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK  311 (540)
Q Consensus       236 ~~~l~tg~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~  311 (540)
                      ..+++.|+    .++.|.+|.+............     . +...+..++|+|+|++|+++...+..++.|.+|++....
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~-----~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSD-----A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK   86 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEE-----E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeec-----c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence            44566664    3568999987543211122111     1 345577899999999998882111124899999987531


Q ss_pred             C-ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeec-c--------cCCcceeEE
Q 009203          312 G-RACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHR-N--------LHSSAVMGV  380 (540)
Q Consensus       312 ~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~-~--------~~~~~v~~l  380 (540)
                      . ...+.....   +...+..+++   ++++|++++ .++.|.+|++.............. .        .+...+.++
T Consensus        87 g~~~~~~~~~~---~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  160 (361)
T 3scy_A           87 GTLHLLNTQKT---MGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCV  160 (361)
T ss_dssp             TEEEEEEEEEC---SSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEE
T ss_pred             CcEEEeeEecc---CCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEE
Confidence            1 122333221   2344667777   556665555 688999999976443222211111 1        123346889


Q ss_pred             EeccCCCEEEEEe-CCCeEEEEECCCCCe--------------eeeeccCccEEEEeecCCCCCceEEEEEc-CCCeEEE
Q 009203          381 AGMQQKQIVLSAG-ADKRIIGFDAGVGRA--------------DFKHQIESKCMSVLPNPCDFNLFMVQTGT-PGRQLRL  444 (540)
Q Consensus       381 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~i  444 (540)
                      +|+|+|+++++++ .++.|.+|++.....              ............+.|+|++   .++++++ .++.|.+
T Consensus       161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~v~~~~~~~v~v  237 (361)
T 3scy_A          161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG---KFAYLINEIGGTVIA  237 (361)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS---SEEEEEETTTCEEEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC---CEEEEEcCCCCeEEE
Confidence            9999999776655 488999998875431              1223345567789999988   4555444 7899999


Q ss_pred             EECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC--CCcEEEEeccCCCCc--ccccccccccceeEEEEc
Q 009203          445 YDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA--DPVIHLFDIRYSANK--PSQSIRAHQKRVFKAVWH  520 (540)
Q Consensus       445 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~--dg~i~iwd~~~~~~~--~~~~~~~h~~~i~~l~~s  520 (540)
                      ||+.++......  .......+...+..++|+|||++|+++..  ++.|.+|+++...+.  .+..+.. ...+.+++|+
T Consensus       238 ~~~~~g~~~~~~--~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s  314 (361)
T 3scy_A          238 FRYADGMLDEIQ--TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT  314 (361)
T ss_dssp             EEEETTEEEEEE--EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred             EEecCCceEEeE--EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence            999865421111  11122344456789999999999876665  489999999732133  3444443 4568899999


Q ss_pred             CCCCEEEEEE-cCCcEEEEe
Q 009203          521 YSHPLLISIS-SDLNIGLHK  539 (540)
Q Consensus       521 ~~~~~l~s~~-~dg~v~iw~  539 (540)
                      |||++|++++ .++.|.+|+
T Consensus       315 pdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          315 PNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             TTSCEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEE
Confidence            9999888887 678999975

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=3e-21  Score=204.81  Aligned_cols=284  Identities=11%  Similarity=0.044  Sum_probs=189.5

Q ss_pred             eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCc-ceeeccccc---------CCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSG-ASLLSTTDC---------LSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~-~~~~~~~~~---------~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      +..+.|.   +..+++++.|+ | +||+.+++.. ..+......         ....+...|.+++|+|| ..++.+   
T Consensus        28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~---   98 (706)
T 2z3z_A           28 VVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF---   98 (706)
T ss_dssp             CTTCEEE---TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE---
T ss_pred             CCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE---
Confidence            5557787   33566667788 8 9999988763 333221100         00111256999999999 666554   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC-----CCCccccceeec
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD-----AEDSWKPKALHR  370 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~  370 (540)
                        .++.|++||+.++   .......    +...+.+++|+| +++.|+++ .|+.|++||+.+     ++.    ..+..
T Consensus        99 --~~~~i~~~d~~~~---~~~~l~~----~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~----~~~~~  163 (706)
T 2z3z_A           99 --TQGGLVGFDMLAR---KVTYLFD----TNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRA----IAVTI  163 (706)
T ss_dssp             --ETTEEEEEETTTT---EEEEEEC----CTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCC----EESCS
T ss_pred             --ECCEEEEEECCCC---ceEEccC----CcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCc----EEecc
Confidence              3599999999875   3333332    245688899999 99999885 679999999988     653    22211


Q ss_pred             ccCC-------------cceeEEEeccCCCEEEEEe---------------------------------CCCeEEEEECC
Q 009203          371 NLHS-------------SAVMGVAGMQQKQIVLSAG---------------------------------ADKRIIGFDAG  404 (540)
Q Consensus       371 ~~~~-------------~~v~~l~~s~~~~~l~~~~---------------------------------~dg~i~iwd~~  404 (540)
                      ..+.             ..+.+++|+|||++|++++                                 .+..|++||+.
T Consensus       164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~  243 (706)
T 2z3z_A          164 DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA  243 (706)
T ss_dssp             CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT
T ss_pred             CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC
Confidence            1111             1258999999999999987                                 44679999999


Q ss_pred             CCCeeeee---ccCccEEEEeecCCCCCceEEEEEcCCC-----eEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          405 VGRADFKH---QIESKCMSVLPNPCDFNLFMVQTGTPGR-----QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       405 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      +++.....   .....+..+.|+|++   ..|++++.++     .|++||+.++.........  ........+.+++|+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~~s  318 (706)
T 2z3z_A          244 TGKTVYLQTGEPKEKFLTNLSWSPDE---NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE--TDKHYVEPLHPLTFL  318 (706)
T ss_dssp             TTEEEECCCCSCTTCEEEEEEECTTS---SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE--ECSSCCCCCSCCEEC
T ss_pred             CCceEeeccCCCCceeEeeEEEECCC---CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc--cCCCeECccCCceee
Confidence            88764433   234567899999988   5777766665     8999999987322222110  001111234678999


Q ss_pred             C--CCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeE-EEEcCCCCEEEEEEcC-C----cEEEEe
Q 009203          477 P--DGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFK-AVWHYSHPLLISISSD-L----NIGLHK  539 (540)
Q Consensus       477 p--~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~-l~~s~~~~~l~s~~~d-g----~v~iw~  539 (540)
                      |  ||++|++++.||.++||.++.. +..+..+..|...+.. ++|+|+|+.|+.++.+ +    .|..||
T Consensus       319 p~~dg~~l~~~~~~g~~~l~~~~~~-~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          319 PGSNNQFIWQSRRDGWNHLYLYDTT-GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             TTCSSEEEEEECTTSSCEEEEEETT-SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             cCCCCEEEEEEccCCccEEEEEECC-CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence            9  9999999999999999998732 5566677777777877 7999999977666544 3    455554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=1e-20  Score=181.52  Aligned_cols=276  Identities=10%  Similarity=0.056  Sum_probs=189.1

Q ss_pred             EEecCCCCeEEEeccc-----hhcc-cccC-ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVSS-LHKR-KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~~-~h~~-~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      +.++..++.|.+|+..     ..+. ++.. .+.+++|+||+..++++++.++.|.+||+.+++....+.....   ..|
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~   80 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---EER   80 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---TEE
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc---ccc
Confidence            5566778899999764     1122 3322 4889999997334556777789999999998876554432110   002


Q ss_pred             CCCceeEEEecCCCeEEEEeec-----CC---CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTA-----DS---GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATG  345 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~-----~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  345 (540)
                      ...+.+++|+|+|++|+++...     +.   .++.|.+||+.++   .....+..    ...+.+++|+| ++++|+++
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~----~~~~~~~~~s~-dg~~l~~~  152 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAFEA----PRQITMLAWAR-DGSKLYGL  152 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEEC----CSSCCCEEECT-TSSCEEEE
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC---cEEEEEeC----CCCcceeEECC-CCCEEEEe
Confidence            2357889999999998887100     00   5799999999875   34444442    23478899999 88888777


Q ss_pred             ecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC------------------------eEEEE
Q 009203          346 GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK------------------------RIIGF  401 (540)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg------------------------~i~iw  401 (540)
                        ++.|.+||+.+++..   ..+..  +. ....+.|+|+|..++..+..+                        .|.+|
T Consensus       153 --~~~i~~~d~~~~~~~---~~~~~--~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  224 (337)
T 1pby_B          153 --GRDLHVMDPEAGTLV---EDKPI--QS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             --SSSEEEEETTTTEEE---EEECS--TT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             --CCeEEEEECCCCcEe---eeeec--cc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence              688999999987642   22211  11 112347889888766544322                        47899


Q ss_pred             ECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC
Q 009203          402 DAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG  479 (540)
Q Consensus       402 d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  479 (540)
                      |+.+++....  .........+.++|++   .+++++  ++.|.+||+.+++......        ....+.+++|+|+|
T Consensus       225 d~~~~~~~~~~~~~~~~~~~~~~~s~dg---~~l~~~--~~~v~~~d~~~~~~~~~~~--------~~~~~~~~~~s~dg  291 (337)
T 1pby_B          225 DLETGEMAMREVRIMDVFYFSTAVNPAK---TRAFGA--YNVLESFDLEKNASIKRVP--------LPHSYYSVNVSTDG  291 (337)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECTTS---SEEEEE--ESEEEEEETTTTEEEEEEE--------CSSCCCEEEECTTS
T ss_pred             eCCCCCceEeecCCCCCceeeEEECCCC---CEEEEe--CCeEEEEECCCCcCcceec--------CCCceeeEEECCCC
Confidence            9998876421  2233456789999987   567666  7999999998876433211        12357899999999


Q ss_pred             CEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          480 LYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       480 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      ++|++++.++.|.+||+.+  ++.+..+..+
T Consensus       292 ~~l~~~~~~~~i~v~d~~~--~~~~~~~~~~  320 (337)
T 1pby_B          292 STVWLGGALGDLAAYDAET--LEKKGQVDLP  320 (337)
T ss_dssp             CEEEEESBSSEEEEEETTT--CCEEEEEECG
T ss_pred             CEEEEEcCCCcEEEEECcC--CcEEEEEEcC
Confidence            9999999999999999987  5666666544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=2.4e-20  Score=179.94  Aligned_cols=259  Identities=11%  Similarity=0.086  Sum_probs=171.2

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeC--CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSAL--DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      ..+...+..++|+|| |++++++..  ++.|.+|++..+... .+ ...    ..+...+..++|+|+|++|+++.   .
T Consensus        36 ~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~-~~-~~~----~~~~~~p~~~a~spdg~~l~~~~---~  105 (347)
T 3hfq_A           36 LAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAH-KL-NTV----VAPGTPPAYVAVDEARQLVYSAN---Y  105 (347)
T ss_dssp             EEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEE-EE-EEE----EEESCCCSEEEEETTTTEEEEEE---T
T ss_pred             eeccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEE-Ee-eee----ecCCCCCEEEEECCCCCEEEEEe---C
Confidence            356677889999996 775444432  689999999765421 11 110    13456688999999999888871   3


Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCC------cccceeEEEEeCCCCCEEEEEecCCcEEEEecC-CCCCccccceeec
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPH------VKGIINSIIFLPWENPCFATGGSDHAVVLWSER-DAEDSWKPKALHR  370 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~  370 (540)
                      .++.|.+|++........+..+.....      ....+.+++|+| ++++++++..++.|.+||+. ++.. .....+. 
T Consensus       106 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~-~~~~~~~-  182 (347)
T 3hfq_A          106 HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQL-SEQSVLT-  182 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCE-EEEEEEE-
T ss_pred             CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcE-EEeeeEE-
Confidence            789999999964322233333322110      123488999999 88877777778899999998 4432 1011111 


Q ss_pred             ccCCcceeEEEeccCCCEEEE-EeCCCeEEEEECCC--CCeee--eec-c------CccEEEEeecCCCCCceEE-EEEc
Q 009203          371 NLHSSAVMGVAGMQQKQIVLS-AGADKRIIGFDAGV--GRADF--KHQ-I------ESKCMSVLPNPCDFNLFMV-QTGT  437 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~~~l~~-~~~dg~i~iwd~~~--~~~~~--~~~-~------~~~~~~~~~~~~~~~~~~l-~~~~  437 (540)
                      ......+..++|+|+|+++++ +..++.|.+|++..  ++...  ... .      ...+..++|+|++   .+| +++.
T Consensus       183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG---~~l~v~~~  259 (347)
T 3hfq_A          183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG---HFLYVSNR  259 (347)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS---CEEEEEEE
T ss_pred             cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC---CEEEEEeC
Confidence            112346788999999996665 55688999999874  44321  111 1      1457789999988   455 6667


Q ss_pred             CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccC
Q 009203          438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRY  498 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~  498 (540)
                      .++.|.+||+........    ...+..+...+.+++|+|||++|++++. ++.|.+|+++.
T Consensus       260 ~~~~v~v~~~~~~g~~~~----~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          260 GYNTLAVFAVTADGHLTL----IQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             TTTEEEEEEECGGGCEEE----EEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCEEEEEEECCCCcEEE----eEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            789999999974321111    1122334556889999999999888775 48999997654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=1.5e-19  Score=175.40  Aligned_cols=295  Identities=9%  Similarity=0.067  Sum_probs=185.5

Q ss_pred             CCCeEEEeccc-------hhcccccCceEEEEEecCCCcEEEEEeCC----ceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          206 SPATIHCHTSN-------HVSSLHKRKLRSLSLNPVNEQLFVTSALD----GVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       206 ~d~~i~~~~~~-------~~~~~h~~~V~~l~~spd~~~~l~tg~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      .+..|.+|...       .+...|...+..++|+|| +++|++++.+    +.|.+|++.............    ..+.
T Consensus        25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~----~~~~   99 (361)
T 3scy_A           25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ----KTMG   99 (361)
T ss_dssp             SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE----ECSS
T ss_pred             CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe----ccCC
Confidence            45667776332       111126788899999996 8888888875    799999987642111111111    1233


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce-eEEe--ecCCC-----CcccceeEEEEeCCCCCEEEEEe
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA-CVTF--LDDKP-----HVKGIINSIIFLPWENPCFATGG  346 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~-~~~~--~~~~~-----~~~~~v~~~~~~p~~~~~l~s~~  346 (540)
                      ..+..+++  ++++|+++.   ..++.|.+|++....... ....  ..+..     .+...+.+++|+| +++++++++
T Consensus       100 ~~p~~~~~--dg~~l~~~~---~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~  173 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTAN---YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADD  173 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEE---TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEE
T ss_pred             CCcEEEEE--CCCEEEEEE---CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEe
Confidence            45667777  788777761   578999999997542211 1111  11100     1123468899999 888665554


Q ss_pred             -cCCcEEEEecCCCCC------cccc--ceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeee--ec-
Q 009203          347 -SDHAVVLWSERDAED------SWKP--KALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFK--HQ-  413 (540)
Q Consensus       347 -~dg~i~iwd~~~~~~------~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~-  413 (540)
                       .++.|.+|++.....      +...  .......+...+..++|+|+|+++++++ .++.|.+||+.++.....  .. 
T Consensus       174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~  253 (361)
T 3scy_A          174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA  253 (361)
T ss_dssp             TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES
T ss_pred             CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec
Confidence             578999999876441      1000  0111122455678999999999888777 689999999987654221  11 


Q ss_pred             ---cCccEEEEeecCCCCCceEEEEEc-C-CCeEEEEECCC--CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203          414 ---IESKCMSVLPNPCDFNLFMVQTGT-P-GRQLRLYDIRL--RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       414 ---~~~~~~~~~~~~~~~~~~~l~~~~-~-dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                         .......+.|+|++   .+|+++. . ++.|.+|++..  +....  ..   .+.. ...+.+++|+|+|++|++++
T Consensus       254 ~~~~~~~~~~i~~spdg---~~l~v~~~~~~~~i~v~~~~~~~g~~~~--~~---~~~~-g~~~~~~~~spdg~~l~~~~  324 (361)
T 3scy_A          254 DTVNAQGSGDIHLSPDG---KYLYASNRLKADGVAIFKVDETNGTLTK--VG---YQLT-GIHPRNFIITPNGKYLLVAC  324 (361)
T ss_dssp             CSSCCCCEEEEEECTTS---SEEEEEECSSSCEEEEEEECTTTCCEEE--EE---EEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred             CCCCCCCcccEEECCCC---CEEEEECCCCCCEEEEEEEcCCCCcEEE--ee---EecC-CCCCceEEECCCCCEEEEEE
Confidence               12345689999988   5665544 4 58999999963  33211  11   1111 34678999999999988887


Q ss_pred             -CCCcEEEEeccCCCCcccccc-cccccceeEEEEc
Q 009203          487 -ADPVIHLFDIRYSANKPSQSI-RAHQKRVFKAVWH  520 (540)
Q Consensus       487 -~dg~i~iwd~~~~~~~~~~~~-~~h~~~i~~l~~s  520 (540)
                       .++.|.+|+++...++..... ..+...+.|+.|.
T Consensus       325 ~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          325 RDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence             678999987764334443332 2345578899885

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=5.5e-21  Score=203.16  Aligned_cols=281  Identities=10%  Similarity=-0.013  Sum_probs=186.6

Q ss_pred             EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC---CCceeEEEecCCCeEEEEeecC-----CC
Q 009203          227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR---RWPEDIAWHPQGNSLFSAHTAD-----SG  298 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~---~~V~~~~~~~~~~~l~s~~~~~-----~~  298 (540)
                      .+++|+|| +.++++ +.|++|++||+.+++....+.        +|.   ..|.+++|+|||++|++++..+     +.
T Consensus        19 ~~~~~s~d-g~~~~~-~~d~~i~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~   88 (719)
T 1z68_A           19 FFPNWISG-QEYLHQ-SADNNIVLYNIETGQSYTILS--------NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSY   88 (719)
T ss_dssp             CCCEESSS-SEEEEE-CTTSCEEEEESSSCCEEEEEC--------HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             CccEECCC-CeEEEE-cCCCCEEEEEcCCCcEEEEEc--------cccccccceeeEEECCCCCeEEEEecCceeEEeec
Confidence            37899997 665555 469999999999887543331        221   2478999999999999882110     11


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc--
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA--  376 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--  376 (540)
                      ++.|++||+.++   ..+.....    ...+..++|+| +|+.|+++. ++.|++||+.+++.    ..+...++...  
T Consensus        89 ~~~i~~~d~~~g---~~~~~~~l----~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~----~~l~~~~~~~~v~  155 (719)
T 1z68_A           89 TATYYIYDLSNG---EFVRGNEL----PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPP----FQITFNGRENKIF  155 (719)
T ss_dssp             EEEEEEEETTTT---EECCSSCC----CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCC----EECCCCCBTTTEE
T ss_pred             ceEEEEEECCCC---ccccceec----CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCc----EEEecCCCcCCeE
Confidence            689999999976   22100111    23588999999 999999886 78999999988764    22222222222  


Q ss_pred             ---------------eeEEEeccCCCEEEEEeCCC----------------------------------eEEEEECCCCC
Q 009203          377 ---------------VMGVAGMQQKQIVLSAGADK----------------------------------RIIGFDAGVGR  407 (540)
Q Consensus       377 ---------------v~~l~~s~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~  407 (540)
                                     ..+++|+|||+.|++++.|.                                  .|++||+.+++
T Consensus       156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~  235 (719)
T 1z68_A          156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA  235 (719)
T ss_dssp             ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred             cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence                           25899999999999987652                                  78999999876


Q ss_pred             ee---ee------eccCccEEEEeecCCCCCceEEEEEcC--C--CeEEEEE----CCCCcceeeeeccccccCccccCe
Q 009203          408 AD---FK------HQIESKCMSVLPNPCDFNLFMVQTGTP--G--RQLRLYD----IRLRQTEIHAFGWKQESSESQSAL  470 (540)
Q Consensus       408 ~~---~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~--d--g~v~i~d----~~~~~~~~~~~~~~~~~~~~~~~v  470 (540)
                      ..   ..      ......+..+.|+|++   .++++...  +  ..|.+||    +.+++......   ....+|...+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~---~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~---~~~~~~~~~~  309 (719)
T 1z68_A          236 YVGPQEVPVPAMIASSDYYFSWLTWVTDE---RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE---HIEESRTGWA  309 (719)
T ss_dssp             HHCCEECCCCHHHHTSCEEEEEEEESSSS---EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE---EEEECSSSCS
T ss_pred             ccceeEccCCccCCCCcceEEEeEEeCCC---eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe---cccccCCceE
Confidence            42   11      1234567889999986   56666332  2  3488899    76654322100   0002455555


Q ss_pred             E-----EEEEcCCCCEEEE--EeCCC--cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcC-----CcEE
Q 009203          471 I-----NQSWSPDGLYITS--GSADP--VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD-----LNIG  536 (540)
Q Consensus       471 ~-----~~~~sp~g~~l~s--g~~dg--~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~d-----g~v~  536 (540)
                      .     .+.|+|||+.|+.  +..+|  .|++||+..  +. ...+..+...+..+.++ +++.|+..+.+     +.++
T Consensus       310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~--~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~  385 (719)
T 1z68_A          310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV--EN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRN  385 (719)
T ss_dssp             SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS--TT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBE
T ss_pred             ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC--Cc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEE
Confidence            5     7899999996554  44555  466667664  33 44555556668888777 88877766655     7888


Q ss_pred             EEeC
Q 009203          537 LHKI  540 (540)
Q Consensus       537 iw~l  540 (540)
                      +|.+
T Consensus       386 l~~~  389 (719)
T 1z68_A          386 IYRI  389 (719)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8863

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=3e-20  Score=197.48  Aligned_cols=304  Identities=8%  Similarity=-0.007  Sum_probs=198.9

Q ss_pred             CCCeEEEeccc-----hhcccccC---ceEEEEEecCCCcEEEEEeC---------CceEEEEEcCCCCCcceeeccccc
Q 009203          206 SPATIHCHTSN-----HVSSLHKR---KLRSLSLNPVNEQLFVTSAL---------DGVIRLWQLQSRGSGASLLSTTDC  268 (540)
Q Consensus       206 ~d~~i~~~~~~-----~~~~~h~~---~V~~l~~spd~~~~l~tg~~---------dg~v~iw~~~~~~~~~~~~~~~~~  268 (540)
                      .|++|++|+..     .++.+|..   .|.+++|||| |++|++++.         ++.|++||+.+++......     
T Consensus        34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-----  107 (719)
T 1z68_A           34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-----  107 (719)
T ss_dssp             TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-----
T ss_pred             CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEEEEEECCCCcccccee-----
Confidence            47899999754     33455544   4999999996 888888876         7899999998876421010     


Q ss_pred             CCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCccc-----------------ceeE
Q 009203          269 LSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKG-----------------IINS  331 (540)
Q Consensus       269 ~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-----------------~v~~  331 (540)
                          ....+..++|+|||+.|+++     .++.|++||+.++..   ......  .+..                 ...+
T Consensus       108 ----l~~~~~~~~~SPDG~~la~~-----~~~~i~~~~~~~g~~---~~l~~~--~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A          108 ----LPRPIQYLCWSPVGSKLAYV-----YQNNIYLKQRPGDPP---FQITFN--GRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             ----CCSSBCCEEECSSTTCEEEE-----ETTEEEEESSTTSCC---EECCCC--CBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             ----cCcccccceECCCCCEEEEE-----ECCeEEEEeCCCCCc---EEEecC--CCcCCeEcccccceeeeecccCccc
Confidence                01347889999999999997     478999999987632   222211  1111                 1258


Q ss_pred             EEEeCCCCCEEEEEecCC----------------------------------cEEEEecCCCCCccccce---eecccCC
Q 009203          332 IIFLPWENPCFATGGSDH----------------------------------AVVLWSERDAEDSWKPKA---LHRNLHS  374 (540)
Q Consensus       332 ~~~~p~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~---~~~~~~~  374 (540)
                      ++|+| ||+.|++++.|.                                  .|++||+.+++.......   ....+|.
T Consensus       174 ~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          174 LWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             EEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             EEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            99999 999999987652                                  788999988763100000   0113477


Q ss_pred             cceeEEEeccCCCEEEEEeCC----CeEEEEE----CCCCCeeeee-----ccCccEE-----EEeecCCCCCceEEEEE
Q 009203          375 SAVMGVAGMQQKQIVLSAGAD----KRIIGFD----AGVGRADFKH-----QIESKCM-----SVLPNPCDFNLFMVQTG  436 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~l~~~  436 (540)
                      ..+.+++|+||++++++....    ..|.+||    +.+++.....     .....+.     .+.|+|++.. .++++.
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~  331 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS-YYKIFS  331 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC-EEEEEE
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCe-EEEEEE
Confidence            889999999998877764432    2488999    7776654333     2233333     6788998743 133345


Q ss_pred             cCCC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCCCCc-cccc--
Q 009203          437 TPGR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYSANK-PSQS--  506 (540)
Q Consensus       437 ~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~~~~-~~~~--  506 (540)
                      ..+|  .|.+||+.++..  .      .+..+...+..+.++ +++.|+..+.+     +.+++|.+....+. ....  
T Consensus       332 ~~~g~~~l~~~~~~~~~~--~------~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~  402 (719)
T 1z68_A          332 DKDGYKHIHYIKDTVENA--I------QITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT  402 (719)
T ss_dssp             CTTSCEEEEEESSCSTTC--E------ECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS
T ss_pred             ccCCceEEEEEECCCCce--E------ecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc
Confidence            4555  577777766542  1      223445567787777 88877766554     88999988752121 1122  


Q ss_pred             --ccccccceeEEEEcCCCCEEEEE-EcC--CcEEEEeC
Q 009203          507 --IRAHQKRVFKAVWHYSHPLLISI-SSD--LNIGLHKI  540 (540)
Q Consensus       507 --~~~h~~~i~~l~~s~~~~~l~s~-~~d--g~v~iw~l  540 (540)
                        +.+|...+..+.|+|++++++.. +.+  ..+.+||+
T Consensus       403 ~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~  441 (719)
T 1z68_A          403 CHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG  441 (719)
T ss_dssp             TTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred             CccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence              23366678899999999877643 333  35667763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=2.1e-19  Score=173.55  Aligned_cols=244  Identities=10%  Similarity=0.017  Sum_probs=176.5

Q ss_pred             CceeEEEecCCCeEEEEeecCC---CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCE-EEEEecCCcE
Q 009203          276 WPEDIAWHPQGNSLFSAHTADS---GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC-FATGGSDHAV  351 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~dg~i  351 (540)
                      .+..++|+|+|++|+++...+.   .++.|.+||..+++   .+..+..    ...+.+++|+| +++. ++++..++.|
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~~----~~~~~~~~~s~-dg~~l~v~~~~~~~v  113 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE---VTQAIHN----DLKPFGATINN-TTQTLWFGNTVNSAV  113 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC---EEEEEEE----SSCCCSEEEET-TTTEEEEEETTTTEE
T ss_pred             CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe---EEEEEec----CCCcceEEECC-CCCEEEEEecCCCEE
Confidence            4678999999998888721100   16789999999873   3444332    23477899999 8875 4555667999


Q ss_pred             EEEecCCCCCccccceeecccC-------CcceeEEEeccCCCEEEEEe--CCCeEEEEECCCCCeeeeec-cCccEEEE
Q 009203          352 VLWSERDAEDSWKPKALHRNLH-------SSAVMGVAGMQQKQIVLSAG--ADKRIIGFDAGVGRADFKHQ-IESKCMSV  421 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~~~~-------~~~v~~l~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~-~~~~~~~~  421 (540)
                      .+||..+++..   ..+.....       ...+.+++|+|+|+.+++++  .++.|.+||+.+++.+.... .......+
T Consensus       114 ~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (353)
T 3vgz_A          114 TAIDAKTGEVK---GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGL  190 (353)
T ss_dssp             EEEETTTCCEE---EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred             EEEeCCCCeeE---EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceE
Confidence            99999988752   22221100       11278899999999888776  47899999999988877665 44557788


Q ss_pred             eecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCCC
Q 009203          422 LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYSA  500 (540)
Q Consensus       422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~  500 (540)
                      .++|++   .++++++.++.|.+||+.+++...... .  ...++...+.+++|+|+|++|++++. ++.|.+||+.+  
T Consensus       191 ~~s~dg---~~l~~~~~~~~i~~~d~~~~~~~~~~~-~--~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--  262 (353)
T 3vgz_A          191 ALDSEG---KRLYTTNADGELITIDTADNKILSRKK-L--LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN--  262 (353)
T ss_dssp             EEETTT---TEEEEECTTSEEEEEETTTTEEEEEEE-C--CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT--
T ss_pred             EECCCC---CEEEEEcCCCeEEEEECCCCeEEEEEE-c--CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC--
Confidence            899987   578888889999999999876543221 0  11234557889999999998776654 59999999987  


Q ss_pred             CcccccccccccceeEEEEcCCCCEEEEEE-cCCcEEEEeC
Q 009203          501 NKPSQSIRAHQKRVFKAVWHYSHPLLISIS-SDLNIGLHKI  540 (540)
Q Consensus       501 ~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~-~dg~v~iw~l  540 (540)
                      ++.+..+..+.  ...++|+|+|++++.++ .++.|.+||+
T Consensus       263 ~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          263 GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence            56666555433  36799999999665555 7899999985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=1.5e-19  Score=175.62  Aligned_cols=250  Identities=10%  Similarity=0.036  Sum_probs=165.5

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecC-CCCCceeEEeecCCCCcccceeEEEEeCCCCCE--EEEEe-----
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN-KTKGRACVTFLDDKPHVKGIINSIIFLPWENPC--FATGG-----  346 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~--l~s~~-----  346 (540)
                      ..+..++|+|+|++|+++    +.+ .|.+|++. ++   ........ .. .+.+.+++|+| ++++  ++++.     
T Consensus        40 ~~~~~~a~spdg~~l~~~----~~~-~v~~~~~~~~g---~~~~~~~~-~~-~g~~~~~~~sp-dg~~l~~~~~~~~~~~  108 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGA----AMK-KWSSFAVKSPT---EIVHEASH-PI-GGHPRANDADT-NTRAIFLLAAKQPPYA  108 (365)
T ss_dssp             CCCSEEEECTTSSEEEEE----EBT-EEEEEEEEETT---EEEEEEEE-EC-CSSGGGGCTTS-CCEEEEEEECSSTTCC
T ss_pred             CCCcEEEECCCCCEEEEE----ccc-eEEEEEECCCC---CEEEeeEe-ec-CCCCccEEECC-CCCEEEEEEecCCcce
Confidence            457789999999999887    556 99999997 54   22222211 00 12355689999 8884  44543     


Q ss_pred             --------cCCcEEEEecCC-CCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECC-CCCeee--eec
Q 009203          347 --------SDHAVVLWSERD-AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAG-VGRADF--KHQ  413 (540)
Q Consensus       347 --------~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~-~~~~~~--~~~  413 (540)
                              .++.+.+|++.. ++.......+. ..+...+.+++|+|+|++++++.. ++.|++||+. +++...  ...
T Consensus       109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~  187 (365)
T 1jof_A          109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYE-YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD  187 (365)
T ss_dssp             EEEEEESSSCCEEEEEEECTTCCEEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred             eccceeecCCceEEEEccCCCCcCcceEeeEE-eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe
Confidence                    689999999974 44211111110 124567899999999998887664 6799999998 676532  222


Q ss_pred             ---cCccEEEEeecCCCCCceEEEEEc-CCCeEEEEECC--CCccee--eeec-cccccCcccc------CeEEEE-EcC
Q 009203          414 ---IESKCMSVLPNPCDFNLFMVQTGT-PGRQLRLYDIR--LRQTEI--HAFG-WKQESSESQS------ALINQS-WSP  477 (540)
Q Consensus       414 ---~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~--~~~~~~--~~~~-~~~~~~~~~~------~v~~~~-~sp  477 (540)
                         .......+.|+|++   .++++++ .++.|.+|++.  ++....  ..+. ......+|..      .+..++ |+|
T Consensus       188 ~~~~g~~p~~~~~spdg---~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp  264 (365)
T 1jof_A          188 APDPGDHPRWVAMHPTG---NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF  264 (365)
T ss_dssp             CSSTTCCEEEEEECTTS---SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred             cCCCCCCCCEeEECCCC---CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC
Confidence               14567889999988   5665554 57899999876  333211  1111 1111123332      588999 999


Q ss_pred             CCCEEEEEeCCC------cEEEEeccCCCCcccc---cccccccceeEEEEcC---CCCEEEEEEcC-CcEEEEeC
Q 009203          478 DGLYITSGSADP------VIHLFDIRYSANKPSQ---SIRAHQKRVFKAVWHY---SHPLLISISSD-LNIGLHKI  540 (540)
Q Consensus       478 ~g~~l~sg~~dg------~i~iwd~~~~~~~~~~---~~~~h~~~i~~l~~s~---~~~~l~s~~~d-g~v~iw~l  540 (540)
                      ||++|++++.+.      .|.+|++... ++...   ....+...+..++|+|   ||++|++++.+ +.|.||++
T Consensus       265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~-g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          265 SGKYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             TSSEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CCCEEEEECCCCCCCCCCeEEEEEECCC-CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            999988765432      8999999731 44332   1333445678899999   89999998865 89999974

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=1.3e-19  Score=177.56  Aligned_cols=284  Identities=9%  Similarity=0.007  Sum_probs=184.7

Q ss_pred             ccccCceEE-----EEEecCCCcEEEEEeC-Cce--EEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEE
Q 009203          220 SLHKRKLRS-----LSLNPVNEQLFVTSAL-DGV--IRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFS  291 (540)
Q Consensus       220 ~~h~~~V~~-----l~~spd~~~~l~tg~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s  291 (540)
                      ..|......     .+|+|| |++|+.++. +|.  |.+||+.+++.....        .++...+..++|+|||+.|+.
T Consensus        27 t~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt--------~~~~~~~~~~~~spdg~~l~~   97 (388)
T 3pe7_A           27 TPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDLNTQVATQLT--------EGRGDNTFGGFLSPDDDALFY   97 (388)
T ss_dssp             SCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTCEEEECC--------CSSCBCSSSCEECTTSSEEEE
T ss_pred             cCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeCCCCceEEee--------eCCCCCccceEEcCCCCEEEE
Confidence            445555555     889997 887887776 674  777888776532222        345555667899999999999


Q ss_pred             EeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEE--EEeCCCCCEEEEEe----------------------c
Q 009203          292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSI--IFLPWENPCFATGG----------------------S  347 (540)
Q Consensus       292 ~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~p~~~~~l~s~~----------------------~  347 (540)
                      +    +.++.|++||+.++..   ......   +...+...  .++| ++.+++...                      .
T Consensus        98 ~----~~~~~l~~~d~~~g~~---~~~~~~---~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (388)
T 3pe7_A           98 V----KDGRNLMRVDLATLEE---NVVYQV---PAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP  166 (388)
T ss_dssp             E----ETTTEEEEEETTTCCE---EEEEEC---CTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred             E----eCCCeEEEEECCCCcc---eeeeec---hhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCC
Confidence            8    7889999999998732   222222   12334333  3478 888877432                      3


Q ss_pred             CCcEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCC------CeEEEEECCCCCeeeeeccC--ccE
Q 009203          348 DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGAD------KRIIGFDAGVGRADFKHQIE--SKC  418 (540)
Q Consensus       348 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~--~~~  418 (540)
                      +..|++||+.+++.    ..+.  .+...+..+.|+| +|+.|+.+..+      ..|.++|+..+.........  ..+
T Consensus       167 ~~~l~~~d~~~g~~----~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~  240 (388)
T 3pe7_A          167 CCRLMRVDLKTGES----TVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESC  240 (388)
T ss_dssp             CEEEEEEETTTCCE----EEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEE
T ss_pred             cceEEEEECCCCce----EEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccc
Confidence            46799999998863    3333  2556789999999 99998887763      37888898766543333322  346


Q ss_pred             EEEeecCCCCCceEEEEEcC-C---CeEEEEECCCCcceeeeeccccccCcccc---CeEEEEEcCCCCEEEEE------
Q 009203          419 MSVLPNPCDFNLFMVQTGTP-G---RQLRLYDIRLRQTEIHAFGWKQESSESQS---ALINQSWSPDGLYITSG------  485 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~-d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~sg------  485 (540)
                      ....|+|++..  ++++... +   ..|++||+.+++.....     ...++..   ....+.|+|||+.|+..      
T Consensus       241 ~~~~~spdg~~--l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  313 (388)
T 3pe7_A          241 THEFWVPDGSA--LVYVSYLKGSPDRFIYSADPETLENRQLT-----SMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSG  313 (388)
T ss_dssp             EEEEECTTSSC--EEEEEEETTCCCEEEEEECTTTCCEEEEE-----EECCEEEEEECTTSSEEEEEECCC---------
T ss_pred             ccceECCCCCE--EEEEecCCCCCcceEEEEecCCCceEEEE-----cCCCceeeeecCCCCeEccCCCcceeEeeeccc
Confidence            67889998842  2232222 2   24999999987642211     1111100   01223799999988754      


Q ss_pred             ---eCCCcEEEEeccCCCCccccccccccc-----------ceeEEEEcCCCCEEEEEE-cCCcEEEEe
Q 009203          486 ---SADPVIHLFDIRYSANKPSQSIRAHQK-----------RVFKAVWHYSHPLLISIS-SDLNIGLHK  539 (540)
Q Consensus       486 ---~~dg~i~iwd~~~~~~~~~~~~~~h~~-----------~i~~l~~s~~~~~l~s~~-~dg~v~iw~  539 (540)
                         ..+..|++||+.+  +. +..+..|..           .+.+++|+|||+.|+.++ .+|...||.
T Consensus       314 ~~~~~~~~i~~~d~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~  379 (388)
T 3pe7_A          314 YKIENDPFLYVFNMKN--GT-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL  379 (388)
T ss_dssp             ---CCCCEEEEEETTT--TE-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cccCCCCEEEEEeccC--Cc-eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence               4567899999986  33 344555554           578899999999877665 567777775

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.85  E-value=9.4e-20  Score=180.46  Aligned_cols=215  Identities=10%  Similarity=-0.015  Sum_probs=150.9

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC-------ceeEEeecC--CCCcccceeEEEEeCCCCCEEE--
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG-------RACVTFLDD--KPHVKGIINSIIFLPWENPCFA--  343 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~--  343 (540)
                      ..++.+++++++.+++++    +.++ +++|+......       ...+.....  ...+.+.|.+++|+| ++++|+  
T Consensus        37 ~~~n~lavs~~~~~l~~~----~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~  110 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAG----GASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSAC  110 (434)
T ss_dssp             SCCBCEEEETTTTEEEEE----ETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEE
T ss_pred             CCccEEEEecCCCEEEEE----CCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEE
Confidence            347889999999999998    7777 88887542100       001111100  002346799999999 899998  


Q ss_pred             --EEecCCcEEEEecCCC-----CCccccc-eeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeee-ec
Q 009203          344 --TGGSDHAVVLWSERDA-----EDSWKPK-ALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFK-HQ  413 (540)
Q Consensus       344 --s~~~dg~i~iwd~~~~-----~~~~~~~-~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~-~~  413 (540)
                        +|+.|+.|+|||+.++     +...... .....+|...|.+++|+|+ +.+|++++.||+|++||++++..... ..
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~  190 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP  190 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC
Confidence              7888999999999764     1100011 1122458999999999997 88999999999999999998865443 33


Q ss_pred             cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCc--
Q 009203          414 IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG-SADPV--  490 (540)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~--  490 (540)
                      +...+.+++|+|++   .+|++|+.||.|++||++ +...............|...|.+++|++++.++++. ..||.  
T Consensus       191 ~~~~v~~v~wspdg---~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~  266 (434)
T 2oit_A          191 STVAVTSVCWSPKG---KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE  266 (434)
T ss_dssp             GGGCEEEEEECTTS---SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred             CCCceeEEEEcCCC---CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence            46789999999987   689999999999999998 332221111111112345589999999998887643 34433  


Q ss_pred             ----EEEEeccCC
Q 009203          491 ----IHLFDIRYS  499 (540)
Q Consensus       491 ----i~iwd~~~~  499 (540)
                          +++|++...
T Consensus       267 ~~~~v~i~~l~~~  279 (434)
T 2oit_A          267 TSPDVVMALLPKK  279 (434)
T ss_dssp             SCCEEEEEECCCT
T ss_pred             CCCceEEEEeccC
Confidence                899999863

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=6.3e-20  Score=189.94  Aligned_cols=233  Identities=7%  Similarity=-0.004  Sum_probs=168.1

Q ss_pred             CCCceeEEEecCCCeEEEEeecCCC-CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---CC
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSG-DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---DH  349 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg  349 (540)
                      ..+|.+++|+|||+.||++    +. ||++.||++.++   ...+...   ++...+..++|+| + .++++++.   +.
T Consensus        21 ~~~~~~~~~~~DG~~la~~----s~~~g~~~lw~~~~g---~~~~lt~---~~~~~~~~~~~sp-d-~~l~~~~~~~g~~   88 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVV----GFSEGSVNAYLYDGG---ETVKLNR---EPINSVLDPHYGV-G-RVILVRDVSKGAE   88 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEE----EEETTEEEEEEEETT---EEEECCS---SCCSEECEECTTC-S-EEEEEEECSTTSC
T ss_pred             ccchheeecCCCCCeEEEE----EccCCceeEEEEcCC---CcEeeec---ccccccccccCCC-C-eEEEEeccCCCCc
Confidence            3568999999999999988    55 999999998654   3333332   2335689999999 7 67777765   45


Q ss_pred             cEEEEecCC--CCCccccceeecccCCcceeEEEeccCCCE-EEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCC
Q 009203          350 AVVLWSERD--AEDSWKPKALHRNLHSSAVMGVAGMQQKQI-VLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPC  426 (540)
Q Consensus       350 ~i~iwd~~~--~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  426 (540)
                      ...+|.+..  ...   ...+.   ....+...+|+|+|+. +++.+.++.+.+||+.+++.........  .++.|+|+
T Consensus        89 ~~~l~~~~~~~~g~---~~~l~---~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spD  160 (582)
T 3o4h_A           89 QHALFKVNTSRPGE---EQRLE---AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIR  160 (582)
T ss_dssp             CEEEEEEETTSTTC---CEECT---TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEE
T ss_pred             ceEEEEEeccCCCc---ccccc---CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCC
Confidence            556655543  221   11111   2223446688888753 3333444455699999887654443333  77889998


Q ss_pred             CCCceEEEEEcCC----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC--cEEEEeccCCC
Q 009203          427 DFNLFMVQTGTPG----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP--VIHLFDIRYSA  500 (540)
Q Consensus       427 ~~~~~~l~~~~~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg--~i~iwd~~~~~  500 (540)
                      +   .+|++++.+    +.|++||+.+++..        .+..|...+..++|||||++|+++..++  .|++||+.+  
T Consensus       161 G---~~la~~~~~~~~~~~i~~~d~~~g~~~--------~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~--  227 (582)
T 3o4h_A          161 G---DLIAGLGFFGGGRVSLFTSNLSSGGLR--------VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD--  227 (582)
T ss_dssp             T---TEEEEEEEEETTEEEEEEEETTTCCCE--------EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT--
T ss_pred             C---CEEEEEEEcCCCCeEEEEEcCCCCCce--------EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC--
Confidence            8   678877666    78999999877642        2345677889999999999999888888  899999987  


Q ss_pred             CcccccccccccceeEEE--------EcCCCCEEEEEEcCCcEEEEeC
Q 009203          501 NKPSQSIRAHQKRVFKAV--------WHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       501 ~~~~~~~~~h~~~i~~l~--------~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +... .+..|...+..++        |+|||.++++++.||.+++|++
T Consensus       228 ~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          228 GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            4444 6667777777777        9999999999999999999985

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=2.5e-18  Score=182.87  Aligned_cols=275  Identities=11%  Similarity=0.026  Sum_probs=175.8

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC---
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD---  299 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d---  299 (540)
                      .....+++|+|| +.+|+++  |++|++||+.+++....+.....   ..+......++|||||++|+.+    +.+   
T Consensus        16 ~~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Spdg~~l~~~----~~~~~~   85 (740)
T 4a5s_A           16 RLKLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSSVFLENSTF---DEFGHSINDYSISPDGQFILLE----YNYVKQ   85 (740)
T ss_dssp             CCCCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEEEEECTTTT---TTCCSCCCEEEECTTSSEEEEE----EEEEEC
T ss_pred             cccccccEECCC-CcEEEEc--CCcEEEEECCCCceEEEEechhh---hhhcccccceEECCCCCEEEEE----ECCeee
Confidence            345678999996 8888886  99999999999876433321110   1111223458999999999998    443   


Q ss_pred             ------CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccC
Q 009203          300 ------SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLH  373 (540)
Q Consensus       300 ------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  373 (540)
                            +.+.+||+.++   ... .+..   +.+.+..++|+| ||+.|+.+. |+.|++||+.++..    ..+...++
T Consensus        86 ~r~~~~~~~~~~d~~~~---~~~-~l~~---~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~----~~lt~~g~  152 (740)
T 4a5s_A           86 WRHSYTASYDIYDLNKR---QLI-TEER---IPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPS----YRITWTGK  152 (740)
T ss_dssp             SSSCEEEEEEEEETTTT---EEC-CSSC---CCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCC----EECCSCCB
T ss_pred             EEEccceEEEEEECCCC---cEE-Eccc---CCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCce----EEEcCCCC
Confidence                  67789999986   222 2332   346799999999 999998885 68999999988763    23322233


Q ss_pred             Ccc-----------------eeEEEeccCCCEEEEEeCCC------------------------------------eEEE
Q 009203          374 SSA-----------------VMGVAGMQQKQIVLSAGADK------------------------------------RIIG  400 (540)
Q Consensus       374 ~~~-----------------v~~l~~s~~~~~l~~~~~dg------------------------------------~i~i  400 (540)
                      ...                 ...+.|||||+.|+.++.|.                                    .|++
T Consensus       153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v  232 (740)
T 4a5s_A          153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV  232 (740)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence            222                 23589999999999875321                                    5888


Q ss_pred             EECCC---C---Ceeeeec------cCccEEEEeecCCCCCceEEEEE----cCCCeEEEEECCCCc----ceeeeeccc
Q 009203          401 FDAGV---G---RADFKHQ------IESKCMSVLPNPCDFNLFMVQTG----TPGRQLRLYDIRLRQ----TEIHAFGWK  460 (540)
Q Consensus       401 wd~~~---~---~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~----~~dg~v~i~d~~~~~----~~~~~~~~~  460 (540)
                      ||+.+   +   +......      ....+..+.|+|++   .+++..    ..+..|.+||+.+++    +....   .
T Consensus       233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg---~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~---~  306 (740)
T 4a5s_A          233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE---RISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR---Q  306 (740)
T ss_dssp             EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT---EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG---C
T ss_pred             EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC---eEEEEEeCCCCCEEEEEEEECCCCccccceeEEE---E
Confidence            99988   7   3322221      44567789999988   444443    223479999998876    21100   0


Q ss_pred             cccCccccCeE-----EEEEcCCCCEEE-EEe-CCC--cEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          461 QESSESQSALI-----NQSWSPDGLYIT-SGS-ADP--VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       461 ~~~~~~~~~v~-----~~~~sp~g~~l~-sg~-~dg--~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ....+|...|.     .++|+|||+.|+ ..+ .+|  .|++||+..  +. ...+......|..+.+ +|++.|+..+
T Consensus       307 l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~--~~-~~~lT~g~~~v~~~~~-~d~~~i~f~~  381 (740)
T 4a5s_A          307 HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK--KD-CTFITKGTWEVIGIEA-LTSDYLYYIS  381 (740)
T ss_dssp             EEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC--SS-CEESCCSSSCEEEEEE-ECSSEEEEEE
T ss_pred             eeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC--Cc-eEecccCCEEEEEEEE-EeCCEEEEEE
Confidence            00023444443     688999999877 555 344  577788775  23 3334333445555442 3465544443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=1e-17  Score=176.25  Aligned_cols=293  Identities=11%  Similarity=-0.029  Sum_probs=191.8

Q ss_pred             hcccccCceEEEEEecCCCcEEEEE--eCCceEEEEEcCCCCCcceeecccccCCCCCCCCce---------eEEEe--c
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTS--ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE---------DIAWH--P  284 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg--~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~~~~~--~  284 (540)
                      .+.+|...|..++|+++ +.++++.  +.++...||....+.....+        ..|...+.         ...|+  |
T Consensus        18 ~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~~~SP   88 (662)
T 3azo_A           18 LVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEESA--------LPAPWNVRNRVFEYSGFPWAGVPRP   88 (662)
T ss_dssp             HHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSCEEES--------SCTTCCBCCCGGGTCCCCEEEECCS
T ss_pred             HHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCCccee--------CCCCccccccccccCCccceeeeec
Confidence            46789999999999985 6666766  56889999997544433333        23334444         56676  9


Q ss_pred             CCCe-EEEEeecCCCCCeEEEEecC--C-CCCceeEEeecCCC--CcccceeEEEEeCCCCCEEEEEecC----------
Q 009203          285 QGNS-LFSAHTADSGDSQISVLNLN--K-TKGRACVTFLDDKP--HVKGIINSIIFLPWENPCFATGGSD----------  348 (540)
Q Consensus       285 ~~~~-l~s~~~~~~~d~~i~vwd~~--~-~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~~~d----------  348 (540)
                      ||+. |+.+.   ..+..|.+|++.  . +.    ...+...+  .+...+.+++|+| +++.|++++.+          
T Consensus        89 Dg~~~la~~~---~~~~~l~~~~~~~~g~~~----~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           89 AGGPLLVFTH---FGDQRLYAFEPDAPGGAV----PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             SSSCEEEEEB---TTTCCEEEECTTSTTCCC----CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEE
T ss_pred             CCCeEEEEEE---CCCCeEEEEcCCCCCCCC----CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCce
Confidence            9998 77651   336677777776  2 32    22222211  0345688999999 99999988876          


Q ss_pred             CcEEEEecCC------CCCccccceeecccCCcceeEEEeccCCCEEEEEeCC--------CeEEEEECC-CC---Ceee
Q 009203          349 HAVVLWSERD------AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD--------KRIIGFDAG-VG---RADF  410 (540)
Q Consensus       349 g~i~iwd~~~------~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~  410 (540)
                      ..|++||+.+      +..    ..+. ..+...+..++|+|||++|+.++.+        ..|++||+. ++   ....
T Consensus       161 ~~i~~~~~~~~~~~~~~~~----~~l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~  235 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAV----RELS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT  235 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGS----EESS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred             eEEEEEECCCCccccCCce----eEEE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence            5899999988      542    3332 0345678899999999999988755        379999998 56   3333


Q ss_pred             eec-cCccEEEEeecCCCCCceEEEEEcCCC--eEEEEECCCCcceeeeeccccccCc--cccCeEEEEEcCCCCEEEEE
Q 009203          411 KHQ-IESKCMSVLPNPCDFNLFMVQTGTPGR--QLRLYDIRLRQTEIHAFGWKQESSE--SQSALINQSWSPDGLYITSG  485 (540)
Q Consensus       411 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~sg  485 (540)
                      ... ....+..+.|+|++   .+++++..++  .|.+||+.+++... ..........  -.-.+..++|+|++.+++++
T Consensus       236 l~~~~~~~~~~~~~spdg---~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          236 LLGGPEEAIAQAEWAPDG---SLIVATDRTGWWNLHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             EEEETTBCEEEEEECTTS---CEEEEECTTSSCEEEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             eCCCCCceEcceEECCCC---eEEEEECCCCCeEEEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEE
Confidence            332 24677889999988   5677777788  66667765554221 1100000000  00015678999999999999


Q ss_pred             eCCCcEEEEeccCCCCcccccccccccceeEE-EEcCCCCEEEEEEcCCcEEEE
Q 009203          486 SADPVIHLFDIRYSANKPSQSIRAHQKRVFKA-VWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       486 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l-~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      +. +.++||.++.. ...+..+..|...+..+ +++.+.-++++++.+....||
T Consensus       312 ~~-~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          312 GK-GAAVLGILDPE-SGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             BS-SSCEEEEEETT-TTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             Ec-CccEEEEEECC-CCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            98 99999955532 23356677777777777 554433345555666555555

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=5.8e-18  Score=163.07  Aligned_cols=277  Identities=11%  Similarity=0.084  Sum_probs=170.5

Q ss_pred             eEEecCCCCeEEEeccc-----hhccccc-CceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHK-RKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK  272 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~-~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  272 (540)
                      .++++..+++|.+|+..     ..+..+. ..+..++|+|| ++ +++++..++.|.+||+.+++....+......  ..
T Consensus        13 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~--~~   89 (349)
T 1jmx_B           13 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP--GE   89 (349)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEESCCST--TE
T ss_pred             EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc--cc
Confidence            35566678899999764     1233232 26889999997 65 5566667899999999887655444211000  00


Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCC------------CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGD------------SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP  340 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  340 (540)
                      +...+.+++|+|+|++|+++    +.+            +.|.+||+.++.....+..+..    ...+.+++|+| +++
T Consensus        90 ~~~~~~~~~~spdg~~l~~~----~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~-dg~  160 (349)
T 1jmx_B           90 VGRSMYSFAISPDGKEVYAT----VNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM----PRQVYLMRAAD-DGS  160 (349)
T ss_dssp             EEECSSCEEECTTSSEEEEE----EEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC----CSSCCCEEECT-TSC
T ss_pred             ccccccceEECCCCCEEEEE----cccccccccccccCCCeEEEEECCCccccceeeeccC----CCcccceeECC-CCc
Confidence            02347889999999999998    543            8999999987533233333332    23588999999 888


Q ss_pred             EEEEEecCCcEEEEecCCCCCccccceeeccc--C----------------C----cceeEEEeccCCCEEEEEeC-CCe
Q 009203          341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNL--H----------------S----SAVMGVAGMQQKQIVLSAGA-DKR  397 (540)
Q Consensus       341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~----------------~----~~v~~l~~s~~~~~l~~~~~-dg~  397 (540)
                       +++++  +.|.+||+.+++...   .+....  .                .    ....++++++++........ ...
T Consensus       161 -l~~~~--~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          161 -LYVAG--PDIYKMDVKTGKYTV---ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             -EEEES--SSEEEECTTTCCEEE---EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             -EEEcc--CcEEEEeCCCCceec---cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence             55554  349999998876422   111100  0                0    02344666654421100000 011


Q ss_pred             EEEEECCCCCeeee--eccCccEEEEeecC-CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEE
Q 009203          398 IIGFDAGVGRADFK--HQIESKCMSVLPNP-CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQS  474 (540)
Q Consensus       398 i~iwd~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~  474 (540)
                      +..+|..+++....  .........+.++| ++   .+++++  ++.|.+||+.+++......        ....+.+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg---~~l~~~--~~~v~~~d~~~~~~~~~~~--------~~~~~~~~~  301 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP---NQIYGV--LNRLAKYDLKQRKLIKAAN--------LDHTYYCVA  301 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCT---TEEEEE--ESEEEEEETTTTEEEEEEE--------CSSCCCEEE
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCC---CEEEEE--cCeEEEEECccCeEEEEEc--------CCCCccceE
Confidence            22244444433111  12345677888999 77   466666  8899999999876433211        123467899


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203          475 WSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       475 ~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  509 (540)
                      |+|+|++|++++.++.|.+||+.+  ++.+..+..
T Consensus       302 ~s~dg~~l~~~~~~~~v~v~d~~~--~~~~~~~~~  334 (349)
T 1jmx_B          302 FDKKGDKLYLGGTFNDLAVFNPDT--LEKVKNIKL  334 (349)
T ss_dssp             ECSSSSCEEEESBSSEEEEEETTT--TEEEEEEEC
T ss_pred             ECCCCCEEEEecCCCeEEEEeccc--cceeeeeec
Confidence            999999999888899999999987  565555543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=8.6e-17  Score=150.37  Aligned_cols=243  Identities=11%  Similarity=0.136  Sum_probs=173.6

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC---CCcccceeEEEEeCCCCCEEEEEec
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK---PHVKGIINSIIFLPWENPCFATGGS  347 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~~~  347 (540)
                      .++...+.+++++++|.++++.    ..++.|.+||.. +   ..+..+...   ..+...+.++++.+.++.++++...
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~----~~~~~i~~~d~~-g---~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~   97 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVAD----TNNHRIQIFDKE-G---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS   97 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEE----GGGTEEEEECTT-S---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred             CCccCCCceEEECCCCCEEEEE----CCCCEEEEECCC-C---cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC
Confidence            3556678899999999988887    789999999987 3   223333221   1233468899995327776666643


Q ss_pred             -CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec---cCccEEEEee
Q 009203          348 -DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ---IESKCMSVLP  423 (540)
Q Consensus       348 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~  423 (540)
                       ++.|.+||. +++.   ...+ ...+...+.+++++++|+++++...++.|.+||.. ++.+....   .......+++
T Consensus        98 ~~~~i~~~d~-~g~~---~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~  171 (286)
T 1q7f_A           98 PTHQIQIYNQ-YGQF---VRKF-GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVV  171 (286)
T ss_dssp             GGCEEEEECT-TSCE---EEEE-CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEE
T ss_pred             CCCEEEEECC-CCcE---EEEe-cCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEE
Confidence             789999994 4442   1222 12244578999999999988888888999999975 55444432   2345788999


Q ss_pred             cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-cEEEEeccCCCCc
Q 009203          424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-VIHLFDIRYSANK  502 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-~i~iwd~~~~~~~  502 (540)
                      ++++   .++++...++.|++||....  ....+.    ..++...+.+++++++|+++++...++ .|.+||..   +.
T Consensus       172 ~~~g---~l~v~~~~~~~i~~~~~~g~--~~~~~~----~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~---g~  239 (286)
T 1q7f_A          172 NDKQ---EIFISDNRAHCVKVFNYEGQ--YLRQIG----GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD---GQ  239 (286)
T ss_dssp             CSSS---EEEEEEGGGTEEEEEETTCC--EEEEES----CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT---SC
T ss_pred             CCCC---CEEEEECCCCEEEEEcCCCC--EEEEEc----cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC---CC
Confidence            9977   67777788999999998533  222221    122335789999999999888888776 99999965   55


Q ss_pred             cccccccccc--ceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          503 PSQSIRAHQK--RVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       503 ~~~~~~~h~~--~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .+..+..+..  .+.+++++|+|+++++ +.|++|++|++
T Consensus       240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          240 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence            5666654432  4789999999987777 67999999985

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=3e-17  Score=158.50  Aligned_cols=289  Identities=10%  Similarity=0.058  Sum_probs=190.2

Q ss_pred             CCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCC
Q 009203          206 SPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLS  270 (540)
Q Consensus       206 ~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~  270 (540)
                      .|+.|.+||..     ..+..+..+  .++|+|| +++|+++.          .++.|.+||..+.+...++......  
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~--  103 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR--  103 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB--
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc--
Confidence            36677777643     223444455  8999996 88777775          3678999999887766665432110  


Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEe-ecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTF-LDDKPHVKGIINSIIFLPWENPCFATGGSDH  349 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  349 (540)
                      ..+......++|+|||++|+++..  +.++.|.+||+.++   +.+.. +..     .....+.+.|.....+++.+.||
T Consensus       104 ~~~g~~p~~i~~spdg~~l~v~n~--~~~~~v~v~d~~~~---~~~~~~i~~-----~~~~~v~~~p~~~~~~~~~~~dg  173 (361)
T 2oiz_A          104 VQGLNYDGLFRQTTDGKFIVLQNA--SPATSIGIVDVAKG---DYVEDVTAA-----AGCWSVIPQPNRPRSFMTICGDG  173 (361)
T ss_dssp             CCBCCCGGGEEECTTSSEEEEEEE--SSSEEEEEEETTTT---EEEEEEGGG-----TTEEEEEECTTSSSEEEEEETTS
T ss_pred             cccCCCcceEEECCCCCEEEEECC--CCCCeEEEEECCCC---cEEEEEecC-----CCcceeEEcCCCCeeEEEECCCC
Confidence            112345788999999999998711  13689999999986   44554 432     12344667784457888889999


Q ss_pred             cEEEEecCC-CCCccccce-eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--ecc-----------
Q 009203          350 AVVLWSERD-AEDSWKPKA-LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQI-----------  414 (540)
Q Consensus       350 ~i~iwd~~~-~~~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-----------  414 (540)
                      .+.+|++.. ++....... ........+ ..+.+++++..++..+.++.|.++|+..+.....  ...           
T Consensus       174 ~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  252 (361)
T 2oiz_A          174 GLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV  252 (361)
T ss_dssp             SEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE
T ss_pred             cEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc
Confidence            999999875 332100000 000111222 2344567888888888899999999976543211  110           


Q ss_pred             CccEEEEeecCCCCCceEEEEEc----------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE
Q 009203          415 ESKCMSVLPNPCDFNLFMVQTGT----------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS  484 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~~----------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s  484 (540)
                      ......+.++|++.  .++++..          ..+.|.+||+.+.+....       +..+.  +.+++|+|||++|++
T Consensus       253 p~g~~~~a~~~dg~--~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~-------i~~~~--p~~ia~spdg~~l~v  321 (361)
T 2oiz_A          253 PGGYNLVGLHRASG--RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR-------IPGRD--ALSMTIDQQRNLMLT  321 (361)
T ss_dssp             ECCSSCEEEETTTT--EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE-------EECTT--CCEEEEETTTTEEEE
T ss_pred             cCCeeEEEEecCCC--eEEEEEccCCCcccccCCCceEEEEECCCCcEEEE-------EecCC--eeEEEECCCCCEEEE
Confidence            01111256777753  2333332          135899999998875432       22333  899999999999998


Q ss_pred             EeCCCcEEEEeccCCCC--cccccccccccceeEEEEcCCCC
Q 009203          485 GSADPVIHLFDIRYSAN--KPSQSIRAHQKRVFKAVWHYSHP  524 (540)
Q Consensus       485 g~~dg~i~iwd~~~~~~--~~~~~~~~h~~~i~~l~~s~~~~  524 (540)
                      ++. +.|.+||..+  +  +.+..+..+......++++|+|.
T Consensus       322 ~n~-~~v~v~D~~t--~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          322 LDG-GNVNVYDISQ--PEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             ECS-SCEEEEECSS--SSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             eCC-CeEEEEECCC--CcceeeEEeccCCCCcEEEEecCCCC
Confidence            887 9999999998  6  78888766777789999999985

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.79  E-value=7.5e-17  Score=153.97  Aligned_cols=243  Identities=14%  Similarity=0.118  Sum_probs=177.7

Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCC------------------------CeEEEEecCCCCCceeEEeecCCCCcccce
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGD------------------------SQISVLNLNKTKGRACVTFLDDKPHVKGII  329 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v  329 (540)
                      ...+.+++++++|+++++.    ..+                        +.|.+||..++   ..+..+..  .+-..+
T Consensus        23 l~~v~~va~d~~G~l~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~--~~~~~p   93 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFH----RGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGK--NLFYLP   93 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEE----CTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECT--TTCSSE
T ss_pred             cCCceEEEECCCCCEEEEe----CCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCC--CccCCc
Confidence            3568999999999998887    555                        47999999876   33444332  223468


Q ss_pred             eEEEEeCCCCCEEEEEecCCcEEEEecCCCC-Cccccceeec-------ccCCcceeEEEecc-CCCEEEEEe-CCCeEE
Q 009203          330 NSIIFLPWENPCFATGGSDHAVVLWSERDAE-DSWKPKALHR-------NLHSSAVMGVAGMQ-QKQIVLSAG-ADKRII  399 (540)
Q Consensus       330 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~-------~~~~~~v~~l~~s~-~~~~l~~~~-~dg~i~  399 (540)
                      .+++++| +++++++...++.|++||..... .   ...+..       ..+.....+++++| +|.++++.+ .++.|+
T Consensus        94 ~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~---~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A           94 HGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGP---LLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             EEEEECT-TSCEEEEETTTTEEEEECTTCSSCC---SEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred             eEEEECC-CCCEEEEECCCCEEEEEeCCCCeEE---EEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence            8999999 99988988889999999987652 1   122211       23445789999999 788888886 689999


Q ss_pred             EEECCCCCeeeeeccC-----------ccEEEEeecCC-CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc
Q 009203          400 GFDAGVGRADFKHQIE-----------SKCMSVLPNPC-DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ  467 (540)
Q Consensus       400 iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  467 (540)
                      +||. ++..+......           .....++++|+ +   .++++...++.|++||..+++.... +    ....+.
T Consensus       170 ~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g---~l~v~d~~~~~I~~~~~~~G~~~~~-~----~~~~~~  240 (329)
T 3fvz_A          170 QFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD---QLCVADRENGRIQCFKTDTKEFVRE-I----KHASFG  240 (329)
T ss_dssp             EECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT---EEEEEETTTTEEEEEETTTCCEEEE-E----CCTTTT
T ss_pred             EEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC---EEEEEECCCCEEEEEECCCCcEEEE-E----eccccC
Confidence            9994 46665543211           23678899987 5   6888888899999999986654332 2    123455


Q ss_pred             cCeEEEEEcC------CCCEEEEEeCCCcEEEEeccCCCCcccccc---cccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          468 SALINQSWSP------DGLYITSGSADPVIHLFDIRYSANKPSQSI---RAHQKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       468 ~~v~~~~~sp------~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~---~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      ..+.+++|+|      +|+.+++...+..|++|++.+  ++.+..+   ..+...+.+|+++|+|.++++...++.|++|
T Consensus       241 ~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~--g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~  318 (329)
T 3fvz_A          241 RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS--GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF  318 (329)
T ss_dssp             TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT--CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred             CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC--CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence            6788999999      333333334456899999987  6666666   3566779999999999888999999999999


Q ss_pred             eC
Q 009203          539 KI  540 (540)
Q Consensus       539 ~l  540 (540)
                      ++
T Consensus       319 ~~  320 (329)
T 3fvz_A          319 TL  320 (329)
T ss_dssp             EE
T ss_pred             eC
Confidence            74

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.79  E-value=3.5e-17  Score=156.67  Aligned_cols=277  Identities=12%  Similarity=0.012  Sum_probs=187.2

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ..|.+++|+|+ +..++..+.++.++.|.   ++....+        ..+...+.+++|+++|++++++    ..++.|.
T Consensus         6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~g~l~~~~----~~~~~i~   69 (333)
T 2dg1_A            6 QDLPTLFYSGK-SNSAVPIISESELQTIT---AEPWLEI--------SKKGLQLEGLNFDRQGQLFLLD----VFEGNIF   69 (333)
T ss_dssp             CCCCBCCSCGG-GGCSSCCCCGGGSCEEE---CEEEEEE--------ESSCCCEEEEEECTTSCEEEEE----TTTCEEE
T ss_pred             cccceeeecCC-ccceeEEeecccCcccc---cceeEEE--------eccCccccCcEECCCCCEEEEE----CCCCEEE
Confidence            45788899995 67677777888999992   2222222        2344567899999999988887    8899999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC----CcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD----HAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      +||..++.   .......   +...+.+++|+| ++.++++...+    +.|.+||..++...   ..+....+...+.+
T Consensus        70 ~~d~~~~~---~~~~~~~---~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~  139 (333)
T 2dg1_A           70 KINPETKE---IKRPFVS---HKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQ---DIIEDLSTAYCIDD  139 (333)
T ss_dssp             EECTTTCC---EEEEEEC---SSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCE---EEECSSSSCCCEEE
T ss_pred             EEeCCCCc---EEEEeeC---CCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEE---EEEccCccCCcccc
Confidence            99998762   2222211   235699999999 88888877666    68999999887631   11211224467899


Q ss_pred             EEeccCCCEEEEEeC------CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          380 VAGMQQKQIVLSAGA------DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       380 l~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      ++++|+|+++++...      .+.|..||..+++.............+.++|++.  .++++.+.++.|.+||+.+....
T Consensus       140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~--~l~v~~~~~~~i~~~d~~~~g~~  217 (333)
T 2dg1_A          140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK--VLWVTETTANRLHRIALEDDGVT  217 (333)
T ss_dssp             EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS--EEEEEEGGGTEEEEEEECTTSSS
T ss_pred             eEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC--EEEEEeCCCCeEEEEEecCCCcC
Confidence            999999988776654      3567777776655433322234567888999862  24455667889999999642211


Q ss_pred             eeeec--cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc------ceeEEEEcCCCCE
Q 009203          454 IHAFG--WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK------RVFKAVWHYSHPL  525 (540)
Q Consensus       454 ~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~------~i~~l~~s~~~~~  525 (540)
                      ...+.  ....+.++ ..+..++++++|+++++...++.|.+||..   +..+..+..+..      .+.+++|+||+..
T Consensus       218 ~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~---g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~  293 (333)
T 2dg1_A          218 IQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR---GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ  293 (333)
T ss_dssp             EEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT---SCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred             cccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC---CCEEEEEEcCCCccccccCcceEEECCCCCE
Confidence            11110  00011222 467889999999988888788999999985   445555543332      6899999999877


Q ss_pred             EEEEEcC
Q 009203          526 LISISSD  532 (540)
Q Consensus       526 l~s~~~d  532 (540)
                      |+.++.+
T Consensus       294 L~v~~~~  300 (333)
T 2dg1_A          294 LIICSND  300 (333)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeCc
Confidence            7655555

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=1.2e-17  Score=162.08  Aligned_cols=253  Identities=9%  Similarity=0.027  Sum_probs=165.5

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcC-CCCCcceeecccccCCCCCCCCceeEEEecCCCe--EEEEeecCC-
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQ-SRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNS--LFSAHTADS-  297 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~--l~s~~~~~~-  297 (540)
                      +...+..++|+|| +++|++++.+ .|.+|++. +++.......      ..+ +.+.+++|+|+|++  ++++    . 
T Consensus        38 ~~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------~~~-g~~~~~~~spdg~~l~~~~~----~~  104 (365)
T 1jof_A           38 QDEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASH------PIG-GHPRANDADTNTRAIFLLAA----KQ  104 (365)
T ss_dssp             TTCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEE------ECC-SSGGGGCTTSCCEEEEEEEC----SS
T ss_pred             CCCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEe------ecC-CCCccEEECCCCCEEEEEEe----cC
Confidence            3356889999996 8888888887 99999997 5543221111      011 12667999999995  4444    3 


Q ss_pred             ------------CCCeEEEEecCC-CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEecC-CCCCc
Q 009203          298 ------------GDSQISVLNLNK-TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSER-DAEDS  362 (540)
Q Consensus       298 ------------~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~-~~~~~  362 (540)
                                  .++.+.+|++.. +.....+..+..  .+...+.+++|+| ++++|+++.. ++.|++||+. +++..
T Consensus       105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~  181 (365)
T 1jof_A          105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY--QENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVE  181 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC--CTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             CcceeccceeecCCceEEEEccCCCCcCcceEeeEEe--CCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence                        689999999974 321112222211  1235689999999 9988877654 6799999998 66531


Q ss_pred             cccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECC--CCCeee------eeccC----c-------cEEEEe
Q 009203          363 WKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAG--VGRADF------KHQIE----S-------KCMSVL  422 (540)
Q Consensus       363 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~--~~~~~~------~~~~~----~-------~~~~~~  422 (540)
                      . ...+....|...+..++|+|+|+++++++. ++.|.+|++.  +++...      .....    .       ....+.
T Consensus       182 ~-~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  260 (365)
T 1jof_A          182 L-VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             E-EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             E-eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEE
Confidence            0 111111124567899999999999888775 6899999765  455421      11111    1       477899


Q ss_pred             -ecCCCCCceEEEEEcC-CC-----eEEEEECC-CCcceeeeeccccccCccccCeEEEEEcC---CCCEEEEEeCC-Cc
Q 009203          423 -PNPCDFNLFMVQTGTP-GR-----QLRLYDIR-LRQTEIHAFGWKQESSESQSALINQSWSP---DGLYITSGSAD-PV  490 (540)
Q Consensus       423 -~~~~~~~~~~l~~~~~-dg-----~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~sg~~d-g~  490 (540)
                       ++|++   ++|+++.. ++     .|.+|++. ++.. .....   ....+...+..++|+|   ||++|++++.+ +.
T Consensus       261 ~~spdG---~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-~~~~~---~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~  333 (365)
T 1jof_A          261 ALTFSG---KYMFASSRANKFELQGYIAGFKLRDCGSI-EKQLF---LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             EECTTS---SEEEEEEEESSTTSCCEEEEEEECTTSCE-EEEEE---EEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             EECCCC---CEEEEECCCCCCCCCCeEEEEEECCCCCE-EEeee---eeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence             99988   45555443 22     89999996 3332 21100   0112333466789999   89999998764 89


Q ss_pred             EEEEeccC
Q 009203          491 IHLFDIRY  498 (540)
Q Consensus       491 i~iwd~~~  498 (540)
                      |.+|+++.
T Consensus       334 v~v~~~~~  341 (365)
T 1jof_A          334 LEIYRWKD  341 (365)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEch
Confidence            99999985

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=3.7e-18  Score=167.59  Aligned_cols=275  Identities=8%  Similarity=-0.020  Sum_probs=176.2

Q ss_pred             cCceEEEEEecCCCcEEEEEeCC---ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALD---GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      ...+.+++|+|| |++|+.....   ..|.+||+.+++.. .+.       .++......+.|+|||+.|+.+    +.+
T Consensus        35 ~~~~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~-------~~~~~~~~~~~~spdg~~l~~~----~~~  101 (396)
T 3c5m_A           35 RNYFYQKCFTQD-GKKLLFAGDFDGNRNYYLLNLETQQAV-QLT-------EGKGDNTFGGFISTDERAFFYV----KNE  101 (396)
T ss_dssp             CCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTTEEE-ECC-------CSSCBCTTTCEECTTSSEEEEE----ETT
T ss_pred             ceeeecCcCCCC-CCEEEEEEecCCCceEEEEECCCCcEE-Eee-------cCCCCccccceECCCCCEEEEE----EcC
Confidence            344778899997 7777666433   36888888776532 111       1222233448899999999888    778


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeE-------------------EEEeCCCCCEEEEE-----ecCCcEEEEe
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINS-------------------IIFLPWENPCFATG-----GSDHAVVLWS  355 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~p~~~~~l~s~-----~~dg~i~iwd  355 (540)
                      +.|++||+.++..   .......   .+....                   +.|+| +++.++.+     ..+..|++||
T Consensus       102 ~~l~~~d~~~~~~---~~~~~~~---~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d  174 (396)
T 3c5m_A          102 LNLMKVDLETLEE---QVIYTVD---EEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVD  174 (396)
T ss_dssp             TEEEEEETTTCCE---EEEEECC---TTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEE
T ss_pred             CcEEEEECCCCCc---EEEEecc---cccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEE
Confidence            8999999987632   2222211   111111                   34577 66666544     3566899999


Q ss_pred             cCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCC------CeEEEEECCCCCeeeeecc--CccEEEEeecCC
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGAD------KRIIGFDAGVGRADFKHQI--ESKCMSVLPNPC  426 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~  426 (540)
                      +.+++.    ..+.  .+...+..+.|+| ++..|+..+.+      ..|.+||+..+........  ...+..+.|+|+
T Consensus       175 ~~~g~~----~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd  248 (396)
T 3c5m_A          175 IETGEL----EVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPD  248 (396)
T ss_dssp             TTTCCE----EEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTT
T ss_pred             CCCCcE----Eeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCC
Confidence            988763    3332  2566789999999 78877776553      3689999876654333222  235667899998


Q ss_pred             CCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CCCEEEEEe--------------
Q 009203          427 DFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DGLYITSGS--------------  486 (540)
Q Consensus       427 ~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~--------------  486 (540)
                      +   .+|+..+.+     +.|++||+.++......     ...+    .. +.|+| ||++|++++              
T Consensus       249 g---~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-----~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~  315 (396)
T 3c5m_A          249 G---SAMAYVSYFKGQTDRVIYKANPETLENEEVM-----VMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYN  315 (396)
T ss_dssp             S---SCEEEEEEETTTCCEEEEEECTTTCCEEEEE-----ECCS----EE-EEEECSSSSEEEEEECCC----------C
T ss_pred             C---CEEEEEecCCCCccceEEEEECCCCCeEEee-----eCCC----CC-CCccCCCCceEEEecCCcceeeccccccc
Confidence            8   344444322     45999999877642211     1111    22 89999 999888754              


Q ss_pred             --CCCcEEEEeccCCCCccccccccccc-----------ceeEEEEcCCCCEEEEEEc-CCcEEEEe
Q 009203          487 --ADPVIHLFDIRYSANKPSQSIRAHQK-----------RVFKAVWHYSHPLLISISS-DLNIGLHK  539 (540)
Q Consensus       487 --~dg~i~iwd~~~~~~~~~~~~~~h~~-----------~i~~l~~s~~~~~l~s~~~-dg~v~iw~  539 (540)
                        .++.|++||+.++  . ...+..+..           .+..++|+|||+.|+.++. ++...||.
T Consensus       316 ~~~~~~i~~~d~~~~--~-~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          316 IENDPFLYVLNTKAK--S-AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             CCCCCEEEEEETTTT--B-CCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cCCCCcEEEEecccC--c-eEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence              3478999999863  3 234444443           2567899999998877764 56666664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=5e-16  Score=145.18  Aligned_cols=249  Identities=12%  Similarity=0.099  Sum_probs=174.1

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe-cCCCeEEEEeecCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH-PQGNSLFSAHTADSG  298 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~-~~~~~l~s~~~~~~~  298 (540)
                      .+|-..+.+++++|+ +.++++...++.|.+||.. ++....+...  ....+|...+.++++. +++.++++.    ..
T Consensus        26 ~g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~--~~~~~~~~~p~~i~~~~~~g~l~v~~----~~   97 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGEC--GKRDSQLLYPNRVAVVRNSGDIIVTE----RS   97 (286)
T ss_dssp             TTCBSCEEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCB--SSSTTCBSSEEEEEEETTTTEEEEEE----CG
T ss_pred             CCccCCCceEEECCC-CCEEEEECCCCEEEEECCC-CcEEEEeccc--CCCcccccCceEEEEEcCCCeEEEEc----CC
Confidence            467788999999996 8888888889999999987 4433333211  1112455678899995 677666665    43


Q ss_pred             -CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          299 -DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       299 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                       ++.|.+||.. +   ..+..+..  .+...+.+++++| +++++++...++.|.+||.....    ...+....+...+
T Consensus        98 ~~~~i~~~d~~-g---~~~~~~~~--~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~----~~~~~~~~~~~~p  166 (286)
T 1q7f_A           98 PTHQIQIYNQY-G---QFVRKFGA--TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNV----LHKFGCSKHLEFP  166 (286)
T ss_dssp             GGCEEEEECTT-S---CEEEEECT--TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE----EEEEECTTTCSSE
T ss_pred             CCCEEEEECCC-C---cEEEEecC--ccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCCE----EEEeCCCCccCCc
Confidence             8899999944 3   33444432  1234689999999 88888888888999999975432    2222222345678


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCCC-eEEEEECCCCcce
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPGR-QLRLYDIRLRQTE  453 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~  453 (540)
                      .+++++++|+++++...++.|++||.. +..+......   .....+++++++   .++++...++ .|.+||... +. 
T Consensus       167 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G---~l~v~~~~~~~~i~~~~~~g-~~-  240 (286)
T 1q7f_A          167 NGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG---EILIADNHNNFNLTIFTQDG-QL-  240 (286)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTC---CEEEEECSSSCEEEEECTTS-CE-
T ss_pred             EEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCC---CEEEEeCCCCEEEEEECCCC-CE-
Confidence            999999999988888889999999985 4544443322   467889999877   5777777775 999999653 22 


Q ss_pred             eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          454 IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ...+.    .......+.+++++|+|+++++ +.|+.|++|++..
T Consensus       241 ~~~~~----~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          241 ISALE----SKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEEE----ESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             EEEEc----ccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            22221    1112235789999999987777 5799999999875

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=1.3e-17  Score=177.25  Aligned_cols=244  Identities=9%  Similarity=-0.013  Sum_probs=163.2

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC--cccceeEEEEeCCCCCEEEEEecC-----
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH--VKGIINSIIFLPWENPCFATGGSD-----  348 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~s~~~d-----  348 (540)
                      ...+++|+|||.+|++     + |+.|++||+.+++   +...+..+..  .......++|+| |+++|+.++.+     
T Consensus        18 ~~~~~~w~~dg~~~~~-----~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r   87 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYK-----Q-ENNILVFNAEYGN---SSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWR   87 (740)
T ss_dssp             CCCCEEECSSSEEEEE-----E-TTEEEEEETTTCC---EEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSS
T ss_pred             cccccEECCCCcEEEE-----c-CCcEEEEECCCCc---eEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEE
Confidence            3568999999987777     3 8999999999873   3455554321  111234589999 99999998876     


Q ss_pred             ----CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccE----
Q 009203          349 ----HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKC----  418 (540)
Q Consensus       349 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~----  418 (540)
                          +.+.+||+.+++.    ..+  ..+...+...+|||||+.|+.+. ++.|++||+.++........+  ..+    
T Consensus        88 ~~~~~~~~~~d~~~~~~----~~l--~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~  160 (740)
T 4a5s_A           88 HSYTASYDIYDLNKRQL----ITE--ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGI  160 (740)
T ss_dssp             SCEEEEEEEEETTTTEE----CCS--SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred             EccceEEEEEECCCCcE----EEc--ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCc
Confidence                5677999999874    223  33667899999999999999885 679999999887754322111  111    


Q ss_pred             -------------EEEeecCCCCCceEEEEEcCC------------------------------------CeEEEEECCC
Q 009203          419 -------------MSVLPNPCDFNLFMVQTGTPG------------------------------------RQLRLYDIRL  449 (540)
Q Consensus       419 -------------~~~~~~~~~~~~~~l~~~~~d------------------------------------g~v~i~d~~~  449 (540)
                                   .++.|+|++   ..|+.++.|                                    ..|++||+.+
T Consensus       161 ~~~v~~ee~~~~~~~~~wSpDg---~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~  237 (740)
T 4a5s_A          161 TDWVYEEEVFSAYSALWWSPNG---TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS  237 (740)
T ss_dssp             CCHHHHHHTSSSSBCEEECTTS---SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred             ccccccchhcCCCcceEECCCC---CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence                         247899998   566665322                                    1578888887


Q ss_pred             ---Ccc-eeeeeccccccCccccCeEEEEEcCCCCEEEEEeC----CCcEEEEeccCCC----Ccccccc--ccccccee
Q 009203          450 ---RQT-EIHAFGWKQESSESQSALINQSWSPDGLYITSGSA----DPVIHLFDIRYSA----NKPSQSI--RAHQKRVF  515 (540)
Q Consensus       450 ---~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~----dg~i~iwd~~~~~----~~~~~~~--~~h~~~i~  515 (540)
                         +.. ....+.....+.+|...+..++|+|||+.++....    +..|++||+.++.    ...+..+  ..|...|.
T Consensus       238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~  317 (740)
T 4a5s_A          238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG  317 (740)
T ss_dssp             CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS
T ss_pred             CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEc
Confidence               531 11111111111247778999999999997665532    3479999999732    0122223  44665554


Q ss_pred             -----EEEEcCCCCEEE-EEE-cCC--cEEEEe
Q 009203          516 -----KAVWHYSHPLLI-SIS-SDL--NIGLHK  539 (540)
Q Consensus       516 -----~l~~s~~~~~l~-s~~-~dg--~v~iw~  539 (540)
                           .++|+|||+.|+ ..+ .+|  .|++|+
T Consensus       318 ~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~  350 (740)
T 4a5s_A          318 RFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ  350 (740)
T ss_dssp             SSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             cCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence                 789999999776 665 444  466665

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=6.5e-17  Score=156.20  Aligned_cols=271  Identities=6%  Similarity=0.040  Sum_probs=172.2

Q ss_pred             CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee------cCCCCCeEEEEecCCCCCceeEE
Q 009203          244 LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT------ADSGDSQISVLNLNKTKGRACVT  317 (540)
Q Consensus       244 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~------~~~~d~~i~vwd~~~~~~~~~~~  317 (540)
                      .|+.|.+||..+++...++.        .+..+  .++|+|||++|+++..      .|..++.|.+||..+.+....+.
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~--------~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~   98 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVP--------TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS   98 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEE--------CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred             ccCeEEEEECCCCeEEEEec--------CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence            36799999998887655442        22233  7999999999998721      01136789999998763322222


Q ss_pred             eecCCCCcccceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccce-eecccCCcceeEEEeccCC-CEEEEEe
Q 009203          318 FLDDKPHVKGIINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKA-LHRNLHSSAVMGVAGMQQK-QIVLSAG  393 (540)
Q Consensus       318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~~~-~~l~~~~  393 (540)
                      .......+......++|+| ++++|+++..  +++|.+||+.+++.+   .. +.   . .....+.+.|++ ..+++.+
T Consensus        99 ~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~---~~~i~---~-~~~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A           99 LPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYV---EDVTA---A-AGCWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             ECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEE---EEEGG---G-TTEEEEEECTTSSSEEEEEE
T ss_pred             cCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEE---EEEec---C-CCcceeEEcCCCCeeEEEEC
Confidence            2211111123477899999 9999988764  578999999987642   21 11   1 122335566765 6778888


Q ss_pred             CCCeEEEEECCC-CCeeee------eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee-eeecccc----
Q 009203          394 ADKRIIGFDAGV-GRADFK------HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI-HAFGWKQ----  461 (540)
Q Consensus       394 ~dg~i~iwd~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~----  461 (540)
                      .||.+.+|++.. ++....      +........+.+.+++   ..++..+.++.|.++|+....... ..+....    
T Consensus       171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK---DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK  247 (361)
T ss_dssp             TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS---SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred             CCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC---CEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence            999999999865 444311      1111111112223333   244455678899999997554221 1110000    


Q ss_pred             ccCccccCeEEEEEcCCCCEEEEEeC-----------CCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          462 ESSESQSALINQSWSPDGLYITSGSA-----------DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       462 ~~~~~~~~v~~~~~sp~g~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ...-.......++|+|+++.++++..           .+.|.+||+.+  .+.+.++..+.  +.+++|+|||++|++++
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t--~~~v~~i~~~~--p~~ia~spdg~~l~v~n  323 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT--KQRVARIPGRD--ALSMTIDQQRNLMLTLD  323 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT--TEEEEEEECTT--CCEEEEETTTTEEEEEC
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC--CcEEEEEecCC--eeEEEECCCCCEEEEeC
Confidence            00000111223789999888776543           34799999998  78888888776  99999999999999888


Q ss_pred             cCCcEEEEeC
Q 009203          531 SDLNIGLHKI  540 (540)
Q Consensus       531 ~dg~v~iw~l  540 (540)
                      . +.|.+||.
T Consensus       324 ~-~~v~v~D~  332 (361)
T 2oiz_A          324 G-GNVNVYDI  332 (361)
T ss_dssp             S-SCEEEEEC
T ss_pred             C-CeEEEEEC
Confidence            6 99999984

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=1.9e-15  Score=144.19  Aligned_cols=250  Identities=12%  Similarity=0.084  Sum_probs=178.9

Q ss_pred             cCceEEEEEecCCCcEEEEEeCC------------------------ceEEEEEcCCCCCcceeecccccCCCCCCCCce
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALD------------------------GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE  278 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~  278 (540)
                      -+.|.+|+++|+ |+++++...+                        ++|.+||..+++....+.       .++...+.
T Consensus        23 l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------~~~~~~p~   94 (329)
T 3fvz_A           23 PGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-------KNLFYLPH   94 (329)
T ss_dssp             CSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-------TTTCSSEE
T ss_pred             cCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-------CCccCCce
Confidence            367999999996 8888888877                        479999998877543331       24456688


Q ss_pred             eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC------CCcccceeEEEEeCCCCCEEEEEe-cCCcE
Q 009203          279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK------PHVKGIINSIIFLPWENPCFATGG-SDHAV  351 (540)
Q Consensus       279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i  351 (540)
                      .++++++|+++++.    ..++.|++||.....  ..+..+...      ..+-..+.+++++|.++.++++.+ .++.|
T Consensus        95 gia~d~~g~l~v~d----~~~~~v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           95 GLSIDTDGNYWVTD----VALHQVFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             EEEECTTSCEEEEE----TTTTEEEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             EEEECCCCCEEEEE----CCCCEEEEEeCCCCe--EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            99999999988887    889999999986431  123333210      112345889999985677778776 68999


Q ss_pred             EEEecCCCCCccccceeecc--------cCCcceeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeec---cCccEE
Q 009203          352 VLWSERDAEDSWKPKALHRN--------LHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQ---IESKCM  419 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~~--------~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~  419 (540)
                      ++||.. +..   ...+...        ++.....+++++|+ +.++++...++.|++||..+++.+....   ......
T Consensus       169 ~~~~~~-g~~---~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~  244 (329)
T 3fvz_A          169 VQFSPS-GKF---VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF  244 (329)
T ss_dssp             EEECTT-SCE---EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred             EEEcCC-CCE---EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence            999954 442   1222111        12244889999998 7777777889999999999888766542   345677


Q ss_pred             EEeecCCCCCceEEEEE-------cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 009203          420 SVLPNPCDFNLFMVQTG-------TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIH  492 (540)
Q Consensus       420 ~~~~~~~~~~~~~l~~~-------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~  492 (540)
                      .+.++| +   ..+.+.       ..+..|++||..+++.... ++   ...++...+.+++++|+|.++++...++.|+
T Consensus       245 ~~~~~p-g---~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~-~~---~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          245 AISYIP-G---FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV-FK---PVRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             EEEEET-T---EEEEEECCCCTTCSCCCCEEEEETTTCCEEEE-EC---CSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             eeeecC-C---EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE-Ec---CCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            888888 3   334333       3345899999988764332 21   1235667799999999998888888999999


Q ss_pred             EEeccC
Q 009203          493 LFDIRY  498 (540)
Q Consensus       493 iwd~~~  498 (540)
                      +|++..
T Consensus       317 ~~~~~~  322 (329)
T 3fvz_A          317 KFTLTE  322 (329)
T ss_dssp             EEEEEE
T ss_pred             EEeCCc
Confidence            999874

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=1.6e-16  Score=155.54  Aligned_cols=237  Identities=12%  Similarity=0.038  Sum_probs=157.3

Q ss_pred             ceeEEEecCCCeEEEEeecCCC-CC--eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          277 PEDIAWHPQGNSLFSAHTADSG-DS--QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      +...+|+|||++|+.+    +. ++  .|.+||+.++   ........   +...+..+.|+| +++.|+.++.++.|++
T Consensus        38 ~~~~~~SpDg~~l~~~----~~~~g~~~l~~~d~~~g---~~~~lt~~---~~~~~~~~~~sp-dg~~l~~~~~~~~l~~  106 (388)
T 3pe7_A           38 FYQKCFTRDGSKLLFG----GAFDGPWNYYLLDLNTQ---VATQLTEG---RGDNTFGGFLSP-DDDALFYVKDGRNLMR  106 (388)
T ss_dssp             TTSCCBCTTSCEEEEE----ECTTSSCEEEEEETTTC---EEEECCCS---SCBCSSSCEECT-TSSEEEEEETTTEEEE
T ss_pred             hcCccCCCCCCEEEEE----EcCCCCceEEEEeCCCC---ceEEeeeC---CCCCccceEEcC-CCCEEEEEeCCCeEEE
Confidence            3448999999998887    44 55  4888898875   33444332   334455678999 9999999999999999


Q ss_pred             EecCCCCCccccceeecccCCcceeEEE--eccCCCEEEEEe----------------------CCCeEEEEECCCCCee
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVA--GMQQKQIVLSAG----------------------ADKRIIGFDAGVGRAD  409 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~--~s~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~  409 (540)
                      ||+.+++.    ..+. ..+...+....  +++++.+++...                      .+..|++||+.+++..
T Consensus       107 ~d~~~g~~----~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~  181 (388)
T 3pe7_A          107 VDLATLEE----NVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST  181 (388)
T ss_dssp             EETTTCCE----EEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred             EECCCCcc----eeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence            99999874    2221 22444444343  489999887432                      3467999999998876


Q ss_pred             eeeccCccEEEEeecC-CCCCceEEEEEcC------CCeEEEEECCCCcceeeeeccccccCccc--cCeEEEEEcCCCC
Q 009203          410 FKHQIESKCMSVLPNP-CDFNLFMVQTGTP------GRQLRLYDIRLRQTEIHAFGWKQESSESQ--SALINQSWSPDGL  480 (540)
Q Consensus       410 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~  480 (540)
                      ........+..+.|+| ++   ..|+....      ...|.++|........        +..+.  ..+..++|+|||+
T Consensus       182 ~l~~~~~~~~~~~~sp~dg---~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~--------l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          182 VILQENQWLGHPIYRPYDD---STVAFCHEGPHDLVDARMWLINEDGTNMRK--------VKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             EEEEESSCEEEEEEETTEE---EEEEEEECSCTTTSSCSEEEEETTSCCCEE--------SCCCCTTEEEEEEEECTTSS
T ss_pred             EeecCCccccccEECCCCC---CEEEEEEecCCCCCcceEEEEeCCCCceEE--------eeeCCCCcccccceECCCCC
Confidence            6656666778899999 76   56665554      3378888887554321        11222  3577889999999


Q ss_pred             EEEEEeC-CC----cEEEEeccCCCCcccccccccccc---eeEEEEcCCCCEEEEE---------EcCCcEEEEeC
Q 009203          481 YITSGSA-DP----VIHLFDIRYSANKPSQSIRAHQKR---VFKAVWHYSHPLLISI---------SSDLNIGLHKI  540 (540)
Q Consensus       481 ~l~sg~~-dg----~i~iwd~~~~~~~~~~~~~~h~~~---i~~l~~s~~~~~l~s~---------~~dg~v~iw~l  540 (540)
                      .|+..+. ++    .|++||+.++..+.+..+.++...   ...++|+|||+.|+..         ..+..|++||+
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence            8765443 22    399999997432334344332111   2234799999977754         45678999985

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.73  E-value=4.1e-14  Score=132.83  Aligned_cols=279  Identities=9%  Similarity=0.011  Sum_probs=193.6

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      ..+...+.+++++++ |.++++...++.|.+||.. +.. ..+..      ..+...+.++++.++|.++++.    ..+
T Consensus        11 ~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~-~~~~~------~~~~~~~~~i~~~~~g~l~v~~----~~~   77 (299)
T 2z2n_A           11 TNQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKI-TEYPL------PTPDAKVMCLTISSDGEVWFTE----NAA   77 (299)
T ss_dssp             CSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCE-EEEEC------SSTTCCEEEEEECTTSCEEEEE----TTT
T ss_pred             CCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCe-EEecC------CcccCceeeEEECCCCCEEEeC----CCC
Confidence            345578999999996 8877777668899999987 432 22211      1234568899999999988887    778


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      +.|..||.. +.    ...+.. +.....+.++++.+ ++.++++...++.|.+||. ++..    ...........+.+
T Consensus        78 ~~i~~~~~~-g~----~~~~~~-~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~----~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           78 NKIGRITKK-GI----IKEYTL-PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKI----REYELPNKGSYPSF  145 (299)
T ss_dssp             TEEEEECTT-SC----EEEEEC-SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCE----EEEECSSTTCCEEE
T ss_pred             CeEEEECCC-Cc----EEEEeC-CCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCE----EEecCCCCCCCCce
Confidence            899999986 31    222221 11234689999999 8888888777889999998 5442    22222224567899


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCCCeeee-e-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-H-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      +++.++|.++++...++.|..||. +++.... . ........+++++++   .++++...++.|.+||. ++....  +
T Consensus       146 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~-~g~~~~--~  218 (299)
T 2z2n_A          146 ITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD---ALWFVEIIGNKIGRITT-SGEITE--F  218 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS---SEEEEETTTTEEEEECT-TCCEEE--E
T ss_pred             EEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC---CEEEEccCCceEEEECC-CCcEEE--E
Confidence            999999988887777889999999 6665432 1 223456788888876   46666667889999999 554222  1


Q ss_pred             ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc-cccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203          458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ-SIRAHQKRVFKAVWHYSHPLLISISSDLNIG  536 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~  536 (540)
                          ....+...+.+++++++|+++++...++.|.+||..   +.... .+..+...+.++++ ++|.++++.+ .+.|.
T Consensus       219 ----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~  289 (299)
T 2z2n_A          219 ----KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN---NIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG  289 (299)
T ss_dssp             ----ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT---TEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred             ----ECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC---CceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence                122345678999999999977776678899999984   33211 12344567899999 8888777765 44454


Q ss_pred             EEe
Q 009203          537 LHK  539 (540)
Q Consensus       537 iw~  539 (540)
                      .++
T Consensus       290 ~~~  292 (299)
T 2z2n_A          290 KLT  292 (299)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=2.9e-15  Score=144.12  Aligned_cols=258  Identities=12%  Similarity=0.090  Sum_probs=166.1

Q ss_pred             CceEEEEEecCCCcEEEEE---------eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203          224 RKLRSLSLNPVNEQLFVTS---------ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT  294 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg---------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~  294 (540)
                      ..+..+++  | |+.++..         ..++.|.+|++.+++. ..+            ..+..++|+|||+.|+.+..
T Consensus        15 ~~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l------------~~~~~~~~SpDg~~la~~~~   78 (347)
T 2gop_A           15 AYLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI------------ENATMPRISPDGKKIAFMRA   78 (347)
T ss_dssp             CEEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE------------ESCEEEEECTTSSEEEEEEE
T ss_pred             EEcccceE--C-CcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc------------ccCCCeEECCCCCEEEEEEe
Confidence            34666777  5 5555543         2257799999987652 222            23678999999999988722


Q ss_pred             cC-CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-------------------------
Q 009203          295 AD-SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-------------------------  348 (540)
Q Consensus       295 ~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-------------------------  348 (540)
                      .+ .....|.+||+.++   ........    .. +..++|+| +++.|+.++.+                         
T Consensus        79 ~~~~~~~~l~~~~~~~g---~~~~l~~~----~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  149 (347)
T 2gop_A           79 NEEKKVSEIWVADLETL---SSKKILEA----KN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG  149 (347)
T ss_dssp             ETTTTEEEEEEEETTTT---EEEEEEEE----SE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------
T ss_pred             ccCCCcceEEEEECCCC---ceEEEEcC----CC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence            11 02234778888765   33333322    23 89999999 99888887642                         


Q ss_pred             --CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC---------eEEEEECCCCCeeeeeccCcc
Q 009203          349 --HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK---------RIIGFDAGVGRADFKHQIESK  417 (540)
Q Consensus       349 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~  417 (540)
                        ..|++||+.+++.   ...+..   . .+..++|+|+| +++++..++         .|.++|  +++....... ..
T Consensus       150 ~~~~l~~~d~~~~~~---~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~  218 (347)
T 2gop_A          150 EKTTFWIFDTESEEV---IEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VS  218 (347)
T ss_dssp             CEEEEEEEETTTTEE---EEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ES
T ss_pred             ccceEEEEECCCCeE---EeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-cc
Confidence              5699999988763   123322   2 68899999999 777775542         455556  4544322222 33


Q ss_pred             EEEEeecCCCCCceEEEEEcCC--------CeEEEEECCCCcceeeeeccccccCccccCeEE-EEEcCCCCEEEEEeCC
Q 009203          418 CMSVLPNPCDFNLFMVQTGTPG--------RQLRLYDIRLRQTEIHAFGWKQESSESQSALIN-QSWSPDGLYITSGSAD  488 (540)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~g~~l~sg~~d  488 (540)
                      ...+  +|++   ..|+.++.+        ..|.+||  +++. ..      ...++...+.. +.|+ +| ++++++.+
T Consensus       219 ~~~~--spdg---~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~------l~~~~~~~~~~~~~~s-dg-~~~~~~~~  282 (347)
T 2gop_A          219 FYAV--DSDG---ERILLYGKPEKKYMSEHNKLYIYD--GKEV-MG------ILDEVDRGVGQAKIKD-GK-VYFTLFEE  282 (347)
T ss_dssp             EEEE--EECS---SCEEEEECCSSSCCCSSCEEEEEC--SSCE-EE------SSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred             eeeE--CCCC---CEEEEEEccccCCccccceEEEEC--CCce-Ee------ccccCCcccCCccEEc-Cc-EEEEEecC
Confidence            3333  6766   455554432        4688888  3332 11      22345667876 8999 88 88999999


Q ss_pred             CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcE-EEEe
Q 009203          489 PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI-GLHK  539 (540)
Q Consensus       489 g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v-~iw~  539 (540)
                      +.++|| +.+  +... .+..+.+.|.+++|+|  .++++++.++.. .||.
T Consensus       283 ~~~~l~-~~~--g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~  328 (347)
T 2gop_A          283 GSVNLY-IWD--GEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFT  328 (347)
T ss_dssp             TEEEEE-EES--SSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred             CcEEEE-EcC--CceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence            999999 884  4443 3334577899999999  677777777765 6774

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=3.9e-16  Score=164.15  Aligned_cols=254  Identities=11%  Similarity=0.055  Sum_probs=154.2

Q ss_pred             cccccCceE---------EEEEe--cCCCcE-EEEEeC-CceEEEEEcC--CCCCcceeecccccCCCCCCCCceeEEEe
Q 009203          219 SSLHKRKLR---------SLSLN--PVNEQL-FVTSAL-DGVIRLWQLQ--SRGSGASLLSTTDCLSPKHRRWPEDIAWH  283 (540)
Q Consensus       219 ~~~h~~~V~---------~l~~s--pd~~~~-l~tg~~-dg~v~iw~~~--~~~~~~~~~~~~~~~~~~h~~~V~~~~~~  283 (540)
                      +..|...+.         ...|+  || |+. |+.++. +..|.+|++.  .......+....   ...|...+.+++|+
T Consensus        63 l~~~~~~~~~~~~~~~~~~~~~~~SPD-g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~s  138 (662)
T 3azo_A           63 ALPAPWNVRNRVFEYSGFPWAGVPRPA-GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS---AVGGGLRWADPVLL  138 (662)
T ss_dssp             SSCTTCCBCCCGGGTCCCCEEEECCSS-SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC---CSTTCEEEEEEEEE
T ss_pred             eCCCCccccccccccCCccceeeeecC-CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc---cCCCCccccCcEEC
Confidence            445555555         66666  97 565 665543 4556666654  202223331100   01156678899999


Q ss_pred             cCCCeEEEEeecCCCC----------CeEEEEecCCCCC---ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-
Q 009203          284 PQGNSLFSAHTADSGD----------SQISVLNLNKTKG---RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-  349 (540)
Q Consensus       284 ~~~~~l~s~~~~~~~d----------~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-  349 (540)
                      |||+.|+++    +.+          ..|++||+.++..   .........   +...+..++|+| ||++|+.++.++ 
T Consensus       139 pDg~~l~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~Sp-DG~~la~~~~~~~  210 (662)
T 3azo_A          139 PERGEVWCM----AEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDD---AHRFVTGPRLSP-DGRQAVWLAWDHP  210 (662)
T ss_dssp             TTTTEEEEE----EEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCS---CSSEECCCEECT-TSSEEEEEEECTT
T ss_pred             CCCCEEEEE----EecccCCCCCCceeEEEEEECCCCccccCCceeEEEec---CCCcccCceECC-CCCEEEEEECCCC
Confidence            999999988    544          5899999987200   022222202   235688899999 999998877553 


Q ss_pred             -------cEEEEecC-CCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC--eEEEEECCCCCeeeeeccCcc--
Q 009203          350 -------AVVLWSER-DAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK--RIIGFDAGVGRADFKHQIESK--  417 (540)
Q Consensus       350 -------~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~--  417 (540)
                             .|++||+. ++.. .....+. ..+...+..+.|+|||+++++++.++  .|.+||+.+++..........  
T Consensus       211 ~~~~~~~~i~~~d~~~~g~~-~~~~~l~-~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  288 (662)
T 3azo_A          211 RMPWEGTELKTARVTEDGRF-ADTRTLL-GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA  288 (662)
T ss_dssp             CCTTTCEEEEEEEECTTSCE-EEEEEEE-EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred             CCCCCCcEEEEEEECCCCcc-cccEEeC-CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence                   79999998 4521 0022222 23567899999999999888888888  677778766665433222111  


Q ss_pred             -------EEEEeecCCCCCceEEEEEcCCCeEEEE--ECCCCcceeeeeccccccCccccCeEEE-EEcCCCCEEEEEeC
Q 009203          418 -------CMSVLPNPCDFNLFMVQTGTPGRQLRLY--DIRLRQTEIHAFGWKQESSESQSALINQ-SWSPDGLYITSGSA  487 (540)
Q Consensus       418 -------~~~~~~~~~~~~~~~l~~~~~dg~v~i~--d~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~sg~~  487 (540)
                             +..+.++|++   .++++++. +.++||  |+.++.  ..      .+..+...+..+ +++.+.-++++++.
T Consensus       289 ~p~w~~~~~~~~~~~~~---~~~~~~~~-~~~~l~~~d~~~~~--~~------~l~~~~~~~~~~~s~~~~~~~~~~~~~  356 (662)
T 3azo_A          289 GPLWTPGMRWFAPLANG---LIAVVHGK-GAAVLGILDPESGE--LV------DAAGPWTEWAATLTVSGTRAVGVAASP  356 (662)
T ss_dssp             CCCCSTTCCSEEECTTS---CEEEEEBS-SSCEEEEEETTTTE--EE------ECCSSCCEEEEEEEEETTEEEEEEEET
T ss_pred             CccccccCceEeEeCCC---EEEEEEEc-CccEEEEEECCCCc--EE------EecCCCCeEEEEEecCCCEEEEEEcCC
Confidence                   3456677766   68888888 999999  554443  22      234455567766 55433333445555


Q ss_pred             CCc--EEEEeccC
Q 009203          488 DPV--IHLFDIRY  498 (540)
Q Consensus       488 dg~--i~iwd~~~  498 (540)
                      +..  |++||+.+
T Consensus       357 ~~~~~i~~~d~~~  369 (662)
T 3azo_A          357 RTAYEVVELDTVT  369 (662)
T ss_dssp             TEEEEEEEEETTT
T ss_pred             CCCCEEEEEECCC
Confidence            544  55555544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.71  E-value=2.2e-14  Score=145.56  Aligned_cols=315  Identities=9%  Similarity=0.035  Sum_probs=202.9

Q ss_pred             EEecCCCCeEEEeccc--hh---cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcC--CCCCcceeecccccCCCCC
Q 009203          201 VRTSASPATIHCHTSN--HV---SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQ--SRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~--~~---~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~h  273 (540)
                      +.....+++|.++|..  .+   +. ....+.++.|+|| |++|++++.|+.|.+||+.  +.+.+.++..       + 
T Consensus       170 ~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-------G-  239 (567)
T 1qks_A          170 SVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-------G-  239 (567)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEEC-------C-
T ss_pred             EEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEec-------C-
Confidence            4556678888888765  11   22 2235679999996 8889999999999999995  6555544432       1 


Q ss_pred             CCCceeEEEe----cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC-------Cc-ccceeEEEEeCCCCCE
Q 009203          274 RRWPEDIAWH----PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP-------HV-KGIINSIIFLPWENPC  341 (540)
Q Consensus       274 ~~~V~~~~~~----~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~-~~~v~~~~~~p~~~~~  341 (540)
                       .....++|+    |||++++++.   ..++.|.++|..+.   +.+..+....       .| ...+..+.+++....+
T Consensus       240 -~~P~~ia~s~~~~pDGk~l~v~n---~~~~~v~ViD~~t~---~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~  312 (567)
T 1qks_A          240 -SEARSIETSKMEGWEDKYAIAGA---YWPPQYVIMDGETL---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF  312 (567)
T ss_dssp             -SEEEEEEECCSTTCTTTEEEEEE---EETTEEEEEETTTC---CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred             -CCCceeEEccccCCCCCEEEEEE---ccCCeEEEEECCCC---cEEEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence             225689999    6999888872   46699999998876   3344333211       01 2257888888844555


Q ss_pred             EEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeeeecc-Cc---
Q 009203          342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFKHQI-ES---  416 (540)
Q Consensus       342 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~---  416 (540)
                      ++....+|.|.++|......   .. ...........++.|+|+|++++++. .++.|.++|+.+++.+..... ..   
T Consensus       313 vv~~~~~g~v~~vd~~~~~~---~~-v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Ph  388 (567)
T 1qks_A          313 IVNVKETGKILLVDYTDLNN---LK-TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH  388 (567)
T ss_dssp             EEEETTTTEEEEEETTCSSE---EE-EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC
T ss_pred             EEEecCCCeEEEEecCCCcc---ce-eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCC
Confidence            66666779999999987542   11 11112334567889999999987765 578999999999887654433 11   


Q ss_pred             --cEEEEeecCCCCCceEEEEEc-CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC------
Q 009203          417 --KCMSVLPNPCDFNLFMVQTGT-PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA------  487 (540)
Q Consensus       417 --~~~~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~------  487 (540)
                        ....+ ++|++.  .+++++. .++.|.++|..+.......+.....+......-..+..+|++++|.+...      
T Consensus       389 pg~g~~~-~~p~~g--~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~  465 (567)
T 1qks_A          389 PGRGANF-VHPTFG--PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE  465 (567)
T ss_dssp             CTTCEEE-EETTTE--EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred             Cccceee-ECCCCC--cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcc
Confidence              12222 466531  3455553 56899999998733211111111122222223345778999999988663      


Q ss_pred             -CCcEEEEeccCCC----Cccccccc--------ccccceeEEEEcCCCCEEEEEE-----cCCcEEEEe
Q 009203          488 -DPVIHLFDIRYSA----NKPSQSIR--------AHQKRVFKAVWHYSHPLLISIS-----SDLNIGLHK  539 (540)
Q Consensus       488 -dg~i~iwd~~~~~----~~~~~~~~--------~h~~~i~~l~~s~~~~~l~s~~-----~dg~v~iw~  539 (540)
                       .+.|.+||+.+.+    ...+..+.        .....+..+.|+++|+.+..+.     .++.|.|+|
T Consensus       466 ~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          466 ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence             3589999998730    01112221        1234789999999998765553     368898887

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.69  E-value=1.5e-15  Score=160.34  Aligned_cols=288  Identities=9%  Similarity=-0.020  Sum_probs=179.8

Q ss_pred             cCCCcEEEEEeCCc---eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee-cCCCCCeEEEEecC
Q 009203          233 PVNEQLFVTSALDG---VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT-ADSGDSQISVLNLN  308 (540)
Q Consensus       233 pd~~~~l~tg~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~-~~~~d~~i~vwd~~  308 (540)
                      || |.+++....++   .-.||....................+|...+.+++|||||++|+.+.. .|+.+..|++||+.
T Consensus        77 ~d-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           77 RR-NGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EE-TTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EE-CCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            65 55555444333   345555432111122222222222466667899999999999886533 23556899999999


Q ss_pred             CCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc-------------EEEEecCCCCCccccceeecccCCc
Q 009203          309 KTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA-------------VVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                      ++.... ...+.     ......++|+| +++.|+.++.|..             |++|++.++.... ........+..
T Consensus       156 tg~~~~-~~~~~-----~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~lv~~~~~~~~  227 (695)
T 2bkl_A          156 SGEWSK-VDVIE-----GGKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-TVVHERTGDPT  227 (695)
T ss_dssp             TCCBCS-SCCBS-----CCTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-EEEECCCCCTT
T ss_pred             CCCCcC-CcccC-----cccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc-eEEEecCCCCE
Confidence            873210 00111     11126899999 9999999988776             9999998876210 11222233556


Q ss_pred             ceeEEEeccCCCEEEEEeCCC----eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc---CCCeEEEEECC
Q 009203          376 AVMGVAGMQQKQIVLSAGADK----RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT---PGRQLRLYDIR  448 (540)
Q Consensus       376 ~v~~l~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~v~i~d~~  448 (540)
                      .+.++.|+|||++|+.++.++    .|++||..++................+ +++   .+++...   .++.|.+||+.
T Consensus       228 ~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g---~l~~~s~~~~~~~~l~~~d~~  303 (695)
T 2bkl_A          228 TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKD---RFYVLTDEGAPRQRVFEVDPA  303 (695)
T ss_dssp             CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETT---EEEEEECTTCTTCEEEEEBTT
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCC---cEEEEECCCCCCCEEEEEeCC
Confidence            788999999999998887766    688887765554333333333444444 444   3333333   35889999998


Q ss_pred             CCcce-eeeeccccccCcc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-ccceeEEEEcCCCCE
Q 009203          449 LRQTE-IHAFGWKQESSES-QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QKRVFKAVWHYSHPL  525 (540)
Q Consensus       449 ~~~~~-~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~~  525 (540)
                      ++... ...     ....+ ...+..++|+ ++.++++...|+..+||.++.. +.....+..+ .+.|..++++|+++.
T Consensus       304 ~~~~~~~~~-----l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~  376 (695)
T 2bkl_A          304 KPARASWKE-----IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDD  376 (695)
T ss_dssp             BCSGGGCEE-----EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSE
T ss_pred             CCCccCCeE-----EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCE
Confidence            76421 011     11122 4457888888 7778888999998888877632 4444555544 667888999999986


Q ss_pred             EEEEE----cCCcEEEEeC
Q 009203          526 LISIS----SDLNIGLHKI  540 (540)
Q Consensus       526 l~s~~----~dg~v~iw~l  540 (540)
                      |+...    ..++|++||+
T Consensus       377 l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          377 AYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             EEEEEEETTEEEEEEEEET
T ss_pred             EEEEEcCCCCCCEEEEEEC
Confidence            66332    3478998885

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.69  E-value=1.4e-14  Score=137.95  Aligned_cols=264  Identities=9%  Similarity=0.018  Sum_probs=174.7

Q ss_pred             CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC
Q 009203          244 LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP  323 (540)
Q Consensus       244 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  323 (540)
                      .+++|.+||..+++....+......  .........+++. ++...++.    ..++.|.+||..++   +.+..+..  
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~--~~lg~~~~~i~~~-~~~lyv~~----~~~~~v~viD~~t~---~~~~~i~~--   82 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANG--FKLGDVAQSMVIR-DGIGWIVV----NNSHVIFAIDINTF---KEVGRITG--   82 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHS--SCCBSCEEEEEEE-TTEEEEEE----GGGTEEEEEETTTC---CEEEEEEC--
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcC--cccCccceEEEEE-CCEEEEEE----cCCCEEEEEECccc---EEEEEcCC--
Confidence            4889999999987754443211110  1122345677774 34445555    67899999999987   33444432  


Q ss_pred             CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc---cCCcceeEEEeccCCCEEEEEe--CCCeE
Q 009203          324 HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN---LHSSAVMGVAGMQQKQIVLSAG--ADKRI  398 (540)
Q Consensus       324 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~--~dg~i  398 (540)
                        ...+..+++++ ++.++++...++.|.+||..+++...   .+...   +.......+++ . +..++++.  .++.|
T Consensus        83 --~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~---~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v  154 (328)
T 3dsm_A           83 --FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITG---YIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRI  154 (328)
T ss_dssp             --CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEE---EEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEE
T ss_pred             --CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEE---EEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEE
Confidence              24588999988 77555555478999999999876421   22211   11125667777 3 44444444  48899


Q ss_pred             EEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCC----------CeEEEEECCCCcceeeeeccccccCcccc
Q 009203          399 IGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPG----------RQLRLYDIRLRQTEIHAFGWKQESSESQS  468 (540)
Q Consensus       399 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~  468 (540)
                      .+||+.+++.+...........+.++|++   .+++++..+          +.|.+||..+.+.... +.    .. ...
T Consensus       155 ~viD~~t~~~~~~i~~g~~p~~i~~~~dG---~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~-~~----~~-~g~  225 (328)
T 3dsm_A          155 LKIDTETDKVVDELTIGIQPTSLVMDKYN---KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ-FK----FK-LGD  225 (328)
T ss_dssp             EEEETTTTEEEEEEECSSCBCCCEECTTS---EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE-EE----CC-TTC
T ss_pred             EEEECCCCeEEEEEEcCCCccceEEcCCC---CEEEEECCCccCCccccCCceEEEEECCCCeEEEE-Ee----cC-CCC
Confidence            99999999887766666666778888876   566665554          7899999987764322 11    11 123


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc--cccccccceeEEEEcC-CCCEEEEE----EcCCcEEEEeC
Q 009203          469 ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ--SIRAHQKRVFKAVWHY-SHPLLISI----SSDLNIGLHKI  540 (540)
Q Consensus       469 ~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~--~~~~h~~~i~~l~~s~-~~~~l~s~----~~dg~v~iw~l  540 (540)
                      .+..++|+|+++.|+++..  .|.+||..+  ++...  .+..+.....+++++| ++.++++.    ..++.|.+||.
T Consensus       226 ~p~~la~~~d~~~lyv~~~--~v~~~d~~t--~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          226 WPSEVQLNGTRDTLYWINN--DIWRMPVEA--DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             CCEEEEECTTSCEEEEESS--SEEEEETTC--SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             CceeEEEecCCCEEEEEcc--EEEEEECCC--CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            6789999999999888755  899999987  33321  2222245689999999 55666666    57889999974

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=1.4e-14  Score=136.00  Aligned_cols=230  Identities=11%  Similarity=0.019  Sum_probs=164.9

Q ss_pred             CCCceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203          274 RRWPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV  352 (540)
Q Consensus       274 ~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  352 (540)
                      .....+++|+|+|+ +++++    ..++.|..||..++     ...+..   +...+.+++++| ++.++++...++.|.
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~----~~~~~i~~~~~~~~-----~~~~~~---~~~~~~~l~~~~-dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSD----VRQNRTWAWSDDGQ-----LSPEMH---PSHHQNGHCLNK-QGHLIACSHGLRRLE   93 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEE----GGGTEEEEEETTSC-----EEEEES---SCSSEEEEEECT-TCCEEEEETTTTEEE
T ss_pred             CccccCCeEeCCCCEEEEEe----CCCCEEEEEECCCC-----eEEEEC---CCCCcceeeECC-CCcEEEEecCCCeEE
Confidence            34467899999998 67777    78999999999864     333332   245689999999 898888777778999


Q ss_pred             EEecCCCCCccccceeec---ccCCcceeEEEeccCCCEEEEE----e-------------CCCeEEEEECCCCCeeeee
Q 009203          353 LWSERDAEDSWKPKALHR---NLHSSAVMGVAGMQQKQIVLSA----G-------------ADKRIIGFDAGVGRADFKH  412 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~---~~~~~~v~~l~~s~~~~~l~~~----~-------------~dg~i~iwd~~~~~~~~~~  412 (540)
                      +||..+++.    ..+..   ......+.+++++|+|+++++.    +             ..+.|..+|.. ++.....
T Consensus        94 ~~d~~~g~~----~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (296)
T 3e5z_A           94 RQREPGGEW----ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI  168 (296)
T ss_dssp             EECSTTCCE----EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE
T ss_pred             EEcCCCCcE----EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee
Confidence            999987763    22211   1122356789999999988873    2             13467777766 5544334


Q ss_pred             ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC-CCcc-e-eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC
Q 009203          413 QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR-LRQT-E-IHAFGWKQESSESQSALINQSWSPDGLYITSGSADP  489 (540)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~-~~~~-~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg  489 (540)
                      ........++++|++   ..+++.+.++.|.+||+. ++.. . ...+      ..+...+.+++++++|+++++.  ++
T Consensus       169 ~~~~~~~gi~~s~dg---~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~------~~~~~~p~~i~~d~~G~l~v~~--~~  237 (296)
T 3e5z_A          169 RDRVKPNGLAFLPSG---NLLVSDTGDNATHRYCLNARGETEYQGVHF------TVEPGKTDGLRVDAGGLIWASA--GD  237 (296)
T ss_dssp             CCCSSEEEEEECTTS---CEEEEETTTTEEEEEEECSSSCEEEEEEEE------CCSSSCCCSEEEBTTSCEEEEE--TT
T ss_pred             cCCCCCccEEECCCC---CEEEEeCCCCeEEEEEECCCCcCcCCCeEe------eCCCCCCCeEEECCCCCEEEEc--CC
Confidence            444566789999987   566888888999999997 3332 1 1111      1234567789999999877666  78


Q ss_pred             cEEEEeccCCCCcccccccccccceeEEEE-cCCCCEEEEEEcCCcEE
Q 009203          490 VIHLFDIRYSANKPSQSIRAHQKRVFKAVW-HYSHPLLISISSDLNIG  536 (540)
Q Consensus       490 ~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~-s~~~~~l~s~~~dg~v~  536 (540)
                      .|.+||..   ++.+..+..+.. +++++| .|+++.|++++.++.++
T Consensus       238 ~v~~~~~~---g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          238 GVHVLTPD---GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             EEEEECTT---SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred             eEEEECCC---CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence            89999987   566777777777 999999 58999888888775443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.69  E-value=4.8e-15  Score=156.86  Aligned_cols=250  Identities=8%  Similarity=-0.079  Sum_probs=162.6

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecC-CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTAD-SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH  349 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  349 (540)
                      .+|...+..++|||||++|+.+...+ +....|++||+.++.   .......    ...+.+++|+| |++.|+.++.++
T Consensus       121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~---~~~~~~~----~~~~~~~~wsp-Dg~~l~~~~~~~  192 (710)
T 2xdw_A          121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK---ELPDVLE----RVKFSCMAWTH-DGKGMFYNAYPQ  192 (710)
T ss_dssp             TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE---EEEEEEE----EECSCCEEECT-TSSEEEEEECCC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC---CCccccc----CcccceEEEEe-CCCEEEEEEECC
Confidence            35555688999999999998874321 222389999999872   2322111    12367899999 999999988876


Q ss_pred             c----------------EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-----CCeEEEEECCC---
Q 009203          350 A----------------VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-----DKRIIGFDAGV---  405 (540)
Q Consensus       350 ~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-----dg~i~iwd~~~---  405 (540)
                      .                |++|++.++.... ........+...+.++.|+|||++|+.++.     +..|++||+.+   
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          193 QDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             ccccccccccccCCCCEEEEEECCCCcccc-eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence            6                9999998875210 111122234566889999999999988765     56899999986   


Q ss_pred             ---CC--eeeeeccCccEEEEeecCCCCCceEEEEEcC---CCeEEEEECCCCcce-eeeeccccccCccc--cCeEEEE
Q 009203          406 ---GR--ADFKHQIESKCMSVLPNPCDFNLFMVQTGTP---GRQLRLYDIRLRQTE-IHAFGWKQESSESQ--SALINQS  474 (540)
Q Consensus       406 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~--~~v~~~~  474 (540)
                         +.  ............. .++|++.  .+++.+..   .+.|.+||+.++... ..      .+..|.  ..+..++
T Consensus       272 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~------~l~~~~~~~~~~~~~  342 (710)
T 2xdw_A          272 GITGILKWVKLIDNFEGEYD-YVTNEGT--VFTFKTNRHSPNYRLINIDFTDPEESKWK------VLVPEHEKDVLEWVA  342 (710)
T ss_dssp             SSCSSCCCEEEECSSSSCEE-EEEEETT--EEEEEECTTCTTCEEEEEETTSCCGGGCE------EEECCCSSCEEEEEE
T ss_pred             ccCCccceEEeeCCCCcEEE-EEeccCC--EEEEEECCCCCCCEEEEEeCCCCCcccce------eccCCCCCCeEEEEE
Confidence               42  2222222222222 3556552  23333332   347999999876421 11      111222  2578899


Q ss_pred             EcCCCCEEEEEeCCCc--EEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEE-E---cCCcEEEEeC
Q 009203          475 WSPDGLYITSGSADPV--IHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI-S---SDLNIGLHKI  540 (540)
Q Consensus       475 ~sp~g~~l~sg~~dg~--i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~-~---~dg~v~iw~l  540 (540)
                      |++++.++++...|+.  |++|++.+  +..+..+..+.+.|..+.++|++..|+.. +   ..++|++||+
T Consensus       343 ~~~~~~lv~~~~~~g~~~l~~~~~~~--g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          343 CVRSNFLVLCYLHDVKNTLQLHDLAT--GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEETTT--CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             EEcCCEEEEEEEECCEEEEEEEECCC--CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            9988888888888885  45566644  55566677777789999999999765533 2   3468888874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.69  E-value=9.9e-16  Score=150.21  Aligned_cols=240  Identities=14%  Similarity=0.084  Sum_probs=155.3

Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV  352 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  352 (540)
                      |...+..++|+|||++|+.+... ..+..|.+||+.++   ........   .......+.|+| +++.|+.++.++.|+
T Consensus        34 ~~~~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~---~~~~l~~~---~~~~~~~~~~sp-dg~~l~~~~~~~~l~  105 (396)
T 3c5m_A           34 HRNYFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQ---QAVQLTEG---KGDNTFGGFIST-DERAFFYVKNELNLM  105 (396)
T ss_dssp             ECCCTTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTT---EEEECCCS---SCBCTTTCEECT-TSSEEEEEETTTEEE
T ss_pred             cceeeecCcCCCCCCEEEEEEec-CCCceEEEEECCCC---cEEEeecC---CCCccccceECC-CCCEEEEEEcCCcEE
Confidence            34457889999999998776211 12347888898875   32333221   122233478999 999999999999999


Q ss_pred             EEecCCCCCccccceeecccCCcceeE-------------------EEeccCCCEEEEE-----eCCCeEEEEECCCCCe
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMG-------------------VAGMQQKQIVLSA-----GADKRIIGFDAGVGRA  408 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~-------------------l~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~  408 (540)
                      +||+.+++.    ..+.. .+......                   +.|+|+++.++..     ..+..|++||+.+++.
T Consensus       106 ~~d~~~~~~----~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (396)
T 3c5m_A          106 KVDLETLEE----QVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL  180 (396)
T ss_dssp             EEETTTCCE----EEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred             EEECCCCCc----EEEEe-cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence            999988763    22221 12222222                   3567788776654     3566899999998887


Q ss_pred             eeeeccCccEEEEeecC-CCCCceEEEEEcCC------CeEEEEECCCCcceeeeeccccccCcc-ccCeEEEEEcCCCC
Q 009203          409 DFKHQIESKCMSVLPNP-CDFNLFMVQTGTPG------RQLRLYDIRLRQTEIHAFGWKQESSES-QSALINQSWSPDGL  480 (540)
Q Consensus       409 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~  480 (540)
                      .........+..+.|+| ++   ..|+..+.+      ..|.+||+........       .... ...+..++|+|||+
T Consensus       181 ~~~~~~~~~~~~~~~sp~dg---~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~~~~~~~spdg~  250 (396)
T 3c5m_A          181 EVIHQDTAWLGHPIYRPFDD---STVGFCHEGPHDLVDARMWLVNEDGSNVRKI-------KEHAEGESCTHEFWIPDGS  250 (396)
T ss_dssp             EEEEEESSCEEEEEEETTEE---EEEEEEECSCSSSCSCCCEEEETTSCCCEES-------SCCCTTEEEEEEEECTTSS
T ss_pred             EeeccCCcccccceECCCCC---CEEEEEecCCCCCCCceEEEEECCCCceeEe-------eccCCCccccceEECCCCC
Confidence            65555566778889999 55   344444333      4688899875542111       1111 23578899999999


Q ss_pred             EEEEEeCC-----CcEEEEeccCCCCcccccccccccceeEEEEcC-CCCEEEEEE----------------cCCcEEEE
Q 009203          481 YITSGSAD-----PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY-SHPLLISIS----------------SDLNIGLH  538 (540)
Q Consensus       481 ~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~-~~~~l~s~~----------------~dg~v~iw  538 (540)
                      +|+.++.+     +.|++||+.++....+..+.+    .. +.|+| ||++|++++                .++.|++|
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~  325 (396)
T 3c5m_A          251 AMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVL  325 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEE
T ss_pred             EEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEE
Confidence            88776543     349999998632222222222    23 89999 999888765                34789998


Q ss_pred             eC
Q 009203          539 KI  540 (540)
Q Consensus       539 ~l  540 (540)
                      |+
T Consensus       326 d~  327 (396)
T 3c5m_A          326 NT  327 (396)
T ss_dssp             ET
T ss_pred             ec
Confidence            74

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=1.5e-14  Score=135.83  Aligned_cols=238  Identities=9%  Similarity=0.061  Sum_probs=160.9

Q ss_pred             ccccCceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      ..+.....+++|+|+ ++ +++++..++.|..|+..++  ...+.        .+...+.+++|+++|+++++.    ..
T Consensus        24 ~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~~~~--~~~~~--------~~~~~~~~l~~~~dg~l~v~~----~~   88 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSDDGQ--LSPEM--------HPSHHQNGHCLNKQGHLIACS----HG   88 (296)
T ss_dssp             ECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEETTSC--EEEEE--------SSCSSEEEEEECTTCCEEEEE----TT
T ss_pred             ecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEECCCC--eEEEE--------CCCCCcceeeECCCCcEEEEe----cC
Confidence            345567899999997 65 8889999999999999875  33332        344568899999999988887    77


Q ss_pred             CCeEEEEecCCCCCceeEEeecCC-CCcccceeEEEEeCCCCCEEEEE----e-------------cCCcEEEEecCCCC
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDK-PHVKGIINSIIFLPWENPCFATG----G-------------SDHAVVLWSERDAE  360 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~----~-------------~dg~i~iwd~~~~~  360 (540)
                      ++.|.+||..++..   ....... ......+..++++| ++.++++.    +             ..+.|..++.. +.
T Consensus        89 ~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~  163 (296)
T 3e5z_A           89 LRRLERQREPGGEW---ESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT  163 (296)
T ss_dssp             TTEEEEECSTTCCE---EEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC
T ss_pred             CCeEEEEcCCCCcE---EEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC
Confidence            89999999976632   2221110 01123467899999 99988873    2             12456666655 33


Q ss_pred             CccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC-CCCe---eeee-ccCccEEEEeecCCCCCceEEEE
Q 009203          361 DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG-VGRA---DFKH-QIESKCMSVLPNPCDFNLFMVQT  435 (540)
Q Consensus       361 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~-~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~l~~  435 (540)
                          ...+  ..+......++|+|+|+.+++.+.++.|.+||+. .+..   .... .....+..+++++++   .++++
T Consensus       164 ----~~~~--~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G---~l~v~  234 (296)
T 3e5z_A          164 ----LSAP--IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG---LIWAS  234 (296)
T ss_dssp             ----EEEE--ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS---CEEEE
T ss_pred             ----EEEe--ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC---CEEEE
Confidence                2222  2355667899999999998777788999999987 4443   1111 123344567888877   44444


Q ss_pred             EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEE-cCCCCEEEEEeCCCcEEEEeccC
Q 009203          436 GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSW-SPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       436 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .  ++.|.+||.. ++. ...      +..+.. +++++| +|+++.|++++.++ +.-++..+
T Consensus       235 ~--~~~v~~~~~~-g~~-~~~------~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          235 A--GDGVHVLTPD-GDE-LGR------VLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             E--TTEEEEECTT-SCE-EEE------EECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             c--CCeEEEECCC-CCE-EEE------EECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence            4  7899999987 332 221      122344 889999 68999998888764 44555553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=4e-14  Score=135.29  Aligned_cols=254  Identities=15%  Similarity=0.092  Sum_probs=165.6

Q ss_pred             CCCeEEEeccc--hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe
Q 009203          206 SPATIHCHTSN--HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH  283 (540)
Q Consensus       206 ~d~~i~~~~~~--~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~  283 (540)
                      .+..++.|...  ..+.++...+.+++|+|+ +++++++..++.|.+||..+++.....        ..+...+.+++|+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~~~~--------~~~~~~~~~i~~~   95 (333)
T 2dg1_A           25 SESELQTITAEPWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPF--------VSHKANPAAIKIH   95 (333)
T ss_dssp             CGGGSCEEECEEEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEE--------ECSSSSEEEEEEC
T ss_pred             ecccCcccccceeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEEEEe--------eCCCCCcceEEEC
Confidence            34555555433  234567778899999996 888888888999999999876533222        1234568999999


Q ss_pred             cCCCeEEEEeecCCCC----CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec------CCcEEE
Q 009203          284 PQGNSLFSAHTADSGD----SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS------DHAVVL  353 (540)
Q Consensus       284 ~~~~~l~s~~~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------dg~i~i  353 (540)
                      ++|+++++.    ..+    +.|.+||..++..   ...+... .....+.+++++| ++.++++...      .+.|..
T Consensus        96 ~dg~l~v~~----~~~~~~~~~i~~~d~~~~~~---~~~~~~~-~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~  166 (333)
T 2dg1_A           96 KDGRLFVCY----LGDFKSTGGIFAATENGDNL---QDIIEDL-STAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYY  166 (333)
T ss_dssp             TTSCEEEEE----CTTSSSCCEEEEECTTSCSC---EEEECSS-SSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEE
T ss_pred             CCCcEEEEe----CCCCCCCceEEEEeCCCCEE---EEEEccC-ccCCcccceEECC-CCCEEEEeccccccCCCceEEE
Confidence            999988876    555    6899999987532   2222211 1235689999999 8887776653      255666


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCCEEEE-EeCCCeEEEEECCC-CCeeee--------eccCccEEEEee
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLS-AGADKRIIGFDAGV-GRADFK--------HQIESKCMSVLP  423 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~dg~i~iwd~~~-~~~~~~--------~~~~~~~~~~~~  423 (540)
                      ||..+++.    ..+.  .....+.+++|+|+|+.|+. .+.++.|.+||+.. +..+..        .........+++
T Consensus       167 ~~~~~~~~----~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~  240 (333)
T 2dg1_A          167 VSPDFRTV----TPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI  240 (333)
T ss_dssp             ECTTSCCE----EEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred             EeCCCCEE----EEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEE
Confidence            66655442    2221  12345789999999986654 45678999999964 332211        111135667888


Q ss_pred             cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC
Q 009203          424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD  488 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d  488 (540)
                      ++++   .++++...++.|.+||.. ++. ...+.......+|...+.+++|+||++.|+.++.+
T Consensus       241 d~~G---~l~v~~~~~~~v~~~d~~-g~~-~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          241 DSDD---NLYVAMYGQGRVLVFNKR-GYP-IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             BTTC---CEEEEEETTTEEEEECTT-SCE-EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCCC---CEEEEEcCCCEEEEECCC-CCE-EEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            8877   566776778899999985 332 22221111111233368899999998777666554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.68  E-value=2.1e-14  Score=151.86  Aligned_cols=257  Identities=12%  Similarity=0.019  Sum_probs=169.1

Q ss_pred             EEeccchhcccccCceEEEEEecCCCcEEEEEeCCc-----eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC
Q 009203          211 HCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDG-----VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ  285 (540)
Q Consensus       211 ~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  285 (540)
                      .+.+...+-.+|...+..++|||| |++||.++.++     .|++||+.+++.......        + ..+..++|+||
T Consensus       112 ~lld~~~l~~~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--------~-~~~~~~~wspD  181 (710)
T 2xdw_A          112 VFLDPNILSDDGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--------R-VKFSCMAWTHD  181 (710)
T ss_dssp             EEECGGGGCTTSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--------E-ECSCCEEECTT
T ss_pred             EEECHHHhccCCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--------C-cccceEEEEeC
Confidence            344555555667778999999997 88887765433     899999998875432211        1 12568999999


Q ss_pred             CCeEEEEeecCCCCCe----------------EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec--
Q 009203          286 GNSLFSAHTADSGDSQ----------------ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS--  347 (540)
Q Consensus       286 ~~~l~s~~~~~~~d~~----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--  347 (540)
                      |+.|+.+    +.++.                |++|++.++.... ...+.. ..+...+..+.|+| ++++|+.++.  
T Consensus       182 g~~l~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~~v~~~-~~~~~~~~~~~~Sp-Dg~~l~~~~~~~  254 (710)
T 2xdw_A          182 GKGMFYN----AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEF-PDEPKWMGGAELSD-DGRYVLLSIREG  254 (710)
T ss_dssp             SSEEEEE----ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECC-TTCTTCEEEEEECT-TSCEEEEEEECS
T ss_pred             CCEEEEE----EECCccccccccccccCCCCEEEEEECCCCcccc-eEEecc-CCCCeEEEEEEEcC-CCCEEEEEEEcc
Confidence            9999887    44443                9999998763211 222222 12345578999999 9998887765  


Q ss_pred             ---CCcEEEEecCC------CCCccccceeecccCCcceeEEEeccCCCEEEEEeCC----CeEEEEECCCCCe---eee
Q 009203          348 ---DHAVVLWSERD------AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD----KRIIGFDAGVGRA---DFK  411 (540)
Q Consensus       348 ---dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~~~---~~~  411 (540)
                         +..|++||+.+      +..  ....+.  .+...+.. .|+++|..|+..+..    +.|.+||+.++..   ...
T Consensus       255 ~~~~~~l~~~d~~~~~~~~~~~~--~~~~l~--~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l  329 (710)
T 2xdw_A          255 CDPVNRLWYCDLQQESNGITGIL--KWVKLI--DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL  329 (710)
T ss_dssp             SSSCCEEEEEEGGGSSSSSCSSC--CCEEEE--CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE
T ss_pred             CCCccEEEEEECcccccccCCcc--ceEEee--CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec
Confidence               56899999986      421  123332  24444444 488899888776653    3699999987642   111


Q ss_pred             ecc-C-ccEEEEeecCCCCCceEEEEEcCCCe--EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-
Q 009203          412 HQI-E-SKCMSVLPNPCDFNLFMVQTGTPGRQ--LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-  486 (540)
Q Consensus       412 ~~~-~-~~~~~~~~~~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-  486 (540)
                      ... . ..+..+.+.+.+   .++++...++.  |.+||+.+++.. .      .+..+.+.+..++++|++..|+... 
T Consensus       330 ~~~~~~~~~~~~~~~~~~---~lv~~~~~~g~~~l~~~~~~~g~~~-~------~l~~~~~~v~~~~~s~d~~~l~~~~s  399 (710)
T 2xdw_A          330 VPEHEKDVLEWVACVRSN---FLVLCYLHDVKNTLQLHDLATGALL-K------IFPLEVGSVVGYSGQKKDTEIFYQFT  399 (710)
T ss_dssp             ECCCSSCEEEEEEEETTT---EEEEEEEETTEEEEEEEETTTCCEE-E------EECCCSSEEEEEECCTTCSEEEEEEE
T ss_pred             cCCCCCCeEEEEEEEcCC---EEEEEEEECCEEEEEEEECCCCCEE-E------ecCCCCceEEEEecCCCCCEEEEEEe
Confidence            222 2 345667777554   67888888875  566777555422 2      1233456788999999997766332 


Q ss_pred             ---CCCcEEEEeccCC
Q 009203          487 ---ADPVIHLFDIRYS  499 (540)
Q Consensus       487 ---~dg~i~iwd~~~~  499 (540)
                         ..+.|++||+.++
T Consensus       400 s~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          400 SFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             CSSCCCEEEEEETTSS
T ss_pred             CCCCCCEEEEEECCCC
Confidence               3578999999874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=4.9e-14  Score=130.26  Aligned_cols=236  Identities=10%  Similarity=-0.002  Sum_probs=165.0

Q ss_pred             CceeEEEecCCCeEE-EEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          276 WPEDIAWHPQGNSLF-SAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~-s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      ...+++++++|++++ +.    ..++.|.+||..+..    ...+..  .....+.++++++ ++.++++.. ++.|.+|
T Consensus        25 ~p~~i~~~~~g~l~v~~~----~~~~~i~~~~~~~~~----~~~~~~--~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~   92 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSE----GMYGRVVKLATGSTG----TTVLPF--NGLYQPQGLAVDG-AGTVYVTDF-NNRVVTL   92 (270)
T ss_dssp             CEEEEEECTTCCEEEEEC----SSSCEEEEECC---------EECCC--CSCCSCCCEEECT-TCCEEEEET-TTEEEEE
T ss_pred             CccceEECCCCCEEEEcc----CCCCcEEEecCCCcc----cceEee--CCcCCcceeEECC-CCCEEEEcC-CCEEEEE
Confidence            567899999998776 54    678899999976541    122211  1224578999999 888666665 8899999


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEE
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l  433 (540)
                      |..+...    ..+. ......+.+++++++|+++++...++.|.+|+..+....... ........+++++++   .++
T Consensus        93 d~~~~~~----~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g---~l~  164 (270)
T 1rwi_B           93 AAGSNNQ----TVLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG---NVY  164 (270)
T ss_dssp             CTTCSCC----EECC-CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC---CEE
T ss_pred             eCCCceE----eeee-cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC---CEE
Confidence            9877542    1111 123356899999999998887777889999987655443222 222355678888876   567


Q ss_pred             EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccc
Q 009203          434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKR  513 (540)
Q Consensus       434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~  513 (540)
                      ++...++.|.+||..........       ..+...+.+++++++|.++++...++.|.+|+...  .........+...
T Consensus       165 v~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~--~~~~~~~~~~~~~  235 (270)
T 1rwi_B          165 VTDTDNNRVVKLEAESNNQVVLP-------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--TTSTVLPFTGLNT  235 (270)
T ss_dssp             EEEGGGTEEEEECTTTCCEEECC-------CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC--SCCEECCCCSCSC
T ss_pred             EEECCCCEEEEEecCCCceEeec-------ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC--CcceeeccCCCCC
Confidence            77777889999998865532211       12225688999999998888877889999999875  2222222233356


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          514 VFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       514 i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +.+++++++|+++++...++.|+++++
T Consensus       236 p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          236 PLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             ceeEEECCCCCEEEEECCCCEEEEEcC
Confidence            899999999999999999999999974

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=1.1e-13  Score=127.96  Aligned_cols=238  Identities=9%  Similarity=0.066  Sum_probs=167.4

Q ss_pred             ceEEEEEecCCCcEEE-EEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          225 KLRSLSLNPVNEQLFV-TSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~-tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ...+++++|+ +.+++ +...++.|.+|+..+...  ....      ..+...+.+++++++|+++++.    . ++.|.
T Consensus        25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~~~--~~~~------~~~~~~p~~i~~~~~g~l~v~~----~-~~~i~   90 (270)
T 1rwi_B           25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGT--TVLP------FNGLYQPQGLAVDGAGTVYVTD----F-NNRVV   90 (270)
T ss_dssp             CEEEEEECTT-CCEEEEECSSSCEEEEECC-------EECC------CCSCCSCCCEEECTTCCEEEEE----T-TTEEE
T ss_pred             CccceEECCC-CCEEEEccCCCCcEEEecCCCccc--ceEe------eCCcCCcceeEECCCCCEEEEc----C-CCEEE
Confidence            6789999996 77777 547788999999765432  1110      1233457889999999976665    5 88999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      +||.....    ...+..  .....+.++++++ ++.++++...++.|.+|+..+...     ..........+.+++++
T Consensus        91 ~~d~~~~~----~~~~~~--~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~p~~i~~~  158 (270)
T 1rwi_B           91 TLAAGSNN----QTVLPF--DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-----TVLPFTGLNDPDGVAVD  158 (270)
T ss_dssp             EECTTCSC----CEECCC--CSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSC-----EECCCCSCCSCCCEEEC
T ss_pred             EEeCCCce----Eeeeec--CCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCcee-----EeeccccCCCceeEEEe
Confidence            99987542    122221  1124588999999 888888877788999997665432     11112233467899999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc
Q 009203          384 QQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE  462 (540)
Q Consensus       384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  462 (540)
                      ++|+++++...++.|.+||............ ......+++++++   .++++...++.|.+||.........       
T Consensus       159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g---~l~v~~~~~~~v~~~~~~~~~~~~~-------  228 (270)
T 1rwi_B          159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG---TVYVTEHNTNQVVKLLAGSTTSTVL-------  228 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC---CEEEEETTTSCEEEECTTCSCCEEC-------
T ss_pred             CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC---CEEEEECCCCcEEEEcCCCCcceee-------
Confidence            9999777777788999999987655433222 2567788999876   5777777788999999876443221       


Q ss_pred             cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          463 SSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ...+...+.+++++++|+++++...++.|++|++..
T Consensus       229 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          229 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            112335689999999999888888999999999885

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.66  E-value=9.5e-15  Score=154.11  Aligned_cols=253  Identities=9%  Similarity=-0.037  Sum_probs=163.6

Q ss_pred             EeccchhcccccCceEEEEEecCCCcEEE-----EEeCCceEEEEEcCCCCCc-ceeecccccCCCCCCCCceeEEEecC
Q 009203          212 CHTSNHVSSLHKRKLRSLSLNPVNEQLFV-----TSALDGVIRLWQLQSRGSG-ASLLSTTDCLSPKHRRWPEDIAWHPQ  285 (540)
Q Consensus       212 ~~~~~~~~~~h~~~V~~l~~spd~~~~l~-----tg~~dg~v~iw~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~~~  285 (540)
                      +.+....-.+|...+.+++|||| |++||     .|+.+..|++||+.+++.. ...   .    ..  .....++|+||
T Consensus       109 l~d~~~~a~~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~---~----~~--~~~~~~~wspD  178 (695)
T 2bkl_A          109 LLDPNGWSKDGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV---I----EG--GKYATPKWTPD  178 (695)
T ss_dssp             EECGGGSSSSSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC---B----SC--CTTCCCEECTT
T ss_pred             EEchHHhccCCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEECCCCCCcCCcc---c----Cc--ccccceEEecC
Confidence            34444445678778999999997 78777     3444568999999988743 111   0    11  11267999999


Q ss_pred             CCeEEEEeecCCCCCe-------------EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC---
Q 009203          286 GNSLFSAHTADSGDSQ-------------ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH---  349 (540)
Q Consensus       286 ~~~l~s~~~~~~~d~~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---  349 (540)
                      |+.|+.+    +.+..             |++|++.++.... ...+.. ..+...+.++.|+| +|++|+.++.++   
T Consensus       179 g~~l~~~----~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~lv~~~-~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~  251 (695)
T 2bkl_A          179 SKGFYYE----WLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-TVVHER-TGDPTTFLQSDLSR-DGKYLFVYILRGWSE  251 (695)
T ss_dssp             SSEEEEE----ECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-EEEECC-CCCTTCEEEEEECT-TSCCEEEEEEETTTE
T ss_pred             CCEEEEE----EecCCCCCccccCCCCCEEEEEECCCCchhc-eEEEec-CCCCEEEEEEEECC-CCCEEEEEEeCCCCc
Confidence            9999988    55554             9999998774221 222222 12345688999999 999888877666   


Q ss_pred             -cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC----CCeEEEEECCCCCe---eeeec--cCccEE
Q 009203          350 -AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA----DKRIIGFDAGVGRA---DFKHQ--IESKCM  419 (540)
Q Consensus       350 -~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~~---~~~~~--~~~~~~  419 (540)
                       .|++|+..++.    ...+..  +...+....| ++|. ++..+.    ++.|.+||+.++..   .....  ....+.
T Consensus       252 ~~l~~~~~~~~~----~~~l~~--~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~  323 (695)
T 2bkl_A          252 NDVYWKRPGEKD----FRLLVK--GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLL  323 (695)
T ss_dssp             EEEEEECTTCSS----CEEEEE--CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEE
T ss_pred             eEEEEEcCCCCc----eEEeec--CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEE
Confidence             67777665554    233332  4455566666 5666 544443    57899999987653   22222  234456


Q ss_pred             EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCcc-ccCeEEEEEcCCCCEEEEE----eCCCcEEEE
Q 009203          420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES-QSALINQSWSPDGLYITSG----SADPVIHLF  494 (540)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg----~~dg~i~iw  494 (540)
                      .+.++ .+   .++++...|+..+||.+.........      +..+ .+.+..++++|+++.|+..    ...+.|++|
T Consensus       324 ~~~~~-~~---~lv~~~~~dg~~~l~~~~~~g~~~~~------l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~  393 (695)
T 2bkl_A          324 SVSIV-GG---HLSLEYLKDATSEVRVATLKGKPVRT------VQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKT  393 (695)
T ss_dssp             EEEEE-TT---EEEEEEEETTEEEEEEEETTCCEEEE------CCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEE-CC---EEEEEEEECCEEEEEEEeCCCCeeEE------ecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEE
Confidence            67776 33   68888889998888766521111211      1222 4567788899999877733    235789999


Q ss_pred             eccCC
Q 009203          495 DIRYS  499 (540)
Q Consensus       495 d~~~~  499 (540)
                      |+.++
T Consensus       394 d~~~g  398 (695)
T 2bkl_A          394 SVSTG  398 (695)
T ss_dssp             ETTTC
T ss_pred             ECCCC
Confidence            99863

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.65  E-value=1.6e-12  Score=121.87  Aligned_cols=277  Identities=7%  Similarity=-0.043  Sum_probs=190.4

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      ....+.++++.++ +.++++...++.|.+||.. ++. ..+..      ..+...+.++++.++|.+.++.    ..++.
T Consensus        18 ~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~-~~~~~------~~~~~~~~~i~~~~~g~l~v~~----~~~~~   84 (300)
T 2qc5_A           18 PDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRI-KEFEV------PTPDAKVMCLIVSSLGDIWFTE----NGANK   84 (300)
T ss_dssp             TTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCE-EEEEC------SSTTCCEEEEEECTTSCEEEEE----TTTTE
T ss_pred             CCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-Cce-EEEEC------CCCCCcceeEEECCCCCEEEEe----cCCCe
Confidence            3467899999996 8888877778999999987 432 22211      1234568899999999988876    67889


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      |..||.. +.  ........   ....+.++++.+ ++.++++...++.|..||.. ++.    ..+........+.+++
T Consensus        85 v~~~d~~-g~--~~~~~~~~---~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~----~~~~~~~~~~~~~~i~  152 (300)
T 2qc5_A           85 IGKLSKK-GG--FTEYPLPQ---PDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTI----YEYDLPNKGSYPAFIT  152 (300)
T ss_dssp             EEEECTT-SC--EEEEECSS---TTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCE----EEEECSSTTCCEEEEE
T ss_pred             EEEECCC-CC--eEEecCCC---CCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCE----EEccCCCCCCCceeEE
Confidence            9999987 42  11111111   224589999998 88888877768899999987 542    2222222446789999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      +.++|+++++...++.|..||. +++.....  ........+.+++++   .++++....+.|.+||. ++.....    
T Consensus       153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~i~~~~~-~g~~~~~----  223 (300)
T 2qc5_A          153 LGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDG---ALWFVEIMGNKIGRITT-TGEISEY----  223 (300)
T ss_dssp             ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS---SEEEEETTTTEEEEECT-TCCEEEE----
T ss_pred             ECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCC---CEEEEccCCCEEEEEcC-CCcEEEE----
Confidence            9999997777666889999998 55543321  123457788888876   46666666788999998 3332221    


Q ss_pred             ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccc-ccccccccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPS-QSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                        ....+...+.+++++++|++.++...++.|..|+..   +... ..+......+.+++++++|.++++.. + .|..+
T Consensus       224 --~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          224 --DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND---NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL  296 (300)
T ss_dssp             --ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT---SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred             --ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC---CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence              112334568999999999977777677899999984   3222 12233345689999999998776654 4 56555


Q ss_pred             e
Q 009203          539 K  539 (540)
Q Consensus       539 ~  539 (540)
                      +
T Consensus       297 ~  297 (300)
T 2qc5_A          297 N  297 (300)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=1.3e-13  Score=127.29  Aligned_cols=244  Identities=8%  Similarity=-0.040  Sum_probs=171.8

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC-CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR-RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      +++|++++.|+.|.+||..+++.+.++..        +. ..+.+++++|+|++|++     . ++.|..||. ++   +
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--------~~~~~~~~~~~~pdG~ilvs-----~-~~~V~~~d~-~G---~   66 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPL--------EKGWECNSVAATKAGEILFS-----Y-SKGAKMITR-DG---R   66 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEEC--------CTTCCCCEEEECTTSCEEEE-----C-BSEEEEECT-TS---C
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCC--------CccCCCcCeEECCCCCEEEe-----C-CCCEEEECC-CC---C
Confidence            68999999999999999999988777742        22 45789999999998884     3 677999998 56   3


Q ss_pred             eEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeec-ccCCcceeEEEeccCCCEEEEE
Q 009203          315 CVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHR-NLHSSAVMGVAGMQQKQIVLSA  392 (540)
Q Consensus       315 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~  392 (540)
                      .+..+..  .....+.++.+.+ +++++++.+. ++.|..+|. +++.++....-.. ..+......+++.++|+++++.
T Consensus        67 ~~W~~~~--~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~  142 (276)
T 3no2_A           67 ELWNIAA--PAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL  142 (276)
T ss_dssp             EEEEEEC--CTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred             EEEEEcC--CCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence            3444443  1124588899999 9999999887 777888886 5554333321110 1122345667889999999999


Q ss_pred             eCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc-cccCeE
Q 009203          393 GADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE-SQSALI  471 (540)
Q Consensus       393 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~v~  471 (540)
                      ..++.|..||.. |+.+..+.......+....+++   .+++++..++.|..+|..+++.....-..  ...+ .-..+.
T Consensus       143 ~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g---~~~v~~~~~~~v~~~d~~tG~~~w~~~~~--~~~~~~l~~~~  216 (276)
T 3no2_A          143 FATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNG---DCLVACGDAHCFVQLNLESNRIVRRVNAN--DIEGVQLFFVA  216 (276)
T ss_dssp             TTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTS---CEEEECBTTSEEEEECTTTCCEEEEEEGG--GSBSCCCSEEE
T ss_pred             cCCCEEEEECCC-CCEEEEEECCCCccceeEcCCC---CEEEEeCCCCeEEEEeCcCCcEEEEecCC--CCCCccccccc
Confidence            999999999998 9988887766566666677766   68888888889999999988754433210  1111 223478


Q ss_pred             EEEEcCCCCEEEEEeCC--------CcEEEEeccCCCCccccccc
Q 009203          472 NQSWSPDGLYITSGSAD--------PVIHLFDIRYSANKPSQSIR  508 (540)
Q Consensus       472 ~~~~sp~g~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~  508 (540)
                      .+...++|+++++....        +..+++.++. +++.+-.+.
T Consensus       217 ~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~-~g~~~W~~~  260 (276)
T 3no2_A          217 QLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDS-EGKVVWQLN  260 (276)
T ss_dssp             EEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECT-TSBEEEEEC
T ss_pred             cceEcCCCCEEEEeccCccccccccCCceEEEECC-CCCEEEEec
Confidence            89999999988887421        2345666643 255554444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.64  E-value=1.8e-13  Score=130.22  Aligned_cols=275  Identities=8%  Similarity=0.013  Sum_probs=182.3

Q ss_pred             CCCCeEEEeccc------hhcc-----cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC
Q 009203          205 ASPATIHCHTSN------HVSS-----LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH  273 (540)
Q Consensus       205 ~~d~~i~~~~~~------~~~~-----~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h  273 (540)
                      ..+.+|.+++..      .++.     ........+++.  +++++++...++.|.+||..+++.+.++..         
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~---------   82 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITG---------   82 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEEC---------
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCC---------
Confidence            346777777654      1111     112446788885  367777777789999999999887666621         


Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC--CcccceeEEEEeCCCCCEEEEEe-cCCc
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP--HVKGIINSIIFLPWENPCFATGG-SDHA  350 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~s~~-~dg~  350 (540)
                      ......+++++++...++.    ..++.|.+||..++   .....+....  ........+++ . ++.++++.. .++.
T Consensus        83 ~~~p~~i~~~~~g~lyv~~----~~~~~v~~iD~~t~---~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~  153 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQ----IWDYRIFIINPKTY---EITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNR  153 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEE----BSCSEEEEEETTTT---EEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCE
T ss_pred             CCCCcEEEEeCCCeEEEEE----CCCCeEEEEECCCC---eEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCE
Confidence            2447789999998544443    47899999999976   3343333211  01114567777 3 555555554 4889


Q ss_pred             EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC----------CeEEEEECCCCCeeeeecc--CccE
Q 009203          351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD----------KRIIGFDAGVGRADFKHQI--ESKC  418 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~--~~~~  418 (540)
                      |.+||+.+++..   ..+.   .......++++|+|++++++..+          +.|.+||..+++.......  ....
T Consensus       154 v~viD~~t~~~~---~~i~---~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p  227 (328)
T 3dsm_A          154 ILKIDTETDKVV---DELT---IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWP  227 (328)
T ss_dssp             EEEEETTTTEEE---EEEE---CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             EEEEECCCCeEE---EEEE---cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCc
Confidence            999999988742   2222   22346789999999977776654          7899999998887655443  3467


Q ss_pred             EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CCCEEEEE----eCCCcEEE
Q 009203          419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DGLYITSG----SADPVIHL  493 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg----~~dg~i~i  493 (540)
                      ..++++|++   ..++++..  .|.+||..+++.....     ........+.+++++| ++.++++.    ..++.|.+
T Consensus       228 ~~la~~~d~---~~lyv~~~--~v~~~d~~t~~~~~~~-----~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v  297 (328)
T 3dsm_A          228 SEVQLNGTR---DTLYWINN--DIWRMPVEADRVPVRP-----FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR  297 (328)
T ss_dssp             EEEEECTTS---CEEEEESS--SEEEEETTCSSCCSSC-----SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred             eeEEEecCC---CEEEEEcc--EEEEEECCCCceeeee-----eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence            899999976   45555543  8999999877642111     1111245689999999 55666665    57899999


Q ss_pred             EeccCCCCcccccccccccceeEEEE
Q 009203          494 FDIRYSANKPSQSIRAHQKRVFKAVW  519 (540)
Q Consensus       494 wd~~~~~~~~~~~~~~h~~~i~~l~~  519 (540)
                      ||..   ++.+.++... .....++|
T Consensus       298 ~d~~---g~~~~~i~~G-~~P~~~~~  319 (328)
T 3dsm_A          298 YSPQ---GKLIDEFYVG-IIPGAFCW  319 (328)
T ss_dssp             ECTT---CCEEEEEEEE-ESEEEEEE
T ss_pred             ECCC---CCEEEEEEec-cCcceEEE
Confidence            9987   5666666532 23455655

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.61  E-value=8.3e-14  Score=147.96  Aligned_cols=285  Identities=9%  Similarity=-0.056  Sum_probs=169.9

Q ss_pred             ecCCCcEEEEEeCCc---eEEEEEcCC----CCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC-CCeEE
Q 009203          232 NPVNEQLFVTSALDG---VIRLWQLQS----RGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG-DSQIS  303 (540)
Q Consensus       232 spd~~~~l~tg~~dg---~v~iw~~~~----~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~-d~~i~  303 (540)
                      +|| |.+++....++   .-.||....    +.....+... .....+|...+..++|||||++|+.+...++. ...|+
T Consensus       115 ~pd-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~-~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          115 QRR-GASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDP-NTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             EEE-TTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECG-GGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred             EEE-CCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECH-HHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence            376 56555554333   366676543    2222222211 11123454568899999999999887433222 25799


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc--------------EEEEecCCCCCccccceee
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA--------------VVLWSERDAEDSWKPKALH  369 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~--------------i~iwd~~~~~~~~~~~~~~  369 (540)
                      +||+.++..   +....    +...+..++|+| + +.|+.++.++.              |++|++.++.... .....
T Consensus       193 v~dl~tg~~---~~~~~----~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-~lv~~  262 (741)
T 1yr2_A          193 FVGVADGKP---LADEL----KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD-QPVFA  262 (741)
T ss_dssp             EEETTTCCE---EEEEE----EEEESCCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC-EEEEC
T ss_pred             EEECCCCCC---CCccC----CCceeccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC-EEEec
Confidence            999998732   22211    112246789999 7 88888776654              8999998765210 11222


Q ss_pred             cccCCcceeEEEeccCCCEEEEEeCCC-----eEEEEECCCC--C-eeeeeccCccEEEEeecCCCCCceEEEEEcC---
Q 009203          370 RNLHSSAVMGVAGMQQKQIVLSAGADK-----RIIGFDAGVG--R-ADFKHQIESKCMSVLPNPCDFNLFMVQTGTP---  438 (540)
Q Consensus       370 ~~~~~~~v~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---  438 (540)
                      ...+...+.++.|+|||++|+..+.++     .|++||+.++  . ............... .|++   ..|+..+.   
T Consensus       263 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg---~~l~~~s~~~~  338 (741)
T 1yr2_A          263 TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG---DQLWFVSGDGA  338 (741)
T ss_dssp             CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEET---TEEEEEECTTC
T ss_pred             cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccC---CEEEEEECCCC
Confidence            222334688999999999988877544     8999999876  4 322222222223332 2544   34444443   


Q ss_pred             -CCeEEEEECCCCc-ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-ccccee
Q 009203          439 -GRQLRLYDIRLRQ-TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVF  515 (540)
Q Consensus       439 -dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~  515 (540)
                       ++.|.+||+.+.. ....      .+..+...+..++|+ ++.++++...|+..+||.++.. +.....+.. +.+.|.
T Consensus       339 ~~~~l~~~d~~~~~~~~~~------l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~  410 (741)
T 1yr2_A          339 PLKKIVRVDLSGSTPRFDT------VVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD-GKPAGAVSLPGIGSAS  410 (741)
T ss_dssp             TTCEEEEEECSSSSCEEEE------EECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT-SCEEEECBCSSSCEEE
T ss_pred             CCCEEEEEeCCCCccccEE------EecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC-CCceeeccCCCCeEEE
Confidence             4569999998742 1111      112334456778887 6677888888998888766532 444455544 356789


Q ss_pred             EEEEcCCCCEEEE-EE---cCCcEEEEeC
Q 009203          516 KAVWHYSHPLLIS-IS---SDLNIGLHKI  540 (540)
Q Consensus       516 ~l~~s~~~~~l~s-~~---~dg~v~iw~l  540 (540)
                      .+.++|+++.|+. .+   ..++|++||+
T Consensus       411 ~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          411 GLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             EeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            9999999875552 22   3478888874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.59  E-value=1.9e-12  Score=131.31  Aligned_cols=280  Identities=13%  Similarity=0.011  Sum_probs=185.0

Q ss_pred             CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecC--CCCC
Q 009203          235 NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN--KTKG  312 (540)
Q Consensus       235 ~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~--~~~~  312 (540)
                      ++.++++...+++|.++|..+++.+.++...         ..+..+.|+|||++++++    +.++.|.+||+.  +.  
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g---------~~p~~v~~SpDGr~lyv~----~~dg~V~viD~~~~t~--  230 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG---------YAVHISRLSASGRYLFVI----GRDGKVNMIDLWMKEP--  230 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS---------SCEEEEEECTTSCEEEEE----ETTSEEEEEETTSSSC--
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCC---------CCccceEECCCCCEEEEE----cCCCeEEEEECCCCCC--
Confidence            3567778888999999999998877666321         235689999999999998    889999999996  44  


Q ss_pred             ceeEEeecCCCCcccceeEEEEe----CCCCCEEEEEe-cCCcEEEEecCCCCCccccceeec--c---cCC-cceeEEE
Q 009203          313 RACVTFLDDKPHVKGIINSIIFL----PWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHR--N---LHS-SAVMGVA  381 (540)
Q Consensus       313 ~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~--~---~~~-~~v~~l~  381 (540)
                       ..+..+..    ......++|+    | ++++++++. .+++|.++|..+.+.+..+.....  .   .|. ..+..+.
T Consensus       231 -~~v~~i~~----G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~  304 (567)
T 1qks_A          231 -TTVAEIKI----GSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL  304 (567)
T ss_dssp             -CEEEEEEC----CSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred             -cEeEEEec----CCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence             33444432    2346799999    7 888776655 559999999988775322221110  0   022 2677888


Q ss_pred             eccCCCE-EEEEeCCCeEEEEECCCCCeee--eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec
Q 009203          382 GMQQKQI-VLSAGADKRIIGFDAGVGRADF--KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG  458 (540)
Q Consensus       382 ~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~  458 (540)
                      +++++.. ++....+|.|.++|......+.  ..........+.|+|++.  .++++...++.|.++|+.+++.... +.
T Consensus       305 ~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr--~~~va~~~sn~V~ViD~~t~kl~~~-i~  381 (567)
T 1qks_A          305 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR--YFITAANARNKLVVIDTKEGKLVAI-ED  381 (567)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC--EEEEEEGGGTEEEEEETTTTEEEEE-EE
T ss_pred             EcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC--EEEEEeCCCCeEEEEECCCCcEEEE-Ee
Confidence            8887654 4455667999999998754322  233445666788999872  2445556788999999998864332 21


Q ss_pred             cccccCccccCeEEEEEcCCCCEE-EEEe-CCCcEEEEeccCCC-----CcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203          459 WKQESSESQSALINQSWSPDGLYI-TSGS-ADPVIHLFDIRYSA-----NKPSQSIRAHQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~l-~sg~-~dg~i~iwd~~~~~-----~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      . .....|.+.-..+ ++|++..+ +++. .++.|.++|.....     .+.+.++......-..+..+|++++|.....
T Consensus       382 v-gg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~  459 (567)
T 1qks_A          382 T-GGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT  459 (567)
T ss_dssp             C-SSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred             c-cCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecC
Confidence            1 0112343222222 68875544 4443 46899999998632     2445555544333355778999998887652


Q ss_pred             -------CCcEEEEeC
Q 009203          532 -------DLNIGLHKI  540 (540)
Q Consensus       532 -------dg~v~iw~l  540 (540)
                             ..+|.|+|+
T Consensus       460 ~~~~~~~~~~v~v~d~  475 (567)
T 1qks_A          460 LNPEAEISGSVAVFDI  475 (567)
T ss_dssp             TCSSHHHHTCEEEEEG
T ss_pred             CCCCcccCceEEEEEC
Confidence                   358888874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=1.1e-12  Score=124.16  Aligned_cols=245  Identities=11%  Similarity=0.092  Sum_probs=161.6

Q ss_pred             CCceeEEEecCCCeEEE-------EeecCCCCCeEEEEecCCCCCceeEEeec-CCCCcccceeEEEEeCCC-CCEEEEE
Q 009203          275 RWPEDIAWHPQGNSLFS-------AHTADSGDSQISVLNLNKTKGRACVTFLD-DKPHVKGIINSIIFLPWE-NPCFATG  345 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s-------~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~-~~~l~s~  345 (540)
                      ....+++|+++|.++++       .    ..++.|.+||..+++.   ..... ....+...+.++++++ + +.++++.
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~----~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~   89 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNG----KPAGEILRIDLKTGKK---TVICKPEVNGYGGIPAGCQCDR-DANQLFVAD   89 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETT----EECCEEEEECTTTCCE---EEEECCEETTEECCEEEEEECS-SSSEEEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCC----CCCCEEEEEeCCCCcE---EEEEecccCCCCCCCceEEEec-CCCcEEEEE
Confidence            34678999999988877       4    5678999999876632   22111 0001235689999999 7 6655554


Q ss_pred             ecCCcEEEEecCCCCCcccccee-ec---ccCCcceeEEEeccCCCEEEEEeCC---------------CeEEEEECCCC
Q 009203          346 GSDHAVVLWSERDAEDSWKPKAL-HR---NLHSSAVMGVAGMQQKQIVLSAGAD---------------KRIIGFDAGVG  406 (540)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~-~~---~~~~~~v~~l~~s~~~~~l~~~~~d---------------g~i~iwd~~~~  406 (540)
                      . .+.|.+||.. ++.    ..+ ..   ......+.+++++++|+++++...+               +.|..||.. +
T Consensus        90 ~-~~~l~~~d~~-g~~----~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (314)
T 1pjx_A           90 M-RLGLLVVQTD-GTF----EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G  162 (314)
T ss_dssp             T-TTEEEEEETT-SCE----EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred             C-CCCEEEEeCC-CCE----EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence            4 4579999988 553    211 11   1123458899999999888877655               578888876 5


Q ss_pred             CeeeeeccCccEEEEeec----CCCCCceEEEEEcCCCeEEEEECC-CCcceeeeeccccccCccc-cCeEEEEEcCCCC
Q 009203          407 RADFKHQIESKCMSVLPN----PCDFNLFMVQTGTPGRQLRLYDIR-LRQTEIHAFGWKQESSESQ-SALINQSWSPDGL  480 (540)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~  480 (540)
                      +.............++++    |++.  .++++...++.|.+||+. ++......  ....+..+. ..+..++++++|+
T Consensus       163 ~~~~~~~~~~~~~~i~~~~~~d~dg~--~l~v~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~p~~i~~d~~G~  238 (314)
T 1pjx_A          163 QMIQVDTAFQFPNGIAVRHMNDGRPY--QLIVAETPTKKLWSYDIKGPAKIENKK--VWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             CEEEEEEEESSEEEEEEEECTTSCEE--EEEEEETTTTEEEEEEEEETTEEEEEE--EEEECCCCSSCEEEEEEEBTTCC
T ss_pred             CEEEeccCCCCcceEEEecccCCCCC--EEEEEECCCCeEEEEECCCCCccccce--EEEECCCCCCCCCCceEECCCCC
Confidence            543332323345667777    7651  234555678999999986 33211000  011223333 5678899999999


Q ss_pred             EEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEE-EEEEcCCcEEEEeC
Q 009203          481 YITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL-ISISSDLNIGLHKI  540 (540)
Q Consensus       481 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l-~s~~~dg~v~iw~l  540 (540)
                      ++++...++.|.+||..+  ++.+..+..+...+.+++|+++|+.| ++...++.|..|++
T Consensus       239 l~v~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          239 LLVANWGSSHIEVFGPDG--GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEEETTTEEEEECTTC--BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EEEEEcCCCEEEEEcCCC--CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            888887889999999885  45555566666789999999999944 55556678888874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.58  E-value=9.9e-12  Score=116.42  Aligned_cols=236  Identities=12%  Similarity=0.019  Sum_probs=167.6

Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      ...+.++++.++|.++++.    ..++.|.+||.. +.    +..+... .....+.++++.+ ++.++++...++.|..
T Consensus        14 ~~~~~~i~~d~~g~l~v~~----~~~~~v~~~d~~-~~----~~~~~~~-~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~   82 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQ----HKANMISCINLD-GK----ITEYPLP-TPDAKVMCLTISS-DGEVWFTENAANKIGR   82 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEE----TTTTEEEEECTT-CC----EEEEECS-STTCCEEEEEECT-TSCEEEEETTTTEEEE
T ss_pred             CCCccceEECCCCCEEEEe----cCCCcEEEEcCC-CC----eEEecCC-cccCceeeEEECC-CCCEEEeCCCCCeEEE
Confidence            3568899999999988876    668999999988 42    1221111 1235689999999 8888887777888999


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee--ccCccEEEEeecCCCCCce
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH--QIESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  431 (540)
                      ||.. +.    ...+........+.++++.++|.++++...++.|.+||. ++......  ........+.+++++   .
T Consensus        83 ~~~~-g~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g---~  153 (299)
T 2z2n_A           83 ITKK-GI----IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN---A  153 (299)
T ss_dssp             ECTT-SC----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS---C
T ss_pred             ECCC-Cc----EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC---C
Confidence            9986 33    222222224557899999999988888777889999999 55543221  123567788888876   5


Q ss_pred             EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc-ccccc
Q 009203          432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ-SIRAH  510 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~h  510 (540)
                      ++++...++.|..||. ++.....      ........+.+++++++|.++++...++.|.+||. +  +.... ....+
T Consensus       154 l~v~~~~~~~i~~~~~-~g~~~~~------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~--g~~~~~~~~~~  223 (299)
T 2z2n_A          154 LWFTENQNNAIGRITE-SGDITEF------KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-S--GEITEFKIPTP  223 (299)
T ss_dssp             EEEEETTTTEEEEECT-TCCEEEE------ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T--CCEEEEECSST
T ss_pred             EEEEeCCCCEEEEEcC-CCcEEEe------eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-C--CcEEEEECCCC
Confidence            6666777789999998 5443221      11223456889999999998777777889999998 4  33221 22334


Q ss_pred             ccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          511 QKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       511 ~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ...+.+++++++|.++++...++.|.+||
T Consensus       224 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          224 NARPHAITAGAGIDLWFTEWGANKIGRLT  252 (299)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             CCCceeEEECCCCCEEEeccCCceEEEEC
Confidence            56789999999999777766778888887

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.57  E-value=1.5e-13  Score=132.13  Aligned_cols=220  Identities=11%  Similarity=0.055  Sum_probs=145.9

Q ss_pred             CceeEEEecCCCeEEEEeec-----CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC--
Q 009203          276 WPEDIAWHPQGNSLFSAHTA-----DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD--  348 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~-----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d--  348 (540)
                      .+..++|  ||+.|+.....     +..++.|.+||+.++..   . .+       ..+..++|+| +|+.|+.++.+  
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~---~-~l-------~~~~~~~~Sp-Dg~~la~~~~~~~   81 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR---R-FI-------ENATMPRISP-DGKKIAFMRANEE   81 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE---E-EE-------ESCEEEEECT-TSSEEEEEEEETT
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce---E-Ec-------ccCCCeEECC-CCCEEEEEEeccC
Confidence            3567778  88888765211     12367899999987632   2 22       2378899999 99998887654  


Q ss_pred             -C--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC---------------------------CeE
Q 009203          349 -H--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD---------------------------KRI  398 (540)
Q Consensus       349 -g--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---------------------------g~i  398 (540)
                       +  .|++||+.+++.    ..+..  +.. +..++|+|||+.|+.++.+                           ..|
T Consensus        82 ~~~~~l~~~~~~~g~~----~~l~~--~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  154 (347)
T 2gop_A           82 KKVSEIWVADLETLSS----KKILE--AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF  154 (347)
T ss_dssp             TTEEEEEEEETTTTEE----EEEEE--ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred             CCcceEEEEECCCCce----EEEEc--CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence             2  388888887763    22322  223 8999999999998887642                           579


Q ss_pred             EEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCC------C-eEEEEECCCCcceeeeeccccccCccccCeE
Q 009203          399 IGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPG------R-QLRLYDIRLRQTEIHAFGWKQESSESQSALI  471 (540)
Q Consensus       399 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~  471 (540)
                      ++||+.+++.+...... .+..+.|+|++    +++++..+      . ...||.+.+++. ...       ..+ ..+.
T Consensus       155 ~~~d~~~~~~~~~l~~~-~~~~~~~spdg----~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l-------~~~-~~~~  220 (347)
T 2gop_A          155 WIFDTESEEVIEEFEKP-RFSSGIWHRDK----IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKM-------FEK-VSFY  220 (347)
T ss_dssp             EEEETTTTEEEEEEEEE-TTCEEEEETTE----EEEEEECCCSSCCSSCCEEEEEEETTEE-EEE-------EEE-ESEE
T ss_pred             EEEECCCCeEEeeecCC-CcccccCCCCe----EEEEEecccccccccccccEEEeCCCce-EEe-------ccC-ccee
Confidence            99999988762222223 66788899876    45555433      2 334444433332 111       122 3444


Q ss_pred             EEEEcCCCCEEEEEeCC--------CcEEEEeccCCCCcccccccccccceeE-EEEcCCCCEEEEEEcCCcEEEE
Q 009203          472 NQSWSPDGLYITSGSAD--------PVIHLFDIRYSANKPSQSIRAHQKRVFK-AVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       472 ~~~~sp~g~~l~sg~~d--------g~i~iwd~~~~~~~~~~~~~~h~~~i~~-l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      .+  +|||++|+.++.+        ..|++||  +  +........|...+.. +.|+ |+ ++++++.++.++||
T Consensus       221 ~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~--~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~  288 (347)
T 2gop_A          221 AV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G--KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY  288 (347)
T ss_dssp             EE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S--SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred             eE--CCCCCEEEEEEccccCCccccceEEEEC--C--CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence            44  9999998877654        3678888  3  4444445566777886 9999 88 99999999999998

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.54  E-value=2.3e-11  Score=117.29  Aligned_cols=277  Identities=9%  Similarity=-0.112  Sum_probs=168.7

Q ss_pred             ecCCCcEEEEEeC--Cc---eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec------CCCCC
Q 009203          232 NPVNEQLFVTSAL--DG---VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA------DSGDS  300 (540)
Q Consensus       232 spd~~~~l~tg~~--dg---~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~------~~~d~  300 (540)
                      .|+ ++++.+...  ..   +|.+||..+++.+.++..       + ..+  .++|+|||++|+++...      |..++
T Consensus        29 ~~~-~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~-------g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~   97 (373)
T 2mad_H           29 GAD-GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-------G-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             CCC-CCEEEEeCCcccCCccEEEEEECCCCeEEEEecC-------C-CCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence            354 455554432  22   889999998876544421       1 122  79999999999987210      01367


Q ss_pred             eEEEEecCCCCCceeEEeecCC----CCcccceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccce-eecccC
Q 009203          301 QISVLNLNKTKGRACVTFLDDK----PHVKGIINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKA-LHRNLH  373 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~-~~~~~~  373 (540)
                      .|.+||..+.+.   +..+...    .........++|+| ++++|+++..  ++.|.++| .+++..   .. +.   .
T Consensus        98 ~v~viD~~t~~~---~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~---~~~i~---~  166 (373)
T 2mad_H           98 YVEVFDPVTFLP---IADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSD---DQLLS---S  166 (373)
T ss_pred             eEEEEECCCCcE---EEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEE---eEEcC---C
Confidence            899999987632   3332211    00012356899999 9999988764  47899999 887642   12 11   1


Q ss_pred             CcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeec-----cCc-c-EEEEeecCCCCCceEEEEEcCCCeEEEE
Q 009203          374 SSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQ-----IES-K-CMSVLPNPCDFNLFMVQTGTPGRQLRLY  445 (540)
Q Consensus       374 ~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-~-~~~~~~~~~~~~~~~l~~~~~dg~v~i~  445 (540)
                      ..   ++.+.|++ ..+++.+.||.+.++|. +++......     ... . .....+.+++.  .++++. ..+.+.+.
T Consensus       167 ~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~-~~~~v~vi  239 (373)
T 2mad_H          167 PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPV-YSGKILQA  239 (373)
T ss_pred             Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC--EEEEEc-CCceEEEE
Confidence            11   24444554 45666778999999999 777652211     111 1 11223334331  233333 57899999


Q ss_pred             ECCCCccee-eeecccc----ccCccccCeEEEEEcCCCCEEEEEeC----------CCcEEEEeccCCCCccccccccc
Q 009203          446 DIRLRQTEI-HAFGWKQ----ESSESQSALINQSWSPDGLYITSGSA----------DPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       446 d~~~~~~~~-~~~~~~~----~~~~~~~~v~~~~~sp~g~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      |+....... ..+....    ...-.......+.++|+++.|+++..          ++.|.++|+.+  .+.+.++.. 
T Consensus       240 d~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t--~~vv~~i~~-  316 (373)
T 2mad_H          240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--GQTSSQISL-  316 (373)
T ss_pred             eccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC--CEEEEEEEC-
Confidence            997553211 1111000    00001123445789999988877643          35799999987  677777753 


Q ss_pred             ccceeEEEEcCCCC-EEEEEE-cCCcEEEEeC
Q 009203          511 QKRVFKAVWHYSHP-LLISIS-SDLNIGLHKI  540 (540)
Q Consensus       511 ~~~i~~l~~s~~~~-~l~s~~-~dg~v~iw~l  540 (540)
                      .....+++|+|||+ +++++. .++.|.+||+
T Consensus       317 g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          317 GHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             CCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            33589999999999 777777 5899999985

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.54  E-value=2.5e-12  Score=118.70  Aligned_cols=214  Identities=11%  Similarity=0.056  Sum_probs=154.3

Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK  364 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  364 (540)
                      .+++|+++    +.++.|.+||..++   +.+-.+....  ...+.++.+.| ++++++  +.++.|..||. +++.+|+
T Consensus         4 ~~~~lv~~----~~~~~v~~~d~~tG---~~~w~~~~~~--~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~   70 (276)
T 3no2_A            4 PQHLLVGG----SGWNKIAIINKDTK---EIVWEYPLEK--GWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWN   70 (276)
T ss_dssp             CCEEEEEC----TTCSEEEEEETTTT---EEEEEEECCT--TCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEE
T ss_pred             CCcEEEee----CCCCEEEEEECCCC---eEEEEeCCCc--cCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEE
Confidence            35688888    99999999999887   4444444311  13588999999 999888  34678999999 7776554


Q ss_pred             cceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCCCeeeeeccCc-------cEEEEeecCCCCCceEEEEE
Q 009203          365 PKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVGRADFKHQIES-------KCMSVLPNPCDFNLFMVQTG  436 (540)
Q Consensus       365 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~  436 (540)
                      ...    .....+.++.+.++|+++++.+. ++.|..+|. +|+.+.......       ....+.+.+++   .++++.
T Consensus        71 ~~~----~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G---~~lv~~  142 (276)
T 3no2_A           71 IAA----PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG---NYLVPL  142 (276)
T ss_dssp             EEC----CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS---CEEEEE
T ss_pred             EcC----CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC---CEEEEe
Confidence            432    12346888999999999999887 888888886 577655443211       12233445555   689999


Q ss_pred             cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccc-----
Q 009203          437 TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ-----  511 (540)
Q Consensus       437 ~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~-----  511 (540)
                      ..++.|..||.. ++... .+..       ...+.++.+.++|+++++++.++.|..||..+  ++.+..+..+.     
T Consensus       143 ~~~~~v~~~d~~-G~~~w-~~~~-------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t--G~~~w~~~~~~~~~~~  211 (276)
T 3no2_A          143 FATSEVREIAPN-GQLLN-SVKL-------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES--NRIVRRVNANDIEGVQ  211 (276)
T ss_dssp             TTTTEEEEECTT-SCEEE-EEEC-------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT--CCEEEEEEGGGSBSCC
T ss_pred             cCCCEEEEECCC-CCEEE-EEEC-------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC--CcEEEEecCCCCCCcc
Confidence            999999999998 65433 2211       13456788899999999998888999999987  66666654332     


Q ss_pred             -cceeEEEEcCCCCEEEEEE
Q 009203          512 -KRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       512 -~~i~~l~~s~~~~~l~s~~  530 (540)
                       ..+..++..++|.++++..
T Consensus       212 l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          212 LFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CSEEEEEEECTTSCEEEEEE
T ss_pred             ccccccceEcCCCCEEEEec
Confidence             2378888899999888773

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.52  E-value=2.4e-12  Score=136.67  Aligned_cols=263  Identities=11%  Similarity=0.021  Sum_probs=158.8

Q ss_pred             EEEeccchhcccccCceEEEEEecCCCcEEEEEeCC-----ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec
Q 009203          210 IHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALD-----GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP  284 (540)
Q Consensus       210 i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~  284 (540)
                      -.+.+...+-.+|...+..++|||| |++||.++.+     ..|++||+.+++.......         ...+..++|+|
T Consensus       149 ~~lld~~~l~~~~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~---------~~~~~~~~wsp  218 (741)
T 1yr2_A          149 RVLLDPNTWAKDGATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK---------WVKFSGLAWLG  218 (741)
T ss_dssp             EEEECGGGCC----EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE---------EEESCCCEEST
T ss_pred             EEEECHHHhccCCCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC---------CceeccEEEEC
Confidence            3444555445666667899999997 7888776543     4699999998875332111         11135799999


Q ss_pred             CCCeEEEEeecCCC----------CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-----
Q 009203          285 QGNSLFSAHTADSG----------DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-----  349 (540)
Q Consensus       285 ~~~~l~s~~~~~~~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-----  349 (540)
                      | +.|+.+...+..          ...|++|++.++.... ...+.. ..+...+..+.|+| +|++|+..+.++     
T Consensus       219 D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~-~lv~~~-~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~  294 (741)
T 1yr2_A          219 N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD-QPVFAT-PELPKRGHGASVSS-DGRWVVITSSEGTDPVN  294 (741)
T ss_dssp             T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC-EEEECC-TTCTTCEEEEEECT-TSCEEEEEEECTTCSCC
T ss_pred             C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC-EEEecc-CCCCeEEEEEEECC-CCCEEEEEEEccCCCcc
Confidence            9 988887211110          2348999998763211 222332 12233588999999 999888877544     


Q ss_pred             cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC----CCeEEEEECCCCC--eeeeec-cCccEEEEe
Q 009203          350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA----DKRIIGFDAGVGR--ADFKHQ-IESKCMSVL  422 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~--~~~~~~-~~~~~~~~~  422 (540)
                      .|++||+.++... ....+.  .+...+.... +|+|+.|+..+.    ++.|.+||+.++.  ...... ....+..+.
T Consensus       295 ~l~~~d~~~~~~~-~~~~l~--~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~  370 (741)
T 1yr2_A          295 TVHVARVTNGKIG-PVTALI--PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG  370 (741)
T ss_dssp             EEEEEEEETTEEC-CCEEEE--CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE
T ss_pred             eEEEEECCCCCCc-ccEEec--CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE
Confidence            7999999876210 012222  2333444443 488998888776    3459999998752  222222 223344566


Q ss_pred             ecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE----eCCCcEEEEeccC
Q 009203          423 PNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG----SADPVIHLFDIRY  498 (540)
Q Consensus       423 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg----~~dg~i~iwd~~~  498 (540)
                      +. .+   .++++...++..+||.+.........+    . ..+...+..++++|+++.|+..    ...+.|++||+.+
T Consensus       371 ~~-~~---~lv~~~~~dg~~~l~~~~~~g~~~~~l----~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          371 IA-GN---RLFASYIHDAKSQVLAFDLDGKPAGAV----S-LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EE-BT---EEEEEEEETTEEEEEEEETTSCEEEEC----B-CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             EE-CC---EEEEEEEECCEEEEEEEeCCCCceeec----c-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            65 22   578888888887777554211122211    1 1134568889999999866633    2357899999986


Q ss_pred             C
Q 009203          499 S  499 (540)
Q Consensus       499 ~  499 (540)
                      +
T Consensus       442 g  442 (741)
T 1yr2_A          442 A  442 (741)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=8.6e-12  Score=122.11  Aligned_cols=243  Identities=9%  Similarity=-0.012  Sum_probs=164.4

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC--cEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH--AVV  352 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--~i~  352 (540)
                      .....++|+++++++++.    ..++.|++||..++   ........    ..... ++|+| +++.|+++..++  .|.
T Consensus       131 ~~P~~la~d~~g~lyv~d----~~~~~I~~id~~~g---~~~~~~~~----~~~~~-ia~~~-~g~~l~~~d~~~~~~I~  197 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQ----RDDPRVRLISVDDN---KVTTVHPG----FKGGK-PAVTK-DKQRVYSIGWEGTHTVY  197 (409)
T ss_dssp             CCEEEEEECSTTEEEEEE----TTTTEEEEEETTTT---EEEEEEET----CCBCB-CEECT-TSSEEEEEBSSTTCEEE
T ss_pred             CCceEEEEeCCCCEEEEe----cCCCcEEEEECCCC---EEEEeecc----CCCCc-eeEec-CCCcEEEEecCCCceEE
Confidence            457899999999977777    77899999999865   33333332    12234 99999 888888887766  788


Q ss_pred             EEecCCCCCcccccee-ec-ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee----eccCc-cE-E-EEee
Q 009203          353 LWSERDAEDSWKPKAL-HR-NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK----HQIES-KC-M-SVLP  423 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~-~~-~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~-~~-~-~~~~  423 (540)
                      +|+...+..   ...+ .. ......+.+++++|++..|+++..++.|+.||..++.....    ..... .. . .+++
T Consensus       198 ~~d~~~~~~---~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~  274 (409)
T 3hrp_A          198 VYMKASGWA---PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY  274 (409)
T ss_dssp             EEEGGGTTC---EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred             EEEcCCCce---eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence            888876542   1111 00 11345678999999555566677789999999987764332    11111 11 2 8888


Q ss_pred             cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc---ccc-----CccccCeEEEEEcCCCCEEEEEe-CCCcEEEE
Q 009203          424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK---QES-----SESQSALINQSWSPDGLYITSGS-ADPVIHLF  494 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~---~~~-----~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iw  494 (540)
                      +|.+.  .++++...++.|+.|+.....  ....+..   ...     ...-.....++|+|+|+++++-. .++.|+.|
T Consensus       275 ~p~~g--~lyv~d~~~~~I~~~~~~g~~--~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~  350 (409)
T 3hrp_A          275 YFVDS--NFYMSDQNLSSVYKITPDGEC--EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL  350 (409)
T ss_dssp             ETTTT--EEEEEETTTTEEEEECTTCCE--EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred             eCCCC--EEEEEeCCCCEEEEEecCCCE--EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence            88532  577777888999999987542  1111110   000     01123588999999999888887 88999999


Q ss_pred             eccCCCCccccccccc---------------ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          495 DIRYSANKPSQSIRAH---------------QKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       495 d~~~~~~~~~~~~~~h---------------~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++.+  +. +.++.++               -.....|+++++|.++++-..++.|+.+++
T Consensus       351 ~~~~--G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          351 DILD--GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ETTT--TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             ECCC--CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            9764  33 3333333               235889999999988888888899988763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=1.3e-11  Score=116.67  Aligned_cols=243  Identities=8%  Similarity=0.036  Sum_probs=159.3

Q ss_pred             CceEEEEEecCCCcEEEE-------EeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC-CCeEEEEeec
Q 009203          224 RKLRSLSLNPVNEQLFVT-------SALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ-GNSLFSAHTA  295 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~t-------g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~s~~~~  295 (540)
                      ....+++|+++ +.++++       +..++.|.+||..+++.. .+... .  ..++...+.+++++++ |+++++.   
T Consensus        18 ~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~-~--~~~~~~~~~~i~~~~~~g~l~v~~---   89 (314)
T 1pjx_A           18 PGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKP-E--VNGYGGIPAGCQCDRDANQLFVAD---   89 (314)
T ss_dssp             TTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECC-E--ETTEECCEEEEEECSSSSEEEEEE---
T ss_pred             CCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEec-c--cCCCCCCCceEEEecCCCcEEEEE---
Confidence            45789999985 788877       567889999998776542 22110 0  0134456889999999 7656554   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEe-ecCC-CCcccceeEEEEeCCCCCEEEEEecC---------------CcEEEEecCC
Q 009203          296 DSGDSQISVLNLNKTKGRACVTF-LDDK-PHVKGIINSIIFLPWENPCFATGGSD---------------HAVVLWSERD  358 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~-~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~d---------------g~i~iwd~~~  358 (540)
                       . .+.|.+||.. ++   .... .... ......+.++++++ ++.++++...+               +.|..||.. 
T Consensus        90 -~-~~~l~~~d~~-g~---~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (314)
T 1pjx_A           90 -M-RLGLLVVQTD-GT---FEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-  161 (314)
T ss_dssp             -T-TTEEEEEETT-SC---EEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred             -C-CCCEEEEeCC-CC---EEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence             3 4478999987 52   2222 2111 11224588999999 88888777654               567777765 


Q ss_pred             CCCccccceeecccCCcceeEEEec----cCCCEEEEE-eCCCeEEEEECC-CCCe-----eeeeccC--ccEEEEeecC
Q 009203          359 AEDSWKPKALHRNLHSSAVMGVAGM----QQKQIVLSA-GADKRIIGFDAG-VGRA-----DFKHQIE--SKCMSVLPNP  425 (540)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~v~~l~~s----~~~~~l~~~-~~dg~i~iwd~~-~~~~-----~~~~~~~--~~~~~~~~~~  425 (540)
                      ++.    ..+.  .+......++|+    ++++.++.+ ..++.|.+||+. .+..     .......  .....+++++
T Consensus       162 g~~----~~~~--~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~  235 (314)
T 1pjx_A          162 GQM----IQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE  235 (314)
T ss_dssp             SCE----EEEE--EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred             CCE----EEec--cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence            432    2221  133456889999    999766555 567899999986 3432     1111111  4567788888


Q ss_pred             CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeccC
Q 009203          426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT-SGSADPVIHLFDIRY  498 (540)
Q Consensus       426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-sg~~dg~i~iwd~~~  498 (540)
                      ++   .++++...++.|.+||..+++.... +      ..+...+.+++|+|+|+.|+ +...++.|..|++..
T Consensus       236 ~G---~l~v~~~~~~~i~~~d~~~g~~~~~-~------~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          236 DN---NLLVANWGSSHIEVFGPDGGQPKMR-I------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TC---CEEEEEETTTEEEEECTTCBSCSEE-E------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CC---CEEEEEcCCCEEEEEcCCCCcEeEE-E------eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            77   5677776788999999885543221 1      22346789999999999554 455668899999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.50  E-value=9.5e-11  Score=109.70  Aligned_cols=236  Identities=12%  Similarity=0.019  Sum_probs=166.8

Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      ...+.++++.++|.+.++.    ..++.|.+||.. +.. . ...+.   .....+.++++.+ ++.++++...++.|..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~----~~~~~v~~~~~~-~~~-~-~~~~~---~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~   87 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQ----HKANKISSLDQS-GRI-K-EFEVP---TPDAKVMCLIVSS-LGDIWFTENGANKIGK   87 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEE----TTTTEEEEECTT-SCE-E-EEECS---STTCCEEEEEECT-TSCEEEEETTTTEEEE
T ss_pred             CCCcceeeECCCCCEEEEc----CCCCeEEEECCC-Cce-E-EEECC---CCCCcceeEEECC-CCCEEEEecCCCeEEE
Confidence            3457899999999988877    778999999987 421 1 11121   1235689999998 8888877766788999


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-ec-cCccEEEEeecCCCCCce
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQ-IESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~  431 (540)
                      ||.. ++.    ..+........+.++++.++|.++++...++.|..||.. ++.... .. .......+.+++++   .
T Consensus        88 ~d~~-g~~----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g---~  158 (300)
T 2qc5_A           88 LSKK-GGF----TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN---A  158 (300)
T ss_dssp             ECTT-SCE----EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS---S
T ss_pred             ECCC-CCe----EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC---C
Confidence            9987 542    222222234678999999999988877778899999988 655422 12 23567788888876   5


Q ss_pred             EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc-ccccc
Q 009203          432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ-SIRAH  510 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~-~~~~h  510 (540)
                      ++++...++.|..||. ++....  +    ....+...+.+++++++|.++++....+.|.+|+..   +.... .+..+
T Consensus       159 l~v~~~~~~~i~~~~~-~g~~~~--~----~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~---g~~~~~~~~~~  228 (300)
T 2qc5_A          159 LWFTENQNNSIGRITN-TGKLEE--Y----PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT---GEISEYDIPTP  228 (300)
T ss_dssp             EEEEETTTTEEEEECT-TCCEEE--E----ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT---CCEEEEECSST
T ss_pred             EEEEecCCCeEEEECC-CCcEEE--e----eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC---CcEEEEECCCC
Confidence            6666666789999998 443222  1    112334568999999999887777777889999984   33222 23334


Q ss_pred             ccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          511 QKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       511 ~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ...+.+++++++|.++++...++.|.+|+
T Consensus       229 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          229 NARPHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             CCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence            55789999999999777776678888886

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.50  E-value=3.3e-11  Score=112.90  Aligned_cols=227  Identities=7%  Similarity=-0.020  Sum_probs=152.5

Q ss_pred             ceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          277 PEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       277 V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      ..+..|++++. ++++.    ..++.|..||..++.    ...+..    ...+.++++++ +++++++ . ++.|.+||
T Consensus        15 ~Egp~w~~~~~~l~~~d----~~~~~i~~~d~~~~~----~~~~~~----~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d   79 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVD----IPAKKVCRWDSFTKQ----VQRVTM----DAPVSSVALRQ-SGGYVAT-I-GTKFCALN   79 (297)
T ss_dssp             EEEEEEETTTTEEEEEE----TTTTEEEEEETTTCC----EEEEEC----SSCEEEEEEBT-TSSEEEE-E-TTEEEEEE
T ss_pred             ccCCeEECCCCEEEEEE----CCCCEEEEEECCCCc----EEEEeC----CCceEEEEECC-CCCEEEE-E-CCeEEEEE
Confidence            35789999655 55555    788999999998752    122221    35689999999 8885554 4 56799999


Q ss_pred             cCCCCCccccceeecc---cCCcceeEEEeccCCCEEEEEeC-----------CCeEEEEECCCCCeeeeeccCccEEEE
Q 009203          356 ERDAEDSWKPKALHRN---LHSSAVMGVAGMQQKQIVLSAGA-----------DKRIIGFDAGVGRADFKHQIESKCMSV  421 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~  421 (540)
                      ..+++.    ..+...   .....+++++++|+|+++++...           .+.|..+|.. ++.............+
T Consensus        80 ~~~g~~----~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi  154 (297)
T 3g4e_A           80 WKEQSA----VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGL  154 (297)
T ss_dssp             TTTTEE----EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEE
T ss_pred             CCCCcE----EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccce
Confidence            987763    222211   12345889999999997765432           2345555543 3433333333456789


Q ss_pred             eecCCCCCceEEEEEcCCCeEEEEECC--CCccee-eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          422 LPNPCDFNLFMVQTGTPGRQLRLYDIR--LRQTEI-HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       422 ~~~~~~~~~~~l~~~~~dg~v~i~d~~--~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      +++|++.  .++++.+.++.|.+||+.  ++.... ..+   ..+..+...+..++++++|++.++...++.|.+||..+
T Consensus       155 ~~spdg~--~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~---~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t  229 (297)
T 3g4e_A          155 DWSLDHK--IFYYIDSLSYSVDAFDYDLQTGQISNRRSV---YKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT  229 (297)
T ss_dssp             EECTTSC--EEEEEEGGGTEEEEEEECTTTCCEEEEEEE---EECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred             EEcCCCC--EEEEecCCCCcEEEEeccCCCCcccCcEEE---EECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence            9999873  245667778999999974  333211 111   12233445688999999998888887788899999986


Q ss_pred             CCCcccccccccccceeEEEEc-CCCCEEEEEE
Q 009203          499 SANKPSQSIRAHQKRVFKAVWH-YSHPLLISIS  530 (540)
Q Consensus       499 ~~~~~~~~~~~h~~~i~~l~~s-~~~~~l~s~~  530 (540)
                        ++.+..+..+...+++++|. |+++.|..++
T Consensus       230 --G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          230 --GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             --CCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             --ceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence              67777777776789999998 8887665444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.49  E-value=8.6e-12  Score=118.64  Aligned_cols=281  Identities=9%  Similarity=-0.047  Sum_probs=172.8

Q ss_pred             EEecCCCcEEEEEeC-----CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec------CCC
Q 009203          230 SLNPVNEQLFVTSAL-----DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA------DSG  298 (540)
Q Consensus       230 ~~spd~~~~l~tg~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~------~~~  298 (540)
                      ...|| ++.+.....     ++.|.+.|..+.+.+.++...       . .+ . ++++|||++++++...      |..
T Consensus        39 ~~~pd-~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG-------~-~P-~-va~spDG~~lyVan~~~~r~~~G~~  107 (386)
T 3sjl_D           39 APAPD-ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-------F-LP-N-PVVADDGSFIAHASTVFSRIARGER  107 (386)
T ss_dssp             CCCCC-TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-------S-SC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred             ccCCC-CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC-------C-CC-c-EEECCCCCEEEEEcccccccccCCC
Confidence            34576 555555543     689999999998877666432       1 22 3 9999999998887210      013


Q ss_pred             CCeEEEEecCCCCCceeEEeecCC----CCcccceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccceeeccc
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDK----PHVKGIINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKALHRNL  372 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~  372 (540)
                      ++.|.+||..+.+   .+..+...    .........++|+| ++++++++..  ++.|.++|+.+++.+   ..+...+
T Consensus       108 ~~~VsviD~~t~~---v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv---~tI~v~g  180 (386)
T 3sjl_D          108 TDYVEVFDPVTLL---PTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFK---RMLDVPD  180 (386)
T ss_dssp             EEEEEEECTTTCC---EEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEE---EEEECCS
T ss_pred             CCEEEEEECCCCe---EEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEE---EEEECCC
Confidence            6789999999873   33333210    00112466899999 9998887763  689999999998752   2222111


Q ss_pred             CCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeec----cC-ccE-EEEeec-CCCCCceEEEEEcCCCeEEE
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQ----IE-SKC-MSVLPN-PCDFNLFMVQTGTPGRQLRL  444 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~----~~-~~~-~~~~~~-~~~~~~~~l~~~~~dg~v~i  444 (540)
                          + ...+....+.+++.+.||.+.+.++.. ++......    .. ..+ ....|. +++   .+++ .+.+|.|++
T Consensus       181 ----~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG---~~~~-vs~~g~V~v  251 (386)
T 3sjl_D          181 ----C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG---RLVW-PTYTGKIHQ  251 (386)
T ss_dssp             ----E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT---EEEE-EBTTSEEEE
T ss_pred             ----c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC---cEEE-EeCCCEEEE
Confidence                1 223333456677888889988888876 55422111    00 111 012232 333   3444 455799999


Q ss_pred             EECCCCcce-eeeeccccc----cCccccCeEEEEEcCCCCEEEEEeC----------CCcEEEEeccCCCCcccccccc
Q 009203          445 YDIRLRQTE-IHAFGWKQE----SSESQSALINQSWSPDGLYITSGSA----------DPVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       445 ~d~~~~~~~-~~~~~~~~~----~~~~~~~v~~~~~sp~g~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~  509 (540)
                      +|+.+.... ...+.....    ..-.......++++++++.++....          .+.|.++|+.+  .+.+..+..
T Consensus       252 ~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t--~kv~~~i~v  329 (386)
T 3sjl_D          252 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--GERLAKFEM  329 (386)
T ss_dssp             EECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT--CCEEEEEEE
T ss_pred             EECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC--CeEEEEEEC
Confidence            999765421 111110000    0001223345788999988877643          24688999987  777777763


Q ss_pred             cccceeEEEEcCCCC-EEEEE-EcCCcEEEEeC
Q 009203          510 HQKRVFKAVWHYSHP-LLISI-SSDLNIGLHKI  540 (540)
Q Consensus       510 h~~~i~~l~~s~~~~-~l~s~-~~dg~v~iw~l  540 (540)
                      - ..+++|++++|++ +|+++ ..++.|.++|.
T Consensus       330 g-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          330 G-HEIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             E-EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             C-CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            2 3689999999997 66665 45899999984

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.47  E-value=2.5e-11  Score=115.52  Aligned_cols=265  Identities=10%  Similarity=0.023  Sum_probs=161.4

Q ss_pred             EEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          228 SLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .++++|| |++|+++.          .++.|.+||..+.+...++....... .........++|+|||++|+++    .
T Consensus        82 ~va~spD-G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r-~~~g~~P~~~a~spDGk~lyVa----n  155 (386)
T 3sjl_D           82 NPVVADD-GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR-FLVGTYPWMTSLTPDGKTLLFY----Q  155 (386)
T ss_dssp             EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-CCBSCCGGGEEECTTSSEEEEE----E
T ss_pred             cEEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc-cccCCCCceEEEcCCCCEEEEE----E
Confidence            4999997 66665554          36789999999988776664321000 0011246689999999998887    4


Q ss_pred             --CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC-CCCccccceeecccCC
Q 009203          298 --GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD-AEDSWKPKALHRNLHS  374 (540)
Q Consensus       298 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~  374 (540)
                        .++.|.++|+.++   +.+..+..    .+ +  ..+.|.....+++.+.||.+.+.++.+ ++... ..........
T Consensus       156 ~~~~~~VsVID~~t~---~vv~tI~v----~g-~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~  224 (386)
T 3sjl_D          156 FSPAPAVGVVDLEGK---AFKRMLDV----PD-C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPED  224 (386)
T ss_dssp             CSSSCEEEEEETTTT---EEEEEEEC----CS-E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTT
T ss_pred             cCCCCeEEEEECCCC---cEEEEEEC----CC-c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEE-eecceecccc
Confidence              3689999999986   45555543    11 1  122342556777888899999999876 44210 0000000011


Q ss_pred             ccee-EEEec-cCCCEEEEEeCCCeEEEEECCCCCee--eeec--------c---CccEEEEeecCCCCCceEEEEEc--
Q 009203          375 SAVM-GVAGM-QQKQIVLSAGADKRIIGFDAGVGRAD--FKHQ--------I---ESKCMSVLPNPCDFNLFMVQTGT--  437 (540)
Q Consensus       375 ~~v~-~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~--------~---~~~~~~~~~~~~~~~~~~l~~~~--  437 (540)
                      ..+. ...|. ++|++++ .+.+|.|+++|+.++...  ....        .   ......+.+++++.. .|++...  
T Consensus       225 ~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~-lyV~~~~~~  302 (386)
T 3sjl_D          225 EFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR-IYLLVDQRD  302 (386)
T ss_dssp             SCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE-EEEEEEECC
T ss_pred             ccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe-EEEEecccc
Confidence            2222 24564 5675555 666899999999866532  1111        0   111123444665532 2332221  


Q ss_pred             ------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEE-eCCCcEEEEeccCCCCcccccccc
Q 009203          438 ------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSG-SADPVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       438 ------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~  509 (540)
                            ..+.|.++|+.+.+......        -...+.+++|++|++ +|++. ..++.|.++|..+  ++.+.++..
T Consensus       303 ~~~hk~~~~~V~viD~~t~kv~~~i~--------vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t--~k~~~~i~~  372 (386)
T 3sjl_D          303 EWRHKTASRFVVVLDAKTGERLAKFE--------MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES--GEELRSVNQ  372 (386)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEE--------EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTT--CCEEEEECC
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEE--------CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCC--CcEEEEecC
Confidence                  13579999999988644321        123678999999997 66654 5589999999998  777777763


Q ss_pred             cccceeEEEEcCC
Q 009203          510 HQKRVFKAVWHYS  522 (540)
Q Consensus       510 h~~~i~~l~~s~~  522 (540)
                      -. .-+.|.+++|
T Consensus       373 ~~-~p~~l~~s~d  384 (386)
T 3sjl_D          373 LG-HGPQVITTAD  384 (386)
T ss_dssp             CC-SSCCEEEECC
T ss_pred             CC-CCceeEECCc
Confidence            32 3456666665

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.46  E-value=2e-10  Score=110.77  Aligned_cols=248  Identities=10%  Similarity=-0.046  Sum_probs=154.3

Q ss_pred             EEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          228 SLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .++|+|| +++|+.+.          .++.|.+||..+.+...++....... ..+......++|+|||++|+++    .
T Consensus        70 ~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~-~~~g~~p~~~~~spDG~~l~v~----n  143 (373)
T 2mad_H           70 NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR-FDVGPYSWMNANTPNNADLLFF----Q  143 (373)
T ss_pred             CeEECCC-CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc-cccCCCccceEECCCCCEEEEE----e
Confidence            9999997 77777764          36789999998877655553220000 0011234579999999999987    4


Q ss_pred             C--CCeEEEEecCCCCCceeEEe-ecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC
Q 009203          298 G--DSQISVLNLNKTKGRACVTF-LDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       298 ~--d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                      .  ++.|.++| .++   +.+.. +..    .   .++.+.|+....+++.+.||.+.++|. +++..............
T Consensus       144 ~~~~~~v~viD-~t~---~~~~~~i~~----~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~  211 (373)
T 2mad_H          144 FAAGPAVGLVV-QGG---SSDDQLLSS----P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA  211 (373)
T ss_pred             cCCCCeEEEEE-CCC---CEEeEEcCC----C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence            3  57899999 876   33444 432    1   134556645567777888999999999 76642111000000011


Q ss_pred             cc-eeEEEeccCCCEEEEEeCCCeEEEEECCCCCee--eeecc-----------CccEEEEeecCCCCCceEEEEEc---
Q 009203          375 SA-VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD--FKHQI-----------ESKCMSVLPNPCDFNLFMVQTGT---  437 (540)
Q Consensus       375 ~~-v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~---  437 (540)
                      .+ .....+.+++..++..+..+.+.+.|+..+...  .....           ......+.++|++.   .+++..   
T Consensus       212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~---~lyV~~~~~  288 (373)
T 2mad_H          212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD---GIYLLTSEQ  288 (373)
T ss_pred             cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC---EEEEEeccC
Confidence            11 223456666666555567889999999765321  11110           11223356777663   333322   


Q ss_pred             -------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEeccCCCCccccc
Q 009203          438 -------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGS-ADPVIHLFDIRYSANKPSQS  506 (540)
Q Consensus       438 -------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~-~dg~i~iwd~~~~~~~~~~~  506 (540)
                             ..+.|.++|+.+.+......        ......+++|+|||+ .++++. .++.|.+||+.+  ++.+..
T Consensus       289 ~~~~~~~~~~~V~VID~~t~~vv~~i~--------~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t--~~vv~~  356 (373)
T 2mad_H          289 SAWKLHAAAKEVTSVTGLVGQTSSQIS--------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA--GDQDQS  356 (373)
T ss_pred             CcccccCCCCeEEEEECCCCEEEEEEE--------CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC--CCEEee
Confidence                   24689999999877543321        122578999999999 677776 589999999998  666655

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.45  E-value=8.3e-11  Score=115.10  Aligned_cols=248  Identities=8%  Similarity=-0.011  Sum_probs=162.3

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC--
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS--  300 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~--  300 (540)
                      -.....|+|+|+ ++++++...++.|++||..++...... ..        ..... ++|+++++.|+++    ..++  
T Consensus       130 ~~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~-~~--------~~~~~-ia~~~~g~~l~~~----d~~~~~  194 (409)
T 3hrp_A          130 FKYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVH-PG--------FKGGK-PAVTKDKQRVYSI----GWEGTH  194 (409)
T ss_dssp             CCCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEE-ET--------CCBCB-CEECTTSSEEEEE----BSSTTC
T ss_pred             cCCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEee-cc--------CCCCc-eeEecCCCcEEEE----ecCCCc
Confidence            357899999995 888888888899999999876543222 11        12233 9999999988887    5544  


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee---cccCCcce
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH---RNLHSSAV  377 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v  377 (540)
                      .|.+|+...+.....+..+..  .....+.+++++| ++..|+.+..++.|+.||..++..    ..+.   ..++...-
T Consensus       195 ~I~~~d~~~~~~~~~~g~~~~--~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~----~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          195 TVYVYMKASGWAPTRIGQLGS--TFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEV----TLIKQLELSGSLGTN  267 (409)
T ss_dssp             EEEEEEGGGTTCEEEEEECCT--TSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCE----EEEEECCCCSCCCCS
T ss_pred             eEEEEEcCCCceeEEeeeccc--hhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCE----EEEecccccCCCCCC
Confidence            799998876532111111111  1234578899999 545555577788999999987652    2220   11122222


Q ss_pred             -e-EEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeecc---------------CccEEEEeecCCCCCceEEEEEc-C
Q 009203          378 -M-GVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQI---------------ESKCMSVLPNPCDFNLFMVQTGT-P  438 (540)
Q Consensus       378 -~-~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~-~  438 (540)
                       . .++|+|+ +.++++...++.|+.||.... .......               -.....+++++++   .++++-. .
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG---~lyvad~~~  343 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG---NFYIVDGFK  343 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC---CEEEEETTT
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC---CEEEEeCCC
Confidence             3 9999995 666666667889999998743 2211111               1346789999987   5777777 8


Q ss_pred             CCeEEEEECCCCcceeeeeccccc--------cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          439 GRQLRLYDIRLRQTEIHAFGWKQE--------SSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       439 dg~v~i~d~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      ++.|+.||+.++.. ....+....        ....-..+..++++++|.++++-..++.|+.++++
T Consensus       344 ~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          344 GYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            89999999776552 211111000        00112468999999999888888888999888753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=3e-11  Score=117.12  Aligned_cols=266  Identities=8%  Similarity=-0.058  Sum_probs=164.7

Q ss_pred             ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec------CCCCCeEEEEecCCCCCceeEEee
Q 009203          246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA------DSGDSQISVLNLNKTKGRACVTFL  319 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~------~~~d~~i~vwd~~~~~~~~~~~~~  319 (540)
                      +.|.++|..+.+.+.++....        .+  .++++|||++|+++...      |..++.|.++|..+.+.   +..+
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~--------~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v---v~~I  165 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGF--------LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP---IADI  165 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECS--------SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE---EEEE
T ss_pred             CeEEEEECCCCEEEEEEECCC--------CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE---EEEE
Confidence            799999999988777765321        23  79999999999887210      01467899999998733   3333


Q ss_pred             cCC--CC--cccceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCC-CEEEEE
Q 009203          320 DDK--PH--VKGIINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSA  392 (540)
Q Consensus       320 ~~~--~~--~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~  392 (540)
                      ...  ..  .......+.|+| ++++++++..  ++.|.+.|+.+.+.+   ..+...   + .  ....|++ ..+++.
T Consensus       166 ~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv---~~I~v~---g-~--~~~~p~g~~~~v~~  235 (426)
T 3c75_H          166 ELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFD---RMLDVP---D-C--YHIFPASPTVFYMN  235 (426)
T ss_dssp             EETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEE---EEEECC---S-E--EEEEEEETTEEEEE
T ss_pred             ECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEE---EEEEcC---C-c--eeeccCCCcEEEEE
Confidence            210  00  012356789999 9999888764  578999999998752   222211   1 1  2223332 555666


Q ss_pred             eCCCeEEEEECCCCCeeee----eccCcc--EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee-eeeccc--c--
Q 009203          393 GADKRIIGFDAGVGRADFK----HQIESK--CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI-HAFGWK--Q--  461 (540)
Q Consensus       393 ~~dg~i~iwd~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~--~--  461 (540)
                      +.||.+.+.+..+++....    +.....  ...+.+.+++   ..++..+..+.|.+.|+....... ..+...  .  
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg---~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i  312 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRS---GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER  312 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTT---CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCC---CEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence            7778877777755554321    111111  1123345554   233334567899999987544221 111000  0  


Q ss_pred             ccCccccCeEEEEEcCCCCEEEEEeC----------CCcEEEEeccCCCCcccccccccccceeEEEEcCCCC-EEEEEE
Q 009203          462 ESSESQSALINQSWSPDGLYITSGSA----------DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-LLISIS  530 (540)
Q Consensus       462 ~~~~~~~~v~~~~~sp~g~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~  530 (540)
                      ...........++++|+++.+++...          ++.|.++|+.+  .+.+.++.... ..++++|+|||+ +++++.
T Consensus       313 ~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T--~kvv~~I~vg~-~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          313 ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET--GERINKIELGH-EIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT--CCEEEEEEEEE-EECEEEECCSSSCEEEEEE
T ss_pred             ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC--CeEEEEEECCC-CcCeEEEccCCCEEEEEEc
Confidence            00001112223689999987776542          35799999998  77787776332 589999999999 888888


Q ss_pred             -cCCcEEEEeC
Q 009203          531 -SDLNIGLHKI  540 (540)
Q Consensus       531 -~dg~v~iw~l  540 (540)
                       .++.|.|+|+
T Consensus       390 ~~s~~VsVID~  400 (426)
T 3c75_H          390 AGTQTLHIYDA  400 (426)
T ss_dssp             TTTTEEEEEET
T ss_pred             CCCCeEEEEEC
Confidence             5899999985

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.42  E-value=4.7e-11  Score=112.31  Aligned_cols=230  Identities=10%  Similarity=0.026  Sum_probs=151.5

Q ss_pred             CceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          276 WPEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       276 ~V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      ......|+++|+ ++++.    ..++.|..|+.. +.    ...+..   ....+.++++++ +++++++...++.|.+|
T Consensus        46 ~~egp~~~~~g~~l~~~d----~~~~~i~~~~~~-g~----~~~~~~---~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSD----LVGRRVLGWRED-GT----VDVLLD---ATAFTNGNAVDA-QQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEE----TTTTEEEEEETT-SC----EEEEEE---SCSCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred             CccCCeEeCCCCEEEEEE----CCCCEEEEEeCC-CC----EEEEeC---CCCccceeeECC-CCCEEEEECCCCEEEEE
Confidence            356799999998 55666    788999999884 32    222221   235689999999 88877666666889999


Q ss_pred             ecCCCCCccccceeec--c-cCCcceeEEEeccCCCEEEE----EeC-------------CCeEEEEECCCCCeeeeecc
Q 009203          355 SERDAEDSWKPKALHR--N-LHSSAVMGVAGMQQKQIVLS----AGA-------------DKRIIGFDAGVGRADFKHQI  414 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~--~-~~~~~v~~l~~s~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~  414 (540)
                      +.. +..    ..+..  . .....+.+++++++|+++++    |..             .+.|..||..+++..... .
T Consensus       113 ~~~-g~~----~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~  186 (305)
T 3dr2_A          113 DAD-GQA----HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D  186 (305)
T ss_dssp             CTT-SCE----EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E
T ss_pred             CCC-CCE----EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c
Confidence            986 442    22211  1 11245778999999998886    332             256888888777654433 3


Q ss_pred             CccEEEEeecCCCCCceEEEEEcCC------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC
Q 009203          415 ESKCMSVLPNPCDFNLFMVQTGTPG------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD  488 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~~~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d  488 (540)
                      ......++++|++   ..|+.+...      +.|.+||+.... ......+   .......+..++++++|++.++ +.+
T Consensus       187 ~~~p~gl~~spdg---~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~---~~~~~~~pdgi~~d~~G~lwv~-~~~  258 (305)
T 3dr2_A          187 LDHPNGLAFSPDE---QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHF---ASVPDGLPDGFCVDRGGWLWSS-SGT  258 (305)
T ss_dssp             ESSEEEEEECTTS---SEEEEEECCC---CCCEEEEEEEETTE-EEEEEEE---ECCSSSCCCSEEECTTSCEEEC-CSS
T ss_pred             CCCCcceEEcCCC---CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEE---EECCCCCCCeEEECCCCCEEEe-cCC
Confidence            3456788999987   445555443      789999987544 1110000   0112234567899999995444 455


Q ss_pred             CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEE
Q 009203          489 PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGL  537 (540)
Q Consensus       489 g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~i  537 (540)
                      | |.+|+..   ++.+..+..+. .+.+++|+++++.|..++.++..++
T Consensus       259 g-v~~~~~~---g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          259 G-VCVFDSD---GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             E-EEEECTT---SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             c-EEEECCC---CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            5 9999985   56666666554 5899999999988888877654443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.41  E-value=2.7e-10  Score=108.09  Aligned_cols=225  Identities=10%  Similarity=0.011  Sum_probs=147.5

Q ss_pred             eeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEec
Q 009203          278 EDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSE  356 (540)
Q Consensus       278 ~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  356 (540)
                      .+.+|+|++. ++++.    ..++.|..||..++   .. ..+..    ...+.+++|+| ++.++++. . ..|.+||.
T Consensus        52 egp~~~~~~~~l~~~d----~~~~~i~~~d~~~~---~~-~~~~~----~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~  116 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFN----ILERELHELHLASG---RK-TVHAL----PFMGSALAKIS-DSKQLIAS-D-DGLFLRDT  116 (326)
T ss_dssp             EEEEEETTTTEEEEEE----GGGTEEEEEETTTT---EE-EEEEC----SSCEEEEEEEE-TTEEEEEE-T-TEEEEEET
T ss_pred             cCCeEeCCCCEEEEEE----CCCCEEEEEECCCC---cE-EEEEC----CCcceEEEEeC-CCeEEEEE-C-CCEEEEEC
Confidence            4689999755 45555    67889999999865   22 22221    24689999999 88777654 4 44999999


Q ss_pred             CCCCCccccceeecc---cCCcceeEEEeccCCCEEEEEeC------CCeEEEEECCCCCeeeeeccCccEEEEeecCCC
Q 009203          357 RDAEDSWKPKALHRN---LHSSAVMGVAGMQQKQIVLSAGA------DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCD  427 (540)
Q Consensus       357 ~~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  427 (540)
                      .+++.    ..+...   .....+.+++++|+|+++++...      .+.|..+|  +++.............++++|++
T Consensus       117 ~~g~~----~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg  190 (326)
T 2ghs_A          117 ATGVL----TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDG  190 (326)
T ss_dssp             TTCCE----EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTS
T ss_pred             CCCcE----EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCC
Confidence            87763    222111   12346889999999997765542      25677777  45443222222345688899887


Q ss_pred             CCceEEEEEcCCCeEEEEECC--CC-ccee-eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcc
Q 009203          428 FNLFMVQTGTPGRQLRLYDIR--LR-QTEI-HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKP  503 (540)
Q Consensus       428 ~~~~~l~~~~~dg~v~i~d~~--~~-~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~  503 (540)
                      .  .++++.+.++.|.+||+.  ++ .... ..+   ..+......+.+++++++|.+.++...++.|.+||..   ++.
T Consensus       191 ~--~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~---~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~---g~~  262 (326)
T 2ghs_A          191 T--TGYFVDTKVNRLMRVPLDARTGLPTGKAEVF---IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD---GNH  262 (326)
T ss_dssp             C--EEEEEETTTCEEEEEEBCTTTCCBSSCCEEE---EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT---CCE
T ss_pred             C--EEEEEECCCCEEEEEEcccccCCcccCceEE---EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC---CCE
Confidence            2  234555667899999986  44 2110 111   0112233457889999999888777677889999984   566


Q ss_pred             cccccccccceeEEEEc-CCCCEEEEEEc
Q 009203          504 SQSIRAHQKRVFKAVWH-YSHPLLISISS  531 (540)
Q Consensus       504 ~~~~~~h~~~i~~l~~s-~~~~~l~s~~~  531 (540)
                      +..+..+...+++++|+ +++..|+.++.
T Consensus       263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          263 IARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            66666666679999998 88876655443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=1.5e-11  Score=117.79  Aligned_cols=277  Identities=9%  Similarity=-0.029  Sum_probs=168.1

Q ss_pred             CceEEEEEecCCCcEEEEEe--CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC---
Q 009203          224 RKLRSLSLNPVNEQLFVTSA--LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG---  298 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~---  298 (540)
                      ..+..|+++|+ |+++++..  .++.++||.+.+++ +..+.. ......+|...+.+++|+++|+++++-    ..   
T Consensus        17 ~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~-~~~~~~~~~~~p~gv~~d~~g~L~v~D----~g~~~   89 (343)
T 2qe8_A           17 LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELTQDG-LIPFPP-QSGNAIITFDTVLGIKSDGNGIVWMLD----NGNQS   89 (343)
T ss_dssp             SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEETTE-EEESCC-CCSSCCCCCSCEEEEEECSSSEEEEEE----CHHHH
T ss_pred             CCcceEEECCC-CCEEEEeCCCCCCceEEEEECCCC-eecCCC-cccCcccceeEeeEEEEcCCCcEEEEc----CCCCc
Confidence            67899999996 88888864  23436777776332 221111 011123567789999999998766654    33   


Q ss_pred             --CCeEEEEecCCCCCceeEEeecCC---CCcccceeEEEEeCCCCCEEEEEe---cCCcEEEEecCCCCCccccceeec
Q 009203          299 --DSQISVLNLNKTKGRACVTFLDDK---PHVKGIINSIIFLPWENPCFATGG---SDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       299 --d~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                        ++.|.+||+.++   ..+..+...   ..+...+..+++++.++..+++..   .++.|.+||+.+++.   ...+  
T Consensus        90 ~~~~~i~~~d~~tg---~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~---~r~~--  161 (343)
T 2qe8_A           90 KSVPKLVAWDTLNN---QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA---ARVL--  161 (343)
T ss_dssp             TSCCEEEEEETTTT---EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE---EEEC--
T ss_pred             CCCCeEEEEECCCC---eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE---EEEe--
Confidence              578999999876   333333221   112345789999983455556655   678999999987763   1111  


Q ss_pred             ccCCcce-eEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC-eEEEEECC
Q 009203          371 NLHSSAV-MGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR-QLRLYDIR  448 (540)
Q Consensus       371 ~~~~~~v-~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~  448 (540)
                      .+|.... ....+.++|..+.+.+.++.+..|..             ....++++|++   ..|+.+...+ .+..++..
T Consensus       162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-------------~~~gia~s~dg---~~ly~~~~~~~~l~~~~~~  225 (343)
T 2qe8_A          162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL-------------GVNGIVLDAEN---EWLYLSPMHSTSMYRIKSA  225 (343)
T ss_dssp             TTCTTTSCCSCCCEETTEECBEECTTSCEECCCC-------------CEEEEEECTTS---CEEEEEESSCSEEEEEEHH
T ss_pred             cCCCcccccccceeECCEEEEeccCCCceeceec-------------ccceeEeccCC---CEEEEEeCCCCeEEEEEHH
Confidence            1221111 01445567777777788888766642             34678899977   4566555544 55555532


Q ss_pred             C---CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCC
Q 009203          449 L---RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHP  524 (540)
Q Consensus       449 ~---~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~  524 (540)
                      .   ...............++......++++++|.++++...++.|.+||..+  ++....... +...+.+++|.++|.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~--G~~~~~~~~~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          226 DLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD--RAYKLLVTDEKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             HHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT--TEEEEEEECGGGSCEEEEEECTTSC
T ss_pred             HhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC--CCEEEEEECCceecCCeeEECCCCc
Confidence            1   1000000000000112334567899999999999998999999999843  332222211 244689999999999


Q ss_pred             EEEEEEcCC
Q 009203          525 LLISISSDL  533 (540)
Q Consensus       525 ~l~s~~~dg  533 (540)
                      ++++.+..+
T Consensus       304 l~v~~~~~~  312 (343)
T 2qe8_A          304 LYFDCNQLH  312 (343)
T ss_dssp             EEEEECCGG
T ss_pred             EEEEeCccc
Confidence            888876443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.40  E-value=6.3e-12  Score=120.10  Aligned_cols=175  Identities=10%  Similarity=0.021  Sum_probs=127.7

Q ss_pred             ceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-------ccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEE
Q 009203          328 IINSIIFLPWENPCFATGGSDHAVVLWSERDAED-------SWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIG  400 (540)
Q Consensus       328 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~i  400 (540)
                      .++.+++++ ...++++|+.++ +.+|++.....       .......  ..+.. |+.++|  ++.+|+++ .++.|++
T Consensus        39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~--~~lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE--KEIPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE--EECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE--eeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            589999999 888999999875 66798754320       0111111  12556 999999  89999998 8899999


Q ss_pred             EECCCCCeee-eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCC
Q 009203          401 FDAGVGRADF-KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG  479 (540)
Q Consensus       401 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g  479 (540)
                      ||+++..... .......+.++.+.+.     .+++++.||.|.+||+.++....           +...|++++|||+|
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p-----~~av~~~dG~L~v~dl~~~~~~~-----------~~~~Vs~v~WSpkG  174 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN-----TLVILNSVNDLSALDLRTKSTKQ-----------LAQNVTSFDVTNSQ  174 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS-----EEEEEETTSEEEEEETTTCCEEE-----------EEESEEEEEECSSE
T ss_pred             EEchhhhccCccceeecceeeEEecCC-----CEEEEECCCCEEEEEccCCcccc-----------ccCCceEEEEcCCc
Confidence            9998755422 2233445566666543     37888999999999999766421           34589999999999


Q ss_pred             CEEEEEeCCCcEEEEeccCCCCcc--cccc------c---ccccceeEEEEcCCCCEEEEEE
Q 009203          480 LYITSGSADPVIHLFDIRYSANKP--SQSI------R---AHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       480 ~~l~sg~~dg~i~iwd~~~~~~~~--~~~~------~---~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                        ++.|..||.+++|+...  ...  ..++      .   +|...|.+|.|.+++.+|++=+
T Consensus       175 --~~vg~~dg~i~~~~~~~--~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          175 --LAVLLKDRSFQSFAWRN--GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             --EEEEETTSCEEEEEEET--TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             --eEEEEcCCcEEEEcCCC--ccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence              77899999999998886  232  3333      2   3678899999999998887643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=4.7e-10  Score=104.97  Aligned_cols=233  Identities=12%  Similarity=0.060  Sum_probs=149.9

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      .+..-..+..|+|+++.++++...++.|..||..++.. ..+         .....+.+++++++|+++++.      ++
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~---------~~~~~~~~i~~~~dG~l~v~~------~~   73 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV---------TMDAPVSSVALRQSGGYVATI------GT   73 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE---------ECSSCEEEEEEBTTSSEEEEE------TT
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE---------eCCCceEEEEECCCCCEEEEE------CC
Confidence            34445678999997678888888899999999987653 122         123458899999999955543      56


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC---------CcEEEEecCCCCCccccceeecc
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD---------HAVVLWSERDAEDSWKPKALHRN  371 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~  371 (540)
                      .|.+||..++.. ..+..... ......+..++++| +++++++...+         ..-.+|.+.....   ...+.  
T Consensus        74 ~l~~~d~~~g~~-~~~~~~~~-~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~---~~~~~--  145 (297)
T 3g4e_A           74 KFCALNWKEQSA-VVLATVDN-DKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHH---VKKYF--  145 (297)
T ss_dssp             EEEEEETTTTEE-EEEEECCT-TCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC---EEEEE--
T ss_pred             eEEEEECCCCcE-EEEEecCC-CCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCC---EEEEe--
Confidence            899999987521 11111111 11124588999999 88877654322         2234555443221   12221  


Q ss_pred             cCCcceeEEEeccCCCEEEE-EeCCCeEEEEEC--CCCCee-----eee-ccCccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203          372 LHSSAVMGVAGMQQKQIVLS-AGADKRIIGFDA--GVGRAD-----FKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQL  442 (540)
Q Consensus       372 ~~~~~v~~l~~s~~~~~l~~-~~~dg~i~iwd~--~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v  442 (540)
                      ......+.++|+|+++.|+. .+.++.|.+||+  .++...     ... ........+++++++   .+.++...++.|
T Consensus       146 ~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G---~lwva~~~~~~v  222 (297)
T 3g4e_A          146 DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG---KLWVACYNGGRV  222 (297)
T ss_dssp             EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS---CEEEEEETTTEE
T ss_pred             eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC---CEEEEEcCCCEE
Confidence            13345689999999987654 555789999987  455431     111 123456788888877   566777777899


Q ss_pred             EEEECCCCcceeeeeccccccCccccCeEEEEEc-CCCCEEEEEeC
Q 009203          443 RLYDIRLRQTEIHAFGWKQESSESQSALINQSWS-PDGLYITSGSA  487 (540)
Q Consensus       443 ~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~sg~~  487 (540)
                      .+||..+++.....       ..+...+++++|. |+++.|+.++.
T Consensus       223 ~~~d~~tG~~~~~i-------~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          223 IRLDPVTGKRLQTV-------KLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEECTTTCCEEEEE-------ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEcCCCceEEEEE-------ECCCCCceEEEEeCCCCCEEEEEcC
Confidence            99999877643321       2233578999998 88877665543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.39  E-value=4.2e-11  Score=125.99  Aligned_cols=254  Identities=10%  Similarity=0.058  Sum_probs=156.1

Q ss_pred             EEeccchhcccccCceEEEEEecCCCcEEEEE-----eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC
Q 009203          211 HCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTS-----ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ  285 (540)
Q Consensus       211 ~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg-----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  285 (540)
                      .+.|.+..-.+|...+..++|||| |++||.+     +.+..|++||+.+++........         .....++|+ |
T Consensus       116 vllD~n~la~~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~---------~k~~~~~Ws-D  184 (693)
T 3iuj_A          116 VFLDPNTLSPDGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD---------VKFSGISWL-G  184 (693)
T ss_dssp             EEECGGGGSTTSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE---------EESCCCEEE-T
T ss_pred             EEEehhhccCCCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCCccccCC---------ceeccEEEe-C
Confidence            345666555678888999999997 7777743     33367999999998743321110         012468999 9


Q ss_pred             CCeEEEEeecCCCC-------------CeEEEEecCCCCCceeEEeecCCCC-cccceeEEEEeCCCCCEEEEEec----
Q 009203          286 GNSLFSAHTADSGD-------------SQISVLNLNKTKGRACVTFLDDKPH-VKGIINSIIFLPWENPCFATGGS----  347 (540)
Q Consensus       286 ~~~l~s~~~~~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~~----  347 (540)
                      |+.|+.+    +.+             ..|++|++.++... ....+.. .. +...+.++.|+| ++++|+....    
T Consensus       185 g~~l~y~----~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-~~~v~~~-~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~  257 (693)
T 3iuj_A          185 NEGFFYS----SYDKPDGSELSARTDQHKVYFHRLGTAQED-DRLVFGA-IPAQHHRYVGATVTE-DDRFLLISAANSTS  257 (693)
T ss_dssp             TTEEEEE----ESSCCC-------CCCCEEEEEETTSCGGG-CEEEESC-SGGGCCSEEEEEECT-TSCEEEEEEESSSS
T ss_pred             CCEEEEE----EecCcccccccccCCCcEEEEEECCCCccc-ceEEEec-CCCCCeEEEEEEEcC-CCCEEEEEEccCCC
Confidence            9988887    444             45999999876332 1223332 11 234578899999 8888755432    


Q ss_pred             CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-C---CeEEEEECCCCCe---eeeeccCccEEE
Q 009203          348 DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-D---KRIIGFDAGVGRA---DFKHQIESKCMS  420 (540)
Q Consensus       348 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d---g~i~iwd~~~~~~---~~~~~~~~~~~~  420 (540)
                      +..|+++|+.++...  ...+.  .+....... |+++|..|+..+. +   +.|..+|+.++..   ........... 
T Consensus       258 ~~~i~~~d~~~~~~~--~~~l~--~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-  331 (693)
T 3iuj_A          258 GNRLYVKDLSQENAP--LLTVQ--GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-  331 (693)
T ss_dssp             CCEEEEEETTSTTCC--CEEEE--CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-
T ss_pred             CcEEEEEECCCCCCc--eEEEe--CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-
Confidence            248999999876421  23332  244444444 5666666555443 3   5799999988654   22222222333 


Q ss_pred             EeecCCCCCceEEEEEcCCC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC----CcEEEE
Q 009203          421 VLPNPCDFNLFMVQTGTPGR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD----PVIHLF  494 (540)
Q Consensus       421 ~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d----g~i~iw  494 (540)
                       .+++++.  .++++...++  .|++||+.......  +    .+ ...+.+..+.+++++..|+....+    +.|+.|
T Consensus       332 -~~s~~g~--~lv~~~~~~g~~~l~~~d~~g~~~~~--l----~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~  401 (693)
T 3iuj_A          332 -TVHSGSG--YLFAEYMVDATARVEQFDYEGKRVRE--V----AL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRF  401 (693)
T ss_dssp             -EEEEETT--EEEEEEEETTEEEEEEECTTSCEEEE--E----CC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEE
T ss_pred             -EEEEECC--EEEEEEEECCeeEEEEEECCCCeeEE--e----ec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEE
Confidence             5555542  2444444454  68899987543211  1    11 233457778888888877665444    789999


Q ss_pred             eccC
Q 009203          495 DIRY  498 (540)
Q Consensus       495 d~~~  498 (540)
                      |+.+
T Consensus       402 d~~~  405 (693)
T 3iuj_A          402 EPKS  405 (693)
T ss_dssp             CTTT
T ss_pred             ECCC
Confidence            9876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.34  E-value=1.9e-09  Score=102.24  Aligned_cols=224  Identities=10%  Similarity=0.027  Sum_probs=143.1

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      -..+.+|+|+++.+++++..++.|.+||..++.. ..+.         ....+.+++|+++|+++++.     .+ .|.+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~---------~~~~v~~i~~~~dg~l~v~~-----~~-gl~~  113 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHA---------LPFMGSALAKISDSKQLIAS-----DD-GLFL  113 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEE---------CSSCEEEEEEEETTEEEEEE-----TT-EEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEE---------CCCcceEEEEeCCCeEEEEE-----CC-CEEE
Confidence            4577899997677888888889999999987542 1111         12458899999999877764     33 4999


Q ss_pred             EecCCCCCceeEEeecCC-CCcccceeEEEEeCCCCCEEEEEec------CCcEEEEecCCCCCccccceeecccCCcce
Q 009203          305 LNLNKTKGRACVTFLDDK-PHVKGIINSIIFLPWENPCFATGGS------DHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      ||..++..   ....... ......+.+++++| ++.++++...      .+.|..++  +++    ...+.  .+....
T Consensus       114 ~d~~~g~~---~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~----~~~~~--~~~~~~  181 (326)
T 2ghs_A          114 RDTATGVL---TLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGK----VTKLF--ADISIP  181 (326)
T ss_dssp             EETTTCCE---EEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTE----EEEEE--EEESSE
T ss_pred             EECCCCcE---EEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCc----EEEee--CCCccc
Confidence            99887632   2221111 11124588999999 8887765542      24555555  343    22221  123456


Q ss_pred             eEEEeccCCCEEEEE-eCCCeEEEEECC--CC-Ce----ee-eec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEEC
Q 009203          378 MGVAGMQQKQIVLSA-GADKRIIGFDAG--VG-RA----DF-KHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDI  447 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~-~~dg~i~iwd~~--~~-~~----~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~  447 (540)
                      ..++|+|+|+.++.+ +.++.|.+||+.  ++ ..    .. ... .......+.+++++   .++++...++.|.+||.
T Consensus       182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G---~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG---HIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS---CEEEEEETTTEEEEECT
T ss_pred             CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC---CEEEEEeCCCEEEEECC
Confidence            789999999876555 457899999986  55 32    11 111 23445678888876   45666656789999998


Q ss_pred             CCCcceeeeeccccccCccccCeEEEEEc-CCCCEEEEEeC
Q 009203          448 RLRQTEIHAFGWKQESSESQSALINQSWS-PDGLYITSGSA  487 (540)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~sg~~  487 (540)
                      . ++. ...+      ..+...+++++|+ ++++.|++++.
T Consensus       259 ~-g~~-~~~i------~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          259 D-GNH-IARY------EVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             T-CCE-EEEE------ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             C-CCE-EEEE------ECCCCCcEEEEEecCCCCEEEEEec
Confidence            4 332 2222      1233468999998 88877655543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.34  E-value=3.8e-10  Score=118.65  Aligned_cols=245  Identities=12%  Similarity=0.043  Sum_probs=150.3

Q ss_pred             CCCCCceeEEEecCCCeEEEEeec-CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-
Q 009203          272 KHRRWPEDIAWHPQGNSLFSAHTA-DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-  349 (540)
Q Consensus       272 ~h~~~V~~~~~~~~~~~l~s~~~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-  349 (540)
                      +|...+..++|||||++||.+... |+....|++||+.+++.  ....+..     .....++|+  |++.|+.++.+. 
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~--~~~~~~~-----~k~~~~~Ws--Dg~~l~y~~~~~~  196 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP--LETPLKD-----VKFSGISWL--GNEGFFYSSYDKP  196 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE--EEEEEEE-----EESCCCEEE--TTTEEEEEESSCC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC--CccccCC-----ceeccEEEe--CCCEEEEEEecCc
Confidence            455668889999999998876433 23447899999998732  1112211     113577899  677777777664 


Q ss_pred             ------------cEEEEecCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeC----CCeEEEEECCCCC--eee
Q 009203          350 ------------AVVLWSERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGA----DKRIIGFDAGVGR--ADF  410 (540)
Q Consensus       350 ------------~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~--~~~  410 (540)
                                  .|++|++.++.... ........ |...+.++.|+|||++|+....    +..|+++|+.++.  ...
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~~~~-~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQEDD-RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             C-------CCCCEEEEEETTSCGGGC-EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred             ccccccccCCCcEEEEEECCCCcccc-eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence                        39999998765210 11222222 3445788999999998865443    3489999998763  222


Q ss_pred             eeccCccEEEEeecCCCCCceEEEEEcC---CCeEEEEECCCCcce-eeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203          411 KHQIESKCMSVLPNPCDFNLFMVQTGTP---GRQLRLYDIRLRQTE-IHAFGWKQESSESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                      ........... +++++.  .+++....   .+.|..+|+.++... ..      .+..|...+.  .|++++++|+...
T Consensus       276 l~~~~~~~~~~-~~~~g~--~l~~~t~~~~~~~~l~~~d~~~~~~~~~~------~l~~~~~~~~--~~s~~g~~lv~~~  344 (693)
T 3iuj_A          276 VQGDLDADVSL-VDNKGS--TLYLLTNRDAPNRRLVTVDAANPGPAHWR------DLIPERQQVL--TVHSGSGYLFAEY  344 (693)
T ss_dssp             EECSSSSCEEE-EEEETT--EEEEEECTTCTTCEEEEEETTSCCGGGCE------EEECCCSSCE--EEEEETTEEEEEE
T ss_pred             EeCCCCceEEE-EeccCC--EEEEEECCCCCCCEEEEEeCCCCCccccE------EEecCCCCEE--EEEEECCEEEEEE
Confidence            22222222222 333332  34445444   368999999876531 11      1223444444  8899999887665


Q ss_pred             CC-C--cEEEEeccCCCCccccccc-ccccceeEEEEcCCCCEEEEEEcC----CcEEEEeC
Q 009203          487 AD-P--VIHLFDIRYSANKPSQSIR-AHQKRVFKAVWHYSHPLLISISSD----LNIGLHKI  540 (540)
Q Consensus       487 ~d-g--~i~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~~~~~l~s~~~d----g~v~iw~l  540 (540)
                      .+ +  .|++|++..   .....+. ...+.+..+.+++++..|+....+    +.|..||+
T Consensus       345 ~~~g~~~l~~~d~~g---~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          345 MVDATARVEQFDYEG---KRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             EETTEEEEEEECTTS---CEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EECCeeEEEEEECCC---CeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            44 3  688888874   2333332 234567788888888766655444    77888774

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.34  E-value=1.5e-10  Score=108.80  Aligned_cols=228  Identities=11%  Similarity=0.056  Sum_probs=145.0

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      .....+..|+|++..+++++..++.|..|+.. ++ ...+.        .+...+..++++++|+++++.    ..++.|
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~--------~~~~~~~gl~~d~dG~l~v~~----~~~~~v  109 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLL--------DATAFTNGNAVDAQQRLVHCE----HGRRAI  109 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEE--------ESCSCEEEEEECTTSCEEEEE----TTTTEE
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEe--------CCCCccceeeECCCCCEEEEE----CCCCEE
Confidence            35678899999743478888888999999873 33 22221        223457899999999977776    667899


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEE----Eec-------------CCcEEEEecCCCCCcccc
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFAT----GGS-------------DHAVVLWSERDAEDSWKP  365 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~  365 (540)
                      .+|+.. +...........  .....+.++++.| ++.++++    |..             .+.|..||..+++.    
T Consensus       110 ~~~~~~-g~~~~~~~~~~~--~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~----  181 (305)
T 3dr2_A          110 TRSDAD-GQAHLLVGRYAG--KRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL----  181 (305)
T ss_dssp             EEECTT-SCEEEEECEETT--EECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC----
T ss_pred             EEECCC-CCEEEEEeccCC--CccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE----
Confidence            999986 421111111111  1123477899999 9988886    332             24677788766653    


Q ss_pred             ceeecccCCcceeEEEeccCCCEEEEEeCC------CeEEEEECCCCCe----eeeeccCccEEEEeecCCCCCceEEEE
Q 009203          366 KALHRNLHSSAVMGVAGMQQKQIVLSAGAD------KRIIGFDAGVGRA----DFKHQIESKCMSVLPNPCDFNLFMVQT  435 (540)
Q Consensus       366 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~  435 (540)
                      ..+.   .......++|+|+++.|+.+...      +.|.+||+..+..    ............+.+++++   . |.+
T Consensus       182 ~~~~---~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G---~-lwv  254 (305)
T 3dr2_A          182 QRMA---DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGG---W-LWS  254 (305)
T ss_dssp             EEEE---EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTS---C-EEE
T ss_pred             EEEe---cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCC---C-EEE
Confidence            2221   23456789999999988777665      6899999875431    1111112233456677766   3 444


Q ss_pred             EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC
Q 009203          436 GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP  489 (540)
Q Consensus       436 ~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg  489 (540)
                      +.. +.|.+||... +. ...+.      ... .+.+++|+++++.|+.++.++
T Consensus       255 ~~~-~gv~~~~~~g-~~-~~~~~------~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          255 SSG-TGVCVFDSDG-QL-LGHIP------TPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             CCS-SEEEEECTTS-CE-EEEEE------CSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             ecC-CcEEEECCCC-CE-EEEEE------CCC-ceeEEEEeCCCCEEEEEcCCe
Confidence            444 4599999853 32 22211      112 478899999999888887765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.32  E-value=5.9e-10  Score=108.06  Aligned_cols=250  Identities=11%  Similarity=0.022  Sum_probs=157.0

Q ss_pred             EEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          228 SLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .++++|| +++|+++.          .++.|.++|..+.+...++....... .........++|+|||++|+++    .
T Consensus       122 gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r-~~~g~~P~~~~~spDGk~lyV~----n  195 (426)
T 3c75_H          122 HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR-FLVGTYQWMNALTPDNKNLLFY----Q  195 (426)
T ss_dssp             EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-CCBSCCGGGSEECTTSSEEEEE----E
T ss_pred             ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc-cccCCCcceEEEcCCCCEEEEE----e
Confidence            8999997 66555554          46789999999988776664320000 0011335689999999999987    4


Q ss_pred             C--CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccc-ceeecccCC
Q 009203          298 G--DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKP-KALHRNLHS  374 (540)
Q Consensus       298 ~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~  374 (540)
                      .  ++.|.+.|+.+.   +.+..+..    .+ .  ....|.....+++.+.||.+.+.+..+++..... ..+.  ...
T Consensus       196 ~~~~~~VsVID~~t~---kvv~~I~v----~g-~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~--v~~  263 (426)
T 3c75_H          196 FSPAPAVGVVDLEGK---TFDRMLDV----PD-C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH--TED  263 (426)
T ss_dssp             CSSSCEEEEEETTTT---EEEEEEEC----CS-E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS--CTT
T ss_pred             cCCCCeEEEEECCCC---eEEEEEEc----CC-c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec--cCC
Confidence            3  688999999986   44555543    11 1  2333423456677777888888888554421100 0010  011


Q ss_pred             cc-eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee--ecc-----------CccEEEEeecCCCCCceEEEEEc---
Q 009203          375 SA-VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK--HQI-----------ESKCMSVLPNPCDFNLFMVQTGT---  437 (540)
Q Consensus       375 ~~-v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~l~~~~---  437 (540)
                      .+ ...+.|.+++..++..+..+.+.+.|...+.....  ...           ......+.++|++.  +++++..   
T Consensus       264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~--rlyVa~~~~~  341 (426)
T 3c75_H          264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD--RIYLLVDQRD  341 (426)
T ss_dssp             SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT--EEEEEEEECC
T ss_pred             CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC--EEEEEecccc
Confidence            11 12456788988888888889999999976543211  100           01111246677653  2333322   


Q ss_pred             ------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC-EEEEEe-CCCcEEEEeccCCCCcccccc
Q 009203          438 ------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL-YITSGS-ADPVIHLFDIRYSANKPSQSI  507 (540)
Q Consensus       438 ------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~-~dg~i~iwd~~~~~~~~~~~~  507 (540)
                            .++.|.++|+.+.+......        -.....++.|+|||+ ++++.. .++.|.++|+.+  .+.+.++
T Consensus       342 ~gthk~~s~~VsVID~~T~kvv~~I~--------vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t--~kvv~tI  409 (426)
T 3c75_H          342 EWKHKAASRFVVVLNAETGERINKIE--------LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT--GEELRSV  409 (426)
T ss_dssp             TTCTTSCEEEEEEEETTTCCEEEEEE--------EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTT--CCEEEEE
T ss_pred             cccccCCCCEEEEEECCCCeEEEEEE--------CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC--CCEEEEe
Confidence                  23579999999887544321        112578999999999 888777 589999999998  6777775

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.26  E-value=1.9e-10  Score=109.93  Aligned_cols=181  Identities=8%  Similarity=0.066  Sum_probs=130.3

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCC--------CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTK--------GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS  347 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  347 (540)
                      .++.+++++...++++|    +.+ .+.+|++....        .........    +.. |..++|   ++.+|+++ .
T Consensus        39 ~~nlLais~~~gll~a~----~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~----lp~-V~~l~f---d~~~L~v~-~  104 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAA----SGS-KAVVGELQLLRDHITSDSTPLTFKWEKE----IPD-VIFVCF---HGDQVLVS-T  104 (388)
T ss_dssp             CCBCEEEETTTTEEEEE----ETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE----CTT-EEEEEE---ETTEEEEE-E
T ss_pred             cccEEEEcCCCCEEEEe----CCC-EEEEEEhhHhhhhhccccccccceEEee----CCC-eeEEEE---CCCEEEEE-c
Confidence            58899999999999998    666 56669876432        001111111    235 999999   67888888 8


Q ss_pred             CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCC
Q 009203          348 DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCD  427 (540)
Q Consensus       348 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  427 (540)
                      ++.|++||+.+...   ....  ..|...+.++.+.+.  .+++++.||.|.+||+.++....   ....+.+++|+|.+
T Consensus       105 ~~~l~v~dv~sl~~---~~~~--~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG  174 (388)
T 1xip_A          105 RNALYSLDLEELSE---FRTV--TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ  174 (388)
T ss_dssp             SSEEEEEESSSTTC---EEEE--EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE
T ss_pred             CCcEEEEEchhhhc---cCcc--ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc
Confidence            89999999987653   2222  236667888887653  38889999999999999877643   44678999999986


Q ss_pred             CCceEEEEEcCCCeEEEEECCCCcce-eeeeccccccC---ccccCeEEEEEcCCCCEEEEE
Q 009203          428 FNLFMVQTGTPGRQLRLYDIRLRQTE-IHAFGWKQESS---ESQSALINQSWSPDGLYITSG  485 (540)
Q Consensus       428 ~~~~~l~~~~~dg~v~i~d~~~~~~~-~~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~sg  485 (540)
                           ++.|..||++++|+....... ...+.....+.   +|...|.++.|.+++.++++-
T Consensus       175 -----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          175 -----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             -----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             -----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence                 577889999999988776631 22222111122   467889999999999998863

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.19  E-value=9.1e-09  Score=98.50  Aligned_cols=240  Identities=8%  Similarity=0.007  Sum_probs=148.0

Q ss_pred             EEe--cCCCeEEEEeecCCCCCeEEEEecCCC-CCceeEEeecC--C--CCcccceeEEEEeCCCCCEEEEEecC-----
Q 009203          281 AWH--PQGNSLFSAHTADSGDSQISVLNLNKT-KGRACVTFLDD--K--PHVKGIINSIIFLPWENPCFATGGSD-----  348 (540)
Q Consensus       281 ~~~--~~~~~l~s~~~~~~~d~~i~vwd~~~~-~~~~~~~~~~~--~--~~~~~~v~~~~~~p~~~~~l~s~~~d-----  348 (540)
                      .++  .++++|++.   +..++.|.++|+.+. ...+...+++.  .  .........+...| ++ +++++..+     
T Consensus        88 ~~~~~~~r~~l~v~---~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~  162 (462)
T 2ece_A           88 NGKPNIERRFLIVP---GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEG  162 (462)
T ss_dssp             TCCTTCCSCEEEEE---BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCS
T ss_pred             ccCCCccCCEEEEc---cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCC
Confidence            346  788877765   378899999999754 22344444420  0  00012355678889 88 77776555     


Q ss_pred             -CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-------------------CCCeEEEEECCCCCe
Q 009203          349 -HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-------------------ADKRIIGFDAGVGRA  408 (540)
Q Consensus       349 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-------------------~dg~i~iwd~~~~~~  408 (540)
                       |.|.++|..+.+.+.+...-  ......-+.+.|+|+++.+++..                   .+.+|.+||+.+++.
T Consensus       163 ~g~v~vlD~~T~~v~~~~~~~--~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~  240 (462)
T 2ece_A          163 PGGILMLDHYSFEPLGKWEID--RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR  240 (462)
T ss_dssp             CCEEEEECTTTCCEEEECCSB--CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred             CCeEEEEECCCCeEEEEEccC--CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence             78999999988753222210  11122345688899999888874                   367999999998877


Q ss_pred             eeeeccC---ccEEEE--eecCCCCCceEEEEE-c-----CCCeEEEEECCCCccee-eeeccc-----ccc-------C
Q 009203          409 DFKHQIE---SKCMSV--LPNPCDFNLFMVQTG-T-----PGRQLRLYDIRLRQTEI-HAFGWK-----QES-------S  464 (540)
Q Consensus       409 ~~~~~~~---~~~~~~--~~~~~~~~~~~l~~~-~-----~dg~v~i~d~~~~~~~~-~~~~~~-----~~~-------~  464 (540)
                      +.....+   .....+  .++|++   .+++++ .     .+++|.+|....+.-.. ..+...     ..+       .
T Consensus       241 ~~tI~vg~~g~~P~~i~f~~~Pdg---~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~  317 (462)
T 2ece_A          241 IHSLTLGEENRMALELRPLHDPTK---LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK  317 (462)
T ss_dssp             EEEEESCTTEEEEEEEEECSSTTC---CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred             eeEEecCCCCCccceeEeeECCCC---CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence            6665554   233344  458887   344443 3     56788877665432110 000000     000       0


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCC-CCcccccccccc--------------cceeEEEEcCCCCEEEE
Q 009203          465 ESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYS-ANKPSQSIRAHQ--------------KRVFKAVWHYSHPLLIS  528 (540)
Q Consensus       465 ~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~-~~~~~~~~~~h~--------------~~i~~l~~s~~~~~l~s  528 (540)
                      +-...+..|.+|+||++|.++.. .+.|.+||+... ..+.+..+....              +.-..++++|||++|++
T Consensus       318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyV  397 (462)
T 2ece_A          318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYV  397 (462)
T ss_dssp             EECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEE
T ss_pred             cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEE
Confidence            01245788999999999887764 689999999642 123333333210              13588999999999888


Q ss_pred             EE
Q 009203          529 IS  530 (540)
Q Consensus       529 ~~  530 (540)
                      +.
T Consensus       398 aN  399 (462)
T 2ece_A          398 TN  399 (462)
T ss_dssp             EC
T ss_pred             Ec
Confidence            87

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.18  E-value=1.6e-09  Score=112.90  Aligned_cols=275  Identities=10%  Similarity=0.017  Sum_probs=164.3

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC--CCCCeEEEEecCCCCCc
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD--SGDSQISVLNLNKTKGR  313 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~--~~d~~i~vwd~~~~~~~  313 (540)
                      +..|+.++.|+.|..+|..+++...++......   .....+.+.-.. .+..++++...+  +.++.|..||..+++..
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ---KGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERK  203 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTC---CSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCc---CcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence            346778888999999999999887776532010   000112111111 234555541000  02799999999998432


Q ss_pred             eeEEeecCCC--------------------------CcccceeEEEEeCCCCCEEEEEecCC------------------
Q 009203          314 ACVTFLDDKP--------------------------HVKGIINSIIFLPWENPCFATGGSDH------------------  349 (540)
Q Consensus       314 ~~~~~~~~~~--------------------------~~~~~v~~~~~~p~~~~~l~s~~~dg------------------  349 (540)
                      ..........                          ........++++| ++.+++.++.++                  
T Consensus       204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~  282 (677)
T 1kb0_A          204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYL  282 (677)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred             EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeee
Confidence            2222211100                          0001123578899 777888777654                  


Q ss_pred             -cEEEEecCCCCCccccceeeccc----CCcceeEEEeccCC---CEEEEEeCCCeEEEEECCCCCeeeeeccCc-----
Q 009203          350 -AVVLWSERDAEDSWKPKALHRNL----HSSAVMGVAGMQQK---QIVLSAGADKRIIGFDAGVGRADFKHQIES-----  416 (540)
Q Consensus       350 -~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----  416 (540)
                       .|..+|..+++..|..+......    ......-+....+|   ..++.++.+|.++++|..+|+.+.......     
T Consensus       283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~  362 (677)
T 1kb0_A          283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (677)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence             59999999999876655322110    01122223333467   688999999999999999999876543221     


Q ss_pred             ------cE-------------------------EEEeecCCCCCceEEEEEcC---------------------------
Q 009203          417 ------KC-------------------------MSVLPNPCDFNLFMVQTGTP---------------------------  438 (540)
Q Consensus       417 ------~~-------------------------~~~~~~~~~~~~~~l~~~~~---------------------------  438 (540)
                            ..                         ..++++|+.   .++++...                           
T Consensus       363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~---~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  439 (677)
T 1kb0_A          363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT---GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG  439 (677)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT---TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred             ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC---CEEEEeChhcceeeecccccccccccccccccccc
Confidence                  00                         023455554   24444321                           


Q ss_pred             ----------------CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc
Q 009203          439 ----------------GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK  502 (540)
Q Consensus       439 ----------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~  502 (540)
                                      .|.|..||+.+++......        +..++.+..+..++..+++++.||.+++||..+  ++
T Consensus       440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t--G~  509 (677)
T 1kb0_A          440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT--GE  509 (677)
T ss_dssp             CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT--CC
T ss_pred             cccccccccccCCCCCccEEEEEeCCCCcEEeecC--------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC--Cc
Confidence                            2789999999887544321        122344445666888999999999999999998  77


Q ss_pred             ccccccccc-cceeEEEEcCCCCEEEE
Q 009203          503 PSQSIRAHQ-KRVFKAVWHYSHPLLIS  528 (540)
Q Consensus       503 ~~~~~~~h~-~~i~~l~~s~~~~~l~s  528 (540)
                      .+..+.... ....-+.|..+|+.+++
T Consensus       510 ~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          510 KLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             eeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            777776332 23344667788864433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.18  E-value=1.4e-09  Score=103.58  Aligned_cols=268  Identities=9%  Similarity=-0.088  Sum_probs=160.1

Q ss_pred             cEEEEEeCCc----eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec------CCCCCeEEEEe
Q 009203          237 QLFVTSALDG----VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA------DSGDSQISVLN  306 (540)
Q Consensus       237 ~~l~tg~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~------~~~d~~i~vwd  306 (540)
                      ..+++-..++    +|.++|..+.+.+.++...       . .+  .++++||+++++++...      |..++.|.+||
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG-------~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD  102 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-------F-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD  102 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-------T-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCC-------C-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            3444444444    8889999998877776532       2 23  69999999999988210      11378999999


Q ss_pred             cCCCCCceeEEeecCC-CC---cccceeEEEEeCCCCCEEEEEec--CCcEEE--EecCCCCCccccceeecccCCccee
Q 009203          307 LNKTKGRACVTFLDDK-PH---VKGIINSIIFLPWENPCFATGGS--DHAVVL--WSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       307 ~~~~~~~~~~~~~~~~-~~---~~~~v~~~~~~p~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      +.+++   .+..+... ..   .......++|+| ++++++++..  +..|.+  +|+.+ .     ..+...   + + 
T Consensus       103 ~~T~~---vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t-v-----~~i~v~---~-~-  167 (368)
T 1mda_H          103 PVTFL---PIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD-D-----QLTKSA---S-C-  167 (368)
T ss_dssp             TTTCC---EEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE-E-----EEEECS---S-C-
T ss_pred             CCCCC---EEEEEECCCccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh-c-----eEEECC---C-c-
Confidence            99873   34443211 00   012356899999 9988888764  467888  99876 1     222111   1 1 


Q ss_pred             EEEeccCC-CEEEEEeCCCeEEEEECCC-----CCeeee----eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          379 GVAGMQQK-QIVLSAGADKRIIGFDAGV-----GRADFK----HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       379 ~l~~s~~~-~~l~~~~~dg~i~iwd~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                       +.+.|+| ..+++.+.||.+.+.|+.+     ++....    ...+....  . .+++.  .++++ +. +.|.+.|+.
T Consensus       168 -~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~--~~~~v-s~-~~V~viD~~  239 (368)
T 1mda_H          168 -FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPG--MLVWA-VA-SSILQGDIP  239 (368)
T ss_dssp             -CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTT--EEEEC-BS-SCCEEEECC
T ss_pred             -eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCC--EEEEE-cC-CEEEEEECC
Confidence             1223443 3445566788888888876     333211    11111111  2 33331  33333 34 899999997


Q ss_pred             CCcc-eeeeeccccc----cCccccCeEEEEEcCCCCEEEEEeC---------CCcEEEEeccCCCCcccccccccccce
Q 009203          449 LRQT-EIHAFGWKQE----SSESQSALINQSWSPDGLYITSGSA---------DPVIHLFDIRYSANKPSQSIRAHQKRV  514 (540)
Q Consensus       449 ~~~~-~~~~~~~~~~----~~~~~~~v~~~~~sp~g~~l~sg~~---------dg~i~iwd~~~~~~~~~~~~~~h~~~i  514 (540)
                      +... ....+.....    ..........++|+|||+.++.+..         ++.+.++|+.+  .+.+..+.... ..
T Consensus       240 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t--~~vv~~i~vg~-~p  316 (368)
T 1mda_H          240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--GQTSGPISNGH-DS  316 (368)
T ss_dssp             SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--CCEEECCEEEE-EE
T ss_pred             CCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC--CeEEEEEECCC-Cc
Confidence            5432 1111110000    0001111222689999998876533         23566999998  67777776544 58


Q ss_pred             eEEEEcCCCC-EEEEEE-cCCcEEEEeC
Q 009203          515 FKAVWHYSHP-LLISIS-SDLNIGLHKI  540 (540)
Q Consensus       515 ~~l~~s~~~~-~l~s~~-~dg~v~iw~l  540 (540)
                      .+|+|+|||+ ++++.. .++.|.++|+
T Consensus       317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          317 DAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             CEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             ceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence            9999999997 566666 5999999985

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=7.9e-10  Score=105.71  Aligned_cols=232  Identities=13%  Similarity=0.058  Sum_probs=140.0

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecC----CCCcccceeEEEEeCCCCCEEEEEec---
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDD----KPHVKGIINSIIFLPWENPCFATGGS---  347 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~~l~s~~~---  347 (540)
                      ..+..++++++|+++++...  ..++.++||.+.++   . +..+..    ...+-..+.++++++ ++.++++...   
T Consensus        17 ~~p~~va~~~~g~~~v~~~~--~~~~~~~l~~~~~g---~-~~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~   89 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQ--FYQPEMQVAELTQD---G-LIPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQS   89 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECG--GGCCSCSEEEEETT---E-EEESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHH
T ss_pred             CCcceEEECCCCCEEEEeCC--CCCCceEEEEECCC---C-eecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCc
Confidence            45788999999998888611  12343555655433   2 222211    112345699999999 7877666543   


Q ss_pred             --CCcEEEEecCCCCCccccceeec----ccCCcceeEEEeccCCCEE-EEEe---CCCeEEEEECCCCCeeeeeccCcc
Q 009203          348 --DHAVVLWSERDAEDSWKPKALHR----NLHSSAVMGVAGMQQKQIV-LSAG---ADKRIIGFDAGVGRADFKHQIESK  417 (540)
Q Consensus       348 --dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~l~~s~~~~~l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~~  417 (540)
                        ++.|.+||+.+++..   ..+..    ..+...+..+++++++..+ ++..   .++.|.+||+.+++..........
T Consensus        90 ~~~~~i~~~d~~tg~~~---~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~  166 (343)
T 2qe8_A           90 KSVPKLVAWDTLNNQLS---RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG  166 (343)
T ss_dssp             TSCCEEEEEETTTTEEE---EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred             CCCCeEEEEECCCCeEE---EEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence              578999999987631   22211    1133457899999865454 5544   578999999988876443321100


Q ss_pred             --EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-cEEEE
Q 009203          418 --CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-VIHLF  494 (540)
Q Consensus       418 --~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-~i~iw  494 (540)
                        .....+.+++   ..+.+.+.++.++.|.                     ..+..++|+|+|+.|+.+..++ .|+.+
T Consensus       167 ~~~~~~~~~~~g---~~~~~~~~~g~~~~~~---------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          167 IAPEDIDLVIDG---VPVQIGQPDGTVIRPH---------------------LGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             TSCCSCCCEETT---EECBEECTTSCEECCC---------------------CCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             ccccccceeECC---EEEEeccCCCceecee---------------------cccceeEeccCCCEEEEEeCCCCeEEEE
Confidence              0001122222   3444555566654442                     1367899999999888887666 44444


Q ss_pred             eccCCC-C-----cccccc--cccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          495 DIRYSA-N-----KPSQSI--RAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       495 d~~~~~-~-----~~~~~~--~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +..... .     +....+  .++.+....++++++|.++++...++.|.+||.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            432100 0     011111  134445678999999999999989999999973

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.17  E-value=3.3e-09  Score=110.78  Aligned_cols=291  Identities=9%  Similarity=0.002  Sum_probs=171.0

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCC-CCCC-CCc-eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCc
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS-PKHR-RWP-EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGR  313 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~h~-~~V-~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~  313 (540)
                      ..|++++.++.|.-+|..+++.+.++........ .... ..+ ..++.  ++..|+++    +.|+.|..+|..+++..
T Consensus        71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~----~~dg~l~AlDa~TG~~~  144 (689)
T 1yiq_A           71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVG----VLDGRLEAIDAKTGQRA  144 (689)
T ss_dssp             TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEE----CTTSEEEEEETTTCCEE
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEE----ccCCEEEEEECCCCCEe
Confidence            3566667788999999999887776643211000 0000 001 12233  35678887    88999999999998432


Q ss_pred             eeEEeecCCCCccccee-EEEEeCCCCCEEEEEe------cCCcEEEEecCCCCCccccceeecc---------------
Q 009203          314 ACVTFLDDKPHVKGIIN-SIIFLPWENPCFATGG------SDHAVVLWSERDAEDSWKPKALHRN---------------  371 (540)
Q Consensus       314 ~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~---------------  371 (540)
                      ........ ......+. +..+.  ++ .++.++      .+|.|+.||..+++.+|+.......               
T Consensus       145 W~~~~~~~-~~~~~~~~~sP~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~  220 (689)
T 1yiq_A          145 WSVDTRAD-HKRSYTITGAPRVV--NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAK  220 (689)
T ss_dssp             EEEECCSC-TTSCCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHT
T ss_pred             eeecCcCC-CCCCccccCCcEEE--CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccc
Confidence            22222100 00001111 11121  34 444443      3689999999999987765432100               


Q ss_pred             -----------cCCcceeEEEeccCCCEEEEEeCCCe-------------------EEEEECCCCCeeeeeccCc-----
Q 009203          372 -----------LHSSAVMGVAGMQQKQIVLSAGADKR-------------------IIGFDAGVGRADFKHQIES-----  416 (540)
Q Consensus       372 -----------~~~~~v~~l~~s~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~-----  416 (540)
                                 ++......++++|++.+++.++.++.                   |..||.++|+.+..++...     
T Consensus       221 ~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd  300 (689)
T 1yiq_A          221 TWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWD  300 (689)
T ss_dssp             TCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSC
T ss_pred             ccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccc
Confidence                       01111236788898999999988764                   9999999999877654321     


Q ss_pred             -----cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec----cccc-----------------cCccc---
Q 009203          417 -----KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG----WKQE-----------------SSESQ---  467 (540)
Q Consensus       417 -----~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~-----------------~~~~~---  467 (540)
                           .........++.....++.++.+|.++++|..+++......-    +...                 .....   
T Consensus       301 ~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~  380 (689)
T 1yiq_A          301 YTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNL  380 (689)
T ss_dssp             CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEE
T ss_pred             ccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeE
Confidence                 111111111221113788899999999999999886421100    0000                 00000   


Q ss_pred             --------cCeEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEE
Q 009203          468 --------SALINQSWSPDGLYITSGSA---------------------------------------------DPVIHLF  494 (540)
Q Consensus       468 --------~~v~~~~~sp~g~~l~sg~~---------------------------------------------dg~i~iw  494 (540)
                              ..-..++|+|+..++++...                                             +|.|+.|
T Consensus       381 ~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~  460 (689)
T 1yiq_A          381 VTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAW  460 (689)
T ss_dssp             ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEE
T ss_pred             eCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEE
Confidence                    01123789998887776532                                             3779999


Q ss_pred             eccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          495 DIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       495 d~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |+.+  ++.+-.+..+. ++....+...+.+++.++.||.|+.||.
T Consensus       461 D~~t--G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          461 DPVK--QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             ETTT--TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             ECCC--CCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence            9987  66665555433 3444466667889999999999999984

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.17  E-value=3.2e-09  Score=110.96  Aligned_cols=276  Identities=12%  Similarity=0.051  Sum_probs=162.4

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEecCCCeEEEEeec--CCCCCeEEEEecCCCCC
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHPQGNSLFSAHTA--DSGDSQISVLNLNKTKG  312 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~~--~~~d~~i~vwd~~~~~~  312 (540)
                      +..|+.++.|+.|..+|..+++....+......   .....+.+ ..+ .++ .++++...  .+.++.|..||..+++.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADH---KRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKE  195 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCT---TSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCC---CCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcE
Confidence            346788889999999999999987766542000   00011111 111 144 44444100  01378999999999854


Q ss_pred             ceeEEeecCCCC-------------------------cccceeEEEEeCCCCCEEEEEecCCc-----------------
Q 009203          313 RACVTFLDDKPH-------------------------VKGIINSIIFLPWENPCFATGGSDHA-----------------  350 (540)
Q Consensus       313 ~~~~~~~~~~~~-------------------------~~~~v~~~~~~p~~~~~l~s~~~dg~-----------------  350 (540)
                      ..........+.                         .......++++| +..+++.++.++.                 
T Consensus       196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~  274 (689)
T 1yiq_A          196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFL  274 (689)
T ss_dssp             EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred             EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceee
Confidence            333322111100                         001113678888 7788888887763                 


Q ss_pred             --EEEEecCCCCCccccceeeccc----CCcceeEEEeccCCC---EEEEEeCCCeEEEEECCCCCeeeeeccCc--c--
Q 009203          351 --VVLWSERDAEDSWKPKALHRNL----HSSAVMGVAGMQQKQ---IVLSAGADKRIIGFDAGVGRADFKHQIES--K--  417 (540)
Q Consensus       351 --i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~--  417 (540)
                        |..||..+++..|..+......    ....+.......+|.   .++.++.+|.++++|.++|+.+.......  .  
T Consensus       275 ~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~  354 (689)
T 1yiq_A          275 SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK  354 (689)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence              9999999999876554321110    111222222223565   78889999999999999999864322111  0  


Q ss_pred             ------------------------------------EEEEeecCCCCCceEEEEEc------------------------
Q 009203          418 ------------------------------------CMSVLPNPCDFNLFMVQTGT------------------------  437 (540)
Q Consensus       418 ------------------------------------~~~~~~~~~~~~~~~l~~~~------------------------  437 (540)
                                                          -..++++|..   .++++..                        
T Consensus       355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~---~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (689)
T 1yiq_A          355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT---GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ  431 (689)
T ss_dssp             EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT---TEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred             ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC---CEEEEeccccceeeeeccccccccccccccc
Confidence                                                0013445543   2333321                        


Q ss_pred             ---------------------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203          438 ---------------------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI  496 (540)
Q Consensus       438 ---------------------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~  496 (540)
                                           .+|.|..||+.+++......        +..++..-.+...+.++++|+.||.|+.||.
T Consensus       432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--------~~~~~~~g~~~tagglvf~gt~dg~l~a~D~  503 (689)
T 1yiq_A          432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP--------YVTIFNGGTLSTAGNLVFEGSADGRVIAYAA  503 (689)
T ss_dssp             CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE--------ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc--------CCCCccCccceECCCEEEEECCCCcEEEEEC
Confidence                                 14789999999988544321        1122233355567889999999999999999


Q ss_pred             cCCCCccccccccccc-ceeEEEEcCCCC-EEEEEE
Q 009203          497 RYSANKPSQSIRAHQK-RVFKAVWHYSHP-LLISIS  530 (540)
Q Consensus       497 ~~~~~~~~~~~~~h~~-~i~~l~~s~~~~-~l~s~~  530 (540)
                      .+  ++.+..+....+ ...-+.|..+|+ |+++.+
T Consensus       504 ~t--G~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          504 DT--GEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             TT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CC--CccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence            98  777777664432 224467778886 444443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.16  E-value=3e-09  Score=110.90  Aligned_cols=289  Identities=8%  Similarity=-0.013  Sum_probs=171.4

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCC----CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCc
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP----KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGR  313 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~----~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~  313 (540)
                      .|+.++.++.|.-+|..+++.+.++.........    .+ .....+++  ++..|+++    +.|+.|..+|..+++..
T Consensus        79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~~a~--~~~~v~v~----~~dg~l~alD~~tG~~~  151 (677)
T 1kb0_A           79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCD-VVNRGVAL--WKGKVYVG----AWDGRLIALDAATGKEV  151 (677)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSC-SCCCCCEE--ETTEEEEE----CTTSEEEEEETTTCCEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccc-CCCCCceE--ECCEEEEE----cCCCEEEEEECCCCCEE
Confidence            4555666788888888888876665432110000    00 00122333  35678887    88999999999998432


Q ss_pred             eeEEeecCCCCccccee-EEEEeCCCCCEEEEEec------CCcEEEEecCCCCCccccceeecc---------------
Q 009203          314 ACVTFLDDKPHVKGIIN-SIIFLPWENPCFATGGS------DHAVVLWSERDAEDSWKPKALHRN---------------  371 (540)
Q Consensus       314 ~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~---------------  371 (540)
                      ........ ......+. .....  + ..++.++.      ++.|+.||..+++.+|+.......               
T Consensus       152 W~~~~~~~-~~~~~~~~~~p~v~--~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~  227 (677)
T 1kb0_A          152 WHQNTFEG-QKGSLTITGAPRVF--K-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR  227 (677)
T ss_dssp             EEEETTTT-CCSSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             eeecCCcC-cCcCcccccCcEEE--C-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence            22221100 00001111 11121  3 34555543      689999999999987655432111               


Q ss_pred             ------------cCCcceeEEEeccCCCEEEEEeCCC-------------------eEEEEECCCCCeeeeeccCc----
Q 009203          372 ------------LHSSAVMGVAGMQQKQIVLSAGADK-------------------RIIGFDAGVGRADFKHQIES----  416 (540)
Q Consensus       372 ------------~~~~~v~~l~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~----  416 (540)
                                  +.......++++|++..++.++.++                   .|..+|.++|+.+..++...    
T Consensus       228 ~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w  307 (677)
T 1kb0_A          228 TWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW  307 (677)
T ss_dssp             TSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             cccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence                        1111224678889999999888764                   59999999999876654321    


Q ss_pred             ------cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc----cCccccC-----------------
Q 009203          417 ------KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE----SSESQSA-----------------  469 (540)
Q Consensus       417 ------~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~----~~~~~~~-----------------  469 (540)
                            ...-+....++.....++.++.+|.|+++|..+++......-....    +.....+                 
T Consensus       308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P  387 (677)
T 1kb0_A          308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP  387 (677)
T ss_dssp             CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred             ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence                  1111111112211147888999999999999998864322100000    0000000                 


Q ss_pred             -------eEEEEEcCCCCEEEEEeC-------------------------------------------CCcEEEEeccCC
Q 009203          470 -------LINQSWSPDGLYITSGSA-------------------------------------------DPVIHLFDIRYS  499 (540)
Q Consensus       470 -------v~~~~~sp~g~~l~sg~~-------------------------------------------dg~i~iwd~~~~  499 (540)
                             -..++|+|++.++++...                                           .|.|..||+.+ 
T Consensus       388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-  466 (677)
T 1kb0_A          388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-  466 (677)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-
T ss_pred             CcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-
Confidence                   025789998888877543                                           27799999987 


Q ss_pred             CCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          500 ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       500 ~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                       ++.+-.+. +..+++...+..++.+++.++.||.+++||.
T Consensus       467 -G~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          467 -QKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             -TEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             -CcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence             56555554 3344556667778888999999999999984

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.13  E-value=4.7e-08  Score=94.71  Aligned_cols=266  Identities=8%  Similarity=-0.007  Sum_probs=158.0

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      +..++.++.++.|..+|..+++..........        ........  +..++.+    +.++.|..+|..+++.   
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--------~~~~p~~~--~~~v~v~----~~~g~l~~~d~~tG~~---  165 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--------ALSRPVVS--DGLVLIH----TSNGQLQALNEADGAV---  165 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSC--------CCSCCEEE--TTEEEEE----CTTSEEEEEETTTCCE---
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--------eEcCCEEE--CCEEEEE----cCCCeEEEEECCCCcE---
Confidence            34677788899999999999887665532211        11112222  4467777    8899999999988733   


Q ss_pred             EEeecCCCCcc--cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCC--cceeEEEecc--CCCEE
Q 009203          316 VTFLDDKPHVK--GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS--SAVMGVAGMQ--QKQIV  389 (540)
Q Consensus       316 ~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~l~~s~--~~~~l  389 (540)
                      +-.........  .........   +..++.++.++.|..+|..+++..|........+..  ..+..+...|  .+..+
T Consensus       166 ~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v  242 (376)
T 3q7m_A          166 KWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVV  242 (376)
T ss_dssp             EEEEECCC-----CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEE
T ss_pred             EEEEeCCCCceeecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEE
Confidence            22222100000  000122222   346777888999999999999865543321100000  0000011111  35677


Q ss_pred             EEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC
Q 009203          390 LSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA  469 (540)
Q Consensus       390 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  469 (540)
                      +.++.++.+..+|..+++.+....... ...+....     ..++.++.++.|..+|..+++.......    .  ....
T Consensus       243 ~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~-----~~l~~~~~~g~l~~~d~~tG~~~w~~~~----~--~~~~  310 (376)
T 3q7m_A          243 FALAYNGNLTALDLRSGQIMWKRELGS-VNDFIVDG-----NRIYLVDQNDRVMALTIDGGVTLWTQSD----L--LHRL  310 (376)
T ss_dssp             EEECTTSCEEEEETTTCCEEEEECCCC-EEEEEEET-----TEEEEEETTCCEEEEETTTCCEEEEECT----T--TTSC
T ss_pred             EEEecCcEEEEEECCCCcEEeeccCCC-CCCceEEC-----CEEEEEcCCCeEEEEECCCCcEEEeecc----c--CCCc
Confidence            888889999999999999876655433 23333332     2677777899999999998875433210    1  0111


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeE-EEEcCCCCEEEEEEcCCcEEEEe
Q 009203          470 LINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFK-AVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       470 v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~-l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      +.....  .+..|+.++.+|.|++||..+  ++.+.........+.. ...  .+..|+.++.||.|..|+
T Consensus       311 ~~~~~~--~~~~l~v~~~~g~l~~~d~~t--G~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          311 LTSPVL--YNGNLVVGDSEGYLHWINVED--GRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             CCCCEE--ETTEEEEECTTSEEEEEETTT--CCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             ccCCEE--ECCEEEEEeCCCeEEEEECCC--CcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            222222  356788888999999999988  5655555432233322 222  245788888999999987

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.13  E-value=3e-09  Score=101.41  Aligned_cols=255  Identities=9%  Similarity=-0.074  Sum_probs=152.9

Q ss_pred             EEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          228 SLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      .+.++|| +++++++.          .++.|.+||..+.+...++....... .........++|+|||++|+++    .
T Consensus        69 ~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-~~~g~~P~~ia~SpDGk~lyVa----n  142 (368)
T 1mda_H           69 LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-FSVGPRVHIIGNCASSACLLFF----L  142 (368)
T ss_dssp             EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-CCBSCCTTSEEECTTSSCEEEE----E
T ss_pred             ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc-cccCCCcceEEEcCCCCEEEEE----c
Confidence            7999997 66666654          36899999999998877774320000 0001235679999999999987    4


Q ss_pred             C--CCeEEE--EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC-----CCCcccc-ce
Q 009203          298 G--DSQISV--LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD-----AEDSWKP-KA  367 (540)
Q Consensus       298 ~--d~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~-~~  367 (540)
                      .  +..|.+  +|..+      +..+..    .+ .  +.+.|.....+++.+.||.+.+.|+.+     ++..... ..
T Consensus       143 ~~~~~~v~V~~iD~~t------v~~i~v----~~-~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~  209 (368)
T 1mda_H          143 FGSSAAAGLSVPGASD------DQLTKS----AS-C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGA  209 (368)
T ss_dssp             CSSSCEEEEEETTTEE------EEEEEC----SS-C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTT
T ss_pred             cCCCCeEEEEEEchhh------ceEEEC----CC-c--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeee
Confidence            3  467888  88875      222221    01 1  112342344556667788888888876     3321100 00


Q ss_pred             eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe--eeeeccC-----------ccEEEEeecCCCCCceEEE
Q 009203          368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA--DFKHQIE-----------SKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~-----------~~~~~~~~~~~~~~~~~l~  434 (540)
                      +.  ....+.   . .+++..++..+. +.+.+.|+..+..  +......           .....+.++|++.  ++++
T Consensus       210 i~--vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~--~lyV  280 (368)
T 1mda_H          210 QN--CSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--GIMI  280 (368)
T ss_dssp             SC--BCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--EEEE
T ss_pred             ee--CCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC--EEEE
Confidence            10  112232   3 566666666666 8999999975432  1111110           0011156777763  2333


Q ss_pred             EEc---C-----CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE-EEEEe-CCCcEEEEeccCCCCccc
Q 009203          435 TGT---P-----GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY-ITSGS-ADPVIHLFDIRYSANKPS  504 (540)
Q Consensus       435 ~~~---~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~sg~-~dg~i~iwd~~~~~~~~~  504 (540)
                      +..   .     ++.+.++|+.+.+.....       .. .....+++|+|||++ +++.. .++.|.++|+.+  .+.+
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i-------~v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t--~kvv  350 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPI-------SN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS--DQDQ  350 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECC-------EE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS--CEEE
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEE-------EC-CCCcceEEECCCCCEEEEEccCCCCeEEEEECCC--CcEE
Confidence            322   2     245669999988754322       11 125889999999984 55665 589999999998  7888


Q ss_pred             ccccccccceeEEEEcC
Q 009203          505 QSIRAHQKRVFKAVWHY  521 (540)
Q Consensus       505 ~~~~~h~~~i~~l~~s~  521 (540)
                      .++.... ..+.+++.+
T Consensus       351 ~~I~vg~-~P~~i~~~~  366 (368)
T 1mda_H          351 SSVELDK-GPESLSVQN  366 (368)
T ss_dssp             EECCCCS-CCCEEECCC
T ss_pred             EEEECCC-CCCEEEeec
Confidence            8877544 345666643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.11  E-value=4.4e-08  Score=94.87  Aligned_cols=271  Identities=12%  Similarity=0.020  Sum_probs=155.2

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCC-CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKH-RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      ..|++++.++.|..+|..+++................ ...+.+ ....++..++++    +.++.|..+|..+++.   
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~----~~~g~l~a~d~~tG~~---  125 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIG----SEKAQVYALNTSDGTV---  125 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEE----ETTSEEEEEETTTCCE---
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEE----cCCCEEEEEECCCCCE---
Confidence            4566777788999999998887655543211000000 112222 222245567777    7889999999998843   


Q ss_pred             EEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC
Q 009203          316 VTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD  395 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d  395 (540)
                      +-.....   .........   .+..++.++.++.|..+|..+++..|....................  +..+++++.+
T Consensus       126 ~W~~~~~---~~~~~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~  197 (376)
T 3q7m_A          126 AWQTKVA---GEALSRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDN  197 (376)
T ss_dssp             EEEEECS---SCCCSCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTT
T ss_pred             EEEEeCC---CceEcCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCC
Confidence            2222211   011111222   2347788888999999999999865543321100000000112222  4567888889


Q ss_pred             CeEEEEECCCCCeeeeeccCccEEE--------EeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc
Q 009203          396 KRIIGFDAGVGRADFKHQIESKCMS--------VLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ  467 (540)
Q Consensus       396 g~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~  467 (540)
                      +.|..+|..+++.+...........        +...|.-.. ..++.++.++.+..+|..+++......         .
T Consensus       198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~~~g~l~~~d~~tG~~~w~~~---------~  267 (376)
T 3q7m_A          198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALAYNGNLTALDLRSGQIMWKRE---------L  267 (376)
T ss_dssp             TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEECTTSCEEEEETTTCCEEEEEC---------C
T ss_pred             CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEecCcEEEEEECCCCcEEeecc---------C
Confidence            9999999999998766543321100        111111001 267777889999999999887543221         1


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-ccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          468 SALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-AHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       468 ~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .....+..  ++..|+.++.++.|..+|..+  ++.+.... .....+.....  .+..|+.++.+|.|.++|
T Consensus       268 ~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d  334 (376)
T 3q7m_A          268 GSVNDFIV--DGNRIYLVDQNDRVMALTIDG--GVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWIN  334 (376)
T ss_dssp             CCEEEEEE--ETTEEEEEETTCCEEEEETTT--CCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred             CCCCCceE--ECCEEEEEcCCCeEEEEECCC--CcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEE
Confidence            12334444  466788888899999999987  45443333 11122222333  245788888889888887

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.05  E-value=1.5e-08  Score=100.49  Aligned_cols=229  Identities=13%  Similarity=0.138  Sum_probs=148.4

Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE-e-CCCCCEEEEEe----------------
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF-L-PWENPCFATGG----------------  346 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-p~~~~~l~s~~----------------  346 (540)
                      ||++|+..   ...++.|.+.|+.+.   ++...+.. +. ...+..+++ . | ++.++++++                
T Consensus       100 DG~~lfVn---d~~~~rVavIdl~t~---~~~~ii~i-p~-g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A          100 DGRFLFMN---DKANTRVARVRCDVM---KCDAILEI-PN-AKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EEEEEEEE---ETTTTEEEEEETTTT---EEEEEEEC-SS-CCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             CCCEEEEE---cCCCCEEEEEECCCc---eEeeEEeC-CC-CCCCcceeeeecC-CCcEEEEecccccccCCCCcccccc
Confidence            88888776   256778999999986   44543322 11 234788888 4 8 888888774                


Q ss_pred             --cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC----------------------------
Q 009203          347 --SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK----------------------------  396 (540)
Q Consensus       347 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg----------------------------  396 (540)
                        .++.+.++|..+.+..+++..      .+....++++|+|+++++.+.+.                            
T Consensus       171 ~~~~~~vtvID~~t~~v~~qI~V------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~  244 (595)
T 1fwx_A          171 ANYVNVFTAVDADKWEVAWQVLV------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  244 (595)
T ss_dssp             GGEEEEEEEEETTTTEEEEEEEE------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             cccCceEEEEECCCCeEEEEEEe------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence              345799999998765333221      12356678999999998888543                            


Q ss_pred             ----------eEEEEECCC--CCe-eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee----e-eec
Q 009203          397 ----------RIIGFDAGV--GRA-DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI----H-AFG  458 (540)
Q Consensus       397 ----------~i~iwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~----~-~~~  458 (540)
                                .|.+.|.++  ++. +..........++.++|++.  ..++++..+.+|.++|+.+.....    . ...
T Consensus       245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk--~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~  322 (595)
T 1fwx_A          245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKK--HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  322 (595)
T ss_dssp             HHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSS--EEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred             ccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCC--EEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence                      377778776  444 34455555667788899884  356667788999999998642100    0 000


Q ss_pred             cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC--------CCccccccccccc-----ceeEEEEcCCCCE
Q 009203          459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS--------ANKPSQSIRAHQK-----RVFKAVWHYSHPL  525 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~--------~~~~~~~~~~h~~-----~i~~l~~s~~~~~  525 (540)
                      ..... .-......++|+|+|...++..-|+.|.+||+...        ....+..+..|-.     .-.++.++|||++
T Consensus       323 v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~  401 (595)
T 1fwx_A          323 VVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW  401 (595)
T ss_dssp             EEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred             eEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCE
Confidence            00011 12346889999999954556677999999999861        1234444444432     2233456899999


Q ss_pred             EEEEEc
Q 009203          526 LISISS  531 (540)
Q Consensus       526 l~s~~~  531 (540)
                      |+++..
T Consensus       402 l~~~Nk  407 (595)
T 1fwx_A          402 LVCLSK  407 (595)
T ss_dssp             EEEEES
T ss_pred             EEEcCC
Confidence            998853

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.04  E-value=1.6e-10  Score=111.60  Aligned_cols=188  Identities=11%  Similarity=0.047  Sum_probs=102.4

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      +.++++++.||.|..||..+++...++..          ..+.+..+..++..++++    +.|+.|+.||..+++.   
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------~~~~s~p~~~~g~~~v~~----s~dg~l~a~d~~tG~~---   71 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------DPVLQVPTHVEEPAFLPD----PNDGSLYTLGSKNNEG---   71 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC----------CCSCCCC-----CCEEEC----TTTCCEEEC-----CC---
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC----------CCceecceEcCCCEEEEe----CCCCEEEEEECCCCce---
Confidence            56788999999999999999988776642          234455566778788887    8999999999988743   


Q ss_pred             EEeecCCCCccccee-EEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC
Q 009203          316 VTFLDDKPHVKGIIN-SIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA  394 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~  394 (540)
                      +..+...  ....+. +..+.  .+..+++|+.|+.|+.||..+++..|....     +.    ...++|++..+++++.
T Consensus        72 ~w~~~~~--~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-----~~----~~~~~p~~~~v~~~~~  138 (369)
T 2hz6_A           72 LTKLPFT--IPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSS-----AF----ADSLSPSTSLLYLGRT  138 (369)
T ss_dssp             SEECSCC--HHHHHTTCSCC-------CCCCEEEEEEEEECCC-------------------------------EEEEEE
T ss_pred             eeeeecc--CccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecC-----CC----cccccccCCEEEEEec
Confidence            2222210  011111 11111  334677788899999999999987654432     11    2345668889999999


Q ss_pred             CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          395 DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       395 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      |+.|+.||.++|+.+....... .....+.++......+++++.+|.|..||..+++...
T Consensus       139 dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W  197 (369)
T 2hz6_A          139 EYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW  197 (369)
T ss_dssp             EEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred             CCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence            9999999999998765543221 1112222211000256678889999999999887543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.99  E-value=6.6e-08  Score=92.62  Aligned_cols=243  Identities=11%  Similarity=0.009  Sum_probs=141.3

Q ss_pred             cCCCcEEEEEeCCceEEEEEcCCCCCcceeecccc---cC-CCCCCCCceeEEEecCCCeEEEEeec--CCCCCeEEEEe
Q 009203          233 PVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD---CL-SPKHRRWPEDIAWHPQGNSLFSAHTA--DSGDSQISVLN  306 (540)
Q Consensus       233 pd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~---~~-~~~h~~~V~~~~~~~~~~~l~s~~~~--~~~d~~i~vwd  306 (540)
                      ++...++++|..+++|.|+|+.+.....++....+   .. ..+ ......+...|+| +++++...  |...+.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            66455667777889999999976532222322221   00 001 0123467788999 66665111  22347899999


Q ss_pred             cCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-------------------cCCcEEEEecCCCCCccccce
Q 009203          307 LNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-------------------SDHAVVLWSERDAEDSWKPKA  367 (540)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~  367 (540)
                      ..+.   +.+..+.........-..+.|+| +++.+++..                   .+.+|.+||+.+++.   ...
T Consensus       171 ~~T~---~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~---~~t  243 (462)
T 2ece_A          171 HYSF---EPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR---IHS  243 (462)
T ss_dssp             TTTC---CEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE---EEE
T ss_pred             CCCC---eEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE---eeE
Confidence            9986   44555543211223345688899 888888874                   368899999998754   223


Q ss_pred             eecccCCcceeEEEe--ccCCCEEEEEeC------CCeEEEEECCCCCee--eee--c-----------------cCccE
Q 009203          368 LHRNLHSSAVMGVAG--MQQKQIVLSAGA------DKRIIGFDAGVGRAD--FKH--Q-----------------IESKC  418 (540)
Q Consensus       368 ~~~~~~~~~v~~l~~--s~~~~~l~~~~~------dg~i~iwd~~~~~~~--~~~--~-----------------~~~~~  418 (540)
                      +...........+.|  +|+++++++++.      +++|.+|....+...  ...  .                 .....
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            322112233445555  999999888774      567877665443221  000  0                 02345


Q ss_pred             EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc--eeeeecccccc--------CccccCeEEEEEcCCCCEEEEEe
Q 009203          419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT--EIHAFGWKQES--------SESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~--~~~~~~~~~~~--------~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                      ..+..++++.  .+.++.-..+.|.+||+.....  ....+..-..+        ..-.+....++++|||++|+++.
T Consensus       324 a~I~lS~DGr--fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          324 TDIDISLDDK--FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCEEECTTSC--EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eEEEECCCCC--EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            6778888873  2345555578999999964321  11111100000        00012468899999999999887

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.97  E-value=2.7e-10  Score=109.99  Aligned_cols=204  Identities=13%  Similarity=0.054  Sum_probs=107.2

Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK  364 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  364 (540)
                      ++..++++    +.|+.|..||..+++.   +-.+..     +.+.+..+.. ++..+++++.||.|+.||..+++..|.
T Consensus         8 ~~~~v~~g----s~dg~v~a~d~~tG~~---~W~~~~-----~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~   74 (369)
T 2hz6_A            8 PETLLFVS----TLDGSLHAVSKRTGSI---KWTLKE-----DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTK   74 (369)
T ss_dssp             CTTEEEEE----ETTSEEEEEETTTCCE---EEEEEC-----CCSCCCC------CCEEECTTTCCEEEC-----CCSEE
T ss_pred             eCCEEEEE----cCCCEEEEEECCCCCE---EEEecC-----CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeee
Confidence            46788888    8999999999998843   322222     1233444445 677788888999999999998886544


Q ss_pred             cceeecccCCccee-EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203          365 PKALHRNLHSSAVM-GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLR  443 (540)
Q Consensus       365 ~~~~~~~~~~~~v~-~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  443 (540)
                      ...-.    ...+. +..+. ++..+++++.++.|+.||..+|+.+........   ..++|.+   ..+++++.++.|+
T Consensus        75 ~~~~~----~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~---~~v~~~~~dg~v~  143 (369)
T 2hz6_A           75 LPFTI----PELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPST---SLLYLGRTEYTIT  143 (369)
T ss_dssp             CSCCH----HHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEE
T ss_pred             eeccC----ccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccC---CEEEEEecCCEEE
Confidence            32110    01111 11111 345677888899999999999998766544331   2334433   5788888899999


Q ss_pred             EEECCCCcceeeeeccccccCccccCeEEEEEcCCC---CEEEEEeCCCcEEEEeccCCCCccccccccccccee-EEEE
Q 009203          444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG---LYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF-KAVW  519 (540)
Q Consensus       444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~-~l~~  519 (540)
                      .||..+++......     ..    .....+++.++   ..+++++.||.|+.||..+  ++.+-.+.. ..++. ...+
T Consensus       144 a~d~~tG~~~W~~~-----~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t--G~~~W~~~~-~~pv~~~~~~  211 (369)
T 2hz6_A          144 MYDTKTRELRWNAT-----YF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES--GDVLWIQNY-ASPVVAFYVW  211 (369)
T ss_dssp             CCCSSSSSCCCEEE-----EE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTT--CCEEEEEEC-SSCEEEEEEC
T ss_pred             EEECCCCCEEEeEe-----cc----cccCccccCCccccceEEEECCCCEEEEEECCC--CcEEEEecC-CCceEEEEEe
Confidence            99999887543221     00    11222333332   5677788999999999987  555554442 33443 3445


Q ss_pred             cCCCC
Q 009203          520 HYSHP  524 (540)
Q Consensus       520 s~~~~  524 (540)
                      +++|.
T Consensus       212 ~~dg~  216 (369)
T 2hz6_A          212 QREGL  216 (369)
T ss_dssp             TTSSC
T ss_pred             cCCce
Confidence            56664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.95  E-value=4.8e-07  Score=85.45  Aligned_cols=241  Identities=11%  Similarity=0.052  Sum_probs=147.8

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC-------C-------CcccceeEEEEeCCCCCEE
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK-------P-------HVKGIINSIIFLPWENPCF  342 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------~-------~~~~~v~~~~~~p~~~~~l  342 (540)
                      ..+++|.++|++++++    ..++.|..||..++.. .........       .       .....+.++++.+ +...|
T Consensus        21 p~~i~~d~~g~~l~v~----~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l   94 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTS----VQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQL   94 (322)
T ss_dssp             CCCEECCTTCSSEEEE----CTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEE
T ss_pred             ceEEEEcCCCCEEEEE----cCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcC-CCCcE
Confidence            4679999999878888    8899999999875421 111110000       0       0013478999987 33455


Q ss_pred             EEEecCCcEEEEecCCCCCccccceeec--c-cCCcceeEEEecc-CCCEEEEEeC-----------------CCeEEEE
Q 009203          343 ATGGSDHAVVLWSERDAEDSWKPKALHR--N-LHSSAVMGVAGMQ-QKQIVLSAGA-----------------DKRIIGF  401 (540)
Q Consensus       343 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~-~~~~~v~~l~~s~-~~~~l~~~~~-----------------dg~i~iw  401 (540)
                      +.+...+.|..+|..++..    ..+..  . ........+++.+ +|++.++...                 ++.|..|
T Consensus        95 ~v~d~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHA----TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             EEEETTTEEEEECTTCEEC----EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             EEEECCCCEEEEeCCCCEE----EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            5555556688888876542    12211  1 1123578899999 8987776532                 3679999


Q ss_pred             ECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc-eeeeeccccccCccccCeEEEEEcCCCC
Q 009203          402 DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT-EIHAFGWKQESSESQSALINQSWSPDGL  480 (540)
Q Consensus       402 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~  480 (540)
                      |..+++.............++++|++.  .++++-...+.|.+|++..... ....+.   ..   .+ ...++++++|+
T Consensus       171 d~~~~~~~~~~~~~~~p~gia~~~dg~--~lyv~d~~~~~I~~~~~~~~~~~~~~~~~---~~---~g-P~gi~~d~~G~  241 (322)
T 2fp8_A          171 DPSTKETTLLLKELHVPGGAEVSADSS--FVLVAEFLSHQIVKYWLEGPKKGTAEVLV---KI---PN-PGNIKRNADGH  241 (322)
T ss_dssp             ETTTTEEEEEEEEESCCCEEEECTTSS--EEEEEEGGGTEEEEEESSSTTTTCEEEEE---EC---SS-EEEEEECTTSC
T ss_pred             eCCCCEEEEeccCCccCcceEECCCCC--EEEEEeCCCCeEEEEECCCCcCCccceEE---eC---CC-CCCeEECCCCC
Confidence            987765433222223445678888762  2445556678999999875321 111111   11   12 78899999998


Q ss_pred             EEEEEeC----------CCcEEEEeccCCCCccccccccc----ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          481 YITSGSA----------DPVIHLFDIRYSANKPSQSIRAH----QKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       481 ~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~h----~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +.++...          .+.|..+|..   ++.+..+...    ...++++++ .++.++++...++.|.++++
T Consensus       242 l~va~~~~~~~~~~~~~~~~v~~~d~~---G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          242 FWVSSSEELDGNMHGRVDPKGIKFDEF---GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             EEEEEEEETTSSTTSCEEEEEEEECTT---SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred             EEEEecCcccccccCCCccEEEEECCC---CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence            7766544          4667778765   5555555432    235677777 46666666667788888764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.94  E-value=3.3e-06  Score=77.20  Aligned_cols=224  Identities=13%  Similarity=0.053  Sum_probs=138.1

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ..+.+++|+|+++.++++-..++.|..++...... ..+.       .........+++++++..|+.+   +...+.|.
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~-------~~~~~~p~~ia~d~~~~~lyv~---d~~~~~I~  104 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTII-------RQDLGSPEGIALDHLGRTIFWT---DSQLDRIE  104 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEE-------CTTCCCEEEEEEETTTTEEEEE---ETTTTEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEE-------ECCCCCccEEEEEecCCeEEEE---ECCCCEEE
Confidence            45789999996566777777788999999876542 2221       1112356899999976655554   16678999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---CCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                      +++++... .  ......   .......++++| ++..|+.+..   .+.|..+++.....    ..+. .........+
T Consensus       105 ~~~~~g~~-~--~~~~~~---~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~~----~~~~-~~~~~~P~gi  172 (267)
T 1npe_A          105 VAKMDGTQ-R--RVLFDT---GLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTNR----RILA-QDNLGLPNGL  172 (267)
T ss_dssp             EEETTSCS-C--EEEECS---SCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCCC----EEEE-CTTCSCEEEE
T ss_pred             EEEcCCCC-E--EEEEEC---CCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCCc----EEEE-ECCCCCCcEE
Confidence            99987431 1  122221   113478999999 5555544443   36888888865431    2221 1123467899


Q ss_pred             EeccCCCEEEEE-eCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          381 AGMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       381 ~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      ++++++..|+.+ ...+.|.++|+.................++... +   .++++....+.|.++|..+++......  
T Consensus       173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~-~---~lyva~~~~~~v~~~d~~~g~~~~~i~--  246 (267)
T 1npe_A          173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYG-K---NLYYTDWKTNSVIAMDLAISKEMDTFH--  246 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEET-T---EEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             EEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeC-C---EEEEEECCCCeEEEEeCCCCCceEEEc--
Confidence            999987666554 456799999997544322222233445555542 2   466666677899999998776433211  


Q ss_pred             ccccCccccCeEEEEEcCCCC
Q 009203          460 KQESSESQSALINQSWSPDGL  480 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~  480 (540)
                          .+.......+++.|++.
T Consensus       247 ----~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          247 ----PHKQTRLYGITIALSQC  263 (267)
T ss_dssp             ----CSSCCCCCCEEEECSCC
T ss_pred             ----cccccccceeeecCccC
Confidence                11122366777877754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.93  E-value=4e-06  Score=76.64  Aligned_cols=252  Identities=8%  Similarity=0.007  Sum_probs=151.2

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcc----eeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCc
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGA----SLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGR  313 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~----~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~  313 (540)
                      +|+.+.. +.|+.+++.......    .+...       ....+.+++|++++..|+.+   +..++.|..+++....  
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~-------~~~~~~gi~~d~~~~~ly~~---d~~~~~I~~~~~~g~~--   69 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHI-------PAKVIIGLAFDCVDKVVYWT---DISEPSIGRASLHGGE--   69 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE-------EEEEEEEEEEETTTTEEEEE---ETTTTEEEEEESSSCC--
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecC-------CCCcEEEEEEecCCCEEEEE---ECCCCEEEEEecCCCC--
Confidence            4444443 478888887543210    11100       01235789999977666554   1678899999998542  


Q ss_pred             eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe
Q 009203          314 ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG  393 (540)
Q Consensus       314 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~  393 (540)
                       .......   ......++++++..+.++++....+.|.++++.....    ..+.. ........++++|++..|+.+.
T Consensus        70 -~~~~~~~---~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----~~~~~-~~~~~P~~i~vd~~~g~lyv~~  140 (267)
T 1npe_A           70 -PTTIIRQ---DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR----RVLFD-TGLVNPRGIVTDPVRGNLYWTD  140 (267)
T ss_dssp             -CEEEECT---TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEC-SSCSSEEEEEEETTTTEEEEEE
T ss_pred             -cEEEEEC---CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE----EEEEE-CCCCCccEEEEeeCCCEEEEEE
Confidence             1222221   1235789999983345555556678899999875432    22211 1224578999999766665555


Q ss_pred             C---CCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC
Q 009203          394 A---DKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA  469 (540)
Q Consensus       394 ~---dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  469 (540)
                      .   .+.|..+++......... ........+++++++.  .++++....+.|.++|+....... ..      .. ...
T Consensus       141 ~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~--~lyv~d~~~~~I~~~~~~g~~~~~-~~------~~-~~~  210 (267)
T 1npe_A          141 WNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS--QLCWVDAGTHRAECLNPAQPGRRK-VL------EG-LQY  210 (267)
T ss_dssp             CCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTEEEEEE-EE------EC-CCS
T ss_pred             CCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCC--EEEEEECCCCEEEEEecCCCceEE-Ee------cC-CCC
Confidence            4   368888988643321111 2234577888888642  456667777899999997543211 11      11 123


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccc-cceeEEEEcCCCC
Q 009203          470 LINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ-KRVFKAVWHYSHP  524 (540)
Q Consensus       470 v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~-~~i~~l~~s~~~~  524 (540)
                      ...++.. .+.++++....+.|.++|..+  ++.+..+.... .....+++.|++.
T Consensus       211 P~gi~~d-~~~lyva~~~~~~v~~~d~~~--g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          211 PFAVTSY-GKNLYYTDWKTNSVIAMDLAI--SKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEEEETTT--TEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             ceEEEEe-CCEEEEEECCCCeEEEEeCCC--CCceEEEccccccccceeeecCccC
Confidence            4567664 344444554668999999986  56666665332 2467888888764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.90  E-value=2.1e-06  Score=80.36  Aligned_cols=225  Identities=12%  Similarity=0.096  Sum_probs=137.6

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC--cEEE
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH--AVVL  353 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--~i~i  353 (540)
                      ....++|+++|+++++.    ..++.|..||....    ....+..    ...+.++++.+ +++++++.....  .|..
T Consensus        33 ~pegia~~~~g~lyv~d----~~~~~I~~~d~~g~----~~~~~~~----~~~p~gia~~~-dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTN----HEVGEIVSITPDGN----QQIHATV----EGKVSGLAFTS-NGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             CEEEEEECTTSCEEEEE----TTTTEEEEECTTCC----EEEEEEC----SSEEEEEEECT-TSCEEEEEECTTSCEEEE
T ss_pred             CcceEEECCCCCEEEEe----CCCCeEEEECCCCc----eEEEEeC----CCCceeEEEcC-CCcEEEEeccCCcceEEE
Confidence            35689999999877776    68899999998743    2222222    24588999999 888766654332  4667


Q ss_pred             EecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-ee-ee---------ccCccEEEEe
Q 009203          354 WSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-DF-KH---------QIESKCMSVL  422 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~-~~---------~~~~~~~~~~  422 (540)
                      +|..+++.    ..+...........++..+++..+++...++.|+++|...+.. +. ..         ..-.....+ 
T Consensus       100 ~d~~~g~~----~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-  174 (306)
T 2p4o_A          100 LVKSDGTV----ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-  174 (306)
T ss_dssp             EECTTSCE----EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred             EcCCCCeE----EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence            77777653    2221111222344555555555555555688999999876421 11 00         011123344 


Q ss_pred             ecCCCCCceEEEEEcCCCeEEEEECCC-Ccce-eeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC
Q 009203          423 PNPCDFNLFMVQTGTPGRQLRLYDIRL-RQTE-IHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA  500 (540)
Q Consensus       423 ~~~~~~~~~~l~~~~~dg~v~i~d~~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~  500 (540)
                       ++++.  .++++-...+.|..||+.. +... ...+.   .    ......++++++|+++++....+.|.+|+..   
T Consensus       175 -s~dg~--~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~---~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~---  241 (306)
T 2p4o_A          175 -KRFGN--FLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---E----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD---  241 (306)
T ss_dssp             -EEETT--EEEEEETTTTEEEEEEBCTTSCBCCCEEEE---E----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT---
T ss_pred             -CcCCC--EEEEEeCCCCEEEEEEeCCCCCCCccEEEe---c----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC---
Confidence             44431  4666777788999999875 2210 11110   0    1246678999999988777778899999976   


Q ss_pred             Ccc--cccccccccceeEEEEc---CCCCEEEEEEc
Q 009203          501 NKP--SQSIRAHQKRVFKAVWH---YSHPLLISISS  531 (540)
Q Consensus       501 ~~~--~~~~~~h~~~i~~l~~s---~~~~~l~s~~~  531 (540)
                      ++.  +..+.......++++|.   |+++.|+.++.
T Consensus       242 G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          242 RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            343  22333333568999998   88876665554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.89  E-value=1.1e-07  Score=90.02  Aligned_cols=262  Identities=8%  Similarity=0.018  Sum_probs=155.5

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ...+.++...++ +. |..++.+  +..+|. +++....+..        .........+.  +..|..+    +.++.|
T Consensus        59 ~~~~~~~~~~~~-g~-l~v~t~~--l~~~d~-~g~~~~~~~~--------~~~~~~~~~~~--~~~l~v~----t~~~~l  119 (330)
T 3hxj_A           59 EIIECRPSIGKD-GT-IYFGSDK--VYAINP-DGTEKWRFDT--------KKAIVSDFTIF--EDILYVT----SMDGHL  119 (330)
T ss_dssp             GEEEECCEETTT-TE-ECCSSCE--EEEECC-CGGGGGGSCC-------------CCEEEE--TTEEEEE----CTTSEE
T ss_pred             CCcccceEEecC-Cc-EEEecCc--EEEECC-CCcEEEEEEC--------CCCcccCceEE--CCEEEEE----ecCCEE
Confidence            345677777764 55 4444444  888885 4444333321        11122334444  4567777    788999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      ..+|.. +.  . ......   ....+.++...+ ++. +..++.++.|..||.. ++..+...     .....+.++.+
T Consensus       120 ~~~d~~-g~--~-~~~~~~---~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-----~~~~~~~~~~~  184 (330)
T 3hxj_A          120 YAINTD-GT--E-KWRFKT---KKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFK-----TNDAITSAASI  184 (330)
T ss_dssp             EEECTT-SC--E-EEEEEC---SSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEE-----CSSCCCSCCEE
T ss_pred             EEEcCC-CC--E-EEEEcC---CCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEe-----cCCCceeeeEE
Confidence            999988 52  2 222221   123456666765 555 6667778999999998 65422221     23455677777


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ  461 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  461 (540)
                      .+++.+++ ++  +.|..|| .+++........ ..+.++...+++    .+..++.++.|..+|.. +... ..+.   
T Consensus       185 d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g----~l~v~t~~~gl~~~~~~-g~~~-~~~~---  251 (330)
T 3hxj_A          185 GKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG----TIYVTSLDGHLYAINPD-GTEK-WRFK---  251 (330)
T ss_dssp             CTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS----CEEEEETTTEEEEECTT-SCEE-EEEE---
T ss_pred             cCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC----eEEEEcCCCeEEEECCC-CCEe-EEee---
Confidence            77777554 44  7899999 667665554433 334455566654    46667778888888753 3322 2111   


Q ss_pred             ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       462 ~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                         .....+.++.+.++| .|..++.+|.|..+|..   ++.+..+......+.++...++|. |..++.+|.+++..
T Consensus       252 ---~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~---g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          252 ---TGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD---GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALF  321 (330)
T ss_dssp             ---CSSCCCSCCEECTTS-CEEEECTTCEEEEECTT---SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEE
T ss_pred             ---CCCCccccceEcCCC-eEEEecCCCCEEEECCC---CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEe
Confidence               111223345566555 56667778889999863   555555544455677888878876 55578899988764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.88  E-value=7.8e-07  Score=80.00  Aligned_cols=201  Identities=8%  Similarity=-0.048  Sum_probs=132.8

Q ss_pred             ceEEEEEecCCCcEEEEEeC--CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          225 KLRSLSLNPVNEQLFVTSAL--DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ....++|+|| +.++++.+.  ++.|++.|+.+++....+...      .+ .....+++.  ++.|+.+.   -.++.+
T Consensus        22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~------~~-~fgeGi~~~--g~~lyv~t---~~~~~v   88 (266)
T 2iwa_A           22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMD------DS-YFGEGLTLL--NEKLYQVV---WLKNIG   88 (266)
T ss_dssp             CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECC------TT-CCEEEEEEE--TTEEEEEE---TTCSEE
T ss_pred             CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecC------CC-cceEEEEEe--CCEEEEEE---ecCCEE
Confidence            3689999996 766666553  579999999999877665421      11 112245554  55565541   678999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      .++|..+.   +.+..+...   ...-..  +++ ++..++.+..++.|.++|..+.+.......-.....-..++.+.|
T Consensus        89 ~viD~~t~---~v~~~i~~g---~~~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~  159 (266)
T 2iwa_A           89 FIYDRRTL---SNIKNFTHQ---MKDGWG--LAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY  159 (266)
T ss_dssp             EEEETTTT---EEEEEEECC---SSSCCE--EEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             EEEECCCC---cEEEEEECC---CCCeEE--EEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence            99999976   445555431   011233  445 666666666788999999998765222221111011124678888


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--------------ccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--------------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      . +|..++....++.|.+.|..+++.+......              .....++++|++.  .+++++...+.|.+.++.
T Consensus       160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~--~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK--RIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT--EEEEEETTCSEEEEEEEE
T ss_pred             E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC--EEEEECCCCCeEEEEEEe
Confidence            8 6765555556789999999999987665442              3557899999864  588888888999998886


Q ss_pred             CC
Q 009203          449 LR  450 (540)
Q Consensus       449 ~~  450 (540)
                      ..
T Consensus       237 ~~  238 (266)
T 2iwa_A          237 LV  238 (266)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.88  E-value=1.9e-07  Score=97.19  Aligned_cols=289  Identities=9%  Similarity=0.004  Sum_probs=165.0

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCC-CCC-CCc-eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP-KHR-RWP-EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-~h~-~~V-~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      .|+.++.++.|.-+|..+++.+.++......... ... ..+ ..+++  .+..++.+    +.|+.|..+|..+++...
T Consensus        68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~----~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVG----TLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEE----CTTSEEEEEETTTCCEEE
T ss_pred             EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEE----cCCCEEEEEECCCCCEee
Confidence            4556667888888998888877665432110000 000 001 12333  34577777    889999999999984322


Q ss_pred             eEEeecCCCCccccee-EEEEeCCCCCEEEEEec------CCcEEEEecCCCCCccccceeecc----------------
Q 009203          315 CVTFLDDKPHVKGIIN-SIIFLPWENPCFATGGS------DHAVVLWSERDAEDSWKPKALHRN----------------  371 (540)
Q Consensus       315 ~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------  371 (540)
                      .......  .....+. ...+.  ++ .++.+..      +|.|..+|..+++.+|+.......                
T Consensus       142 ~~~~~~~--~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~  216 (668)
T 1kv9_A          142 SQQTTDP--AKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT  216 (668)
T ss_dssp             EEECSCT--TSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             eeccCCC--CCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence            2222110  0001111 11121  33 4544433      589999999999987765432100                


Q ss_pred             ----------cCCcceeEEEeccCCCEEEEEeCCCe-------------------EEEEECCCCCeeeeeccC-------
Q 009203          372 ----------LHSSAVMGVAGMQQKQIVLSAGADKR-------------------IIGFDAGVGRADFKHQIE-------  415 (540)
Q Consensus       372 ----------~~~~~v~~l~~s~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~-------  415 (540)
                                ++......+++.+++..++.++.++.                   |..+|.++|+.+..++..       
T Consensus       217 ~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~  296 (668)
T 1kv9_A          217 WQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF  296 (668)
T ss_dssp             CCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             CCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc
Confidence                      01111235788888889988887763                   999999999987765542       


Q ss_pred             ---ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec----ccccc---------------Cc--------
Q 009203          416 ---SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG----WKQES---------------SE--------  465 (540)
Q Consensus       416 ---~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----~~~~~---------------~~--------  465 (540)
                         ..........++.....++.++.+|.++++|..+++.....-.    +...+               .+        
T Consensus       297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~  376 (668)
T 1kv9_A          297 TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPS  376 (668)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSC
T ss_pred             cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCC
Confidence               1111111111221113688999999999999999885421100    00000               00        


Q ss_pred             ccc--CeEEEEEcCCCCEEEEE------------------------------------eCCCcEEEEeccCCCCcccccc
Q 009203          466 SQS--ALINQSWSPDGLYITSG------------------------------------SADPVIHLFDIRYSANKPSQSI  507 (540)
Q Consensus       466 ~~~--~v~~~~~sp~g~~l~sg------------------------------------~~dg~i~iwd~~~~~~~~~~~~  507 (540)
                      ..+  .-..++++|+...++..                                    ..+|.|..||+.+  ++.+-..
T Consensus       377 ~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t--G~~~W~~  454 (668)
T 1kv9_A          377 PFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK--QKAAWKV  454 (668)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT--TEEEEEE
T ss_pred             CccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC--CcEEEEc
Confidence            000  01126788876665542                                    1247799999987  5555444


Q ss_pred             cccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          508 RAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       508 ~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ..+ .++....+...+.+++.++.||.|++||.
T Consensus       455 ~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~  486 (668)
T 1kv9_A          455 PYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSA  486 (668)
T ss_dssp             EES-SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cCC-CCCcCceeEeCCCEEEEECCcccchhhhh
Confidence            422 23344445557788999999999999983

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.85  E-value=7.9e-07  Score=92.71  Aligned_cols=278  Identities=9%  Similarity=0.026  Sum_probs=152.4

Q ss_pred             EEEEecCCCcEEEEEeCCc-----------eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          228 SLSLNPVNEQLFVTSALDG-----------VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      ++++.|.++++++.|+.+.           .+.+||..+++........     ..+.....++++..+|.+++.|    
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-----~~~~~~~~~~~~~~~g~lyv~G----  260 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-----TKHDMFCPGISMDGNGQIVVTG----  260 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-----CSCCCSSCEEEECTTSCEEEEC----
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-----CCCCCccccccCCCCCCEEEeC----
Confidence            5667763388888887543           5889999887643221110     1233334467888999998888    


Q ss_pred             C-CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cC-----CcEEEEecCCCCCccccceee
Q 009203          297 S-GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SD-----HAVVLWSERDAEDSWKPKALH  369 (540)
Q Consensus       297 ~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~~~~  369 (540)
                      + .+..+.+||..+..   .... ...+. ...-.++++.+ ++.+++.|+ .+     ..+.+||..+...    ..+.
T Consensus       261 G~~~~~v~~yd~~t~~---W~~~-~~~~~-~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W----~~~~  330 (656)
T 1k3i_A          261 GNDAKKTSLYDSSSDS---WIPG-PDMQV-ARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTW----TSLP  330 (656)
T ss_dssp             SSSTTCEEEEEGGGTE---EEEC-CCCSS-CCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEE----EEET
T ss_pred             CCCCCceEEecCcCCc---eeEC-CCCCc-cccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcc----eeCC
Confidence            5 45689999998752   2221 11111 11223556667 889999988 34     4699999987652    1110


Q ss_pred             ----cccCCcceeEEEeccCCCEEEEEeCC---------CeEEEEECCCCCeeeeecc----------CccEEEEeecCC
Q 009203          370 ----RNLHSSAVMGVAGMQQKQIVLSAGAD---------KRIIGFDAGVGRADFKHQI----------ESKCMSVLPNPC  426 (540)
Q Consensus       370 ----~~~~~~~v~~l~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~  426 (540)
                          ....... ....+..++..++.++.+         ..+..||..+.........          .....++.+...
T Consensus       331 ~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~  409 (656)
T 1k3i_A          331 NAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV  409 (656)
T ss_dssp             TSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred             Ccccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCC
Confidence                0000000 001223345555555444         3577888887653221111          112233433321


Q ss_pred             CCCceEEEEEcCCC-----------eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-------
Q 009203          427 DFNLFMVQTGTPGR-----------QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-------  488 (540)
Q Consensus       427 ~~~~~~l~~~~~dg-----------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-------  488 (540)
                      +  +.+++.|+.++           .|.+||..+..-.....   ..+. ....-.+++..|+|++++.|+.+       
T Consensus       410 ~--~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~  483 (656)
T 1k3i_A          410 K--GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS---NGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFED  483 (656)
T ss_dssp             T--TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT---TCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             C--CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEcc---CCCC-CCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence            1  15777776432           67788877654211100   0111 11112345667899999999864       


Q ss_pred             ----CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203          489 ----PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       489 ----g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                          ..+.+||..+.....+..+...........+.|+|++++.||.
T Consensus       484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                4689999986322233322222222234556799999999985

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.84  E-value=4.6e-07  Score=94.35  Aligned_cols=274  Identities=11%  Similarity=0.055  Sum_probs=156.0

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEecCCCeEEEEeec--CCCCCeEEEEecCCCCCc
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHPQGNSLFSAHTA--DSGDSQISVLNLNKTKGR  313 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~~--~~~d~~i~vwd~~~~~~~  313 (540)
                      ..++.++.|+.|..+|..+++...++......    ....+.+ .... + ..++++...  .+.++.|..+|..+++..
T Consensus       118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~----~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~  191 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA----KPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLA  191 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTT----SSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCEeeeeccCCCC----CcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence            36777888999999999999987766432110    0011111 1111 3 355554100  012589999999998543


Q ss_pred             eeEEeecCCCC-------------------------cccceeEEEEeCCCCCEEEEEecCC-------------------
Q 009203          314 ACVTFLDDKPH-------------------------VKGIINSIIFLPWENPCFATGGSDH-------------------  349 (540)
Q Consensus       314 ~~~~~~~~~~~-------------------------~~~~v~~~~~~p~~~~~l~s~~~dg-------------------  349 (540)
                      .........+.                         .......+++.| ...+++.++.++                   
T Consensus       192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~  270 (668)
T 1kv9_A          192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (668)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            33322111110                         001123478888 777888887665                   


Q ss_pred             cEEEEecCCCCCccccceeecccC----CcceeEEEeccCCC---EEEEEeCCCeEEEEECCCCCeeeeeccCc--cE--
Q 009203          350 AVVLWSERDAEDSWKPKALHRNLH----SSAVMGVAGMQQKQ---IVLSAGADKRIIGFDAGVGRADFKHQIES--KC--  418 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~~~~----~~~v~~l~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~--  418 (540)
                      .|..+|..+++..|..+.......    ..++....+..+|+   .++.++.+|.++++|..+|+.+.......  ..  
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  350 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence            399999999998766553211100    12222223333665   68889999999999999999873322111  00  


Q ss_pred             ---------------------------------EEEeecCCCCCceEEEE------------------------------
Q 009203          419 ---------------------------------MSVLPNPCDFNLFMVQT------------------------------  435 (540)
Q Consensus       419 ---------------------------------~~~~~~~~~~~~~~l~~------------------------------  435 (540)
                                                       ..++++|...   +++.                              
T Consensus       351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g---~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  427 (668)
T 1kv9_A          351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG---LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD  427 (668)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT---EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred             cccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC---EEEEeccccceEeeeeccccccccccccCccccc
Confidence                                             0123344321   2211                              


Q ss_pred             ------EcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203          436 ------GTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       436 ------~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  509 (540)
                            ...+|.|..||+.+++......        +...+....+...+.++++++.||.|++||..+  ++.+..+..
T Consensus       428 ~~~~p~~~~~g~l~A~D~~tG~~~W~~~--------~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t--G~~l~~~~~  497 (668)
T 1kv9_A          428 ATDVPAAVVSGALLAWDPVKQKAAWKVP--------YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK--GEALWQFEA  497 (668)
T ss_dssp             CCCCCGGGCEEEEEEEETTTTEEEEEEE--------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT--CCEEEEEEC
T ss_pred             cCCCCCCCccceEEEEeCCCCcEEEEcc--------CCCCCcCceeEeCCCEEEEECCcccchhhhhhc--ChhheEecC
Confidence                  1234889999999887544321        111222233444688999999999999999998  677766654


Q ss_pred             cccce-eEEEEcCCCC-EEEEEE
Q 009203          510 HQKRV-FKAVWHYSHP-LLISIS  530 (540)
Q Consensus       510 h~~~i-~~l~~s~~~~-~l~s~~  530 (540)
                      ..+.. .-+.+..+|+ +++.++
T Consensus       498 ~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          498 QSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             SSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCcccCceEEEECCEEEEEEEe
Confidence            33211 2234455776 455444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.84  E-value=6.6e-08  Score=95.95  Aligned_cols=241  Identities=9%  Similarity=-0.009  Sum_probs=151.7

Q ss_pred             cCCCcEEEE-EeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEE-e-cCCCeEEEEeec--------------
Q 009203          233 PVNEQLFVT-SALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAW-H-PQGNSLFSAHTA--------------  295 (540)
Q Consensus       233 pd~~~~l~t-g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~-~~~~~l~s~~~~--------------  295 (540)
                      +| |++|.. ...++.|.+.|+.+.++...+..       .....+..+++ + |++.+++++...              
T Consensus        99 ~D-G~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A           99 YD-GRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EE-EEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cC-CCEEEEEcCCCCEEEEEECCCceEeeEEeC-------CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence            36 455544 45567899999999876664421       11134678888 5 899998887200              


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC--------------------------
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH--------------------------  349 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--------------------------  349 (540)
                      ...++.+.++|..+.   +....+..    .+....++++| ++.++++.+.+.                          
T Consensus       171 ~~~~~~vtvID~~t~---~v~~qI~V----gg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~  242 (595)
T 1fwx_A          171 ANYVNVFTAVDADKW---EVAWQVLV----SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  242 (595)
T ss_dssp             GGEEEEEEEEETTTT---EEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             cccCceEEEEECCCC---eEEEEEEe----CCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence            123467999999875   33333321    12346688999 888888877542                          


Q ss_pred             ------------cEEEEecCC--CCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCC-------
Q 009203          350 ------------AVVLWSERD--AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGR-------  407 (540)
Q Consensus       350 ------------~i~iwd~~~--~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~-------  407 (540)
                                  .|.+.|..+  +...  ...+.   -.....++.++|||+++++++ .+.+|.++|+.+.+       
T Consensus       243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~--~~~Ip---vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l  317 (595)
T 1fwx_A          243 KAIAAGDYQELNGVKVVDGRKEASSLF--TRYIP---IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA  317 (595)
T ss_dssp             HHHHHTCSEEETTEEEEECSGGGCCSS--EEEEE---EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred             EeccCCCeeEECcEEEEeCcccCCcee--EEEEe---cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence                        366666665  2210  01111   123467899999999887766 47789999998653       


Q ss_pred             -----eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC---------cceeeeeccccccCccccCeEEE
Q 009203          408 -----ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR---------QTEIHAFGWKQESSESQSALINQ  473 (540)
Q Consensus       408 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~---------~~~~~~~~~~~~~~~~~~~v~~~  473 (540)
                           .......+.....++|+|++   ...++..-|++|.+||+...         ...+..+.. ....+|...-.++
T Consensus       318 ~~~~~v~~~v~vG~gP~h~aF~~dG---~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh~~~~~g~  393 (595)
T 1fwx_A          318 DPRSAVVAEPELGLGPLHTAFDGRG---NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGHLKTVMGE  393 (595)
T ss_dssp             CGGGGEEECCBCCSCEEEEEECTTS---EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEEEEETTTT
T ss_pred             CcccceEEEcCCCCCcceEEECCCC---eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-ccccccceeccce
Confidence                 23445667788999999988   56778888999999999762         111211110 0111333222344


Q ss_pred             EEcCCCCEEEEEeC---CCc----------EEEEeccC
Q 009203          474 SWSPDGLYITSGSA---DPV----------IHLFDIRY  498 (540)
Q Consensus       474 ~~sp~g~~l~sg~~---dg~----------i~iwd~~~  498 (540)
                      .++|||++|++...   |.-          -.++|+..
T Consensus       394 t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~  431 (595)
T 1fwx_A          394 TLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG  431 (595)
T ss_dssp             STTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred             EeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence            67899999998753   332          17899965

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.79  E-value=1.6e-06  Score=78.07  Aligned_cols=195  Identities=7%  Similarity=-0.051  Sum_probs=123.8

Q ss_pred             ceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEE-EeCCCeEEEEECC
Q 009203          328 IINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLS-AGADKRIIGFDAG  404 (540)
Q Consensus       328 ~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~dg~i~iwd~~  404 (540)
                      ....+.|++ ++.++++.+.  ++.|.++|+.+++..   ..+....+ .....+++.  +..|+. .-.++.+.++|..
T Consensus        22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~---~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVE---NIHKMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             CEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEE---EEEECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred             CcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEE---EEEecCCC-cceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence            367999998 6755555543  579999999998852   22221111 222345554  445544 4457899999999


Q ss_pred             CCCeeeeeccC-ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEE
Q 009203          405 VGRADFKHQIE-SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT  483 (540)
Q Consensus       405 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  483 (540)
                      +.+.+.....+ .....++++  +   ..++++..++.|.++|..+.+...... .. .....-..++.+.|. +|...+
T Consensus        95 t~~v~~~i~~g~~~g~glt~D--g---~~l~vs~gs~~l~viD~~t~~v~~~I~-Vg-~~~~p~~~~nele~~-dg~lyv  166 (266)
T 2iwa_A           95 TLSNIKNFTHQMKDGWGLATD--G---KILYGSDGTSILYEIDPHTFKLIKKHN-VK-YNGHRVIRLNELEYI-NGEVWA  166 (266)
T ss_dssp             TTEEEEEEECCSSSCCEEEEC--S---SSEEEECSSSEEEEECTTTCCEEEEEE-CE-ETTEECCCEEEEEEE-TTEEEE
T ss_pred             CCcEEEEEECCCCCeEEEEEC--C---CEEEEECCCCeEEEEECCCCcEEEEEE-EC-CCCcccccceeEEEE-CCEEEE
Confidence            98887766544 444445543  3   233344468899999998876433321 00 000111236778888 776566


Q ss_pred             EEeCCCcEEEEeccCCCCccccccccc-------------ccceeEEEEcCCCC-EEEEEEcCCcEEEEe
Q 009203          484 SGSADPVIHLFDIRYSANKPSQSIRAH-------------QKRVFKAVWHYSHP-LLISISSDLNIGLHK  539 (540)
Q Consensus       484 sg~~dg~i~iwd~~~~~~~~~~~~~~h-------------~~~i~~l~~s~~~~-~l~s~~~dg~v~iw~  539 (540)
                      ....++.|.+.|..+  ++.+..+...             ....+.|+|+|+++ +++++...+.|.+-+
T Consensus       167 n~~~~~~V~vID~~t--g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          167 NIWQTDCIARISAKD--GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EETTSSEEEEEETTT--CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             ecCCCCeEEEEECCC--CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            665688999999998  6666666421             12568999999987 455565677777655

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.74  E-value=4.8e-05  Score=81.32  Aligned_cols=284  Identities=10%  Similarity=0.074  Sum_probs=172.1

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ...|.++...++ |.+. .|+.+ -|.+|+..++... .+.........-....|.++...++|.+-+ |    +.++-|
T Consensus       262 ~~~i~~i~~d~~-g~lW-igt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-g----t~~~Gl  332 (795)
T 4a2l_A          262 SNYIRSLAMDSQ-NRLW-IGTFN-DLNIYHEGTDSFA-SYSSNPVENGSLSQRSVRSIFMDSQGGMWL-G----TYFGGL  332 (795)
T ss_dssp             CSBEEEEEECTT-SCEE-EEESS-CEEEEETTTTEEE-EECCCTTSTTSCSSSCEEEEEECTTSCEEE-E----ESSSCE
T ss_pred             CCeEEEEEEcCC-CCEE-EEeCC-hhheEcCCCCeEE-EEecCCCCCCCCCCCcEEEEEEeCCcCEEE-E----ECCCCe
Confidence            356999999885 6544 44445 5888997765421 111110000012346689999998887554 4    566778


Q ss_pred             EEEecCCCCCceeEEeecCC----CCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc-------
Q 009203          303 SVLNLNKTKGRACVTFLDDK----PHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN-------  371 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------  371 (540)
                      ..|+..+..    +..+...    .-....|.++...+ ++. |..|+.++-|..||..++..    ..+...       
T Consensus       333 ~~~~~~~~~----~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~~----~~~~~~~~~~~~~  402 (795)
T 4a2l_A          333 NYYHPIRNR----FKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQRF----TSYTLQEDESARG  402 (795)
T ss_dssp             EEECGGGGS----SEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCCE----EEECCC------C
T ss_pred             EEeCCCccc----ceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCcE----EEEecCCCCcccC
Confidence            888876542    1111110    11234589998887 665 55577777799999887652    222110       


Q ss_pred             cCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-----cCccEEEEeecCCCCCceEEEEEcCCCeEEEEE
Q 009203          372 LHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-----IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYD  446 (540)
Q Consensus       372 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d  446 (540)
                      .....|.+++..++|..|..|+.++-|.+||..+++......     ....+.++..++.+   . |..|+. +.+.+||
T Consensus       403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g---~-lwigt~-~Gl~~~~  477 (795)
T 4a2l_A          403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG---N-LWLGTL-SALVRFN  477 (795)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS---C-EEEEES-SCEEEEE
T ss_pred             CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC---C-EEEEec-CceeEEe
Confidence            124678999998888856778887789999998876533221     23457778777765   3 333444 5688999


Q ss_pred             CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-------ccccceeEEEE
Q 009203          447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-------AHQKRVFKAVW  519 (540)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-------~h~~~i~~l~~  519 (540)
                      ..++........ .....-....|.++..+++|.+.+...  +-|..||..+  ...  .+.       .....|.++..
T Consensus       478 ~~~~~~~~~~~~-~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~--~~~--~~~~~~~~~~l~~~~i~~i~~  550 (795)
T 4a2l_A          478 PEQRSFTTIEKE-KDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEG--LDI--QKASILPVSNVTKLFTNCIYE  550 (795)
T ss_dssp             TTTTEEEECCBC-TTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEET--TEE--EECCCSCSCGGGGSCEEEEEE
T ss_pred             CCCCeEEEcccc-ccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCC--CeE--EEecCCCCCCCCCCeeEEEEE
Confidence            876543211100 000011235789999999998766554  4588898875  222  111       23457899999


Q ss_pred             cCCCCEEEEEEcCCcEEEEe
Q 009203          520 HYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       520 s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .++|.+.++.. +| |..||
T Consensus       551 d~~g~lWigT~-~G-l~~~d  568 (795)
T 4a2l_A          551 ASNGIIWVGTR-EG-FYCFN  568 (795)
T ss_dssp             CTTSCEEEEES-SC-EEEEE
T ss_pred             CCCCCEEEEeC-CC-ceeEC
Confidence            99998766553 34 55554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.74  E-value=6.7e-05  Score=80.18  Aligned_cols=285  Identities=8%  Similarity=0.053  Sum_probs=170.6

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ...|.++...++ |. |..|+.++-|..|+....... .+..... ...-....|.++...++|.+-+ |    +.++-|
T Consensus       309 ~~~i~~i~~D~~-g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~-~~~l~~~~V~~i~~d~~g~lWi-G----t~~~Gl  379 (795)
T 4a2l_A          309 QRSVRSIFMDSQ-GG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPY-KNSLSDNVVSCIVEDKDKNLWI-G----TNDGGL  379 (795)
T ss_dssp             SSCEEEEEECTT-SC-EEEEESSSCEEEECGGGGSSE-EECCCTT-SSSCSCSSEEEEEECTTSCEEE-E----ESSSCE
T ss_pred             CCcEEEEEEeCC-cC-EEEEECCCCeEEeCCCcccce-EEcCCCC-CCCCCCCeeEEEEECCCCCEEE-E----ECCCCe
Confidence            367999999885 65 556677777999987654321 1111000 0011235688999888887554 4    566678


Q ss_pred             EEEecCCCCCceeEEeecCC-----CCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec---ccCC
Q 009203          303 SVLNLNKTKGRACVTFLDDK-----PHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR---NLHS  374 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~  374 (540)
                      ..||..++.   ........     .-....|.++...+ ++.+|..|+.++-|..||..+++.    ..+..   ....
T Consensus       380 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~----~~~~~~~~~l~~  451 (795)
T 4a2l_A          380 NLYNPITQR---FTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQV----ENFNQRNSQLVN  451 (795)
T ss_dssp             EEECTTTCC---EEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCE----EEECTTTSCCSC
T ss_pred             EEEcCCCCc---EEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcE----EEeecCCCCcCC
Confidence            999987642   22221110     01135689999887 777566778777899999987652    22211   1234


Q ss_pred             cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEEC
Q 009203          375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDI  447 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~  447 (540)
                      ..|.++...++|.+.+. +.+ -|.+||..+++......       ....+.++..++.+   . +..|+. +.|..||.
T Consensus       452 ~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g---~-lWigt~-~Gl~~~~~  524 (795)
T 4a2l_A          452 ENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK---R-LWIGGE-EGLSVFKQ  524 (795)
T ss_dssp             SCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC---C-EEEEES-SCEEEEEE
T ss_pred             CeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC---C-EEEEeC-CceEEEeC
Confidence            67899998888876554 444 58899988765533221       12456778777766   3 333444 56888998


Q ss_pred             CCCcceeeeeccc-cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCCE
Q 009203          448 RLRQTEIHAFGWK-QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHPL  525 (540)
Q Consensus       448 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~~  525 (540)
                      .+...  . +... .........|.++..+++|.+.++.. . -|..||..+..........+ ....|.++...++|.+
T Consensus       525 ~~~~~--~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~l  599 (795)
T 4a2l_A          525 EGLDI--Q-KASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRL  599 (795)
T ss_dssp             ETTEE--E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCE
T ss_pred             CCCeE--E-EecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCE
Confidence            76543  1 1100 01112345799999999998665443 3 48889877521111111111 1346889999989987


Q ss_pred             EEEEEcCCcEEEE
Q 009203          526 LISISSDLNIGLH  538 (540)
Q Consensus       526 l~s~~~dg~v~iw  538 (540)
                      .+++ .+| |..|
T Consensus       600 Wi~t-~~G-l~~~  610 (795)
T 4a2l_A          600 WLST-NRG-ISCF  610 (795)
T ss_dssp             EEEE-TTE-EEEE
T ss_pred             EEEc-CCc-eEEE
Confidence            7665 344 4444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.67  E-value=6.1e-06  Score=73.20  Aligned_cols=184  Identities=9%  Similarity=-0.002  Sum_probs=121.7

Q ss_pred             eEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE
Q 009203          226 LRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL  305 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw  305 (540)
                      ...|.|+  ++.++.+.+.+|.|+++|+.+++....+ ...         ........++++.|+.+.   ..++.+.+|
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~---------~~FgeGit~~g~~Ly~lt---w~~~~v~V~  121 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLG---------NIFAEGLASDGERLYQLT---WTEGLLFTW  121 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT---------TCCEEEEEECSSCEEEEE---SSSCEEEEE
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC---------CcceeEEEEeCCEEEEEE---ccCCEEEEE
Confidence            5788887  3788888889999999999999987776 221         122222333455555441   689999999


Q ss_pred             ecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203          306 NLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ  385 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  385 (540)
                      |..+.   +.+..+...    ..-+.+++   ++..|+.+..++.|.++|..+.+....+..-.....-..++.+.|. +
T Consensus       122 D~~Tl---~~~~ti~~~----~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d  190 (268)
T 3nok_A          122 SGMPP---QRERTTRYS----GEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N  190 (268)
T ss_dssp             ETTTT---EEEEEEECS----SCCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             ECCcC---cEEEEEeCC----CceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence            99986   555555531    22245554   5667766666889999999998753333222211112345677887 6


Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeeeccC--------------ccEEEEeecCCCCCceEEEEEc
Q 009203          386 KQIVLSAGADKRIIGFDAGVGRADFKHQIE--------------SKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       386 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      |..++..-.+..|.+.|..+++.+......              .....++++|...  +++++|-
T Consensus       191 G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~--rlfVTGK  254 (268)
T 3nok_A          191 GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG--RIFMTGK  254 (268)
T ss_dssp             TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC--CEEEEET
T ss_pred             CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC--EEEEeCC
Confidence            766655556889999999999986543321              3567899998764  4667764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.63  E-value=8.2e-06  Score=72.42  Aligned_cols=185  Identities=8%  Similarity=0.019  Sum_probs=118.8

Q ss_pred             eEEEEEecCCCcEEEEEeCCc--eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          226 LRSLSLNPVNEQLFVTSALDG--VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       226 V~~l~~spd~~~~l~tg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ...|.|+ + +.++.+.+.+|  .|+++|+.+++...++...         .........++++.|....   ..++.+.
T Consensus        45 tqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---------~~~FgeGit~~g~~ly~lt---w~~~~v~  110 (262)
T 3nol_A           45 TEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELG---------KRYFGEGISDWKDKIVGLT---WKNGLGF  110 (262)
T ss_dssp             EEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECC---------TTCCEEEEEEETTEEEEEE---SSSSEEE
T ss_pred             cceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecC---------CccceeEEEEeCCEEEEEE---eeCCEEE
Confidence            5788998 4 67777777766  8999999999877766432         1223333334466665551   5799999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      +||..+.   +.+..+...    ..-+.++  + ++..|+.+..++.|.++|..+.+....+........-..++.+.|.
T Consensus       111 v~D~~t~---~~~~ti~~~----~eG~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          111 VWNIRNL---RQVRSFNYD----GEGWGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             EEETTTC---CEEEEEECS----SCCCCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             EEECccC---cEEEEEECC----CCceEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence            9999986   445555431    1123444  3 5566655555788999999987753322221100111345567886


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------------CccEEEEeecCCCCCceEEEEEc
Q 009203          384 QQKQIVLSAGADKRIIGFDAGVGRADFKHQI-------------ESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                       +|..++..-.+..|.+.|..+++.+.....             ......++++|...  .++++|-
T Consensus       181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~--~lfVTGK  244 (262)
T 3nol_A          181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH--RLFVTGK  244 (262)
T ss_dssp             -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT--EEEEEET
T ss_pred             -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC--EEEEECC
Confidence             676666555688999999999998655433             13457899998763  4666653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.62  E-value=1.5e-05  Score=75.16  Aligned_cols=249  Identities=11%  Similarity=0.048  Sum_probs=140.3

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccC----CCC--------CCCCceeEEEec-CCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL----SPK--------HRRWPEDIAWHP-QGNSLF  290 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~----~~~--------h~~~V~~~~~~~-~~~~l~  290 (540)
                      ....+++|+++ +.++.++..++.|..|+...+.. ..+.......    ..+        ....+.++++.+ +|++++
T Consensus        19 ~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI   96 (322)
T ss_dssp             SCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred             CCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence            34677889985 88778888889999998875432 2221100000    000        013467899998 665544


Q ss_pred             EEeecCCCCCeEEEEecCCCCCceeEEe-ecCCCCcccceeEEEEeCCCCCEEEEEec-----------------CCcEE
Q 009203          291 SAHTADSGDSQISVLNLNKTKGRACVTF-LDDKPHVKGIINSIIFLPWENPCFATGGS-----------------DHAVV  352 (540)
Q Consensus       291 s~~~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-----------------dg~i~  352 (540)
                      +     ...+.|..+|..++.. ..+.. ..+  ........+++.+.++.++++...                 ++.|.
T Consensus        97 ~-----d~~~~i~~~d~~~g~~-~~~~~~~~~--~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  168 (322)
T 2fp8_A           97 V-----DCYYHLSVVGSEGGHA-TQLATSVDG--VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLI  168 (322)
T ss_dssp             E-----ETTTEEEEECTTCEEC-EEEESEETT--EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred             E-----ECCCCEEEEeCCCCEE-EEecccCCC--CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEE
Confidence            4     3445588888765321 11111 111  111346789998734555555432                 36788


Q ss_pred             EEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEE-eCCCeEEEEECCCC---CeeeeeccCccEEEEeecCCCC
Q 009203          353 LWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA-GADKRIIGFDAGVG---RADFKHQIESKCMSVLPNPCDF  428 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~  428 (540)
                      .||..+++.    ..+..  .......++|+++|+.|+.+ +..+.|.+|++...   .......... ...++.++++ 
T Consensus       169 ~~d~~~~~~----~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G-  240 (322)
T 2fp8_A          169 KYDPSTKET----TLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADG-  240 (322)
T ss_dssp             EEETTTTEE----EEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTS-
T ss_pred             EEeCCCCEE----EEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCC-
Confidence            888876652    22211  12345789999999866655 55689999998752   2111111223 6778888876 


Q ss_pred             CceEEEEEcC----------CCeEEEEECCCCcceeeeeccccccCcc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          429 NLFMVQTGTP----------GRQLRLYDIRLRQTEIHAFGWKQESSES-QSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       429 ~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                        .++++...          .+.|..+|.. ++ ....+...   .+. ...++++++ .++.++++...++.|.++++.
T Consensus       241 --~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~-~~~~~~~~---~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          241 --HFWVSSSEELDGNMHGRVDPKGIKFDEF-GN-ILEVIPLP---PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             --CEEEEEEEETTSSTTSCEEEEEEEECTT-SC-EEEEEECC---TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             --CEEEEecCcccccccCCCccEEEEECCC-CC-EEEEEECC---CCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence              34444332          4668888875 33 22222111   111 234666666 366666666678889999887


Q ss_pred             C
Q 009203          498 Y  498 (540)
Q Consensus       498 ~  498 (540)
                      .
T Consensus       313 ~  313 (322)
T 2fp8_A          313 K  313 (322)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.61  E-value=8.7e-06  Score=72.26  Aligned_cols=186  Identities=10%  Similarity=0.063  Sum_probs=118.9

Q ss_pred             cceeEEEEeCCCCCEEEEEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEEC
Q 009203          327 GIINSIIFLPWENPCFATGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDA  403 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~  403 (540)
                      .....+.|+  ++.++.+.+.+|  .|+++|+.+++..   ..+..   ..........++++.|+... .++.+.+||.
T Consensus        43 ~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~---~~~~l---~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~  114 (262)
T 3nol_A           43 AFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTL---QQIEL---GKRYFGEGISDWKDKIVGLTWKNGLGFVWNI  114 (262)
T ss_dssp             CEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEE---EEEEC---CTTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred             cccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEE---EEEec---CCccceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence            345788998  456777777766  8999999999852   22221   12232322223355555544 5889999999


Q ss_pred             CCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccc-cCeEEEEEcCCCCEE
Q 009203          404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQ-SALINQSWSPDGLYI  482 (540)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l  482 (540)
                      .+.+.+..+........++++.     ..|+....++.|.++|..+.+...... .  ...+.. ..++.+.|. +|...
T Consensus       115 ~t~~~~~ti~~~~eG~glt~dg-----~~L~~SdGs~~i~~iDp~T~~v~~~I~-V--~~~g~~~~~lNELe~~-~G~ly  185 (262)
T 3nol_A          115 RNLRQVRSFNYDGEGWGLTHND-----QYLIMSDGTPVLRFLDPESLTPVRTIT-V--TAHGEELPELNELEWV-DGEIF  185 (262)
T ss_dssp             TTCCEEEEEECSSCCCCEEECS-----SCEEECCSSSEEEEECTTTCSEEEEEE-C--EETTEECCCEEEEEEE-TTEEE
T ss_pred             ccCcEEEEEECCCCceEEecCC-----CEEEEECCCCeEEEEcCCCCeEEEEEE-e--ccCCccccccceeEEE-CCEEE
Confidence            9999888777655545555443     244444557889999999877543321 0  001111 234567776 77666


Q ss_pred             EEEeCCCcEEEEeccCCCCccccccccc------------ccceeEEEEcCCCCEEEEEEc
Q 009203          483 TSGSADPVIHLFDIRYSANKPSQSIRAH------------QKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       483 ~sg~~dg~i~iwd~~~~~~~~~~~~~~h------------~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      +..-.++.|.+.|..+  ++.+..+...            ....+.|||+|+++.|+..|.
T Consensus       186 an~w~~~~I~vIDp~t--G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          186 ANVWQTNKIVRIDPET--GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEETTSSEEEEECTTT--CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEccCCeEEEEECCC--CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            6665688999999988  6655544321            235689999999887776664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.61  E-value=1.1e-05  Score=71.54  Aligned_cols=186  Identities=9%  Similarity=0.009  Sum_probs=119.5

Q ss_pred             cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCC
Q 009203          327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG  406 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~  406 (540)
                      .....+.|+  ++.++++.+.+|.|+++|+.+++.....    .. ....-..+++.. +.+.++.-.++.+.+||..+.
T Consensus        55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~----l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME----RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE----EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTT
T ss_pred             cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE----CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcC
Confidence            345788887  4677788888899999999999863322    11 111123355542 344444456889999999999


Q ss_pred             CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203          407 RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                      +.+..+........++++.     ..|+.+..++.|.++|..+.+...... ... ....-..++.+.|. +|...+...
T Consensus       127 ~~~~ti~~~~eGwGLt~Dg-----~~L~vSdGs~~l~~iDp~T~~v~~~I~-V~~-~g~~v~~lNeLe~~-dG~lyanvw  198 (268)
T 3nok_A          127 QRERTTRYSGEGWGLCYWN-----GKLVRSDGGTMLTFHEPDGFALVGAVQ-VKL-RGQPVELINELECA-NGVIYANIW  198 (268)
T ss_dssp             EEEEEEECSSCCCCEEEET-----TEEEEECSSSEEEEECTTTCCEEEEEE-CEE-TTEECCCEEEEEEE-TTEEEEEET
T ss_pred             cEEEEEeCCCceeEEecCC-----CEEEEECCCCEEEEEcCCCCeEEEEEE-eCC-CCcccccccccEEe-CCEEEEEEC
Confidence            9887766655545555443     345555568899999999877533321 100 00111245667776 776665555


Q ss_pred             CCCcEEEEeccCCCCccccccccc-------------ccceeEEEEcCCCCEEEEEE
Q 009203          487 ADPVIHLFDIRYSANKPSQSIRAH-------------QKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       487 ~dg~i~iwd~~~~~~~~~~~~~~h-------------~~~i~~l~~s~~~~~l~s~~  530 (540)
                      .+..|.+.|..+  ++.+..+...             ....+.|||+|+++.|+..+
T Consensus       199 ~s~~I~vIDp~T--G~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          199 HSSDVLEIDPAT--GTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCSEEEEECTTT--CBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEeCCC--CcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            688999999988  6665544321             13568999999876655554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.60  E-value=9.9e-05  Score=65.89  Aligned_cols=211  Identities=11%  Similarity=0.047  Sum_probs=129.7

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      +.|=.+.+..++|+|+++.++++...++.|...|.. ++...++...      + ....-.+++.+++.++++.    -.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~------g-~~D~EGIa~~~~g~~~vs~----E~   89 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD------F-VKDLETIEYIGDNQFVISD----ER   89 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS------S-CSSEEEEEECSTTEEEEEE----TT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC------C-CCChHHeEEeCCCEEEEEE----CC
Confidence            345556799999999766677778888999999987 6655554321      1 1335678999888876776    67


Q ss_pred             CCeEEEEecCCCCCceeEEeecC---CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee-----c
Q 009203          299 DSQISVLNLNKTKGRACVTFLDD---KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH-----R  370 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~  370 (540)
                      ++.+.++++........+.....   .........+|+|+| .++.|+++.......+|.+.............     .
T Consensus        90 ~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~  168 (255)
T 3qqz_A           90 DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR  168 (255)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred             CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc
Confidence            88999999876532122222211   112234478999999 66666666555455555554210000011111     1


Q ss_pred             ccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeeccC----------ccEEEEeecCCCCCceEEEEEcCC
Q 009203          371 NLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQIE----------SKCMSVLPNPCDFNLFMVQTGTPG  439 (540)
Q Consensus       371 ~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~d  439 (540)
                      ..+...+.+++++|.. .+++.......|..+|.. ++.+......          ...-.+++++++   .+.+ .+..
T Consensus       169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G---~lyI-vsE~  243 (255)
T 3qqz_A          169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG---NIYI-VSEP  243 (255)
T ss_dssp             TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC---CEEE-EETT
T ss_pred             ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC---CEEE-EcCC
Confidence            1234567899999854 455566667789999977 5554443332          356789999987   3333 3555


Q ss_pred             CeEEEEEC
Q 009203          440 RQLRLYDI  447 (540)
Q Consensus       440 g~v~i~d~  447 (540)
                      +.++.|.-
T Consensus       244 n~~y~f~~  251 (255)
T 3qqz_A          244 NRFYRFTP  251 (255)
T ss_dssp             TEEEEEEC
T ss_pred             ceEEEEEe
Confidence            66666643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.60  E-value=5.4e-06  Score=84.47  Aligned_cols=267  Identities=8%  Similarity=0.038  Sum_probs=148.4

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEecCCCeEEEEeecCCC------CCeEEEEecCC
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHPQGNSLFSAHTADSG------DSQISVLNLNK  309 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~~~~~------d~~i~vwd~~~  309 (540)
                      ..++.++.|+.+..+|..+++...+.......  .+  ..+.+ .... + ..++++    +.      ++.|..+|..+
T Consensus       116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~--~~--~~~~~~P~v~-~-g~v~vg----~~~~~~~~~g~v~a~D~~t  185 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPK--VG--STLTQAPFVA-K-DTVLMG----CSGAELGVRGAVNAFDLKT  185 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGG--GT--CBCCSCCEEE-T-TEEEEE----CBCGGGTCCCEEEEEETTT
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEecCCCCC--cc--ceeccCCEEE-C-CEEEEE----ecCCccCCCCEEEEEECCC
Confidence            46777788999999999999877665432110  00  01111 1111 3 455555    33      78999999998


Q ss_pred             CCCceeEEeecCC------CC-------------------------ccc-ceeEEEEeCCCCCEEEEEecC---------
Q 009203          310 TKGRACVTFLDDK------PH-------------------------VKG-IINSIIFLPWENPCFATGGSD---------  348 (540)
Q Consensus       310 ~~~~~~~~~~~~~------~~-------------------------~~~-~v~~~~~~p~~~~~l~s~~~d---------  348 (540)
                      ++...........      +.                         ..+ ....+++.+ ....++.++.+         
T Consensus       186 G~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~  264 (571)
T 2ad6_A          186 GELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMR  264 (571)
T ss_dssp             CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGS
T ss_pred             CcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCcc
Confidence            8432222221100      00                         000 012356777 55566665532         


Q ss_pred             -------CcEEEEecCCCCCccccceeecc-----cCCcceeEEEeccCCC---EEEEEeCCCeEEEEECCCCCeeeeec
Q 009203          349 -------HAVVLWSERDAEDSWKPKALHRN-----LHSSAVMGVAGMQQKQ---IVLSAGADKRIIGFDAGVGRADFKHQ  413 (540)
Q Consensus       349 -------g~i~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~l~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~  413 (540)
                             +.|..+|..+++..|..+.....     ....++. +....+|+   .++.++.+|.++++|..+|+.+....
T Consensus       265 ~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          265 PGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK  343 (571)
T ss_dssp             CSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence                   35999999999976655432110     1112221 22224674   67788899999999999999876543


Q ss_pred             cCc--------------cE--------------------------EEEeecCCCCCceEEEEE-----------------
Q 009203          414 IES--------------KC--------------------------MSVLPNPCDFNLFMVQTG-----------------  436 (540)
Q Consensus       414 ~~~--------------~~--------------------------~~~~~~~~~~~~~~l~~~-----------------  436 (540)
                      ...              .+                          ..++++|..   .++++.                 
T Consensus       344 ~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~---g~~yv~~~~~~~~~~~~~~~~~~  420 (571)
T 2ad6_A          344 VDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES---RTLYAGLNHICMDWEPFMLPYRA  420 (571)
T ss_dssp             SSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT---TEEEEEEECEEEEEEECCCCCCT
T ss_pred             ccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC---CEEEEEchhcccccccccccccc
Confidence            321              00                          112344433   123222                 


Q ss_pred             --------------------cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203          437 --------------------TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI  496 (540)
Q Consensus       437 --------------------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~  496 (540)
                                          ..+|.|..||+.+++.......        ...+.+..+...+..++.++.||.|+.||.
T Consensus       421 g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~  492 (571)
T 2ad6_A          421 GQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--------KFAAWGGTLYTKGGLVWYATLDGYLKALDN  492 (571)
T ss_dssp             TSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--------SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             CCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC--------CCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence                                1357899999998875443210        111222222335667888999999999999


Q ss_pred             cCCCCccccccccccc-ceeEEEEcCCCCEEEE
Q 009203          497 RYSANKPSQSIRAHQK-RVFKAVWHYSHPLLIS  528 (540)
Q Consensus       497 ~~~~~~~~~~~~~h~~-~i~~l~~s~~~~~l~s  528 (540)
                      .+  ++.+..+..... .-.-+.+..+|+.++.
T Consensus       493 ~t--G~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          493 KD--GKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             TT--CCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CC--CCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            98  677666653221 1122345577764443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.58  E-value=3.1e-05  Score=78.87  Aligned_cols=208  Identities=12%  Similarity=0.028  Sum_probs=116.2

Q ss_pred             EEEEEeC-CceEEEEEc-CCCCCcceeecccccCCC---CCCCCceeEEEecCCCe----EEEEeecCCCCCeEEEEecC
Q 009203          238 LFVTSAL-DGVIRLWQL-QSRGSGASLLSTTDCLSP---KHRRWPEDIAWHPQGNS----LFSAHTADSGDSQISVLNLN  308 (540)
Q Consensus       238 ~l~tg~~-dg~v~iw~~-~~~~~~~~~~~~~~~~~~---~h~~~V~~~~~~~~~~~----l~s~~~~~~~d~~i~vwd~~  308 (540)
                      .|..++. ++.|.-+|. .+++.+.++.........   .-......+++.|.+..    |+.+    +.|+.|..+|..
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~----t~dg~l~AlDa~  139 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKT----QLDGNVAALNAE  139 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE----CTTSEEEEEETT
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEE----cCCCEEEEEECC
Confidence            3444455 677888888 777766655332110000   00000123566554444    7777    889999999999


Q ss_pred             CCCCceeEEeecCCCCccccee-EEEEeCCCCCEEEEEe------cCCcEEEEecCCCCCccccceeeccc--C------
Q 009203          309 KTKGRACVTFLDDKPHVKGIIN-SIIFLPWENPCFATGG------SDHAVVLWSERDAEDSWKPKALHRNL--H------  373 (540)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~--~------  373 (540)
                      +++....... .... ....+. ...+.  ++ .++.++      .+|.|+-+|..+++.+|+........  +      
T Consensus       140 TG~~~W~~~~-~~~~-~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~  214 (599)
T 1w6s_A          140 TGETVWKVEN-SDIK-VGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN  214 (599)
T ss_dssp             TCCEEEEEEC-CCGG-GTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred             CCCEEEeecC-CCCC-ccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence            8843222221 1100 000111 11122  34 455554      37999999999999876554321100  0      


Q ss_pred             ------------------------Ccce-eEEEeccCCCEEEEEeCCC----------------eEEEEECCCCCeeeee
Q 009203          374 ------------------------SSAV-MGVAGMQQKQIVLSAGADK----------------RIIGFDAGVGRADFKH  412 (540)
Q Consensus       374 ------------------------~~~v-~~l~~s~~~~~l~~~~~dg----------------~i~iwd~~~~~~~~~~  412 (540)
                                              ...+ ..+++.++..+++.++.++                .|..+|.++|+.+..+
T Consensus       215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~  294 (599)
T 1w6s_A          215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY  294 (599)
T ss_dssp             TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred             cccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence                                    0001 1356667778888877653                8999999999987665


Q ss_pred             ccCcc----------EEEEeec-CCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          413 QIESK----------CMSVLPN-PCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       413 ~~~~~----------~~~~~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      +....          ..-+... .++.....++.++.+|.++++|..+++...
T Consensus       295 q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          295 QKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             ESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence            54321          1111111 222111467778999999999999987543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.58  E-value=3.7e-05  Score=71.74  Aligned_cols=234  Identities=12%  Similarity=0.056  Sum_probs=132.1

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC-C-Ce
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG-D-SQ  301 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~-d-~~  301 (540)
                      ....+++|+|+ +.++++-..++.|..||.... ....+ .        ....+..+++.++|+++++.    .. + ..
T Consensus        32 ~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~-~~~~~-~--------~~~~p~gia~~~dG~l~vad----~~~~~~~   96 (306)
T 2p4o_A           32 TFLENLASAPD-GTIFVTNHEVGEIVSITPDGN-QQIHA-T--------VEGKVSGLAFTSNGDLVATG----WNADSIP   96 (306)
T ss_dssp             CCEEEEEECTT-SCEEEEETTTTEEEEECTTCC-EEEEE-E--------CSSEEEEEEECTTSCEEEEE----ECTTSCE
T ss_pred             CCcceEEECCC-CCEEEEeCCCCeEEEECCCCc-eEEEE-e--------CCCCceeEEEcCCCcEEEEe----ccCCcce
Confidence            35778999995 887777778899999987643 21111 1        11347889999999966554    22 2 24


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-cccc-cee---ecccCCcc
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAED-SWKP-KAL---HRNLHSSA  376 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~-~~~---~~~~~~~~  376 (540)
                      |..+|..++.. ..+..+..    ......++..+ ++..+++...++.|+++|..++.. ++.. ..+   ........
T Consensus        97 v~~~d~~~g~~-~~~~~~~~----~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           97 VVSLVKSDGTV-ETLLTLPD----AIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EEEEECTTSCE-EEEEECTT----CSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EEEEcCCCCeE-EEEEeCCC----ccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            66677666532 11111111    12245555555 555555555688999999875421 0000 000   00011123


Q ss_pred             eeEEEeccCCCEEEEE-eCCCeEEEEECCC-CCe--eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          377 VMGVAGMQQKQIVLSA-GADKRIIGFDAGV-GRA--DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      .+.+  ++++..|+.+ ...+.|..||+.. +..  ............+++++++   .++++....+.|.+||.. ++.
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG---~l~va~~~~~~V~~~~~~-G~~  244 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG---NLYGATHIYNSVVRIAPD-RST  244 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC---CEEEECBTTCCEEEECTT-CCE
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCC---CEEEEeCCCCeEEEECCC-CCE
Confidence            4555  7788766554 4577899999874 332  1111111233456667766   566666677899999975 332


Q ss_pred             eeeeeccccccCccccCeEEEEEc---CCCCEEEEEeCCC
Q 009203          453 EIHAFGWKQESSESQSALINQSWS---PDGLYITSGSADP  489 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~s---p~g~~l~sg~~dg  489 (540)
                      .. ..    ........+++++|.   |+++.|+..+..+
T Consensus       245 ~~-~~----~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          245 TI-IA----QAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EE-EE----CGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EE-Ee----ecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            11 10    111112468999998   8887777665543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.57  E-value=0.00022  Score=67.72  Aligned_cols=239  Identities=10%  Similarity=-0.053  Sum_probs=143.3

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      +..+|.+..+ .+.++++  ....|+..++..... ..+.        .....+..++|++.+..|+.+   +...+.|.
T Consensus        34 d~~~C~~~~~-~~~ll~~--~~~~I~~i~~~g~~~-~~~~--------~~~~~~~~l~~d~~~~~ly~~---D~~~~~I~   98 (349)
T 3v64_C           34 DRRSCKALGP-EPVLLFA--NRIDIRQVLPHRSEY-TLLL--------NNLENAIALDFHHRRELVFWS---DVTLDRIL   98 (349)
T ss_dssp             TSSCEEESSS-CCEEEEE--CBSCEEEECTTSCCE-EEEE--------CSCSCEEEEEEETTTTEEEEE---ETTTTEEE
T ss_pred             CCCccccccc-CceeEee--cccceEEEeCCCCee-EEee--------cCCCceEEEEEeccccEEEEE---eccCCceE
Confidence            3456666666 2444443  234577777765432 1111        112346789999866666554   16788999


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      .+++.....   ......   .......+++.+.++.++++-...+.|.+.++.....    ..+. .........++++
T Consensus        99 r~~~~g~~~---~~~~~~---~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~----~~l~-~~~l~~P~~iavd  167 (349)
T 3v64_C           99 RANLNGSNV---EEVVST---GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR----KVLL-WQSLEKPRAIALH  167 (349)
T ss_dssp             EEETTSCSC---EEEECS---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEE-CTTCSCEEEEEEE
T ss_pred             EEecCCCCc---eEEEeC---CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce----EEEE-eCCCCCcceEEEe
Confidence            999986422   222221   1234678999874566666666778999999876542    2222 2233567899999


Q ss_pred             cCCCEEEEE-eCC-CeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          384 QQKQIVLSA-GAD-KRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       384 ~~~~~l~~~-~~d-g~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      |.+..|+.. ... +.|..+++......... ..-.....++++|.+.  .+.++-...+.|..+|+........ .   
T Consensus       168 p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~--~lY~aD~~~~~I~~~~~dG~~~~~~-~---  241 (349)
T 3v64_C          168 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR--RMYWVDAKHHVIERANLDGSHRKAV-I---  241 (349)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEE-E---
T ss_pred             cCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCC--EEEEEECCCCEEEEEeCCCCceEEE-E---
Confidence            865555544 444 78999998754332222 2234567899987653  4566667778999999875432211 1   


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                         ........++++. .+.++++-...+.|..++..+
T Consensus       242 ---~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~  275 (349)
T 3v64_C          242 ---SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFT  275 (349)
T ss_dssp             ---CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             ---eCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccC
Confidence               1123356778873 455566666678888887443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=7e-05  Score=79.20  Aligned_cols=217  Identities=12%  Similarity=0.117  Sum_probs=120.1

Q ss_pred             EEeccchhcccccC-ceEEEEEe-cCCCcEEEEEe-CC----ceEEEEEcCCC-CCcceeecccccCCCCCCCCceeEEE
Q 009203          211 HCHTSNHVSSLHKR-KLRSLSLN-PVNEQLFVTSA-LD----GVIRLWQLQSR-GSGASLLSTTDCLSPKHRRWPEDIAW  282 (540)
Q Consensus       211 ~~~~~~~~~~~h~~-~V~~l~~s-pd~~~~l~tg~-~d----g~v~iw~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~~  282 (540)
                      .+.+.+....+|.- .+...+|| || |++||.+. .+    .+|+++|+.++ +.+....          ......++|
T Consensus       160 vlld~n~~a~~~~~~~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~----------~~~~~~~~W  228 (751)
T 2xe4_A          160 VIIDVNQVAEGKAFCDVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV----------SGTNGEIVW  228 (751)
T ss_dssp             EEEEHHHHTTTCSCCEEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE----------EEECSCCEE
T ss_pred             EEechhHhccCCCeEEEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc----------cCceeeEEE
Confidence            34455544566664 78899999 97 77666543 23    35999999987 5321110          011346899


Q ss_pred             ecCCCeEEEEeecCCC-CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---CCcEEEEecCC
Q 009203          283 HPQGNSLFSAHTADSG-DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---DHAVVLWSERD  358 (540)
Q Consensus       283 ~~~~~~l~s~~~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~i~iwd~~~  358 (540)
                      +|||+.|+........ ...|.++++.++.... ...+...  .......+.|+| ++++|+..+.   ...|+++|+.+
T Consensus       229 spDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~-~lv~~~~--~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          229 GPDHTSLFYVTKDETLRENKVWRHVMGKLQSED-VCLYEEH--NPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CSSTTEEEEEEECTTCCEEEEEEEETTSCGGGC-EEEEECC--CTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSS
T ss_pred             ecCCCEEEEEEECCCCCCCEEEEEECCCCchhc-EEEEecC--CCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCC
Confidence            9999988776221111 1368888887653211 2222221  123467889999 9988876653   34588899987


Q ss_pred             CCCccccceeecccCCcceeEEEeccCCCEEEEEeCC----CeEEEEECCCC-C--e-eeeeccCccEEEEeecCCCCCc
Q 009203          359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD----KRIIGFDAGVG-R--A-DFKHQIESKCMSVLPNPCDFNL  430 (540)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~-~--~-~~~~~~~~~~~~~~~~~~~~~~  430 (540)
                      +........+. ........++.|+.++.+++....+    ..|..+|+.++ .  . +........+..+.+...    
T Consensus       305 ~~~~~~~~~l~-~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~----  379 (751)
T 2xe4_A          305 GNAHNTLEIVR-PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSN----  379 (751)
T ss_dssp             CTTCCCEEESS-CCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSS----
T ss_pred             CCCCceeEEee-cCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECC----
Confidence            53111001121 2233445556655433444444333    36777887652 2  2 222222223445555432    


Q ss_pred             eEEEEEcCCCe--EEEEEC
Q 009203          431 FMVQTGTPGRQ--LRLYDI  447 (540)
Q Consensus       431 ~~l~~~~~dg~--v~i~d~  447 (540)
                      .++++...++.  |.++|+
T Consensus       380 ~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          380 YLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEEEeCCEEEEEEEec
Confidence            46777777775  555665

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=8.2e-05  Score=72.88  Aligned_cols=252  Identities=10%  Similarity=0.051  Sum_probs=139.1

Q ss_pred             CceEEEEEec-CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC-CCe
Q 009203          224 RKLRSLSLNP-VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG-DSQ  301 (540)
Q Consensus       224 ~~V~~l~~sp-d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~-d~~  301 (540)
                      .....|+|+| +++.++++-. .+.|+.+|...+.. ..+..        .......++|+++|++|+++-..++. ...
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v-~~~~~--------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~  206 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYV-STVYS--------GLSKVRTICWTHEADSMIITNDQNNNDRPN  206 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEE-EEEEC--------CCSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred             CCCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEE-EEEec--------CCCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence            4568899998 3455444443 38899999876542 22211        22447789999999966665110001 113


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      +.+++.. +.... ...+..    .....+++++|.++.++++-..++.|..|+..++..    ..+...........++
T Consensus       207 v~~~~~~-g~~~~-~~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~----~~~~~~~~~~~P~gia  276 (430)
T 3tc9_A          207 NYILTRE-SGFKV-ITELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET----TPLFTIQDSGWEFHIQ  276 (430)
T ss_dssp             EEEEEGG-GTSCS-EEEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE----EEEEECSSSSCCEEEE
T ss_pred             EEEEeCC-Cceee-eeeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE----EEEEEcCCCCcceeEE
Confidence            4444443 22111 112211    123678899995666666666778999999987642    1222222234578899


Q ss_pred             eccCCCEEE-EEeCCCeEEEEECCC--CCe-----eeee-cc------------CccEE-EEeecCC-----CCCceEEE
Q 009203          382 GMQQKQIVL-SAGADKRIIGFDAGV--GRA-----DFKH-QI------------ESKCM-SVLPNPC-----DFNLFMVQ  434 (540)
Q Consensus       382 ~s~~~~~l~-~~~~dg~i~iwd~~~--~~~-----~~~~-~~------------~~~~~-~~~~~~~-----~~~~~~l~  434 (540)
                      |+|+|++|+ +-...+.|..++...  +..     +... ..            -.... .++..+.     +..+.+++
T Consensus       277 ~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyv  356 (430)
T 3tc9_A          277 FHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYF  356 (430)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred             EcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEE
Confidence            999999554 445678899987653  211     0000 00            00112 2333211     12235666


Q ss_pred             EEcCCCeEEEEECCCCcceeeeecc-----cc------ccCccccCeEEEEEcCC-CCEEEEEeCCCcEEEEecc
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGW-----KQ------ESSESQSALINQSWSPD-GLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~-----~~------~~~~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~  497 (540)
                      +-...+.|+.++.. +. .....+.     ..      .....-.....++++|+ |.++++-..++.|+.++++
T Consensus       357 aD~~n~~I~~i~~~-G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          357 CDRENHCIRILTPQ-GR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEGGGTEEEEECTT-SE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EECCCcEEEEECCC-Cc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            66667888888843 32 2222211     00      00011235889999994 6666666667888888764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.55  E-value=1.8e-05  Score=80.67  Aligned_cols=288  Identities=11%  Similarity=0.026  Sum_probs=155.3

Q ss_pred             EEEEEeC-CceEEEEEc-CCCCCcceeecccccCCC--CCCCC-ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC
Q 009203          238 LFVTSAL-DGVIRLWQL-QSRGSGASLLSTTDCLSP--KHRRW-PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG  312 (540)
Q Consensus       238 ~l~tg~~-dg~v~iw~~-~~~~~~~~~~~~~~~~~~--~h~~~-V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~  312 (540)
                      .+..++. ++.|.-+|. .+++.+.++.........  ..... -..++.  ++..++.+    +.|+.|..+|..+++.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~----~~dg~l~alD~~tG~~  137 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKK----QANGHLLALDAKTGKI  137 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEE----CTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEE----eCCCEEEEEECCCCCE
Confidence            3444455 677888888 777766555322110000  00000 012333  35577777    8899999999998843


Q ss_pred             ceeEEeecCCCCccccee-EEEEeCCCCCEEEEEec------CCcEEEEecCCCCCccccceeecc--------------
Q 009203          313 RACVTFLDDKPHVKGIIN-SIIFLPWENPCFATGGS------DHAVVLWSERDAEDSWKPKALHRN--------------  371 (540)
Q Consensus       313 ~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~--------------  371 (540)
                      ...... .... ....+. .....  ++ .++.++.      ++.|..+|..+++.+|+.......              
T Consensus       138 ~W~~~~-~~~~-~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~  212 (571)
T 2ad6_A          138 NWEVEV-CDPK-VGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP  212 (571)
T ss_dssp             EEEEEC-CCGG-GTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             EEEecC-CCCC-ccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence            222221 1100 000111 11121  33 4555554      789999999999987655432110              


Q ss_pred             -------------------cCCcceeEEEeccCCCEEEEEeCC----------------CeEEEEECCCCCeeeeeccCc
Q 009203          372 -------------------LHSSAVMGVAGMQQKQIVLSAGAD----------------KRIIGFDAGVGRADFKHQIES  416 (540)
Q Consensus       372 -------------------~~~~~v~~l~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~  416 (540)
                                         +.......+++.++...++.++.+                +.|..+|.++|+.+..++...
T Consensus       213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~  292 (571)
T 2ad6_A          213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP  292 (571)
T ss_dssp             GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence                               000001235666766777776642                369999999999876654321


Q ss_pred             ----------cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccccc------C-ccccCe---------
Q 009203          417 ----------KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQES------S-ESQSAL---------  470 (540)
Q Consensus       417 ----------~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~------~-~~~~~v---------  470 (540)
                                ...-+....++....+++.++.+|.+.++|..+++...... .....      . ....++         
T Consensus       293 ~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~-~~~~~~w~~~~d~~~g~p~~~~~~~~~~  371 (571)
T 2ad6_A          293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK-VDPAVNVFKKVDLKTGTPVRDPEFATRM  371 (571)
T ss_dssp             TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE-SSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred             CcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec-ccCCccccccccccCCceecccccCCCC
Confidence                      11111111222111256778899999999999887543221 00000      0 000000         


Q ss_pred             -----------------EEEEEcCCCCEEEEEe-------------------------------------CCCcEEEEec
Q 009203          471 -----------------INQSWSPDGLYITSGS-------------------------------------ADPVIHLFDI  496 (540)
Q Consensus       471 -----------------~~~~~sp~g~~l~sg~-------------------------------------~dg~i~iwd~  496 (540)
                                       ..++|+|+...|++..                                     .+|.|..||.
T Consensus       372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~  451 (571)
T 2ad6_A          372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL  451 (571)
T ss_dssp             TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred             CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence                             2467888877776653                                     3478888998


Q ss_pred             cCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          497 RYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       497 ~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      .+  ++.+-.+.. ...+....+...+.+++.++.||.|+.||.
T Consensus       452 ~t--G~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~  492 (571)
T 2ad6_A          452 TT--GKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDN  492 (571)
T ss_dssp             TT--CCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred             CC--CCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence            87  555444432 222333333334667777899999999873

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.54  E-value=8.3e-06  Score=76.97  Aligned_cols=215  Identities=11%  Similarity=0.099  Sum_probs=131.6

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT  317 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~  317 (540)
                      .|..++.++.|..+|.. ++......        .+...+.++...+++. |..+    +.++.|..||.. +.   ...
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~--------~~~~~~~~~~~~~~g~-l~vg----t~~~~l~~~d~~-g~---~~~  170 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFK--------TKKAIYATPIVSEDGT-IYVG----SNDNYLYAINPD-GT---EKW  170 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEE--------CSSCCCSCCEECTTSC-EEEE----CTTSEEEEECTT-SC---EEE
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEc--------CCCceeeeeEEcCCCE-EEEE----cCCCEEEEECCC-CC---EeE
Confidence            46677788999999987 65444332        1223456677777776 4555    778999999988 52   222


Q ss_pred             eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCe
Q 009203          318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKR  397 (540)
Q Consensus       318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~  397 (540)
                      .+..   ....+.++.+.+ ++.+++ ++  +.|..|| .+++..+..     ......+.++...++|. |+.++.++.
T Consensus       171 ~~~~---~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~-----~~~~~~~~~~~~~~~g~-l~v~t~~~g  236 (330)
T 3hxj_A          171 RFKT---NDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNF-----YAGYWTVTRPAISEDGT-IYVTSLDGH  236 (330)
T ss_dssp             EEEC---SSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEE-----CCSSCCCSCCEECTTSC-EEEEETTTE
T ss_pred             EEec---CCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEE-----ccCCcceeceEECCCCe-EEEEcCCCe
Confidence            2221   123466777766 666444 44  7899999 665532211     22345678888887765 555677788


Q ss_pred             EEEEECCCCCeeeeeccCcc-EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          398 IIGFDAGVGRADFKHQIESK-CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       398 i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      |..+|. ++..+........ ...+...+++    .|..++.+|.|..+|. +++... .+.      .....+.++..+
T Consensus       237 l~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g----~l~v~t~~ggl~~~d~-~g~~~~-~~~------~~~~~~~~~~~d  303 (330)
T 3hxj_A          237 LYAINP-DGTEKWRFKTGKRIESSPVIGNTD----TIYFGSYDGHLYAINP-DGTEKW-NFE------TGSWIIATPVID  303 (330)
T ss_dssp             EEEECT-TSCEEEEEECSSCCCSCCEECTTS----CEEEECTTCEEEEECT-TSCEEE-EEE------CSSCCCSCCEEC
T ss_pred             EEEECC-CCCEeEEeeCCCCccccceEcCCC----eEEEecCCCCEEEECC-CCcEEE-EEE------cCCccccceEEc
Confidence            888875 4555444333222 2223344343    5777888889999996 444322 211      123456677777


Q ss_pred             CCCCEEEEEeCCCcEEEEeccC
Q 009203          477 PDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       477 p~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ++|. |..|+.+|.+++.....
T Consensus       304 ~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          304 ENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             TTCC-EEEECTTSCEEEEEC--
T ss_pred             CCCE-EEEEcCCCeEEEEeccc
Confidence            7776 55577899999887764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.51  E-value=5.1e-05  Score=66.74  Aligned_cols=187  Identities=9%  Similarity=-0.033  Sum_probs=118.7

Q ss_pred             CceEEEEEecCCCcEEEEEeCCc--eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDG--VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      .-...|.|++  +.++.+.+.+|  .|+.+|+.+++.........         ..........++.|....   ..++.
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---------~~fgeGi~~~~~~ly~lt---w~~~~   86 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPP---------PYFGAGIVAWRDRLIQLT---WRNHE   86 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---------TCCEEEEEEETTEEEEEE---SSSSE
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---------CcceeEEEEeCCEEEEEE---eeCCE
Confidence            3467899985  66777777654  89999999998776664321         122233333455555541   68999


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      +.+||..+.   +.+..+...    ..-+.++.   ++..|+.+..++.|.++|..+.+....+..-.....-..++.+.
T Consensus        87 v~v~D~~tl---~~~~ti~~~----~~Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe  156 (243)
T 3mbr_X           87 GFVYDLATL---TPRARFRYP----GEGWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE  156 (243)
T ss_dssp             EEEEETTTT---EEEEEEECS----SCCCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EEEEECCcC---cEEEEEeCC----CCceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence            999999986   556555531    22345554   55555555568899999999877533222211101113456677


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeeeecc--------------CccEEEEeecCCCCCceEEEEEc
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI--------------ESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      |. +|..++..-.+..|.+.|..+++.+.....              ......++++|...  +++++|-
T Consensus       157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~--~lfVTGK  223 (243)
T 3mbr_X          157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD--RLFVTGK  223 (243)
T ss_dssp             EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT--EEEEEET
T ss_pred             Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC--EEEEECC
Confidence            76 676665555678999999999998654331              23557899998653  5667664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.51  E-value=2.7e-05  Score=79.34  Aligned_cols=275  Identities=11%  Similarity=0.015  Sum_probs=150.2

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCce-eEEEec---CCC-eEEEEeec--CCCCCeEEEEecCC
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPE-DIAWHP---QGN-SLFSAHTA--DSGDSQISVLNLNK  309 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~~---~~~-~l~s~~~~--~~~d~~i~vwd~~~  309 (540)
                      ..++.++.|+.|.-+|..+++............  +.  .+. ......   +|+ .++++...  .+.++.|..+|..+
T Consensus       118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~--~~--~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t  193 (582)
T 1flg_A          118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGA--GY--TMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT  193 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECSCGGG--TC--BCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCc--Cc--ccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence            357777889999999999998776654321100  00  011 111121   233 55554100  01378999999998


Q ss_pred             CCCceeEEeecC---------------CCC--------------------cccceeEEEEeCCCCCEEEEEec-------
Q 009203          310 TKGRACVTFLDD---------------KPH--------------------VKGIINSIIFLPWENPCFATGGS-------  347 (540)
Q Consensus       310 ~~~~~~~~~~~~---------------~~~--------------------~~~~v~~~~~~p~~~~~l~s~~~-------  347 (540)
                      ++..........               ...                    ....-..+++.| ...+++.+..       
T Consensus       194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~  272 (582)
T 1flg_A          194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNT  272 (582)
T ss_dssp             CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCG
T ss_pred             CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccC
Confidence            853222211000               000                    000012456777 5666666653       


Q ss_pred             -------------C----CcEEEEecCCCCCccccceeeccc-----CCcceeEEEec-cCCC---EEEEEeCCCeEEEE
Q 009203          348 -------------D----HAVVLWSERDAEDSWKPKALHRNL-----HSSAVMGVAGM-QQKQ---IVLSAGADKRIIGF  401 (540)
Q Consensus       348 -------------d----g~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~l~~s-~~~~---~l~~~~~dg~i~iw  401 (540)
                                   |    +.|..+|..+++..|..+......     ...++. +... .+|+   .++.++.+|.++++
T Consensus       273 ~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~l  351 (582)
T 1flg_A          273 WARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVV  351 (582)
T ss_dssp             GGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEE
T ss_pred             cccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEE
Confidence                         2    589999999999876554321110     111121 1221 4674   78889999999999


Q ss_pred             ECCCCCeeeeeccCcc---EE-------------------------------------------EEeecCCCCCceEEEE
Q 009203          402 DAGVGRADFKHQIESK---CM-------------------------------------------SVLPNPCDFNLFMVQT  435 (540)
Q Consensus       402 d~~~~~~~~~~~~~~~---~~-------------------------------------------~~~~~~~~~~~~~l~~  435 (540)
                      |..+|+.+........   ..                                           .++++|...  .+++.
T Consensus       352 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g--~~yv~  429 (582)
T 1flg_A          352 DRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG--LFYVP  429 (582)
T ss_dssp             ETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC--CEEEE
T ss_pred             ECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC--EEEEe
Confidence            9999998765433210   00                                           112233221  12221


Q ss_pred             E--------------------------------cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEE
Q 009203          436 G--------------------------------TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT  483 (540)
Q Consensus       436 ~--------------------------------~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  483 (540)
                      .                                ..+|.|..||+.+++.......   .     .++..-.....+.+++
T Consensus       430 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~---~-----~~~~~g~~~tagglvf  501 (582)
T 1flg_A          430 ANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE---H-----LPLWAGVLATAGNLVF  501 (582)
T ss_dssp             EECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE---S-----SCCCSCCEEETTTEEE
T ss_pred             chhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC---C-----CCCcccceEeCCCEEE
Confidence            1                                1357899999998875433211   0     1111111122467888


Q ss_pred             EEeCCCcEEEEeccCCCCcccccccccccce-eEEEEcCCCC-EEEEE
Q 009203          484 SGSADPVIHLFDIRYSANKPSQSIRAHQKRV-FKAVWHYSHP-LLISI  529 (540)
Q Consensus       484 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i-~~l~~s~~~~-~l~s~  529 (540)
                      .|+.||.++.||..+  ++.+-.+....+.+ .-+.|..+|+ |+++.
T Consensus       502 ~g~~dg~l~A~D~~t--G~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          502 TGTGDGYFKAFDAKS--GKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EECCCCcEEEEECCC--CCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            899999999999998  77777666433221 2266667886 44444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.50  E-value=6.4e-05  Score=73.66  Aligned_cols=246  Identities=6%  Similarity=-0.022  Sum_probs=139.3

Q ss_pred             CceEEEEEecC--CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC--
Q 009203          224 RKLRSLSLNPV--NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD--  299 (540)
Q Consensus       224 ~~V~~l~~spd--~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d--  299 (540)
                      ....+|+|+|+  ++.++++-.. +.|+.++..++... .+.        ........++|+++|+++++.    ..+  
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~-~~~--------~~~~~P~giavd~dG~lyVad----~~~~~  204 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVD-IKT--------TNIGQCADVNFTLNGDMVVVD----DQSSD  204 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEE-EEC--------CCCSCEEEEEECTTCCEEEEE----CCSCT
T ss_pred             CCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEE-Eee--------cCCCCccEEEECCCCCEEEEc----CCCCc
Confidence            45679999983  3555554333 88999998765432 221        123447899999999944443    211  


Q ss_pred             -C-eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          300 -S-QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       300 -~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                       . .+...+...+...  ...+..    ......++++|.++.++++-..++.|+.+|..++...   ..+...+.....
T Consensus       205 ~~~gv~~~~~~~~~~~--~~~~~~----~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~---~~~~~~~~~~~~  275 (433)
T 4hw6_A          205 TNTGIYLFTRASGFTE--RLSLCN----ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT---EEEVMMDTKGSN  275 (433)
T ss_dssp             TSEEEEEECGGGTTCC--EEEEEE----CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE---EEEEECSCCSSC
T ss_pred             ccceEEEEECCCCeec--cccccc----cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE---EEEeccCCCCCc
Confidence             1 2333443322110  011111    1336678899856666666666788999999866521   112111222233


Q ss_pred             eEEEeccCCCEEEE-EeCCCeEEEEECC--CCCee----e-ee-cc------------CccEEEEee---------cCCC
Q 009203          378 MGVAGMQQKQIVLS-AGADKRIIGFDAG--VGRAD----F-KH-QI------------ESKCMSVLP---------NPCD  427 (540)
Q Consensus       378 ~~l~~s~~~~~l~~-~~~dg~i~iwd~~--~~~~~----~-~~-~~------------~~~~~~~~~---------~~~~  427 (540)
                      ..++|+|+|+.|+. -...+.|+.++..  ++...    . .. ..            -.....+++         .+.+
T Consensus       276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g  355 (433)
T 4hw6_A          276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY  355 (433)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC
Confidence            47999999995554 4557889998865  23211    1 10 00            112445666         3433


Q ss_pred             CCceEEEEEcCCCeEEEEECCCCcceeeeecccc-----------ccCccccCeEEEEEc-CCCCEEEEEeCCCcEEEEe
Q 009203          428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ-----------ESSESQSALINQSWS-PDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~s-p~g~~l~sg~~dg~i~iwd  495 (540)
                         .++++-...+.|+.++.. +. .....+...           .....-.....|+++ ++|.++++-..++.|+.++
T Consensus       356 ---~lyvaD~~n~~I~~~~~~-G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          356 ---DFYFCDRDSHTVRVLTPE-GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             ---EEEEEETTTTEEEEECTT-SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             ---cEEEEECCCCEEEEECCC-CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence               567777778899999853 32 222221100           001112357889999 6777777766778888887


Q ss_pred             cc
Q 009203          496 IR  497 (540)
Q Consensus       496 ~~  497 (540)
                      ++
T Consensus       431 ~e  432 (433)
T 4hw6_A          431 PE  432 (433)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.50  E-value=0.00029  Score=67.92  Aligned_cols=238  Identities=10%  Similarity=-0.043  Sum_probs=143.5

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      .-+|.+..+ .+.++++  ....|+..++....... +.        .....+..++|++.+..|+.+   +...+.|..
T Consensus        78 ~~~C~~~~~-~~~l~~~--~~~~I~~i~~~~~~~~~-~~--------~~~~~~~gl~~d~~~~~ly~~---D~~~~~I~r  142 (386)
T 3v65_B           78 RRSCKALGP-EPVLLFA--NRIDIRQVLPHRSEYTL-LL--------NNLENAIALDFHHRRELVFWS---DVTLDRILR  142 (386)
T ss_dssp             SSCEEECSS-CCEEEEE--CBSCEEEECTTSCCCEE-EE--------CSCSCEEEEEEETTTTEEEEE---ETTTTEEEE
T ss_pred             CCeECCccc-cceeEee--cCccceeeccCCCcEEE-Ee--------cCCCccEEEEEecCCCeEEEE---eCCCCcEEE
Confidence            345666555 2443333  33568888887654322 21        112347789999866655544   167889999


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  384 (540)
                      +++....   ....+..   .......+++.+..+.++++-...+.|.+.++.....    ..+. .........+++.|
T Consensus       143 ~~~~g~~---~~~~~~~---~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~----~~l~-~~~l~~P~giavdp  211 (386)
T 3v65_B          143 ANLNGSN---VEEVVST---GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR----KVLL-WQSLEKPRAIALHP  211 (386)
T ss_dssp             EETTSCC---EEEEECS---SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC----EEEE-CSSCSCEEEEEEET
T ss_pred             EecCCCC---cEEEEeC---CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce----EEee-cCCCCCCcEEEEEc
Confidence            9988542   2222221   1234678899874566666666678899999876542    2222 22335678999998


Q ss_pred             CCCEEEEEe-CC-CeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecccc
Q 009203          385 QKQIVLSAG-AD-KRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ  461 (540)
Q Consensus       385 ~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~  461 (540)
                      .+..|+... .. +.|..+++......... ..-.....++++|.+.  .++++-+..+.|..+|+........ +    
T Consensus       212 ~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~--~lY~aD~~~~~I~~~d~dG~~~~~~-~----  284 (386)
T 3v65_B          212 MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR--RMYWVDAKHHVIERANLDGSHRKAV-I----  284 (386)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGT--EEEEEETTTTEEEEECTTSCSCEEE-E----
T ss_pred             CCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCC--EEEEEECCCCEEEEEeCCCCeeEEE-E----
Confidence            766655554 34 68999998754332222 2234567888887543  4566667778999999875432211 1    


Q ss_pred             ccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       462 ~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                        ........++++. .+.++++....+.|..++..+
T Consensus       285 --~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~  318 (386)
T 3v65_B          285 --SQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFT  318 (386)
T ss_dssp             --CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             --ECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCC
Confidence              1123356778883 455666666778888888544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.50  E-value=0.00016  Score=77.06  Aligned_cols=281  Identities=10%  Similarity=0.024  Sum_probs=164.9

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccc--cCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD--CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~--~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      ...|.++...++ |. |..|+.++-|..|+....... .+.....  .........|.++...++|.+.+ |    +.++
T Consensus       312 ~~~v~~i~~D~~-g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-g----t~~~  383 (781)
T 3v9f_A          312 NASARYIFQDSF-NN-IWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDGQGKLWI-G----TDGG  383 (781)
T ss_dssp             SSCEEEEEECSS-CC-EEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECTTSCEEE-E----EBSS
T ss_pred             CCeEEEEEEeCC-CC-EEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEEcCCCCEEE-E----eCCC
Confidence            467999999885 55 556676777888887754421 1211000  00011235688898888776544 4    4556


Q ss_pred             eEEEEecCCCCCceeEEeecC-CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeec-ccCCccee
Q 009203          301 QISVLNLNKTKGRACVTFLDD-KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHR-NLHSSAVM  378 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~  378 (540)
                      -|..||..++    ....+.. .......|.++...+ ++.+ ..|+.++-|..+|..+++.    ..+.. ......|.
T Consensus       384 Gl~~~~~~~~----~~~~~~~~~~~~~~~v~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~~----~~~~~~~~~~~~v~  453 (781)
T 3v9f_A          384 GINVFENGKR----VAIYNKENRELLSNSVLCSLKDS-EGNL-WFGTYLGNISYYNTRLKKF----QIIELEKNELLDVR  453 (781)
T ss_dssp             CEEEEETTEE----EEECC-----CCCSBEEEEEECT-TSCE-EEEETTEEEEEECSSSCEE----EECCSTTTCCCCEE
T ss_pred             cEEEEECCCC----eEEEccCCCCCCCcceEEEEECC-CCCE-EEEeccCCEEEEcCCCCcE----EEeccCCCCCCeEE
Confidence            6888887653    1221110 011235688998876 6654 4567667799999877652    22211 11346789


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc------CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI------ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      ++...++|.+.+ |+. +-|.+||..+++.......      ...+.++..++.+    .|..|+.++.+..||..+...
T Consensus       454 ~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~  527 (781)
T 3v9f_A          454 VFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG----RFWIGTFGGGVGIYTPDMQLV  527 (781)
T ss_dssp             EEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC----CEEEEESSSCEEEECTTCCEE
T ss_pred             EEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC----CEEEEEcCCCEEEEeCCCCeE
Confidence            998887776544 555 5688999887665332211      3467788877766    344555545588888876542


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccc-cccceeEEEEcCCCCEEEEEEc
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      ..  +.....  -....|.++..+++|.+.++. .+|.|..||..+..........+ ....|.++...++|.+.+++ .
T Consensus       528 ~~--~~~~~~--l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~  601 (781)
T 3v9f_A          528 RK--FNQYEG--FCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-N  601 (781)
T ss_dssp             EE--ECTTTT--CSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-S
T ss_pred             EE--ccCCCC--CCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-C
Confidence            21  111111  124578999999998866554 46754888887532111111111 12367889998888866654 4


Q ss_pred             CC
Q 009203          532 DL  533 (540)
Q Consensus       532 dg  533 (540)
                      +|
T Consensus       602 ~G  603 (781)
T 3v9f_A          602 TG  603 (781)
T ss_dssp             SC
T ss_pred             Cc
Confidence            55

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.49  E-value=0.00013  Score=74.37  Aligned_cols=209  Identities=10%  Similarity=0.005  Sum_probs=112.8

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCC-ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRW-PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~-V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      +.+++ ++.++.|.-+|..+++.+.++.............. ...+++  .+..++.+    +.++.|..+|..+++...
T Consensus        69 g~vyv-~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~----t~dg~l~AlD~~TG~~~W  141 (582)
T 1flg_A           69 GVIYV-TASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFG----TLDASVVALNKNTGKVVW  141 (582)
T ss_dssp             TEEEE-EETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEE----ETTTEEEEEESSSCCEEE
T ss_pred             CEEEE-EcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEE----eCCCEEEEEECCCCCEEe
Confidence            44444 44433488888888887766643221100000000 012233  24566776    789999999999984322


Q ss_pred             eEEeecCCCCccccee-EEEEeC--CCCC-EEEEEe------cCCcEEEEecCCCCCccccceeec--------------
Q 009203          315 CVTFLDDKPHVKGIIN-SIIFLP--WENP-CFATGG------SDHAVVLWSERDAEDSWKPKALHR--------------  370 (540)
Q Consensus       315 ~~~~~~~~~~~~~~v~-~~~~~p--~~~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~--------------  370 (540)
                      ....-.. . ....+. ...+..  .+++ .+++++      .++.|+-+|..+++.+|.......              
T Consensus       142 ~~~~~~~-~-~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g  219 (582)
T 1flg_A          142 KKKFADH-G-AGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTG  219 (582)
T ss_dssp             EEECSCG-G-GTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESS
T ss_pred             eecCCCC-C-cCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccc
Confidence            2221110 0 000011 111111  1233 555554      378999999999998775432100              


Q ss_pred             -c---------------------cCCcceeEEEeccCCCEEEEEeC--------------------C----CeEEEEECC
Q 009203          371 -N---------------------LHSSAVMGVAGMQQKQIVLSAGA--------------------D----KRIIGFDAG  404 (540)
Q Consensus       371 -~---------------------~~~~~v~~l~~s~~~~~l~~~~~--------------------d----g~i~iwd~~  404 (540)
                       .                     +....-..+++.|+..+++.++.                    |    +.|..+|..
T Consensus       220 ~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~  299 (582)
T 1flg_A          220 DVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPS  299 (582)
T ss_dssp             CTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTT
T ss_pred             ccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCC
Confidence             0                     00001124567777778877663                    2    589999999


Q ss_pred             CCCeeeeeccCcc----------EEEEeec-CCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          405 VGRADFKHQIESK----------CMSVLPN-PCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       405 ~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      +|+.+..++....          ..-+... .++....+++.++.+|.++++|..+++..
T Consensus       300 TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  359 (582)
T 1flg_A          300 SGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ  359 (582)
T ss_dssp             TCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence            9999876543211          1111111 22211137888999999999999988754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.48  E-value=0.00029  Score=66.94  Aligned_cols=232  Identities=11%  Similarity=-0.013  Sum_probs=136.8

Q ss_pred             eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC
Q 009203          278 EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER  357 (540)
Q Consensus       278 ~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~  357 (540)
                      +|.+..++ .+|+.+     ....|+..++...   ........    ...+..++|++.++.++++-...+.|..+++.
T Consensus        37 ~C~~~~~~-~~ll~~-----~~~~I~~i~~~g~---~~~~~~~~----~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~  103 (349)
T 3v64_C           37 SCKALGPE-PVLLFA-----NRIDIRQVLPHRS---EYTLLLNN----LENAIALDFHHRRELVFWSDVTLDRILRANLN  103 (349)
T ss_dssp             CEEESSSC-CEEEEE-----CBSCEEEECTTSC---CEEEEECS----CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cccccccC-ceeEee-----cccceEEEeCCCC---eeEEeecC----CCceEEEEEeccccEEEEEeccCCceEEEecC
Confidence            34444453 355553     4456888888753   22222322    23488999998456566666677889999998


Q ss_pred             CCCCccccceeecccCCcceeEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEE
Q 009203          358 DAEDSWKPKALHRNLHSSAVMGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQT  435 (540)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~  435 (540)
                      +...    ..+.. ........+++.+.+ .++++-...+.|.++++......... ..-.....++++|.+.  .++++
T Consensus       104 g~~~----~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g--~ly~t  176 (349)
T 3v64_C          104 GSNV----EEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--TIYWT  176 (349)
T ss_dssp             SCSC----EEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTT--EEEEE
T ss_pred             CCCc----eEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcC--eEEEe
Confidence            7652    22211 122446788998754 45555566789999998754432222 2234567888888552  45555


Q ss_pred             EcCC-CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccccccccc
Q 009203          436 GTPG-RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSIRAHQKR  513 (540)
Q Consensus       436 ~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~h~~~  513 (540)
                      -... +.|..+++........       ....-.....++|+|++..|..+ ...+.|..++++..  .....+......
T Consensus       177 d~~~~~~I~r~~~dG~~~~~~-------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~--~~~~~~~~~~~~  247 (349)
T 3v64_C          177 DWGNTPRIEASSMDGSGRRII-------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRKAVISQGLPH  247 (349)
T ss_dssp             ECSSSCEEEEEETTSCSCEES-------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECSSCSS
T ss_pred             ccCCCCEEEEEeCCCCCcEEE-------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC--ceEEEEeCCCCC
Confidence            5555 8899999875432211       11223457899999876665554 45678999998742  111112222334


Q ss_pred             eeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          514 VFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       514 i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ..+|++ ..+.++++-...+.|..++
T Consensus       248 P~giav-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          248 PFAITV-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             EEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             ceEEEE-ECCEEEEecCCCCeEEEEE
Confidence            567777 3444555555556665543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=4.9e-05  Score=74.45  Aligned_cols=242  Identities=8%  Similarity=0.047  Sum_probs=140.6

Q ss_pred             CCceeEEEec-CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CC---
Q 009203          275 RWPEDIAWHP-QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DH---  349 (540)
Q Consensus       275 ~~V~~~~~~~-~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg---  349 (540)
                      .....++|+| ++..|+++    ...+.|+.+|+..+   .......    .......|+|++ +++.|+.+.. ++   
T Consensus       137 ~~P~~lavdp~~~g~Lyv~----d~~~~I~~id~~~~---~v~~~~~----~~~~P~~ia~d~-~G~~lyvad~~~~~~~  204 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLV----GEQHPTRLIDFEKE---YVSTVYS----GLSKVRTICWTH-EADSMIITNDQNNNDR  204 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEE----EBTEEEEEEETTTT---EEEEEEC----CCSCEEEEEECT-TSSEEEEEECCSCTTS
T ss_pred             CCCCEEEECCCCCCeEEEE----eCCCcEEEEECCCC---EEEEEec----CCCCcceEEEeC-CCCEEEEEeCCCCccc
Confidence            3467899998 45556665    33388999999864   2222222    134588999999 8885555443 22   


Q ss_pred             -cEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecC
Q 009203          350 -AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNP  425 (540)
Q Consensus       350 -~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~  425 (540)
                       .+.+++. .+.... ...+.   ......+++++| +|.++++-..++.|..||...+.....  .........++++|
T Consensus       205 ~~v~~~~~-~g~~~~-~~~l~---~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p  279 (430)
T 3tc9_A          205 PNNYILTR-ESGFKV-ITELT---KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP  279 (430)
T ss_dssp             EEEEEEEG-GGTSCS-EEEEE---ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT
T ss_pred             ceEEEEeC-CCceee-eeeec---cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC
Confidence             2333443 332210 01121   123467889999 677777766788999999987654222  22234567899999


Q ss_pred             CCCCceEEEEEcCCCeEEEEECCCCcce----eeeecc---cccc-----CccccCeE-EEEEc--------CCCCEEEE
Q 009203          426 CDFNLFMVQTGTPGRQLRLYDIRLRQTE----IHAFGW---KQES-----SESQSALI-NQSWS--------PDGLYITS  484 (540)
Q Consensus       426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~----~~~~~~---~~~~-----~~~~~~v~-~~~~s--------p~g~~l~s  484 (540)
                      ++.  .++++-...+.|..++.......    ....+.   ....     ...-.... .++..        ++|.++++
T Consensus       280 dG~--~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva  357 (430)
T 3tc9_A          280 SGN--YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC  357 (430)
T ss_dssp             TSS--EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE
T ss_pred             CCC--EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE
Confidence            872  25666677889999887642110    111110   0000     00112234 55653        45666666


Q ss_pred             EeCCCcEEEEeccCCCCccccccccc------------------ccceeEEEEcCC-CCEEEEEEcCCcEEEEe
Q 009203          485 GSADPVIHLFDIRYSANKPSQSIRAH------------------QKRVFKAVWHYS-HPLLISISSDLNIGLHK  539 (540)
Q Consensus       485 g~~dg~i~iwd~~~~~~~~~~~~~~h------------------~~~i~~l~~s~~-~~~l~s~~~dg~v~iw~  539 (540)
                      -...+.|+.++..   +... ++.+.                  -.....|+++++ +.++++-..+..|+.++
T Consensus       358 D~~n~~I~~i~~~---G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  427 (430)
T 3tc9_A          358 DRENHCIRILTPQ---GRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG  427 (430)
T ss_dssp             EGGGTEEEEECTT---SEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             ECCCcEEEEECCC---CcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence            6677888888843   3221 11111                  125789999994 66667666778888765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.45  E-value=6.5e-05  Score=66.09  Aligned_cols=187  Identities=9%  Similarity=0.040  Sum_probs=116.1

Q ss_pred             cceeEEEEeCCCCCEEEEEecCC--cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203          327 GIINSIIFLPWENPCFATGGSDH--AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG  404 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~  404 (540)
                      .....+.|++  +.++.+.+.+|  .|+.+|+.+++..   ..+....+ ..-..+++. ++.+....-.++.+.+||..
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~---~~~~l~~~-~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRIL---QRAEVPPP-YFGAGIVAW-RDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEE---EEEECCTT-CCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEE---EEEeCCCC-cceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence            4577899985  55666666654  8999999999852   22221111 111234443 23444444568899999999


Q ss_pred             CCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc-cccCeEEEEEcCCCCEEE
Q 009203          405 VGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE-SQSALINQSWSPDGLYIT  483 (540)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~  483 (540)
                      +.+.+..+........++...     ..|+.+..++.|.++|..+.+..... ...  ..+ --..++.+.|. +|...+
T Consensus        94 tl~~~~ti~~~~~Gwglt~dg-----~~L~vSdgs~~l~~iDp~t~~~~~~I-~V~--~~g~~~~~lNeLe~~-~G~lya  164 (243)
T 3mbr_X           94 TLTPRARFRYPGEGWALTSDD-----SHLYMSDGTAVIRKLDPDTLQQVGSI-KVT--AGGRPLDNLNELEWV-NGELLA  164 (243)
T ss_dssp             TTEEEEEEECSSCCCEEEECS-----SCEEEECSSSEEEEECTTTCCEEEEE-ECE--ETTEECCCEEEEEEE-TTEEEE
T ss_pred             cCcEEEEEeCCCCceEEeeCC-----CEEEEECCCCeEEEEeCCCCeEEEEE-EEc--cCCcccccceeeEEe-CCEEEE
Confidence            999888776665555666543     23444455889999999987643322 110  001 01245566665 676665


Q ss_pred             EEeCCCcEEEEeccCCCCcccccccc-------------cccceeEEEEcCCCCEEEEEEc
Q 009203          484 SGSADPVIHLFDIRYSANKPSQSIRA-------------HQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       484 sg~~dg~i~iwd~~~~~~~~~~~~~~-------------h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      ....+..|.+.|..+  ++.+..+..             -....+.|+|+|+++.|+..+.
T Consensus       165 nvw~s~~I~vIDp~t--G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          165 NVWLTSRIARIDPAS--GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EETTTTEEEEECTTT--CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EECCCCeEEEEECCC--CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            555678899999988  555554431             1235689999998876666653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.44  E-value=0.00035  Score=65.37  Aligned_cols=224  Identities=10%  Similarity=-0.058  Sum_probs=129.1

Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      ....|+..|+.+...   ...+..    ...+.+++|++.++.++++-..++.|..+++.+.........+. .......
T Consensus         8 ~~~~I~~i~~~~~~~---~~~~~~----~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p   79 (316)
T 1ijq_A            8 NRHEVRKMTLDRSEY---TSLIPN----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAP   79 (316)
T ss_dssp             CBSSEEEEETTSCCC---EEEECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCC
T ss_pred             CCCeEEEEECCCcce---EehhcC----CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-eCCCCCc
Confidence            456789999987532   233332    24578999998445566666667899999987621000012221 1122456


Q ss_pred             eEEEeccCC-CEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCC-CeEEEEECCCCccee
Q 009203          378 MGVAGMQQK-QIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPG-RQLRLYDIRLRQTEI  454 (540)
Q Consensus       378 ~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~  454 (540)
                      ..+++.+.+ +++++-...+.|.++|+.......... .......++.+|.+.  .++++.... +.|..+++.......
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g--~ly~~d~~~~~~I~~~~~dG~~~~~  157 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDIYS  157 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--EEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC--EEEEEccCCCCeEEEEcCCCCCeEE
Confidence            788998654 445555667899999987544322222 234667888887552  344444433 789888886443211


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      . .      ...-.....+++++++..|+.+ +..+.|..+|++....+.+............|++. .+.++++....+
T Consensus       158 ~-~------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          158 L-V------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             E-E------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             E-E------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence            1 0      1123467899999977666555 45678999999842222222111122345677774 355555555666


Q ss_pred             cEEEEe
Q 009203          534 NIGLHK  539 (540)
Q Consensus       534 ~v~iw~  539 (540)
                      .|..++
T Consensus       230 ~V~~~~  235 (316)
T 1ijq_A          230 AIFSAN  235 (316)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            776654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.44  E-value=0.00015  Score=71.00  Aligned_cols=242  Identities=6%  Similarity=0.005  Sum_probs=143.8

Q ss_pred             CCceeEEEecC--CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC---C
Q 009203          275 RWPEDIAWHPQ--GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD---H  349 (540)
Q Consensus       275 ~~V~~~~~~~~--~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d---g  349 (540)
                      .....++|+|+  +..|+.+    ...+.|+.+|..++   .......    ......+++|++ +++++++....   .
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~----D~~~~I~~id~~~g---~v~~~~~----~~~~P~giavd~-dG~lyVad~~~~~~~  206 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWV----GQRDAFRHVDFVNQ---YVDIKTT----NIGQCADVNFTL-NGDMVVVDDQSSDTN  206 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEE----CBTSCEEEEETTTT---EEEEECC----CCSCEEEEEECT-TCCEEEEECCSCTTS
T ss_pred             CCCceEEEccccCCCEEEEE----eCCCCEEEEECCCC---EEEEeec----CCCCccEEEECC-CCCEEEEcCCCCccc
Confidence            44678999984  4456655    44489999999765   2233322    134588999999 88855554321   1


Q ss_pred             -cEEEEecCCCCCccccceeecccCCcceeEEEecc-CCCEEEEEeCCCeEEEEECCCCCee-ee--eccCccEEEEeec
Q 009203          350 -AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRAD-FK--HQIESKCMSVLPN  424 (540)
Q Consensus       350 -~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~-~~--~~~~~~~~~~~~~  424 (540)
                       .+..++...+.. . ...+.   .......++++| +|.++++-..++.|+.+|..++... ..  .........++++
T Consensus       207 ~gv~~~~~~~~~~-~-~~~~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~d  281 (433)
T 4hw6_A          207 TGIYLFTRASGFT-E-RLSLC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWH  281 (433)
T ss_dssp             EEEEEECGGGTTC-C-EEEEE---ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEEC
T ss_pred             ceEEEEECCCCee-c-ccccc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEe
Confidence             233333322210 0 01111   234567789999 6776666667889999999877652 11  1222233468899


Q ss_pred             CCCCCceEEEEEcCCCeEEEEECCC--Ccc--eeeeecc---ccc-----cCccccCeEEEEE---------cCCCCEEE
Q 009203          425 PCDFNLFMVQTGTPGRQLRLYDIRL--RQT--EIHAFGW---KQE-----SSESQSALINQSW---------SPDGLYIT  483 (540)
Q Consensus       425 ~~~~~~~~l~~~~~dg~v~i~d~~~--~~~--~~~~~~~---~~~-----~~~~~~~v~~~~~---------sp~g~~l~  483 (540)
                      |++.  .++++-...+.|+.+++..  +..  .....+.   ...     ....-.....+++         .++|.+++
T Consensus       282 pdG~--~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyv  359 (433)
T 4hw6_A          282 PTGD--WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYF  359 (433)
T ss_dssp             TTSS--EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred             CCCC--EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEE
Confidence            9872  2556667778999988763  211  0111110   000     0011234778999         77888888


Q ss_pred             EEeCCCcEEEEeccCCCCcccccccc------------------cccceeEEEEc-CCCCEEEEEEcCCcEEEEe
Q 009203          484 SGSADPVIHLFDIRYSANKPSQSIRA------------------HQKRVFKAVWH-YSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       484 sg~~dg~i~iwd~~~~~~~~~~~~~~------------------h~~~i~~l~~s-~~~~~l~s~~~dg~v~iw~  539 (540)
                      +-...+.|+.++..   +... ++.+                  .-.....|+++ ++|.++++-..++.|+.++
T Consensus       360 aD~~n~~I~~~~~~---G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          360 CDRDSHTVRVLTPE---GRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             EETTTTEEEEECTT---SEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             EECCCCEEEEECCC---CCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence            77778899999854   3221 1111                  11246889999 6777777777788888775

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=0.00055  Score=72.93  Aligned_cols=288  Identities=11%  Similarity=0.051  Sum_probs=164.8

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ..|.++...++ +.+.+ |+.+ -+.+||..++.... +..............|.++...++|.+.+.     +..+-|.
T Consensus       211 ~~i~~i~~d~~-g~lwi-gt~~-Gl~~~d~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-----t~~~Gl~  281 (781)
T 3v9f_A          211 NDVRCIYKDTN-GNIWI-GTSK-GLALFNANTETFTN-FHNNPGNIHGALSSYIFSIKQLKDNKLWIA-----TELNGIM  281 (781)
T ss_dssp             SSEEEEEECTT-CCEEE-EETT-EEEEEETTTTEEEC------------CCCCEEEEEECTTSEEEEE-----ESSSCEE
T ss_pred             CceeEEEEcCC-CCEEE-EeCC-cHheECCCCCcEEE-EEcCCCccccccCceEEEEEECCCCCEEEE-----eCCCCeE
Confidence            56999998874 66544 4445 58889977653211 111000000112356888988888765554     4545688


Q ss_pred             EEecCCCCCceeEE-------eec-CCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee------
Q 009203          304 VLNLNKTKGRACVT-------FLD-DKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH------  369 (540)
Q Consensus       304 vwd~~~~~~~~~~~-------~~~-~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------  369 (540)
                      ++|..+........       ... ...-....|.++...+ ++. |-.|+.++-|..|+......    ..+.      
T Consensus       282 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~----~~~~~~~~~~  355 (781)
T 3v9f_A          282 ILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTF----HTWSYSPTQM  355 (781)
T ss_dssp             EEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSC----EEEC----CC
T ss_pred             EECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcc----eeeccCcccc
Confidence            88887642111110       000 0111235689998887 665 55677677799999876542    2221      


Q ss_pred             --cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee----ccCccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203          370 --RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH----QIESKCMSVLPNPCDFNLFMVQTGTPGRQLR  443 (540)
Q Consensus       370 --~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  443 (540)
                        .......|.++...++|.+ ..|+.++-|..||..++......    .....+.++..++.+    .|..|+.++.+.
T Consensus       356 ~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g----~lWigt~~~Gl~  430 (781)
T 3v9f_A          356 NESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG----NLWFGTYLGNIS  430 (781)
T ss_dssp             CSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS----CEEEEETTEEEE
T ss_pred             ccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC----CEEEEeccCCEE
Confidence              0113456899998877764 45666666889998765432211    123457777777665    455577777899


Q ss_pred             EEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---ccccceeEEEEc
Q 009203          444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AHQKRVFKAVWH  520 (540)
Q Consensus       444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~i~~l~~s  520 (540)
                      .||..++.......    . ......|.++..+++|.+.+. +. +-|..||..+..........   .....|.++...
T Consensus       431 ~~~~~~~~~~~~~~----~-~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d  503 (781)
T 3v9f_A          431 YYNTRLKKFQIIEL----E-KNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD  503 (781)
T ss_dssp             EECSSSCEEEECCS----T-TTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred             EEcCCCCcEEEecc----C-CCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence            99987654321110    0 113457899999888875554 44 45889998763222111111   113578999999


Q ss_pred             CCCCEEEEEEcCCcEEEEe
Q 009203          521 YSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       521 ~~~~~l~s~~~dg~v~iw~  539 (540)
                      ++|.+.+....+| |..|+
T Consensus       504 ~~g~lWigt~~~G-l~~~~  521 (781)
T 3v9f_A          504 SEGRFWIGTFGGG-VGIYT  521 (781)
T ss_dssp             TTCCEEEEESSSC-EEEEC
T ss_pred             CCCCEEEEEcCCC-EEEEe
Confidence            9988766554345 44443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.40  E-value=0.0018  Score=62.61  Aligned_cols=232  Identities=8%  Similarity=-0.056  Sum_probs=138.9

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC-ceeE
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG-RACV  316 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-~~~~  316 (540)
                      +|+.+. ...|+..++........+         .....+..++|++.+..|+.+   +...+.|..+++..... ....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~---------~~~~~~~~l~~d~~~~~lyws---D~~~~~I~~~~~~g~~~~~~~~  151 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHGVSSYD  151 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEE---------CSCSCEEEEEEETTTTEEEEE---ETTTTEEEEEEC------CCCE
T ss_pred             eeEEec-cceeEEEccCCcceeEec---------cccCcceEEeeeeccCceEEE---ecCCCeEEEEEcccCCCCCcce
Confidence            444444 357888888765432221         123457899999876655554   16678899999875210 0112


Q ss_pred             EeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC--
Q 009203          317 TFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA--  394 (540)
Q Consensus       317 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~--  394 (540)
                      ..+..   .......+++.+..+.++++-...+.|.+.++.....    ..+. .........|++.|.+..|+....  
T Consensus       152 ~~~~~---~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~----~~l~-~~~~~~P~~iavdp~~g~ly~td~~~  223 (400)
T 3p5b_L          152 TVISR---DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLF-RENGSKPRAIVVDPVHGFMYWTDWGT  223 (400)
T ss_dssp             EEECS---SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE----EEEE-ECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred             EEEeC---CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce----EEEE-eCCCCCcceEEEecccCeEEEEeCCC
Confidence            22221   1234788999874566666666778999999986542    2222 123345789999997666665543  


Q ss_pred             CCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEE
Q 009203          395 DKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ  473 (540)
Q Consensus       395 dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~  473 (540)
                      .+.|...++.......... .-.....+++++.+.  .+.++-...+.|..+|+.........     ..........++
T Consensus       224 ~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~--~lY~aD~~~~~I~~~d~dG~~~~~~~-----~~~~~l~~P~gl  296 (400)
T 3p5b_L          224 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNGGNRKTIL-----EDEKRLAHPFSL  296 (400)
T ss_dssp             SCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCCCEEEE-----ECSSTTSSEEEE
T ss_pred             CCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCC--EEEEEECCCCEEEEEeCCCCccEEEE-----eCCCCCCCCEEE
Confidence            3689999987544322222 235677888987653  45556667789999999764432211     111122345677


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          474 SWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       474 ~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ++. .+.++++-...+.|..+|..+
T Consensus       297 ~v~-~~~lywtd~~~~~V~~~~~~~  320 (400)
T 3p5b_L          297 AVF-EDKVFWTDIINEAIFSANRLT  320 (400)
T ss_dssp             EEE-TTEEEEEESSSCSEEEEESSS
T ss_pred             EEe-CCEEEEecCCCCeEEEEEcCC
Confidence            773 344555666778898888655

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.40  E-value=0.00029  Score=67.93  Aligned_cols=231  Identities=11%  Similarity=-0.028  Sum_probs=136.7

Q ss_pred             eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC
Q 009203          279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD  358 (540)
Q Consensus       279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  358 (540)
                      +.+..+ ..+|+.+     ....|+.+++.....   ......    ...+..++|++.++.++++-...+.|+.+++.+
T Consensus        81 C~~~~~-~~~l~~~-----~~~~I~~i~~~~~~~---~~~~~~----~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g  147 (386)
T 3v65_B           81 CKALGP-EPVLLFA-----NRIDIRQVLPHRSEY---TLLLNN----LENAIALDFHHRRELVFWSDVTLDRILRANLNG  147 (386)
T ss_dssp             EEECSS-CCEEEEE-----CBSCEEEECTTSCCC---EEEECS----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ECCccc-cceeEee-----cCccceeeccCCCcE---EEEecC----CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            444444 3355554     456788888876422   222322    234889999984566666666778899999987


Q ss_pred             CCCccccceeecccCCcceeEEEeccCCC-EEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEE
Q 009203          359 AEDSWKPKALHRNLHSSAVMGVAGMQQKQ-IVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTG  436 (540)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  436 (540)
                      ...    ..+.. ........+++.+.+. ++++-...+.|.++++.......... .-.....++.+|.+.  .++++-
T Consensus       148 ~~~----~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g--~ly~td  220 (386)
T 3v65_B          148 SNV----EEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--TIYWTD  220 (386)
T ss_dssp             CCE----EEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT--EEEEEE
T ss_pred             CCc----EEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC--eEEEec
Confidence            642    22211 1223457788887544 44555567789999987544322222 224567888887653  345555


Q ss_pred             cCC-CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccccccccce
Q 009203          437 TPG-RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSIRAHQKRV  514 (540)
Q Consensus       437 ~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~h~~~i  514 (540)
                      ... +.|..+++.........       ...-.....++|+|++..|+.+ +..+.|..++++..  .....+.......
T Consensus       221 ~~~~~~I~r~~~dG~~~~~~~-------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~--~~~~~~~~~~~~P  291 (386)
T 3v65_B          221 WGNTPRIEASSMDGSGRRIIA-------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS--HRKAVISQGLPHP  291 (386)
T ss_dssp             CSSSCEEEEEETTSCSCEEEE-------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC--SCEEEECSSCSSE
T ss_pred             cCCCCEEEEEeCCCCCcEEEE-------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC--eeEEEEECCCCCc
Confidence            555 78999998754432211       1123357899999876665544 45678999998742  2111222223345


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          515 FKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       515 ~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .+|++ ..+.++++....+.|..++
T Consensus       292 ~giav-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          292 FAITV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             eEEEE-ECCEEEEeeCCCCeEEEEE
Confidence            77777 3445555555566666654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.39  E-value=7.2e-06  Score=85.45  Aligned_cols=245  Identities=13%  Similarity=-0.001  Sum_probs=130.9

Q ss_pred             eEEEec-CCCeEEEEeecCCCCC-----------eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe
Q 009203          279 DIAWHP-QGNSLFSAHTADSGDS-----------QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG  346 (540)
Q Consensus       279 ~~~~~~-~~~~l~s~~~~~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  346 (540)
                      ++++.+ ++++++.|    +.+.           .+.+||..++.-.... .+..  .+.....++++.+ ++.+++.|+
T Consensus       190 ~~av~~~~g~l~v~G----G~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-~~~~--~~~~~~~~~~~~~-~g~lyv~GG  261 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWS----SYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-VTVT--KHDMFCPGISMDG-NGQIVVTGG  261 (656)
T ss_dssp             EEEEETTTTEEEEEE----ECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-EEEC--SCCCSSCEEEECT-TSCEEEECS
T ss_pred             eEEEEecCCEEEEEe----cccccccccCCCCeEEEEEEeCCCCcEEeCc-ccCC--CCCCccccccCCC-CCCEEEeCC
Confidence            677787 88888877    3221           6889999877432222 2211  1223344577777 899999998


Q ss_pred             c-CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CC-----CeEEEEECCCCCeeeeec-----c
Q 009203          347 S-DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-AD-----KRIIGFDAGVGRADFKHQ-----I  414 (540)
Q Consensus       347 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~~-----~  414 (540)
                      . +..+.+||..+...    ..+........-.+++..++|++++.|+ .+     ..+.+||..+++-.....     .
T Consensus       262 ~~~~~v~~yd~~t~~W----~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~  337 (656)
T 1k3i_A          262 NDAKKTSLYDSSSDSW----IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM  337 (656)
T ss_dssp             SSTTCEEEEEGGGTEE----EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG
T ss_pred             CCCCceEEecCcCCce----eECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccc
Confidence            4 45799999987652    1111111122223455667899999988 34     468999998765332210     0


Q ss_pred             CccEEEEeecCCCCCceEEEEEcCC---------CeEEEEECCCCcceeeeecccccc---CccccCeEEEEEcC-CCCE
Q 009203          415 ESKCMSVLPNPCDFNLFMVQTGTPG---------RQLRLYDIRLRQTEIHAFGWKQES---SESQSALINQSWSP-DGLY  481 (540)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~~~d---------g~v~i~d~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp-~g~~  481 (540)
                      ........+..++   ..++.|+.+         ..+..||..+..-.. ..+.....   ......-.++.|.. ++++
T Consensus       338 ~~~~~~~~~~~~~---~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~~~~~av~~~~~~~~i  413 (656)
T 1k3i_A          338 LTADKQGLYRSDN---HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDAMCGNAVMYDAVKGKI  413 (656)
T ss_dssp             CCCCTTGGGTTTC---SCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCCBTCEEEEEETTTTEE
T ss_pred             ccccccceeecCC---ceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCCCCCceEeccCCCCeE
Confidence            0000001111111   233444333         457788887654221 11100000   00011234455543 7888


Q ss_pred             EEEEeCCC-----------cEEEEeccCCCCcccccccccccc-eeEEEEcCCCCEEEEEEcC-----------CcEEEE
Q 009203          482 ITSGSADP-----------VIHLFDIRYSANKPSQSIRAHQKR-VFKAVWHYSHPLLISISSD-----------LNIGLH  538 (540)
Q Consensus       482 l~sg~~dg-----------~i~iwd~~~~~~~~~~~~~~h~~~-i~~l~~s~~~~~l~s~~~d-----------g~v~iw  538 (540)
                      ++.|+.++           .|.+||..+.....+..-..+... -.+++..|+|++++.||.+           ..+.+|
T Consensus       414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y  493 (656)
T 1k3i_A          414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY  493 (656)
T ss_dssp             EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred             EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE
Confidence            88887543           577888775221111100112222 2345667899999999865           457777


Q ss_pred             e
Q 009203          539 K  539 (540)
Q Consensus       539 ~  539 (540)
                      |
T Consensus       494 d  494 (656)
T 1k3i_A          494 V  494 (656)
T ss_dssp             E
T ss_pred             c
Confidence            6

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.36  E-value=0.0018  Score=60.49  Aligned_cols=225  Identities=8%  Similarity=-0.048  Sum_probs=134.1

Q ss_pred             ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC-ceeEEeecCCCC
Q 009203          246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG-RACVTFLDDKPH  324 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~  324 (540)
                      ..|+..++........+         .....+.+++|++.+..|+.+   +..++.|..+++..... ......+..   
T Consensus        10 ~~I~~i~~~~~~~~~~~---------~~~~~p~g~~~d~~~~~ly~~---D~~~~~I~~~~~~g~~~~~~~~~~~~~---   74 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHGVSSYDTVISR---   74 (316)
T ss_dssp             SSEEEEETTSCCCEEEE---------CSCSSEEEEEEETTTTEEEEE---ETTTTEEEEEEC--------CEEEECS---
T ss_pred             CeEEEEECCCcceEehh---------cCCCceEEEEEEeCCCEEEEE---ECCCCcEEEEECCCCCCCcccEEEEeC---
Confidence            46888888876543222         112346789999876655554   16678999999875100 011222221   


Q ss_pred             cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-C-CeEEEEE
Q 009203          325 VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-D-KRIIGFD  402 (540)
Q Consensus       325 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d-g~i~iwd  402 (540)
                      .-..+.++++.+.++.++++-...+.|.++++.....    ..+. .........+++.|.+..|+.+.. . +.|..++
T Consensus        75 ~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~----~~~~-~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~  149 (316)
T 1ijq_A           75 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (316)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             CCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce----EEEE-ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence            1134678999873555666666778999999876432    2222 123356789999986666555544 3 6899898


Q ss_pred             CCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE
Q 009203          403 AGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY  481 (540)
Q Consensus       403 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  481 (540)
                      +........ ...-.....+++++++.  .++++-+..+.|..+|+........ .    ..........++++. .+.+
T Consensus       150 ~dG~~~~~~~~~~~~~P~gla~d~~~~--~lY~~D~~~~~I~~~d~dg~~~~~~-~----~~~~~~~~P~giav~-~~~l  221 (316)
T 1ijq_A          150 LNGVDIYSLVTENIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNGGNRKTI-L----EDEKRLAHPFSLAVF-EDKV  221 (316)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEE-E----ECTTTTSSEEEEEEE-TTEE
T ss_pred             CCCCCeEEEEECCCCCceEEEEeccCC--EEEEEECCCCeEEEEecCCCceEEE-e----ecCCccCCcEEEEEE-CCEE
Confidence            864332211 12234677888887653  4556667778999999975432211 1    011112346778875 3555


Q ss_pred             EEEEeCCCcEEEEeccC
Q 009203          482 ITSGSADPVIHLFDIRY  498 (540)
Q Consensus       482 l~sg~~dg~i~iwd~~~  498 (540)
                      +++-...+.|..++..+
T Consensus       222 y~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          222 FWTDIINEAIFSANRLT  238 (316)
T ss_dssp             EEEETTTTEEEEEETTT
T ss_pred             EEEECCCCeEEEEeCCC
Confidence            66666678888888754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.35  E-value=5.3e-05  Score=77.15  Aligned_cols=277  Identities=8%  Similarity=0.021  Sum_probs=152.3

Q ss_pred             EEEecCCCc---EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEecCCCeEEEEeecCC------C
Q 009203          229 LSLNPVNEQ---LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHPQGNSLFSAHTADS------G  298 (540)
Q Consensus       229 l~~spd~~~---~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~~~~------~  298 (540)
                      ++++|+++.   .|+.++.|+.+..+|..+++...........  .+  ..+.+ .... ++ .++++    +      .
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~--~~--~~~~ssP~v~-~g-~V~vg----~~g~e~g~  180 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK--VG--STLTIAPYVV-KD-KVIIG----SSGAELGV  180 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG--GT--CBCCSCCEEE-TT-EEEEC----CBCGGGTC
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC--cc--ceeecCCEEE-CC-EEEEE----ecccccCC
Confidence            556443232   2777888999999999999877665322100  00  01111 1121 34 45554    3      3


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCC------C-------------------------cccce-eEEEEeCCCCCEEEEEe
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKP------H-------------------------VKGII-NSIIFLPWENPCFATGG  346 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~------~-------------------------~~~~v-~~~~~~p~~~~~l~s~~  346 (540)
                      ++.|..+|..+++............      .                         -.+.+ ..+++.+ ...+++.+.
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~  259 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT  259 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeC
Confidence            7999999999984322222211000      0                         00001 1456667 666777776


Q ss_pred             cC----------------CcEEEEecCCCCCccccceeeccc-----CCcceeEEEec-cCC---CEEEEEeCCCeEEEE
Q 009203          347 SD----------------HAVVLWSERDAEDSWKPKALHRNL-----HSSAVMGVAGM-QQK---QIVLSAGADKRIIGF  401 (540)
Q Consensus       347 ~d----------------g~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~l~~s-~~~---~~l~~~~~dg~i~iw  401 (540)
                      .+                +.|..+|..+++..|..+......     ...++. +... .+|   ..++.++.+|.++++
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l  338 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL  338 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence            54                379999999999876655432110     111121 2222 467   567778999999999


Q ss_pred             ECCCCCeeeeeccCc-------------c-E--------------------------EEEeecCCCCCceEEEEE-----
Q 009203          402 DAGVGRADFKHQIES-------------K-C--------------------------MSVLPNPCDFNLFMVQTG-----  436 (540)
Q Consensus       402 d~~~~~~~~~~~~~~-------------~-~--------------------------~~~~~~~~~~~~~~l~~~-----  436 (540)
                      |.++|+.+.......             . +                          ..++++|..   .++++.     
T Consensus       339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~---~~~yv~~~~~~  415 (599)
T 1w6s_A          339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR---ELFFMGINHIC  415 (599)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT---TEEEEEEECEE
T ss_pred             ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC---CEEEEeccccc
Confidence            999999876543211             0 0                          012233322   111110     


Q ss_pred             ----------------------------c------CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203          437 ----------------------------T------PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI  482 (540)
Q Consensus       437 ----------------------------~------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  482 (540)
                                                  +      ..|.|..||+.+++.......   .     .++.+-.+...+..+
T Consensus       416 ~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---~-----~~~~~g~~~tagg~v  487 (599)
T 1w6s_A          416 MDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---R-----FAVWGGTMATAGDLV  487 (599)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---S-----SCCCSBCEEETTTEE
T ss_pred             eeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---C-----CCccCcceEecCCEE
Confidence                                        1      357899999988875443210   0     111111122256788


Q ss_pred             EEEeCCCcEEEEeccCCCCcccccccccccc-eeEEEEcCCCC-EEEEEE
Q 009203          483 TSGSADPVIHLFDIRYSANKPSQSIRAHQKR-VFKAVWHYSHP-LLISIS  530 (540)
Q Consensus       483 ~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~-i~~l~~s~~~~-~l~s~~  530 (540)
                      +.++.||.++.||..+  ++.+-.++...+. ..-+.|..+|+ |+++.+
T Consensus       488 f~gt~dg~l~A~D~~t--G~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          488 FYGTLDGYLKARDSDT--GDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             EEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEECCCCeEEEEECCC--CCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence            8899999999999998  6766666533221 12355666886 454443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.34  E-value=0.00014  Score=64.87  Aligned_cols=202  Identities=11%  Similarity=0.027  Sum_probs=119.0

Q ss_pred             ccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC
Q 009203          326 KGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV  405 (540)
Q Consensus       326 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~  405 (540)
                      ...+..++|+|.++.++++...++.|...|.. ++.   ...+... .......|++.+++.++++.-.++.+.++++..
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v---~~~i~l~-g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL---IRTIPLD-FVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---EEEEECS-SCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---EEEEecC-CCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            34699999999444455667778889999998 553   2222222 235678899998888777766778899998765


Q ss_pred             CCee---eee-------ccCccEEEEeecCCCCCceEEEEEcCCC-eEEEEECCCCcceeeeecccc-ccCccccCeEEE
Q 009203          406 GRAD---FKH-------QIESKCMSVLPNPCDFNLFMVQTGTPGR-QLRLYDIRLRQTEIHAFGWKQ-ESSESQSALINQ  473 (540)
Q Consensus       406 ~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~v~i~d~~~~~~~~~~~~~~~-~~~~~~~~v~~~  473 (540)
                      ...+   ...       ......-.++++|.+.  .++++.-.+. .|+.|+-.............. ....+...+.++
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~--~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH--TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT--EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCC--EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            4421   111       1123346888988763  2333333333 455555100111111110000 001123457899


Q ss_pred             EEcCC-CCEEEEEeCCCcEEEEeccCCCCccccccccc---------ccceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          474 SWSPD-GLYITSGSADPVIHLFDIRYSANKPSQSIRAH---------QKRVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       474 ~~sp~-g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h---------~~~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      +++|. +.+++....+..|.++|..   ++++..+.-.         -...-.|+|.++|++.++ ++...++++
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~---g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV---GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT---CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC---CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            99995 5566677778889999987   4444433211         124578999999985555 666655554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.34  E-value=0.0021  Score=60.76  Aligned_cols=262  Identities=10%  Similarity=0.066  Sum_probs=155.2

Q ss_pred             CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203          245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH  324 (540)
Q Consensus       245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  324 (540)
                      +..|.|-|+..+..+.+....           --+.-.+|..+.||.-     ...+++|||+++.   ..+....-   
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~-----------AdsAIMnP~~~iiALr-----ag~~lQiFnle~K---~klks~~~---  104 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALK-----AGKTLQIFNIEMK---SKMKAHTM---  104 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECC-----------CSEEEECSSSSCEEEE-----ETTEEEEEETTTT---EEEEEEEC---
T ss_pred             CCeEEEEECCCCCcceecccc-----------cceeeeCCCCcEEEEe-----cCCeEEEEchHHh---hhhcceec---
Confidence            347999999887654332221           1256678988888875     4889999999985   44444432   


Q ss_pred             cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc--cCCcceeEEEeccCCCEEEEEeC-------C
Q 009203          325 VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN--LHSSAVMGVAGMQQKQIVLSAGA-------D  395 (540)
Q Consensus       325 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~-------d  395 (540)
                       ...|.-=.|-  +.+.|+..+ +..|+-|++.+...  ..+.+.+.  -....|.....+++.++++..+-       .
T Consensus       105 -~e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~  178 (494)
T 1bpo_A          105 -TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV  178 (494)
T ss_dssp             -SSCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEE
T ss_pred             -CCCceEEEec--CCCeEEEEc-CCeeEEecccCCCC--chhheecchhcccceEEEEEECCCCCeEEEEeecccCCccc
Confidence             2346666776  345555554 46799999976332  12233321  12456777788899998876543       4


Q ss_pred             CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcC---CCeEEEEECCCC---ccee--eeeccccccCccc
Q 009203          396 KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTP---GRQLRLYDIRLR---QTEI--HAFGWKQESSESQ  467 (540)
Q Consensus       396 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~---~~~~--~~~~~~~~~~~~~  467 (540)
                      |.+.+|..+.+..-....+......+..........+++.+..   .+.++|.++...   ....  ...........-.
T Consensus       179 G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~  258 (494)
T 1bpo_A          179 GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN  258 (494)
T ss_dssp             EEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTT
T ss_pred             ceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccccc
Confidence            6789999886554222111111112222211111123333333   378999998643   1111  1111111112234


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203          468 SALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG  536 (540)
Q Consensus       468 ~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~  536 (540)
                      .-..++..|+....+..-+.-|.|++||+.+  +.++..-+-...+|..-+-+....-++.....|.|.
T Consensus       259 DFPvamqvs~kygviyviTK~G~i~lyDleT--gt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl  325 (494)
T 1bpo_A          259 DFPVAMQISEKHDVVFLITKYGYIHLYDLET--GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  325 (494)
T ss_dssp             CCEEEEEEETTTTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred             CceeEEEecccCCEEEEEecCceEEEEeccc--ceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence            4577889999988999999999999999998  676665555555666555555444455555666553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=0.00071  Score=66.45  Aligned_cols=257  Identities=11%  Similarity=0.065  Sum_probs=146.2

Q ss_pred             CceEEEEEec-CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEE-------ecCCCeEEEEeec
Q 009203          224 RKLRSLSLNP-VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAW-------HPQGNSLFSAHTA  295 (540)
Q Consensus       224 ~~V~~l~~sp-d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-------~~~~~~l~s~~~~  295 (540)
                      .....|+|+| +.++++++....+.|++.|...+... ++....    .+.......++|       +++|+.|+++.  
T Consensus       139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~~~----~~~~~~p~~ia~~~~~~~~d~~G~~lyvad--  211 (496)
T 3kya_A          139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLNIN----TIPTNRIRSIAFNKKIEGYADEAEYMIVAI--  211 (496)
T ss_dssp             CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEECCT----TSSCSBEEEEEECCCBTTTBCTTCEEEEEE--
T ss_pred             CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEccC----ccccCCCcEEEEeecccccCCCCCEEEEEe--
Confidence            3578999998 34566666555567888888765432 222110    112345788999       99999666651  


Q ss_pred             CCCC------CeEEEEecCC-CCCc-----eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecC------
Q 009203          296 DSGD------SQISVLNLNK-TKGR-----ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSER------  357 (540)
Q Consensus       296 ~~~d------~~i~vwd~~~-~~~~-----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~------  357 (540)
                       ..+      ..|.+++... +...     ..+..+       .....++++|.++.++++-..++.|..+|+.      
T Consensus       212 -~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~  283 (496)
T 3kya_A          212 -DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI  283 (496)
T ss_dssp             -CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred             -CCCCCcccCceEEEEecCCCCceeecccceeeccC-------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence             222      2366666443 1111     122211       2356789999666667777788889999997      


Q ss_pred             -CCCCccc---------cceeecccCCcceeEEEeccCCCEE-EEEeCCCeEEEEECC--CCCe----ee-ee-ccC---
Q 009203          358 -DAEDSWK---------PKALHRNLHSSAVMGVAGMQQKQIV-LSAGADKRIIGFDAG--VGRA----DF-KH-QIE---  415 (540)
Q Consensus       358 -~~~~~~~---------~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~dg~i~iwd~~--~~~~----~~-~~-~~~---  415 (540)
                       ++.. |.         ...+...........|+|+|+|+.| ++-+....|+.+|..  .+..    .. .. ...   
T Consensus       284 ~tg~~-~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~  362 (496)
T 3kya_A          284 KNGGS-WDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYR  362 (496)
T ss_dssp             HTTCC-CCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCB
T ss_pred             cCcee-ecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCccc
Confidence             5542 10         0111112233456899999999954 444567789986653  3321    11 11 000   


Q ss_pred             ---------ccEE-EEeec-CC---CCCceEEEEEcCCCeEEEEECCCCcceeeeecccc-----------------ccC
Q 009203          416 ---------SKCM-SVLPN-PC---DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ-----------------ESS  464 (540)
Q Consensus       416 ---------~~~~-~~~~~-~~---~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~-----------------~~~  464 (540)
                               .... .++.. +.   ...+.++++-..++.|+.++. ++. .....+...                 ...
T Consensus       363 DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~  440 (496)
T 3kya_A          363 DDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREV  440 (496)
T ss_dssp             CCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTT
T ss_pred             CCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhh
Confidence                     1122 23332 10   012256677777889999984 332 222222100                 000


Q ss_pred             ccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeccC
Q 009203          465 ESQSALINQSWSPD-GLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       465 ~~~~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ..-.....|+++++ |.++++=..++.|+.+++..
T Consensus       441 a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          441 ARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             CCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             hhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence            12245789999997 77777777788999999885

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.33  E-value=0.002  Score=60.02  Aligned_cols=224  Identities=7%  Similarity=-0.083  Sum_probs=136.9

Q ss_pred             CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC
Q 009203          245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH  324 (540)
Q Consensus       245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  324 (540)
                      ...|+..++........+...       ....+.+++|.+.+..|+.+   +...+.|..+++........+.. ..   
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-------~~~~~~~ld~d~~~~~lyw~---D~~~~~I~r~~~~g~~~~~~~~~-~~---   77 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-------GLEDAAAVDFVFSHGLIYWS---DVSEEAIKRTEFNKTESVQNVVV-SG---   77 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-------EEEEEEEEEEEGGGTEEEEE---ETTTTEEEEEETTSSSCCCEEEE-EC---
T ss_pred             cCeEEEEECCCCceEEEEEec-------CCCccEEEEEEeCCCEEEEE---ECCCCcEEEEEccCCCceEEEEc-CC---
Confidence            467899998765422222211       01225689999865555444   16788999999886522111111 11   


Q ss_pred             cccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC--CCeEEEEE
Q 009203          325 VKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA--DKRIIGFD  402 (540)
Q Consensus       325 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~--dg~i~iwd  402 (540)
                       -....++++.+.++.++++-...+.|.++++.....    ..+. .........+++.|.+..|+.+..  .+.|..++
T Consensus        78 -l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~----~~l~-~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~  151 (318)
T 3sov_A           78 -LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR----KVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  151 (318)
T ss_dssp             -CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEE-CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred             -CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE----EEEE-eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence             134678999874566666666778999999876542    2222 123456789999987666665552  57899999


Q ss_pred             CCCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE
Q 009203          403 AGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY  481 (540)
Q Consensus       403 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  481 (540)
                      +......... ..-.....+++++++.  .+.++-+..+.|..+|+.........       .+......++++. .+.+
T Consensus       152 ~dG~~~~~~~~~~l~~Pnglavd~~~~--~lY~aD~~~~~I~~~d~dG~~~~~~~-------~~~~~~P~glav~-~~~l  221 (318)
T 3sov_A          152 MDGSSRFIIINSEIYWPNGLTLDYEEQ--KLYWADAKLNFIHKSNLDGTNRQAVV-------KGSLPHPFALTLF-EDIL  221 (318)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEE-------CSCCSCEEEEEEE-TTEE
T ss_pred             cCCCCeEEEEECCCCCccEEEEeccCC--EEEEEECCCCEEEEEcCCCCceEEEe-------cCCCCCceEEEEe-CCEE
Confidence            8743322221 2234567889988553  45666677889999999754322211       1123456777775 3445


Q ss_pred             EEEEeCCCcEEEEeccC
Q 009203          482 ITSGSADPVIHLFDIRY  498 (540)
Q Consensus       482 l~sg~~dg~i~iwd~~~  498 (540)
                      +.+-...+.|..++..+
T Consensus       222 ywtd~~~~~V~~~~~~~  238 (318)
T 3sov_A          222 YWTDWSTHSILACNKYT  238 (318)
T ss_dssp             EEEETTTTEEEEEETTT
T ss_pred             EEEecCCCeEEEEECCC
Confidence            55655678888888865

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.26  E-value=0.0031  Score=59.18  Aligned_cols=279  Identities=7%  Similarity=0.030  Sum_probs=143.2

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ...+.+|.|.++ +..+++ +.+|.| ++..+.++. .+......   ......+.++.|.+ +..+++     +..+.|
T Consensus        35 ~~~~~~v~~~~~-~~~~~~-G~~g~i-~~s~DgG~t-W~~~~~~~---~~~~~~~~~i~~~~-~~~~~~-----g~~g~i  101 (327)
T 2xbg_A           35 TATILDMSFIDR-HHGWLV-GVNATL-METRDGGQT-WEPRTLVL---DHSDYRFNSVSFQG-NEGWIV-----GEPPIM  101 (327)
T ss_dssp             SSCEEEEEESSS-SCEEEE-ETTTEE-EEESSTTSS-CEECCCCC---SCCCCEEEEEEEET-TEEEEE-----EETTEE
T ss_pred             CCcEEEEEECCC-CcEEEE-cCCCeE-EEeCCCCCC-CeECCCCC---CCCCccEEEEEecC-CeEEEE-----ECCCeE
Confidence            357999999863 666774 456654 333333332 22211100   11234578899986 444444     455644


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      .. ..+.++.   -..........+.+..+.+.+ ++..++.+ .+|.|  |....+...|..  .. ......+..+++
T Consensus       102 ~~-S~DgG~t---W~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v--~~S~DgG~tW~~--~~-~~~~~~~~~~~~  170 (327)
T 2xbg_A          102 LH-TTDGGQS---WSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAI--YRTKDSGKNWQA--LV-QEAIGVMRNLNR  170 (327)
T ss_dssp             EE-ESSTTSS---CEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCE--EEESSTTSSEEE--EE-CSCCCCEEEEEE
T ss_pred             EE-ECCCCCC---ceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccE--EEEcCCCCCCEE--ee-cCCCcceEEEEE
Confidence            43 2332322   111111111223477888776 56555554 45644  322222222222  21 234557889999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeee--eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADF--KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      .+++.+++++...+..+-+|-. +..-.  ..........+.+.+++   .++ ..+.+|.+++.+...+.. .....  
T Consensus       171 ~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g---~~~-~~~~~G~~~~s~~D~G~t-W~~~~--  242 (327)
T 2xbg_A          171 SPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDG---RLW-MIVNGGKIAFSDPDNSEN-WGELL--  242 (327)
T ss_dssp             CTTSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTS---CEE-EEETTTEEEEEETTEEEE-ECCCB--
T ss_pred             cCCCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCC---CEE-EEeCCceEEEecCCCCCe-eEecc--
Confidence            9988887766544444444421 22111  12234556777777765   344 444577777764221211 11100  


Q ss_pred             ccc-CccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---ccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203          461 QES-SESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AHQKRVFKAVWHYSHPLLISISSDLNIG  536 (540)
Q Consensus       461 ~~~-~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~i~~l~~s~~~~~l~s~~~dg~v~  536 (540)
                       .. ..+...+.++.+.+++.+++++. +|.| ++..+.  ++....+.   .....+.++.|.+++ .+++++.+|.|.
T Consensus       243 -~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~Dg--G~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~  316 (327)
T 2xbg_A          243 -SPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDG--GQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILL  316 (327)
T ss_dssp             -CTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESST--TSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEE
T ss_pred             -CCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCC--CcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEE
Confidence             00 01223588999998888777664 6766 344443  33333332   223467889897554 466777889877


Q ss_pred             EEe
Q 009203          537 LHK  539 (540)
Q Consensus       537 iw~  539 (540)
                      -++
T Consensus       317 ~~~  319 (327)
T 2xbg_A          317 RYV  319 (327)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.25  E-value=0.00034  Score=73.97  Aligned_cols=192  Identities=7%  Similarity=-0.035  Sum_probs=110.7

Q ss_pred             ceeEEEEe-CCCCCEEEEEec-CC----cEEEEecCCC-CCccccceeecccCCcceeEEEeccCCCEEEEEeCC-----
Q 009203          328 IINSIIFL-PWENPCFATGGS-DH----AVVLWSERDA-EDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-----  395 (540)
Q Consensus       328 ~v~~~~~~-p~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-----  395 (540)
                      .+...+|+ | ||++|+.+.. +|    .|+++|+.++ +.+.  ..+     .....+++|+|||+.|+....+     
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~-----~~~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKV-----SGTNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCE-----EEECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccc-----cCceeeEEEecCCCEEEEEEECCCCCC
Confidence            47789999 9 9988876543 23    4999999998 5311  111     1124578999999888877665     


Q ss_pred             CeEEEEECCCCCe--eeee--ccCccEEEEeecCCCCCceEEEEEc---CCCeEEEEECCCCccee--eeeccccccCcc
Q 009203          396 KRIIGFDAGVGRA--DFKH--QIESKCMSVLPNPCDFNLFMVQTGT---PGRQLRLYDIRLRQTEI--HAFGWKQESSES  466 (540)
Q Consensus       396 g~i~iwd~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~~~~~--~~~~~~~~~~~~  466 (540)
                      ..|+++++.++..  ...+  ........+.++|++   .+|+..+   ....|.++|+.++....  ..     .....
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg---~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----l~~~~  318 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT---NTLCIGSQSPETAEVHLLDLRKGNAHNTLEI-----VRPRE  318 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS---SEEEEEEECSSCEEEEEEESSSCTTCCCEEE-----SSCCC
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC---CEEEEEecCCCCceEEEEECCCCCCCceeEE-----eecCC
Confidence            2688889887642  1222  223445678899988   4444433   34568889998753111  11     11223


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCC--C--cEEEEeccCCCCccccc-cccccc--ceeEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          467 QSALINQSWSPDGLYITSGSAD--P--VIHLFDIRYSANKPSQS-IRAHQK--RVFKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       467 ~~~v~~~~~sp~g~~l~sg~~d--g--~i~iwd~~~~~~~~~~~-~~~h~~--~i~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      .....++.|+..+.+++....+  +  .|..+++.++  ..... +..|..  .+..+.+. .+.++++...||..+||
T Consensus       319 ~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~--~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          319 KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP--SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST--TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc--ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            3445556655444444444443  3  5666666531  12222 222322  45566665 33456677778876655

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=0.00092  Score=65.67  Aligned_cols=249  Identities=10%  Similarity=0.040  Sum_probs=142.6

Q ss_pred             CceeEEEec-CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE-------eCCCCCEEEEEec
Q 009203          276 WPEDIAWHP-QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF-------LPWENPCFATGGS  347 (540)
Q Consensus       276 ~V~~~~~~~-~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~p~~~~~l~s~~~  347 (540)
                      ....|+|.| ++..|+.+.   ...+.|++.|+..+   ..................|+|       ++ ++..|+.+..
T Consensus       140 ~p~~la~dp~~~~~Lyv~~---~~~~~i~~ID~~~~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~  212 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICY---DGHKAIQLIDLKNR---MLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAID  212 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEE---ETEEEEEEEETTTT---EEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEEC
T ss_pred             CCCEEEEccCCCCEEEEEE---CCCCeEEEEECCCC---EEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeC
Confidence            356899998 355555551   33467888998864   223333221111235889999       99 8885655554


Q ss_pred             CC-------cEEEEecCC-CCCcccc--ceeecccCCcceeEEEeccC-CCEEEEEeCCCeEEEEECC-------CCCe-
Q 009203          348 DH-------AVVLWSERD-AEDSWKP--KALHRNLHSSAVMGVAGMQQ-KQIVLSAGADKRIIGFDAG-------VGRA-  408 (540)
Q Consensus       348 dg-------~i~iwd~~~-~~~~~~~--~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~iwd~~-------~~~~-  408 (540)
                      .+       .|.+++... +......  ..+..   ......++++|+ +.++++-..++.|..+|+.       ++.. 
T Consensus       213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~---~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~  289 (496)
T 3kya_A          213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA---YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW  289 (496)
T ss_dssp             CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE---ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC
T ss_pred             CCCCcccCceEEEEecCCCCceeecccceeecc---CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee
Confidence            43       266666433 2221000  12211   134567888994 5556666678889999987       5543 


Q ss_pred             -------------eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce----eeeecc---cccc-----
Q 009203          409 -------------DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE----IHAFGW---KQES-----  463 (540)
Q Consensus       409 -------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~----~~~~~~---~~~~-----  463 (540)
                                   +...........++++|++.  .++++-+..+.|+.++.......    ....+.   ....     
T Consensus       290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~--~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~  367 (496)
T 3kya_A          290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGK--YAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGT  367 (496)
T ss_dssp             CCBGGGCTTTEEEEEECSSSSCCEEEEECTTSS--EEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGG
T ss_pred             cccccccccccceeEecCCCCCceEEEEcCCCC--EEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccc
Confidence                         11222234567899999872  24566677789999765432211    111110   0000     


Q ss_pred             CccccCeE-EEEEc-------CCCCEEEEEeCCCcEEEEeccCCCCccccccccc------------------------c
Q 009203          464 SESQSALI-NQSWS-------PDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH------------------------Q  511 (540)
Q Consensus       464 ~~~~~~v~-~~~~s-------p~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h------------------------~  511 (540)
                      ...-.... .++..       ++|.++++-..++.|+.++..   +. +.++.+.                        -
T Consensus       368 ~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~---G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f  443 (496)
T 3kya_A          368 EARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE---GI-VSTYAGRGASTSLADGNQWGTDDGDLREVARF  443 (496)
T ss_dssp             GCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT---CB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCC
T ss_pred             ccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC---CC-EEEEecccccccccCccccccCCCCchhhhhc
Confidence            01112345 55554       567777777778899999843   32 2222211                        1


Q ss_pred             cceeEEEEcCC-CCEEEEEEcCCcEEEEeC
Q 009203          512 KRVFKAVWHYS-HPLLISISSDLNIGLHKI  540 (540)
Q Consensus       512 ~~i~~l~~s~~-~~~l~s~~~dg~v~iw~l  540 (540)
                      .....|+++++ |.++++-..+..|+.+++
T Consensus       444 ~~P~gIavd~~~g~lyVaD~~N~rIrki~~  473 (496)
T 3kya_A          444 RDVSGLVYDDVKEMFYVHDQVGHTIRTISM  473 (496)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence            24678999997 777777777888888763

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.16  E-value=0.002  Score=62.35  Aligned_cols=224  Identities=10%  Similarity=-0.053  Sum_probs=129.6

Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      ....|+..++.....   ......    ...+..|+|++.++.++++-...+.|+.+++...........+. .......
T Consensus        90 ~~~~I~~i~l~~~~~---~~~~~~----~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p  161 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEY---TSLIPN----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAP  161 (400)
T ss_dssp             ETTEEEEECTTSCSC---EEEECS----CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE-CSSCSCE
T ss_pred             ccceeEEEccCCcce---eEeccc----cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE-eCCCCCc
Confidence            457899999886532   222322    34588999998455556666667889999987632100012221 1133457


Q ss_pred             eEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEc-CCCeEEEEECCCCccee
Q 009203          378 MGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGT-PGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       378 ~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~  454 (540)
                      ..+++.+ .++++++-...+.|.+.++.......... .......++.+|.+.  .++++-. ..+.|...++.......
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g--~ly~td~~~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTT--EEEEEECSSSCCEEEEETTSCSCEE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccC--eEEEEeCCCCCEEEEEeCCCCccEE
Confidence            7889987 45555566667899999998654433322 334567888888542  3444432 24789999887544322


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      ..       ...-.....|++++++..|+.+ ...+.|..+|++......+...........+|++. .+.++++....+
T Consensus       240 ~~-------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          240 LV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             EE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             EE-------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            11       1122467899999877766655 45678999998742222222111122334566663 334555555556


Q ss_pred             cEEEEe
Q 009203          534 NIGLHK  539 (540)
Q Consensus       534 ~v~iw~  539 (540)
                      .|..++
T Consensus       312 ~V~~~~  317 (400)
T 3p5b_L          312 AIFSAN  317 (400)
T ss_dssp             SEEEEE
T ss_pred             eEEEEE
Confidence            666554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.13  E-value=0.0018  Score=60.33  Aligned_cols=221  Identities=10%  Similarity=-0.025  Sum_probs=128.4

Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      ....|+.+++..... .....+..    ...+.+++|++.++.++++-...+.|..+++.++..   ...+.. ......
T Consensus        11 ~~~~I~~i~l~~~~~-~~~~~~~~----~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~---~~~~~~-~~l~~p   81 (318)
T 3sov_A           11 NRRDLRLVDATNGKE-NATIVVGG----LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES---VQNVVV-SGLLSP   81 (318)
T ss_dssp             CEEEEEEEETTCTTS-CCEEEEEE----EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC---CCEEEE-ECCSCC
T ss_pred             ccCeEEEEECCCCce-EEEEEecC----CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc---eEEEEc-CCCCCc
Confidence            467899999986521 11111211    134778999984566666766778899999887632   111111 122456


Q ss_pred             eEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeee-ccCccEEEEeecCCCCCceEEEEE-cCCCeEEEEECCCCccee
Q 009203          378 MGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       378 ~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~  454 (540)
                      ..+++.+. +.++++-...+.|.++++......... ........++.+|.+.  .++++- +..+.|..+++.......
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g--~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG--FMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGT--EEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCC--EEEEEecCCCCEEEEEEcCCCCeEE
Confidence            78888864 455555566789999998754332222 3334567888887542  344443 235789988887543221


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      . .      ...-.....++|+|++..|+.+ +..+.|..+|++....+.+  +.+......++++.. +.++++-...+
T Consensus       160 ~-~------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~--~~~~~~~P~glav~~-~~lywtd~~~~  229 (318)
T 3sov_A          160 I-I------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV--VKGSLPHPFALTLFE-DILYWTDWSTH  229 (318)
T ss_dssp             E-E------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSCCSCEEEEEEET-TEEEEEETTTT
T ss_pred             E-E------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE--ecCCCCCceEEEEeC-CEEEEEecCCC
Confidence            1 0      1112457899999976665554 4568899999874212222  122233456677643 34444544556


Q ss_pred             cEEEEe
Q 009203          534 NIGLHK  539 (540)
Q Consensus       534 ~v~iw~  539 (540)
                      .|..++
T Consensus       230 ~V~~~~  235 (318)
T 3sov_A          230 SILACN  235 (318)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            666554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.10  E-value=0.0011  Score=60.95  Aligned_cols=162  Identities=6%  Similarity=0.076  Sum_probs=106.7

Q ss_pred             ceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc------CCcceeEEEe---ccCCCEEEEEe-----
Q 009203          328 IINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL------HSSAVMGVAG---MQQKQIVLSAG-----  393 (540)
Q Consensus       328 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~v~~l~~---s~~~~~l~~~~-----  393 (540)
                      ...+++|++.++.++++.-..++|..||...+..    ..+...+      ....+..|.|   .|++.++++..     
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~----~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH----FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE----EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE----EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            4568899984444444444789999999976542    1111111      1124689999   68877777544     


Q ss_pred             --------CCCeEEEEECC---CCCeeeeecc--------------CccEEEEeecCCCCCceEEEEEcCC-CeEEEEEC
Q 009203          394 --------ADKRIIGFDAG---VGRADFKHQI--------------ESKCMSVLPNPCDFNLFMVQTGTPG-RQLRLYDI  447 (540)
Q Consensus       394 --------~dg~i~iwd~~---~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~d-g~v~i~d~  447 (540)
                              .+..|..||+.   +++.+.....              ...+..++.++++   ...++++.. +.|..++.
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G---naYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG---NSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS---CEEEEEEESSCEEEEECT
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC---CEEEeCCCCCCeEEEEeC
Confidence                    26789999999   7777554332              1247788899887   567777777 77777777


Q ss_pred             CCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          448 RLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      ......  .+.............+.|+++|+|+.|++....|.|..+|+..
T Consensus       167 dG~~~~--~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          167 DGKTVS--TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TSCCEE--EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCCEEe--eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            644222  1111111122234578999999999988887799999999885

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.06  E-value=0.0095  Score=62.62  Aligned_cols=226  Identities=8%  Similarity=-0.074  Sum_probs=131.8

Q ss_pred             CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC-ceeEEeecCCC
Q 009203          245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG-RACVTFLDDKP  323 (540)
Q Consensus       245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~  323 (540)
                      ...|+..++........+         .....+.+++|.+.+..|+.+   +...+.|+.+++..... ......+..  
T Consensus       403 ~~~Ir~i~l~~~~~~~l~---------~~~~~~~gl~~d~~~~~lY~s---D~~~~~I~~~~l~g~~~~~~~~~vi~~--  468 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHGVSSYDTVISR--  468 (791)
T ss_dssp             BSSEEEECTTSCCCEEEE---------CSCSSEEEEEEETTTTEEEEE---ETTTTEEEEEEC--------CEEEECS--
T ss_pred             ccceeEeeccCCcceeee---------cCCCceEEEeecccCCeeEEe---eccceeEEEEeccCCCCCcceeEEEec--
Confidence            356777777655432211         123456789999865555544   16678899999874211 011222221  


Q ss_pred             CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-C-CeEEEE
Q 009203          324 HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-D-KRIIGF  401 (540)
Q Consensus       324 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d-g~i~iw  401 (540)
                       .......|++.+..++++++-...+.|.+.++.....    ..+. .........|++.|.+..|+.... . +.|.+.
T Consensus       469 -~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~----~~l~-~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          469 -DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             -SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             -CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE----EEEE-eCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence             1234778999884456666767788999999986542    2222 123345889999997666665543 3 689999


Q ss_pred             ECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC
Q 009203          402 DAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL  480 (540)
Q Consensus       402 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~  480 (540)
                      ++.......... .-.....+++++.+.  .++++-...+.|..+++..........     ....-....+|++.. +.
T Consensus       543 ~~dG~~~~~lv~~~l~~P~GLavD~~~~--~LYwaD~~~~~I~~~d~dG~~~~~v~~-----~~~~l~~P~glav~~-~~  614 (791)
T 3m0c_C          543 GLNGVDIYSLVTENIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNGGNRKTILE-----DEKRLAHPFSLAVFE-DK  614 (791)
T ss_dssp             ETTSCCEEEEECSSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEEE-----CTTTTSSEEEEEEET-TE
T ss_pred             ecCCCceEEEEeCCCCCceEEEEecCCC--eEEEEeCCCCcEEEEecCCCceEEEec-----CCCccCCCCEEEEeC-CE
Confidence            987544433322 225677888886553  455555667889999997654322211     011122345666642 34


Q ss_pred             EEEEEeCCCcEEEEeccC
Q 009203          481 YITSGSADPVIHLFDIRY  498 (540)
Q Consensus       481 ~l~sg~~dg~i~iwd~~~  498 (540)
                      ++++-...+.|...|..+
T Consensus       615 lYwtD~~~~~I~~~dk~t  632 (791)
T 3m0c_C          615 VFWTDIINEAIFSANRLT  632 (791)
T ss_dssp             EEEEETTTTEEEEEETTT
T ss_pred             EEEEECCCCEEEEEeCCC
Confidence            444555667788777655

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.02  E-value=0.00046  Score=63.41  Aligned_cols=161  Identities=7%  Similarity=0.047  Sum_probs=104.8

Q ss_pred             CCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeee-ecc-------CccEEEEee---cCCCCCceEEEEEc---
Q 009203          373 HSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFK-HQI-------ESKCMSVLP---NPCDFNLFMVQTGT---  437 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~-------~~~~~~~~~---~~~~~~~~~l~~~~---  437 (540)
                      ......++.|.+....++.++ ..+.|..||...+..... ...       ......+.+   +|.+   +++++..   
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g---rL~vv~~~~~   87 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK---RLFAVMKNAK   87 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC---EEEEEEEETT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC---cEEEEEcccc
Confidence            445567899988666666666 689999999986544322 111       124578888   5764   5666433   


Q ss_pred             ----------CCCeEEEEECC---CCcceeeeeccccccCc-------cccCeEEEEEcCCCCEEEEEeCC-CcEEEEec
Q 009203          438 ----------PGRQLRLYDIR---LRQTEIHAFGWKQESSE-------SQSALINQSWSPDGLYITSGSAD-PVIHLFDI  496 (540)
Q Consensus       438 ----------~dg~v~i~d~~---~~~~~~~~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~sg~~d-g~i~iwd~  496 (540)
                                .+..|..||+.   +++..... .......+       -......++..++|+..++++.. +.|..++.
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                      26789999999   66543322 11100001       11347899999999999998887 87777666


Q ss_pred             cCCCCccccccc------ccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          497 RYSANKPSQSIR------AHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       497 ~~~~~~~~~~~~------~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +   ++.+..+.      ......+.|+++|+|..|+....+|.+..+|+
T Consensus       167 d---G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          167 D---GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             T---SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred             C---CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence            6   33232221      11224679999999998888877999988874

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.00  E-value=0.0052  Score=58.22  Aligned_cols=243  Identities=14%  Similarity=0.109  Sum_probs=122.0

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEEEeecCCCC-
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFSAHTADSGD-  299 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~~~~~d-  299 (540)
                      ..-+.|+|.|| |+++++ ..+|.|.+++  .+.. ..+. ... ...........++|+|+   +..|+++... ..+ 
T Consensus        31 ~~P~~ia~~pd-G~l~V~-e~~g~I~~i~--~g~~-~~~~-~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~-~~~~  102 (352)
T 2ism_A           31 EVPWALAFLPD-GGMLIA-ERPGRIRLFR--EGRL-STYA-ELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTV-AEGG  102 (352)
T ss_dssp             SCEEEEEECTT-SCEEEE-ETTTEEEEEE--TTEE-EEEE-ECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEE-CTTS
T ss_pred             CCceEEEEcCC-CeEEEE-eCCCeEEEEE--CCCc-cEee-cce-EeecCCCCceeEEECCCCCCCCEEEEEEec-CCCC
Confidence            35689999996 775555 5669999998  3321 1111 111 11122355789999998   5666655211 111 


Q ss_pred             --CeEEEEecCCCCC---ceeEEeec--CCCCcccceeEEEEeCCCCCEEEEEec-------------CCcEEEEecCCC
Q 009203          300 --SQISVLNLNKTKG---RACVTFLD--DKPHVKGIINSIIFLPWENPCFATGGS-------------DHAVVLWSERDA  359 (540)
Q Consensus       300 --~~i~vwd~~~~~~---~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~-------------dg~i~iwd~~~~  359 (540)
                        +.|..|+...+..   ...+..+.  ....|  ....++|.| ++.++++.+.             .|.|.-++....
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~  179 (352)
T 2ism_A          103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE  179 (352)
T ss_dssp             SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred             CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence              6788888764311   11122232  11122  246899999 8877766432             145666665431


Q ss_pred             CCc---------cccceeecccCCcceeEEEecc-CCCEEEEEeCCCe--------EEEEECCCCC--------------
Q 009203          360 EDS---------WKPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADKR--------IIGFDAGVGR--------------  407 (540)
Q Consensus       360 ~~~---------~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~--------i~iwd~~~~~--------------  407 (540)
                      -..         .....+. .++ .....++|+| +|.++++-.....        |.+..  .+.              
T Consensus       180 ~p~~npf~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~  255 (352)
T 2ism_A          180 PAPGNPFLGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDP  255 (352)
T ss_dssp             BCTTCTTTTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCT
T ss_pred             CCCCCcccCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCC
Confidence            000         0011111 122 3367899999 6666555443333        33332  222              


Q ss_pred             ----eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEE
Q 009203          408 ----ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT  483 (540)
Q Consensus       408 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  483 (540)
                          ++...........+++. .+   .++++....+.|...++............. .+-.....+..+++.|||.+++
T Consensus       256 ~~~~p~~~~~~~~ap~G~~~~-~G---~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~-~~~~~~~rp~~v~~~pdG~lyv  330 (352)
T 2ism_A          256 RYRDPLYFWPQGFPPGNLAFF-RG---DLYVAGLRGQALLRLVLEGERGRWRVLRVE-TALSGFGRLREVQVGPDGALYV  330 (352)
T ss_dssp             TSCCCSEECTTCCCEEEEEEE-TT---EEEEEETTTTEEEEEEEEEETTEEEEEEEE-EEEESSCCEEEEEECTTSCEEE
T ss_pred             CCcCCeEecCCCCCCcceEEE-CC---EEEEEECCCCEEEEEEECCCCcceeecchh-eecccCCCeeEEEECCCCcEEE
Confidence                11111112233445552 22   456666666778777776433210000000 0001124688999999998766


Q ss_pred             EEe
Q 009203          484 SGS  486 (540)
Q Consensus       484 sg~  486 (540)
                      +..
T Consensus       331 ~~~  333 (352)
T 2ism_A          331 TTS  333 (352)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.98  E-value=0.0035  Score=59.41  Aligned_cols=237  Identities=9%  Similarity=-0.009  Sum_probs=121.9

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCC----CCEEEEEecC----
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWE----NPCFATGGSD----  348 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~~l~s~~~d----  348 (540)
                      ...++|.|+|+++++     ..++.|.+++  .+. ...+..+............|+|+| +    +.++++-...    
T Consensus        33 P~~ia~~pdG~l~V~-----e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           33 PWALAFLPDGGMLIA-----ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             EEEEEECTTSCEEEE-----ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSS
T ss_pred             ceEEEEcCCCeEEEE-----eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCC
Confidence            578999999986666     4569999998  332 122222211111134588999999 6    4444444432    


Q ss_pred             -CcEEEEecCCCCCcccccee-e-cc---cCCcceeEEEeccCCCEEEEEeC-------------CCeEEEEECCCC---
Q 009203          349 -HAVVLWSERDAEDSWKPKAL-H-RN---LHSSAVMGVAGMQQKQIVLSAGA-------------DKRIIGFDAGVG---  406 (540)
Q Consensus       349 -g~i~iwd~~~~~~~~~~~~~-~-~~---~~~~~v~~l~~s~~~~~l~~~~~-------------dg~i~iwd~~~~---  406 (540)
                       +.|..|+...+.. .....+ . ..   ........++|.|+|.++++.+.             .|.|..+|....   
T Consensus       104 ~~~v~r~~~~~~~~-~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~  182 (352)
T 2ism_A          104 RNQVVRLRHLGERG-VLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP  182 (352)
T ss_dssp             EEEEEEEEECSSCE-EEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred             ccEEEEEEeCCCCc-CceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence             5688888775421 111111 1 11   11123468999999976666432             256777776531   


Q ss_pred             -----------CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCe--------EEEEECCCCcceee-----------e
Q 009203          407 -----------RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ--------LRLYDIRLRQTEIH-----------A  456 (540)
Q Consensus       407 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--------v~i~d~~~~~~~~~-----------~  456 (540)
                                 ..+.... ......++++|...  .++++-.....        |.+.  ..+.....           .
T Consensus       183 ~npf~~~~~~~~~i~a~G-~rnp~g~a~d~~~g--~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~  257 (352)
T 2ism_A          183 GNPFLGRRGARPEVYSLG-HRNPQGLAWHPKTG--ELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRY  257 (352)
T ss_dssp             TCTTTTCTTSCTTEEEEC-CSEECCCEECTTTC--CEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTS
T ss_pred             CCcccCCCCCCccEEEEc-CCCcccEEEECCCC--CEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCC
Confidence                       0111111 12345677787332  23333322222        3332  22110000           0


Q ss_pred             eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCc--c--cccccccccceeEEEEcCCCCEEEEEE
Q 009203          457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK--P--SQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~--~--~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ....... .+......++| .+|.++++.-..+.|...++......  .  ...+-.-...+..+++.|||.++++..
T Consensus       258 ~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          258 RDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             cCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            0000011 12235677888 46777776666778888887742110  0  112212235789999999998777654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.98  E-value=0.022  Score=58.33  Aligned_cols=204  Identities=10%  Similarity=-0.024  Sum_probs=119.4

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      -+...+|+|++.++.++++-...+.|..+++........+..       ........+++.+.+..|+.+   +...+.|
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~-------~~~~~P~GlAvD~~~~~ly~~---d~~~~~I  108 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-------SGLLSPDGLACDWLGEKLYWT---DSETNRI  108 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC-------SSCSCEEEEEEETTTTEEEEE---ETTTTEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe-------CCCCCcCeEEEEecCCEEEEE---eCCCCEE
Confidence            356889999996566666666678898888875432122211       112347789999976655554   2678999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      .+.+++...   .......   .-.....|++.|..+.++++-. ..+.|...++.....    ..+. .......+.|+
T Consensus       109 ~v~~~dG~~---~~~l~~~---~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~----~~l~-~~~~~~P~Gla  177 (619)
T 3s94_A          109 EVSNLDGSL---RKVLFWQ---ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----FIII-NSEIYWPNGLT  177 (619)
T ss_dssp             EEEETTSCS---CEEEECS---SCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEE-CSSCSSEEEEE
T ss_pred             EEEECCCCC---EEEEEeC---CCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce----EEEE-eCCCCCCcEEE
Confidence            999998531   1222211   1234779999994455555542 246777777765432    2222 12345678999


Q ss_pred             eccCCCEEEEE-eCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          382 GMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       382 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      +++++..|+.+ ...+.|..+|+.......... .......+++..+    .++++-...+.|...|..+++
T Consensus       178 ld~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~----~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          178 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED----ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS----EEEEECTTTCSEEEEESSSCC
T ss_pred             EEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC----EEEEecCCCCEEEEEECCCCc
Confidence            99876655555 456789999987533322111 1122234444433    366666677889998887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.95  E-value=0.013  Score=55.51  Aligned_cols=248  Identities=12%  Similarity=-0.001  Sum_probs=126.9

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEEEeecCCCC-
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFSAHTADSGD-  299 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~~~~~d-  299 (540)
                      ..-+.|+|.|| |+++++ ..+|.|++++. ++.  ..+. ... ...........|+|+|+   +..|++++.....+ 
T Consensus        29 ~~P~~ia~~pd-G~l~V~-e~~g~I~~~d~-~G~--~~~~-~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~  101 (354)
T 3a9g_A           29 EVPWSIAPLGG-GRYLVT-ERPGRLVLISP-SGK--KLVA-SFD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG  101 (354)
T ss_dssp             SCEEEEEEEET-TEEEEE-ETTTEEEEECS-SCE--EEEE-ECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred             CCCeEEEEcCC-CeEEEE-eCCCEEEEEeC-CCc--eEee-ccc-eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence            45789999996 775555 56699998873 333  2221 111 11122345789999998   55665552100012 


Q ss_pred             ---CeEEEEecCCCCC-----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-------------CCcEEEEecCC
Q 009203          300 ---SQISVLNLNKTKG-----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-------------DHAVVLWSERD  358 (540)
Q Consensus       300 ---~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-------------dg~i~iwd~~~  358 (540)
                         ..|..|+......     ...+..+.....|  ....|+|.| ++.++++.+.             .|.|.-++...
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG  178 (354)
T 3a9g_A          102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG  178 (354)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred             CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence               5677787764310     1112222221222  246799999 8887776442             24555555543


Q ss_pred             CCCcc----ccceeecccCCcceeEEEecc-CCCEEEEEeCCC---eEEEEECCC--------C--------Ceeeee-c
Q 009203          359 AEDSW----KPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGADK---RIIGFDAGV--------G--------RADFKH-Q  413 (540)
Q Consensus       359 ~~~~~----~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg---~i~iwd~~~--------~--------~~~~~~-~  413 (540)
                      .-...    ..... ..++ .....++|+| +|.++++-....   .|.+...-.        +        .++... .
T Consensus       179 ~~p~~npf~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~  256 (354)
T 3a9g_A          179 RPPADNPFPNSPIW-SYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS  256 (354)
T ss_dssp             CCCTTSSSTTCCEE-EECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             CCCCCCCCCCCcEE-EEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence            20000    01111 1223 3356899999 666555533322   233332110        0        111122 2


Q ss_pred             cCccEEEEeecCCC----CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203          414 IESKCMSVLPNPCD----FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       414 ~~~~~~~~~~~~~~----~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                      .......+.+....    ..+.++++....+.|..+++...........   .+.+....+..+++.|||.++++..
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccCCCCCeeEEEECCCCcEEEEEe
Confidence            23345566663211    2336777777778898888875322211100   1122245789999999997766654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.92  E-value=0.0064  Score=57.60  Aligned_cols=240  Identities=11%  Similarity=-0.000  Sum_probs=123.8

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC---CCCEEEEEec---C--
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW---ENPCFATGGS---D--  348 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~s~~~---d--  348 (540)
                      ...++|.|+|+++++     ..++.|+++|. .+.  ..+..+............|+|+|+   ++.++++-+.   +  
T Consensus        31 P~~ia~~pdG~l~V~-----e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           31 PWSIAPLGGGRYLVT-----ERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             EEEEEEEETTEEEEE-----ETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CeEEEEcCCCeEEEE-----eCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            578999999986666     45699999973 342  222222110111245889999993   2444444332   3  


Q ss_pred             --CcEEEEecCCCCC-cccccee-e-c-ccCCcceeEEEeccCCCEEEEEeC-------------CCeEEEEECCCC---
Q 009203          349 --HAVVLWSERDAED-SWKPKAL-H-R-NLHSSAVMGVAGMQQKQIVLSAGA-------------DKRIIGFDAGVG---  406 (540)
Q Consensus       349 --g~i~iwd~~~~~~-~~~~~~~-~-~-~~~~~~v~~l~~s~~~~~l~~~~~-------------dg~i~iwd~~~~---  406 (540)
                        ..|..|+...... ......+ . . .........|+|.|||.++++.+.             .|.|..++....   
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~  182 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA  182 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence              5677777765410 0001111 1 0 111123467999999987776432             246666666532   


Q ss_pred             ------CeeeeeccCccEEEEeecCCCCCceEEEEEcCCC---eEEEEECCCCccee----------e-eeccccccCcc
Q 009203          407 ------RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR---QLRLYDIRLRQTEI----------H-AFGWKQESSES  466 (540)
Q Consensus       407 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~----------~-~~~~~~~~~~~  466 (540)
                            ..+.... ......++++|...  .++++-...+   .|.+..  .+....          . ...........
T Consensus       183 ~npf~~~~i~a~G-~rnp~Gla~d~~~g--~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~  257 (354)
T 3a9g_A          183 DNPFPNSPIWSYG-HRNPQGIDWHRASG--VMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE  257 (354)
T ss_dssp             TSSSTTCCEEEEC-CSCCCEEEECTTTC--CEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred             CCCCCCCcEEEEc-cCCcceEEEeCCCC--CEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence                  0111111 12345677787332  2333322211   233322  111000          0 00000011011


Q ss_pred             ccCeEEEEEc-------CCCCEEEEEeCCCcEEEEeccCCCCccc--ccc-cccccceeEEEEcCCCCEEEEEE
Q 009203          467 QSALINQSWS-------PDGLYITSGSADPVIHLFDIRYSANKPS--QSI-RAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       467 ~~~v~~~~~s-------p~g~~l~sg~~dg~i~iwd~~~~~~~~~--~~~-~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ...+..++|.       .+|.++++.-..+.|...++... +...  ..+ .+-...+..+++.|||.++++..
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN-MEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG-GCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC-CcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            2357888883       57777777777788888888742 2221  122 22245789999999998777664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.91  E-value=0.0014  Score=61.58  Aligned_cols=211  Identities=12%  Similarity=0.109  Sum_probs=115.0

Q ss_pred             ceeEEEecCCCeEEEEe--ecC------CCCCeEEEEecCCCCCc-eeEEeecC-CCCcccceeEEEEeCC-CCC--EEE
Q 009203          277 PEDIAWHPQGNSLFSAH--TAD------SGDSQISVLNLNKTKGR-ACVTFLDD-KPHVKGIINSIIFLPW-ENP--CFA  343 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~--~~~------~~d~~i~vwd~~~~~~~-~~~~~~~~-~~~~~~~v~~~~~~p~-~~~--~l~  343 (540)
                      .-+++..|+|..++++.  .++      ..+|.|.++|..+.... ..+..... ..........|.+.++ ++.  +++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            44677778775555530  000      16899999999843221 22222211 1112345777887652 232  444


Q ss_pred             EEec--CCcEEEEecCCCCCcccc-ceeecccCCcceeEEEeccCCCEEEEEe-----------------CCCeEEEEEC
Q 009203          344 TGGS--DHAVVLWSERDAEDSWKP-KALHRNLHSSAVMGVAGMQQKQIVLSAG-----------------ADKRIIGFDA  403 (540)
Q Consensus       344 s~~~--dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~-----------------~dg~i~iwd~  403 (540)
                      +-..  +.+|.+|++......... ..+. ...-...+++.+.++|.++++..                 ..|.|..+|.
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~-g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIR-HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEEC-CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccc-cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            4333  467888887654321111 1111 11234678999999998877654                 1245666665


Q ss_pred             CCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-CCCEE
Q 009203          404 GVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-DGLYI  482 (540)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l  482 (540)
                      .  +.......-.....++++|++.  .++++-+..+.|..|++.........    ..+ ...+..-.+++++ +|++.
T Consensus       211 ~--~~~~~~~~l~~pNGia~spDg~--~lYvadt~~~~I~~~~~~~~g~l~~~----~~~-~~~g~PDGi~vD~e~G~lw  281 (355)
T 3sre_A          211 N--DVRVVAEGFDFANGINISPDGK--YVYIAELLAHKIHVYEKHANWTLTPL----RVL-SFDTLVDNISVDPVTGDLW  281 (355)
T ss_dssp             T--CCEEEEEEESSEEEEEECTTSS--EEEEEEGGGTEEEEEEECTTSCEEEE----EEE-ECSSEEEEEEECTTTCCEE
T ss_pred             C--eEEEeecCCcccCcceECCCCC--EEEEEeCCCCeEEEEEECCCCcEecC----EEE-eCCCCCceEEEeCCCCcEE
Confidence            3  3322233335678899999873  34555667789999998743221111    011 1135678899999 59987


Q ss_pred             EEEeCC-CcEEEEecc
Q 009203          483 TSGSAD-PVIHLFDIR  497 (540)
Q Consensus       483 ~sg~~d-g~i~iwd~~  497 (540)
                      +++..+ +.|..|+..
T Consensus       282 va~~~~g~~v~~~~P~  297 (355)
T 3sre_A          282 VGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEESCHHHHHSCCTT
T ss_pred             EEecCCceEEEEECCC
Confidence            766544 334444433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.88  E-value=0.019  Score=54.40  Aligned_cols=254  Identities=11%  Similarity=0.088  Sum_probs=125.3

Q ss_pred             CceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEEEeecCCC-
Q 009203          224 RKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFSAHTADSG-  298 (540)
Q Consensus       224 ~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~~~~~-  298 (540)
                      ..-+.|+|.|| |+ ++++ ...|.|++++.. +.....+. ...............++|+|+   +..|+.++..... 
T Consensus        18 ~~P~~i~~~pd-G~~l~V~-e~~G~i~~~~~~-g~~~~~~~-~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           18 DHPWALAFLPD-NHGMLIT-LRGGELRHWQAG-KGLSAPLS-GVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             SSEEEEEECST-TCCEEEE-ETTTEEEEEETT-TEECCCCB-SCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             CCcEEEEEcCC-CCEEEEE-eCCceEEEEeCC-CceeeEec-CCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            45789999996 77 5554 567999998853 22111111 110011122345689999996   5555554221111 


Q ss_pred             ---CCeEEEEecCCCCCc--eeEEeecCCC-----CcccceeEEEEeCCCCCEEEEEecC-------------CcEEEEe
Q 009203          299 ---DSQISVLNLNKTKGR--ACVTFLDDKP-----HVKGIINSIIFLPWENPCFATGGSD-------------HAVVLWS  355 (540)
Q Consensus       299 ---d~~i~vwd~~~~~~~--~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd  355 (540)
                         ...|..|++......  .....+...+     .|.  ...|+|.| ++.++++.+..             |.|.-++
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~  170 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLT  170 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence               235666766533110  1111222211     222  35799999 88666665432             4566666


Q ss_pred             cCCCCCcc---------ccceeecccCCcceeEEEecc-CCCEEEEEeC-CCeEEEEECCCCCe----------------
Q 009203          356 ERDAEDSW---------KPKALHRNLHSSAVMGVAGMQ-QKQIVLSAGA-DKRIIGFDAGVGRA----------------  408 (540)
Q Consensus       356 ~~~~~~~~---------~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~-dg~i~iwd~~~~~~----------------  408 (540)
                      ....-...         ...... .++ .....++|+| +|.++++-.. ++.=.|.-+..+..                
T Consensus       171 ~dG~~p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~  248 (353)
T 2g8s_A          171 DQGEIPDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK  248 (353)
T ss_dssp             TTSCCCTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred             CCCCCCCCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence            65421000         011111 222 3467899999 5555444222 11112221211111                


Q ss_pred             ---------------eeeeccCccEEEEeecCCC----CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccC
Q 009203          409 ---------------DFKHQIESKCMSVLPNPCD----FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA  469 (540)
Q Consensus       409 ---------------~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  469 (540)
                                     +...........+.+...+    ..+.++++....+.|...++..... .....   .+......
T Consensus       249 ~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~---~~~~~~~r  324 (353)
T 2g8s_A          249 IPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-TEDGR---ILTDRGQR  324 (353)
T ss_dssp             CTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-EEEEE---ESGGGCCC
T ss_pred             cCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-eeeEE---cccCCCCc
Confidence                           1111112234455554321    2236777777778888888775421 11110   11222347


Q ss_pred             eEEEEEcCCCCEEEEEe-CCCc
Q 009203          470 LINQSWSPDGLYITSGS-ADPV  490 (540)
Q Consensus       470 v~~~~~sp~g~~l~sg~-~dg~  490 (540)
                      +..+++.|||.++++.. .+|.
T Consensus       325 p~~v~~~pdG~lyv~td~~~g~  346 (353)
T 2g8s_A          325 IRDVRTGPDGYLYVLTDESSGE  346 (353)
T ss_dssp             EEEEEECTTSCEEEEECSTTEE
T ss_pred             eeEEEECCCCcEEEEEeCCCCE
Confidence            89999999998766543 3443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.87  E-value=0.00018  Score=75.04  Aligned_cols=226  Identities=8%  Similarity=-0.046  Sum_probs=127.4

Q ss_pred             CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCC-ceeEEeecCCC
Q 009203          245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKG-RACVTFLDDKP  323 (540)
Q Consensus       245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~  323 (540)
                      ...|+..++........+         .....+..++|++.+..|+.+   ....+.|+.+++..... ......+..  
T Consensus       385 ~~~I~~id~~~~~~~~~~---------~~~~~p~gla~d~~~~~Ly~s---D~~~~~I~~~~~~g~~~~~~~~~~i~~--  450 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLI---------PNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHGVSSYDTVISR--  450 (699)
T ss_dssp             TTC-CEECTTSCCEECCS---------CCCTTCCCCEEETTTTEEEEC---CTTTTSBEEEESCCCCC-CCCCCBCCS--
T ss_pred             ccceEEEeCCCCcceeee---------ccCcceEEEccccccCeEEEE---ecCCCeEEEEecCCCCCCcceEEEEeC--
Confidence            356777777654422111         112346789999977777665   25668899999875100 011111111  


Q ss_pred             CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-C-CeEEEE
Q 009203          324 HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-D-KRIIGF  401 (540)
Q Consensus       324 ~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d-g~i~iw  401 (540)
                       .......|++.+..+.++++-...+.|.++++.....    ..+. .........|++.|.+.+|+.+.. . +.|.++
T Consensus       451 -~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~----~~l~-~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~  524 (699)
T 1n7d_A          451 -DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLF-REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  524 (699)
T ss_dssp             -CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE----EEEC-CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred             -CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce----EEEE-eCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence             0123567888763566666656678899999876542    2221 112345678999986665555443 2 678888


Q ss_pred             ECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC
Q 009203          402 DAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL  480 (540)
Q Consensus       402 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~  480 (540)
                      ++........ ...-.....++++|.+.  .++++-+..+.|..+|+........ +    ..........+|++..+ .
T Consensus       525 ~~dG~~~~~l~~~~l~~PnGlavd~~~~--~LY~aD~~~~~I~~~d~dG~~~~~~-~----~~~~~~~~P~glavd~~-~  596 (699)
T 1n7d_A          525 GLNGVDIYSLVTENIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNGGNRKTI-L----EDEKRLAHPFSLAVFED-K  596 (699)
T ss_dssp             CSSSCCCCEESCSSCSSCCCEEECTTTC--CEEEEETTTTEEEEECSSSSCCEEE-C----CCSSSCSSCCCCEEETT-E
T ss_pred             eCCCCCeeEEEeCCCCCccEEEEeccCC--EEEEEecCCCeEEEEccCCCceEEE-E----ecCCcCCCceEeEEECC-E
Confidence            8764322111 12223456788887653  3566667778999999975332211 1    00111223445666543 4


Q ss_pred             EEEEEeCCCcEEEEeccC
Q 009203          481 YITSGSADPVIHLFDIRY  498 (540)
Q Consensus       481 ~l~sg~~dg~i~iwd~~~  498 (540)
                      ++++....+.|..++..+
T Consensus       597 lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          597 VFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             EEEECSTTTCEEEEETTT
T ss_pred             EEEEeCCCCeEEEEEccC
Confidence            555556678899998765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.84  E-value=0.02  Score=60.21  Aligned_cols=205  Identities=11%  Similarity=-0.000  Sum_probs=126.0

Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC---cceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS---GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~---~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      ....+.+|+|.+..+.++++-...+.|+.+++.....   ...+.       .........|++.+.+..|+.+   +..
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-------~~~l~~P~GLAvD~~~~~LY~t---D~~  491 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWT---DSV  491 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-------CSSCSCCCEEEEETTTTEEEEE---ETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-------ecCCCCcceeeeeecCCcEEEE---ecC
Confidence            3466889999986567777777778899998875321   11121       1123446789999887666554   267


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-CcEEEEecCCCCCccccceeecccCCcce
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-HAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .+.|.+.+++..   .....+..   .......|++.|..+.++++-... +.|...++.....    ..+. .......
T Consensus       492 ~~~I~v~~ldG~---~~~~l~~~---~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~----~~lv-~~~l~~P  560 (791)
T 3m0c_C          492 LGTVSVADTKGV---KRKTLFRE---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLV-TENIQWP  560 (791)
T ss_dssp             TTEEEEEETTSS---SEEEEEEC---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE----EEEE-CSSCSCE
T ss_pred             CCeEEEEeCCCC---eEEEEEeC---CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce----EEEE-eCCCCCc
Confidence            889999999843   22222221   123488999999445555554333 6788888876542    2222 2233568


Q ss_pred             eEEEeccCCCEEEEE-eCCCeEEEEECCCCCeeeeecc---CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          378 MGVAGMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQI---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      ..|++++.+..|+.+ ...+.|..+|+...........   -....+++...+    .++++-...+.|...|..++.
T Consensus       561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~----~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED----KVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT----EEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC----EEEEEECCCCEEEEEeCCCCc
Confidence            899999766666655 4467899999975443322221   234456665433    466666777888888876554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.83  E-value=0.0036  Score=58.03  Aligned_cols=190  Identities=12%  Similarity=0.144  Sum_probs=115.6

Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC---CCC---E-EEEEec--CCcEEEEecC--CCCCcccc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW---ENP---C-FATGGS--DHAVVLWSER--DAEDSWKP  365 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~---~-l~s~~~--dg~i~iwd~~--~~~~~~~~  365 (540)
                      ...+-+.+||+. +   +.+..+..     +.++.+..-|.   .+.   + +++.-.  +++|.+|++.  ++.    +
T Consensus        47 ~k~~gL~Vydl~-G---~~l~~~~~-----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~----l  113 (355)
T 3amr_A           47 NKKSGLVVYSLD-G---KMLHSYNT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----L  113 (355)
T ss_dssp             ETTTEEEEEETT-S---CEEEEECC-----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----E
T ss_pred             cCCCCEEEEcCC-C---cEEEEccC-----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----e
Confidence            567889999994 5   45666643     45777766651   111   2 233333  5789999774  332    1


Q ss_pred             ceeecc-----cCCcceeEEEe--ccC-CC-EEEEEeCCCeEEEEECC---C----CCeeeeeccCccEEEEeecCCCCC
Q 009203          366 KALHRN-----LHSSAVMGVAG--MQQ-KQ-IVLSAGADKRIIGFDAG---V----GRADFKHQIESKCMSVLPNPCDFN  429 (540)
Q Consensus       366 ~~~~~~-----~~~~~v~~l~~--s~~-~~-~l~~~~~dg~i~iwd~~---~----~~~~~~~~~~~~~~~~~~~~~~~~  429 (540)
                      ..+...     .....+..+|+  +|. +. ++++...+|.+..|++.   .    .+.+..+...+..-.+..++..  
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~--  191 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEY--  191 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTT--
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCC--
Confidence            222110     11156777887  664 43 67888889999999883   2    2445667777788888888755  


Q ss_pred             ceEEEEEcCCCeEEEEECCCCc----ceeeeeccccccCccccCeEEEEE--cCCCC-EEEEEe-CCCcEEEEeccCCCC
Q 009203          430 LFMVQTGTPGRQLRLYDIRLRQ----TEIHAFGWKQESSESQSALINQSW--SPDGL-YITSGS-ADPVIHLFDIRYSAN  501 (540)
Q Consensus       430 ~~~l~~~~~dg~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~--sp~g~-~l~sg~-~dg~i~iwd~~~~~~  501 (540)
                       ..|+.+-.+..|..||..-..    ..+..++    .......+..|++  .++|+ ||++++ .++...+||.... .
T Consensus       192 -g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~----~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~-~  265 (355)
T 3amr_A          192 -GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD----GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK-N  265 (355)
T ss_dssp             -TEEEEEETTTEEEEEECSTTSCSCCEEEEEBS----SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT-C
T ss_pred             -CeEEEecccceEEEEeCCcCCCCCceEEEEec----CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC-C
Confidence             478888888778888855221    1121111    1122236788887  55665 665555 6789999999732 4


Q ss_pred             cccccc
Q 009203          502 KPSQSI  507 (540)
Q Consensus       502 ~~~~~~  507 (540)
                      +.+..|
T Consensus       266 ~~vg~f  271 (355)
T 3amr_A          266 KYVADF  271 (355)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            455555

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.83  E-value=0.04  Score=56.51  Aligned_cols=228  Identities=7%  Similarity=-0.057  Sum_probs=141.4

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT  317 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~  317 (540)
                      +|+.+ ....|+..++........+..       .....+..++|++.+..|+.+   +..++.|..++++...   ...
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~l~~d~~~~~lywt---D~~~~~I~r~~~~g~~---~~~   73 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPL-------TGVKEASALDFDVTDNRIYWT---DISLKTISRAFMNGSA---LEH   73 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCC-------CSCSCEEEEEEETTTTEEEEE---ETTTTEEEEEETTSCS---CEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEc-------CCCCceEEEEEECCCCEEEEE---ECCCCeEEEEECCCCC---cEE
Confidence            34433 346789899876543221111       122447789999976666554   1678899999987532   122


Q ss_pred             eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC--C
Q 009203          318 FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA--D  395 (540)
Q Consensus       318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~--d  395 (540)
                      .+..   ....+..+++.+..++++++-...+.|.+.++.....    ..+. ........+|++.|....|+....  .
T Consensus        74 v~~~---g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~----~~l~-~~~l~~P~~iavdp~~G~lY~tD~g~~  145 (628)
T 4a0p_A           74 VVEF---GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR----QVLV-WKDLDSPRALALDPAEGFMYWTEWGGK  145 (628)
T ss_dssp             EECS---SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC----EEEE-CSSCCCEEEEEEETTTTEEEEEECSSS
T ss_pred             EEeC---CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE----EEEE-eCCCCCcccEEEccCCCeEEEeCCCCC
Confidence            2221   1134778999874566666666678899999976542    2222 123456789999986555555542  5


Q ss_pred             CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEE
Q 009203          396 KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSW  475 (540)
Q Consensus       396 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  475 (540)
                      +.|...++...........-.....+++++.+.  .+.++-...+.|..+|+.......  +      ........++++
T Consensus       146 ~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~--~LY~aD~~~~~I~~~d~dG~~~~v--~------~~~l~~P~glav  215 (628)
T 4a0p_A          146 PKIDRAAMDGSERTTLVPNVGRANGLTIDYAKR--RLYWTDLDTNLIESSNMLGLNREV--I------ADDLPHPFGLTQ  215 (628)
T ss_dssp             CEEEEEETTSCSCEEEECSCSSEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEE--E------EECCSCEEEEEE
T ss_pred             CEEEEEeCCCCceEEEECCCCCcceEEEccccC--EEEEEECCCCEEEEEcCCCCceEE--e------eccCCCceEEEE
Confidence            688888887554433334445678888888643  456666777899999997654422  1      111234567777


Q ss_pred             cCCCCEEEEEeCCCcEEEEeccC
Q 009203          476 SPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       476 sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .. +.++++-...+.|...|..+
T Consensus       216 ~~-~~ly~tD~~~~~I~~~dk~t  237 (628)
T 4a0p_A          216 YQ-DYIYWTDWSRRSIERANKTS  237 (628)
T ss_dssp             ET-TEEEEEETTTTEEEEEETTT
T ss_pred             EC-CEEEEecCCCCEEEEEECCC
Confidence            64 44555555678888888655

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.77  E-value=0.015  Score=55.13  Aligned_cols=248  Identities=10%  Similarity=0.013  Sum_probs=123.6

Q ss_pred             ceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecC-CCCcccceeEEEEeCC---CCCEEEEEec----
Q 009203          277 PEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDD-KPHVKGIINSIIFLPW---ENPCFATGGS----  347 (540)
Q Consensus       277 V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~---~~~~l~s~~~----  347 (540)
                      ...|+|.|+|+ ++++     ...|.|++++.... ....+..+.. .....+....|+|+|+   ++.+.++-+.    
T Consensus        20 P~~i~~~pdG~~l~V~-----e~~G~i~~~~~~g~-~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~   93 (353)
T 2g8s_A           20 PWALAFLPDNHGMLIT-----LRGGELRHWQAGKG-LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD   93 (353)
T ss_dssp             EEEEEECSTTCCEEEE-----ETTTEEEEEETTTE-ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred             cEEEEEcCCCCEEEEE-----eCCceEEEEeCCCc-eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence            56899999999 6655     46799999985421 1011111110 0011234789999993   3444444332    


Q ss_pred             ---CCcEEEEecCCCCC-ccccceee-c-c---cCCcceeEEEeccCCCEEEEEeC-------------CCeEEEEECCC
Q 009203          348 ---DHAVVLWSERDAED-SWKPKALH-R-N---LHSSAVMGVAGMQQKQIVLSAGA-------------DKRIIGFDAGV  405 (540)
Q Consensus       348 ---dg~i~iwd~~~~~~-~~~~~~~~-~-~---~~~~~v~~l~~s~~~~~l~~~~~-------------dg~i~iwd~~~  405 (540)
                         ...|..|++..... +.....+. . .   ........|+|.|||.++++.+.             .|.|.-+|...
T Consensus        94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG  173 (353)
T 2g8s_A           94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG  173 (353)
T ss_dssp             SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred             CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence               23566666654311 01111111 1 0   01112467999999976666433             24677777763


Q ss_pred             CC------------eeeee-ccCccEEEEeecCCCCCceEEEEE-cCCCeEEEEECCCCccee---ee---------e--
Q 009203          406 GR------------ADFKH-QIESKCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQTEI---HA---------F--  457 (540)
Q Consensus       406 ~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~---~~---------~--  457 (540)
                      .-            ..... ........++|+|...  .++++- +.++.=.|.-+..+....   ..         +  
T Consensus       174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g--~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~  251 (353)
T 2g8s_A          174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSN--ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE  251 (353)
T ss_dssp             CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTT--EEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred             CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCC--CEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence            21            11111 1123466788888321  333332 222111222222111100   00         0  


Q ss_pred             -------ccc---cccCccccCeEEEEEcC-------CCCEEEEEeCCCcEEEEeccCCCCccccc---ccccccceeEE
Q 009203          458 -------GWK---QESSESQSALINQSWSP-------DGLYITSGSADPVIHLFDIRYSANKPSQS---IRAHQKRVFKA  517 (540)
Q Consensus       458 -------~~~---~~~~~~~~~v~~~~~sp-------~g~~l~sg~~dg~i~iwd~~~~~~~~~~~---~~~h~~~i~~l  517 (540)
                             +..   ... .+...+..++|..       +|.++++.-..+.|...++..  +..+..   +......+..+
T Consensus       252 ~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~rp~~v  328 (353)
T 2g8s_A          252 AKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG--DKVTEDGRILTDRGQRIRDV  328 (353)
T ss_dssp             CCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET--TEEEEEEEESGGGCCCEEEE
T ss_pred             ccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC--CeEeeeEEcccCCCCceeEE
Confidence                   000   000 1223577788863       577777777778888888874  332211   22223478999


Q ss_pred             EEcCCCCEEEEEE-cCCcE
Q 009203          518 VWHYSHPLLISIS-SDLNI  535 (540)
Q Consensus       518 ~~s~~~~~l~s~~-~dg~v  535 (540)
                      ++.|||.++++.. .+|.|
T Consensus       329 ~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          329 RTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             EECTTSCEEEEECSTTEEE
T ss_pred             EECCCCcEEEEEeCCCCEE
Confidence            9999999766543 34533

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.70  E-value=0.033  Score=52.04  Aligned_cols=241  Identities=14%  Similarity=0.139  Sum_probs=125.5

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeec-CCCCcccceeEEEEeCC---CCCEEEEEe--cCC
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLD-DKPHVKGIINSIIFLPW---ENPCFATGG--SDH  349 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~---~~~~l~s~~--~dg  349 (540)
                      ..+.|+|.|+|.++++-    ...|.|++++...+.. ..+..+. ......+....|+|+|+   ++.+.++-+  .++
T Consensus        33 ~P~~ia~~pdG~llVte----r~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~  107 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSS----RDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN  107 (347)
T ss_dssp             SEEEEEECTTSCEEEEE----TTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred             CceEEEEcCCCcEEEEE----ecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence            35789999999988886    5589999998665421 2222221 11112345889999993   243444322  345


Q ss_pred             cEEEEecCCCC----Cccccceeec---ccCCcceeEEEeccCCCEEEEEeC-------------CCeEEEEECCCC---
Q 009203          350 AVVLWSERDAE----DSWKPKALHR---NLHSSAVMGVAGMQQKQIVLSAGA-------------DKRIIGFDAGVG---  406 (540)
Q Consensus       350 ~i~iwd~~~~~----~~~~~~~~~~---~~~~~~v~~l~~s~~~~~l~~~~~-------------dg~i~iwd~~~~---  406 (540)
                      .|.-|.+..+.    .......+..   .........|+|.|||.++++.+.             .|.|.-++....   
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~  187 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAP  187 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCT
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccC
Confidence            56666665421    1111121111   111123467999999987777542             355555565422   


Q ss_pred             ------CeeeeeccCccEEEEeecCCCCCceEEEEE-cCCCeEEEEECCCCcceeeeecccc---------------ccC
Q 009203          407 ------RADFKHQIESKCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQTEIHAFGWKQ---------------ESS  464 (540)
Q Consensus       407 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~---------------~~~  464 (540)
                            ..++... ......++|+|.+   .++++- +.++.=.|.-+..+..    +++..               ...
T Consensus       188 ~nPf~~~~i~a~G-~RNp~Gla~dp~G---~L~~~d~g~~~~deln~i~~G~n----yGwP~~~g~~~~~~~~~P~~~~~  259 (347)
T 3das_A          188 GNPFPGSPVYSYG-HRNVQGLAWDDKQ---RLFASEFGQDTWDELNAIKPGDN----YGWPEAEGKGGGSGFHDPVAQWS  259 (347)
T ss_dssp             TCSSTTCCEEEBC-CSBCCEEEECTTC---CEEEEECCSSSCEEEEEECTTCB----CCTTTCCSSCCCTTCCCCSEEEC
T ss_pred             CCCCCCCeEEeeC-CCCcceEEECCCC---CEEEEecCCCCCceeeEEcCCCE----ecCCcccCCCCCccccCCcEecC
Confidence                  0111111 1234567788754   233332 2232222222222211    11110               011


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC--CcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA--NKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       465 ~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      .+......++|. +|..++..-..+.|....+....  .+....+.+..+.+.+|+..|||.++++.+
T Consensus       260 ~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          260 TDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            112356777876 46666666666777777776421  111223334456899999999998777654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.68  E-value=0.00047  Score=71.92  Aligned_cols=204  Identities=11%  Similarity=0.012  Sum_probs=116.9

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCC---CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR---GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      ..+.+|+|+++++.++++-...+.|+.+++...   .....+.       .........|++.+.+..|+.+   ....+
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-------~~~~~~P~glavD~~~g~LY~t---D~~~~  475 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------SRDIQAPDGLAVDWIHSNIYWT---DSVLG  475 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-------CSCC--CCCEECCCSSSBCEEC---CTTTS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-------eCCCCCcceEEEEeeCCcEEEE---eccCC
Confidence            456789999864555566556788999988751   1111111       0111235678888655544443   15678


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-CcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-HAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      .|.++++...   .....+..   .......|++.|..+.++++-... +.|..+++.....    ..+. .......+.
T Consensus       476 ~I~v~d~dg~---~~~~l~~~---~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----~~l~-~~~l~~PnG  544 (699)
T 1n7d_A          476 TVSVADTKGV---KRKTLFRE---QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSLV-TENIQWPNG  544 (699)
T ss_dssp             CEEEEBSSSC---CEEEECCC---SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----CEES-CSSCSSCCC
T ss_pred             eEEEEecCCC---ceEEEEeC---CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----eEEE-eCCCCCccE
Confidence            9999998753   22222221   123467889998445555554333 6788888765431    2221 112345678


Q ss_pred             EEeccCCCEE-EEEeCCCeEEEEECCCCCeeeeec---cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          380 VAGMQQKQIV-LSAGADKRIIGFDAGVGRADFKHQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       380 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      |+|+|++..| ++-+..+.|..+|+..........   .......+++...    .++++....+.|..+|..+++.
T Consensus       545 lavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~----~lywtd~~~~~V~~~d~~~G~~  617 (699)
T 1n7d_A          545 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED----KVFWTDIINEAIFSANRLTGSD  617 (699)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT----EEEEECSTTTCEEEEETTTEEE
T ss_pred             EEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC----EEEEEeCCCCeEEEEEccCCCc
Confidence            9999875555 445557789999987433222211   1122334444332    4666667778899999876553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.56  E-value=0.099  Score=53.56  Aligned_cols=200  Identities=13%  Similarity=0.075  Sum_probs=123.2

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      -..+..|+|+++++.++++-..++.|..+++..... ..+..       ........+++.+.+..|+.+   +...+.|
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~-------~g~~~P~GlAvD~~~~~LY~t---D~~~~~I  104 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVE-------FGLDYPEGMAVDWLGKNLYWA---DTGTNRI  104 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-------SSCSCCCEEEEETTTTEEEEE---ETTTTEE
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEe-------CCCCCcceEEEEeCCCEEEEE---ECCCCEE
Confidence            356889999997677777777789999999875432 22221       111346689998876666554   2677899


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEE-ecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATG-GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      .+.+++... .  ...+..   .-....+|++.|..+.++++- +..+.|...++.....    ..+..  .......|+
T Consensus       105 ~v~~~dG~~-~--~~l~~~---~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~----~~l~~--~~~~P~Gla  172 (628)
T 4a0p_A          105 EVSKLDGQH-R--QVLVWK---DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----TTLVP--NVGRANGLT  172 (628)
T ss_dssp             EEEETTSTT-C--EEEECS---SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEEC--SCSSEEEEE
T ss_pred             EEEecCCCc-E--EEEEeC---CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce----EEEEC--CCCCcceEE
Confidence            999997542 1  122211   124478999999455555554 2256788888876542    23322  345688999


Q ss_pred             eccCCCEEEEE-eCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203          382 GMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL  449 (540)
Q Consensus       382 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  449 (540)
                      +++++..|+.+ ...+.|..+|+.................++...+    .++++-...+.|...|..+
T Consensus       173 lD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~----~ly~tD~~~~~I~~~dk~t  237 (628)
T 4a0p_A          173 IDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQD----YIYWTDWSRRSIERANKTS  237 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETT----EEEEEETTTTEEEEEETTT
T ss_pred             EccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECC----EEEEecCCCCEEEEEECCC
Confidence            99976666555 4567899999875443222222234445555432    3555555566666666543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.53  E-value=0.021  Score=62.41  Aligned_cols=245  Identities=10%  Similarity=0.070  Sum_probs=134.0

Q ss_pred             ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203          246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV  325 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  325 (540)
                      .+|.|-|+..+..+.+....           --+.-.+|..+.||.-     ...+++|||+.+..   .+....-    
T Consensus        48 ~~vvIidl~~~~~~~rrpi~-----------AdsAIMnP~~~iiALr-----ag~~lQiFnl~~k~---klks~~~----  104 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALK-----AGKTLQIFNIEMKS---KMKAHTM----  104 (1630)
T ss_pred             ceEEEEECCCCCCccccccc-----------chhhccCCCcceEEEe-----cCCeEEEeehHHhh---hhccccc----
Confidence            47889999886644222111           1235568888877774     58899999998752   2333322    


Q ss_pred             ccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc--cCCcceeEEEeccCCCEEEEEeC-------CC
Q 009203          326 KGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN--LHSSAVMGVAGMQQKQIVLSAGA-------DK  396 (540)
Q Consensus       326 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~-------dg  396 (540)
                      ...|.-=.|-.  .+.|+..+ +..|+.|++.+....  .+.+.+.  -....|.....+++.++++..+-       .|
T Consensus       105 ~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P--~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G  179 (1630)
T 1xi4_A          105 TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG  179 (1630)
T ss_pred             CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCcc--HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccc
Confidence            23466667763  34454444 367999999753220  1222221  12456777788888888876543       57


Q ss_pred             eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEc---CCCeEEEEECCCC---ccee--eeeccccccCcccc
Q 009203          397 RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGT---PGRQLRLYDIRLR---QTEI--HAFGWKQESSESQS  468 (540)
Q Consensus       397 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~v~i~d~~~~---~~~~--~~~~~~~~~~~~~~  468 (540)
                      .+.+|..+.+..-....+......+..........+++.+.   ..+.++|.++...   ....  ..............
T Consensus       180 ~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D  259 (1630)
T 1xi4_A          180 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND  259 (1630)
T ss_pred             eeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC
Confidence            88999887654311111111111111110000001222221   2368889888653   1111  00000001112233


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEc
Q 009203          469 ALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH  520 (540)
Q Consensus       469 ~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s  520 (540)
                      -..++..|+....+...+.-|.|++||+.+  +.++..-+-...+|...+-+
T Consensus       260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t--~~~i~~~ris~~~iF~~~~~  309 (1630)
T 1xi4_A          260 FPVAMQISEKHDVVFLITKYGYIHLYDLET--GTCIYMNRISGETIFVTAPH  309 (1630)
T ss_pred             cceEEEeccccCEEEEEecCceEEEEeccc--chhhhhccccCCceEEeccC
Confidence            456788888888888899999999999998  56555444344444444433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.51  E-value=0.048  Score=50.55  Aligned_cols=196  Identities=11%  Similarity=0.098  Sum_probs=115.9

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC----CCe--EEEEeecCCC--CCeEEEEec
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ----GNS--LFSAHTADSG--DSQISVLNL  307 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~--l~s~~~~~~~--d~~i~vwd~  307 (540)
                      ..+++.....+-+.+||+ .++.+..+.        .  +.++.+..-|+    |+.  |+.++.  ..  +++|.+|++
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~--------~--g~~nnVD~r~~~~l~g~~~dla~as~--R~~~~n~l~vf~i  106 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYN--------T--GKLNNVDIRYDFPLNGKKVDIAAASN--RSEGKNTIEIYAI  106 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEEC--------C--SCEEEEEEEEEEEETTEEEEEEEEEE--CSTTCCEEEEEEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEcc--------C--CCcccEEEecccccCCceEeEEEEeC--CCCCCCeEEEEEE
Confidence            445666667788999999 666655542        1  33566666552    322  333321  44  689999977


Q ss_pred             CCCCCceeEEeecCC--C--CcccceeEEEE--eCCCCC-EEEEEecCCcEEEEecCC---CCCccccceeecccCCcce
Q 009203          308 NKTKGRACVTFLDDK--P--HVKGIINSIIF--LPWENP-CFATGGSDHAVVLWSERD---AEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       308 ~~~~~~~~~~~~~~~--~--~~~~~v~~~~~--~p~~~~-~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~v  377 (540)
                      +...  ..+..+...  +  .....+..+++  +|..+. ++++...+|.+..|++..   +...  ...+....-.+.+
T Consensus       107 Dp~~--~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~--~~lVR~f~lgsq~  182 (355)
T 3amr_A          107 DGKN--GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS--GKKVRAFKMNSQT  182 (355)
T ss_dssp             CTTT--CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE--EEEEEEEECSSCE
T ss_pred             CCCC--CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc--ceEEEEecCCCCc
Confidence            5321  124444221  1  11145677777  774454 577778889999999843   2211  1112222234678


Q ss_pred             eEEEeccCCCEEEEEeCCCeEEEEECC-----CCCeeeeeccC---ccEEEEee--cCCCCCceEEEEEcCCCeEEEEEC
Q 009203          378 MGVAGMQQKQIVLSAGADKRIIGFDAG-----VGRADFKHQIE---SKCMSVLP--NPCDFNLFMVQTGTPGRQLRLYDI  447 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~l~~~~~dg~v~i~d~  447 (540)
                      ..+...+....|+.+-.+.-|..+|.+     +++.+......   ..+-.++.  .+++ .+.+++++-.+++..+||.
T Consensus       183 EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g-~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          183 EGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADG-KGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             EEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGG-CEEEEEEEGGGTEEEEEES
T ss_pred             ceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCC-CEEEEEEcCCCCEEEEEEC
Confidence            899999888999999998888888855     23333332222   23444444  4433 2246666667889999999


Q ss_pred             CC
Q 009203          448 RL  449 (540)
Q Consensus       448 ~~  449 (540)
                      ..
T Consensus       262 ~~  263 (355)
T 3amr_A          262 QG  263 (355)
T ss_dssp             ST
T ss_pred             CC
Confidence            73

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.50  E-value=0.15  Score=56.02  Aligned_cols=75  Identities=20%  Similarity=0.238  Sum_probs=47.6

Q ss_pred             cCceEEEEEecCC-----CcEEEEEeC-CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec--CCCeEEEEee
Q 009203          223 KRKLRSLSLNPVN-----EQLFVTSAL-DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP--QGNSLFSAHT  294 (540)
Q Consensus       223 ~~~V~~l~~spd~-----~~~l~tg~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~--~~~~l~s~~~  294 (540)
                      .+.|.|+++.|..     +.++|.|.+ |++|+|+++.+.+.......       +-.....++.+..  ...+|..|  
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L-------~~~~~p~si~l~~~~~~~~L~ig--  623 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-------GGEIIPRSILMTTFESSHYLLCA--  623 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC-------CSSCCEEEEEEEEETTEEEEEEE--
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC-------CCCCCCcEEEEEEeCCCcEEEEE--
Confidence            4689999998632     479999997 99999999986543322111       1112234444432  23477777  


Q ss_pred             cCCCCCeEEEEecC
Q 009203          295 ADSGDSQISVLNLN  308 (540)
Q Consensus       295 ~~~~d~~i~vwd~~  308 (540)
                        -.||.+..+.++
T Consensus       624 --l~dG~l~~~~~d  635 (1158)
T 3ei3_A          624 --LGDGALFYFGLN  635 (1158)
T ss_dssp             --ETTSEEEEEEEC
T ss_pred             --eCCCeEEEEEEc
Confidence              788888666554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.50  E-value=0.12  Score=52.99  Aligned_cols=288  Identities=10%  Similarity=0.009  Sum_probs=151.7

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      -...+.|+++++++++.++-...+.|...++..... ..+..       +......++++..+  .|+.+   +..++.|
T Consensus       170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~~~-------~~~~~P~gi~~~~~--~ly~t---d~~~~~V  236 (619)
T 3s94_A          170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVK-------GSLPHPFALTLFED--ILYWT---DWSTHSI  236 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE-C----------------CCCEEESSS--EEEEE---CTTTCSE
T ss_pred             CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc-EEEEe-------CCCCCceEEEEeCC--EEEEe---cCCCCEE
Confidence            356789999997566666666677888888864322 22211       11122346777654  45544   2567889


Q ss_pred             EEEecCCCCCceeE----------EeecC--CC--C-----cccceeEEEE-----------eCC------C-------C
Q 009203          303 SVLNLNKTKGRACV----------TFLDD--KP--H-----VKGIINSIIF-----------LPW------E-------N  339 (540)
Q Consensus       303 ~vwd~~~~~~~~~~----------~~~~~--~~--~-----~~~~v~~~~~-----------~p~------~-------~  339 (540)
                      ...|..++.....+          ..+..  .+  .     ..+.+..+++           .|.      +       .
T Consensus       237 ~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~  316 (619)
T 3s94_A          237 LACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGA  316 (619)
T ss_dssp             EEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSC
T ss_pred             EEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCC
Confidence            99988776432111          11100  00  0     0011111222           110      1       1


Q ss_pred             -CEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEE-EEeCCCeEEEEECCCCCeeeeeccC-c
Q 009203          340 -PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVL-SAGADKRIIGFDAGVGRADFKHQIE-S  416 (540)
Q Consensus       340 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-~  416 (540)
                       .+|+.+ ..+.|+..++......  ...+. ...-..+.+++|.+.+..|+ +-...+.|+.+++............ .
T Consensus       317 ~~~Ll~~-~~~~i~~i~l~~~~~~--~~~~~-~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~  392 (619)
T 3s94_A          317 TELLLLA-RRTDLRRISLDTPDFT--DIVLQ-LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA  392 (619)
T ss_dssp             SEEEEEE-ESSCEEEEESSSTTCC--CEECC-CSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             ceEEEEE-cccceEEEecCCCccc--eeEEe-ccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCC
Confidence             122222 2356777777654321  01111 11224577899988555555 4445788999998764332222221 3


Q ss_pred             cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe--CCCcEEEE
Q 009203          417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS--ADPVIHLF  494 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~--~dg~i~iw  494 (540)
                      ....++++..+.  .++++-+..+.|.+.++.........       ...-....+++++|...+|+...  ..+.|...
T Consensus       393 ~p~GlAvD~~~~--~lY~tD~~~~~I~v~~~~G~~~~~l~-------~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~  463 (619)
T 3s94_A          393 HPDGIAVDWVAR--NLYWTDTGTDRIEVTRLNGTMRKILI-------SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERA  463 (619)
T ss_dssp             CCCEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEE-------CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CcCceEEecccC--cEEEEeCCCCcEEEEeCCCCeEEEEE-------ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEE
Confidence            444566654332  46667777889999998865432111       12234689999999744444433  23667777


Q ss_pred             eccCCCCcccccc-cccccceeEEEEcCCCCEEEEEE-cCCcEEEEe
Q 009203          495 DIRYSANKPSQSI-RAHQKRVFKAVWHYSHPLLISIS-SDLNIGLHK  539 (540)
Q Consensus       495 d~~~~~~~~~~~~-~~h~~~i~~l~~s~~~~~l~s~~-~dg~v~iw~  539 (540)
                      +++.   .....+ ...-...+.|++++++..|..+. ..+.|...+
T Consensus       464 ~~dG---~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~  507 (619)
T 3s94_A          464 ALDG---SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMN  507 (619)
T ss_dssp             ETTS---CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCC---CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEe
Confidence            7763   222222 22334678899998766655554 345566554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.42  E-value=0.01  Score=50.69  Aligned_cols=184  Identities=8%  Similarity=-0.065  Sum_probs=96.1

Q ss_pred             CCEEEEEecCCcEEEEecCCCCC-cc--ccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC
Q 009203          339 NPCFATGGSDHAVVLWSERDAED-SW--KPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE  415 (540)
Q Consensus       339 ~~~l~s~~~dg~i~iwd~~~~~~-~~--~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  415 (540)
                      ..+|+....| +++.=....+.. .+  +...+-..+ -..+..++|+|+|.+.++  .+|.++-.+..+.....-....
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~g-w~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGG-WSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSS-CTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccc-cccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            3456666666 555444433321 11  122221111 246789999998886666  7788888777553332111111


Q ss_pred             cc--------EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC
Q 009203          416 SK--------CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA  487 (540)
Q Consensus       416 ~~--------~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~  487 (540)
                      ..        -.++.|+|++   .+.++  .||.|+-++-.+.............-..--..+..|.|+|+|.+.++.  
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G---~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--  152 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNG---YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--  152 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTS---CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--
T ss_pred             cEecccccccceEEEECCCC---CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--
Confidence            22        2578888887   34444  569998887644322111000000001112367999999999888777  


Q ss_pred             CCcEEEEeccCCCCccc---ccc-c-ccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203          488 DPVIHLFDIRYSANKPS---QSI-R-AHQKRVFKAVWHYSHPLLISISSDLNI  535 (540)
Q Consensus       488 dg~i~iwd~~~~~~~~~---~~~-~-~h~~~i~~l~~s~~~~~l~s~~~dg~v  535 (540)
                      |+.++-+..........   .+. . .....-..+.|.++|.+.+..  +|.+
T Consensus       153 dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          153 GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            77754333222111000   011 1 222244557799999876665  7744

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.41  E-value=0.084  Score=49.26  Aligned_cols=236  Identities=11%  Similarity=0.065  Sum_probs=122.1

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ...+.+|.|.|  +..++.| .++.|  |...++....+.....    ..+...+..+.+.+++..++++    . ++.|
T Consensus        79 ~~~~~~i~~~~--~~~~~~g-~~g~i--~~S~DgG~tW~~~~~~----~~~~~~~~~i~~~~~~~~~~~~----~-~g~v  144 (327)
T 2xbg_A           79 DYRFNSVSFQG--NEGWIVG-EPPIM--LHTTDGGQSWSQIPLD----PKLPGSPRLIKALGNGSAEMIT----N-VGAI  144 (327)
T ss_dssp             CCEEEEEEEET--TEEEEEE-ETTEE--EEESSTTSSCEECCCC----TTCSSCEEEEEEEETTEEEEEE----T-TCCE
T ss_pred             CccEEEEEecC--CeEEEEE-CCCeE--EEECCCCCCceECccc----cCCCCCeEEEEEECCCCEEEEe----C-CccE
Confidence            45689999986  4555544 45543  3333333222222110    1223446788887777766665    3 5543


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE-EecCCCCCccccceeecccCCcceeEEE
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL-WSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      .. ..+.+..-..+  ...   ....+..+.+.+ ++.+++.+. +|.+.. +|- .+. .|  ..+. ......+..+.
T Consensus       145 ~~-S~DgG~tW~~~--~~~---~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~-gG~-tW--~~~~-~~~~~~~~~~~  211 (327)
T 2xbg_A          145 YR-TKDSGKNWQAL--VQE---AIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEP-GQT-AW--EPHN-RTTSRRLHNMG  211 (327)
T ss_dssp             EE-ESSTTSSEEEE--ECS---CCCCEEEEEECT-TSCEEEEET-TSSEEEEECT-TCS-SC--EEEE-CCSSSCEEEEE
T ss_pred             EE-EcCCCCCCEEe--ecC---CCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCC-CCC-ce--eECC-CCCCCccceeE
Confidence            22 12223221112  111   234688999999 777776654 455443 332 122 12  2221 23456788999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeeeec-----cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-----IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      +.+++..+ .++.+|.+++.+...++.-....     ....+.++.+.+.+   .+++++. ++.| ++..+.+.. ...
T Consensus       212 ~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~---~~~~~g~-~g~i-~~S~DgG~t-W~~  284 (327)
T 2xbg_A          212 FTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN---EVWLAGG-AGAL-LCSQDGGQT-WQQ  284 (327)
T ss_dssp             ECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS---CEEEEES-TTCE-EEESSTTSS-CEE
T ss_pred             ECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCC---EEEEEeC-CCeE-EEeCCCCcc-cEE
Confidence            99888765 45567888777533233222111     12346777787654   4555544 6666 344443332 111


Q ss_pred             eccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203          457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI  496 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~  496 (540)
                      ..   ........+.++.|.+++. +++++.+|.|.-++-
T Consensus       285 ~~---~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          285 DV---DVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             CG---GGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             cC---ccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            10   1111234577888875555 555567897776654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.38  E-value=0.047  Score=51.23  Aligned_cols=186  Identities=12%  Similarity=0.110  Sum_probs=104.4

Q ss_pred             eeEEEEeCCCCCEEEEE------------ecCCcEEEEecCCCCCccccceeeccc-----CCcceeEEEecc--CCC-E
Q 009203          329 INSIIFLPWENPCFATG------------GSDHAVVLWSERDAEDSWKPKALHRNL-----HSSAVMGVAGMQ--QKQ-I  388 (540)
Q Consensus       329 v~~~~~~p~~~~~l~s~------------~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~l~~s~--~~~-~  388 (540)
                      .-.+...| +|..++++            ..+|.|.++|..+....  ...+...+     .......+.+.+  +|. +
T Consensus        52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~--~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA--VSELEIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCC--EEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc--eEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            45666777 76555554            26899999999853221  12222211     234567777755  353 3


Q ss_pred             EEEE-eC--CCeEEEEECCCC--Ceeee--e--ccCccEEEEeecCCCCCceEEEEEc-----------------CCCeE
Q 009203          389 VLSA-GA--DKRIIGFDAGVG--RADFK--H--QIESKCMSVLPNPCDFNLFMVQTGT-----------------PGRQL  442 (540)
Q Consensus       389 l~~~-~~--dg~i~iwd~~~~--~~~~~--~--~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~dg~v  442 (540)
                      |+++ ..  +.+|.+|++..+  .....  .  ..-.....+...+++   .++++..                 ..|.|
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G---~fyvt~~~~ftd~~~~~~e~~~~~~~g~v  205 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE---HFYATNDHYFIDPYLKSWEMHLGLAWSFV  205 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT---EEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC---CEEecCCcEeCCcccccchhhccCCccEE
Confidence            4444 33  457777776543  22211  1  122456677777766   4555543                 12455


Q ss_pred             EEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCCCcc--cccccccccceeEEEE
Q 009203          443 RLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIRYSANKP--SQSIRAHQKRVFKAVW  519 (540)
Q Consensus       443 ~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~~~~--~~~~~~h~~~i~~l~~  519 (540)
                      ..||..  +....        ...-...+.++||||++.|+.+. ..+.|+.|++... +..  ...+ ...+....+++
T Consensus       206 yr~d~~--~~~~~--------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~-g~l~~~~~~-~~~g~PDGi~v  273 (355)
T 3sre_A          206 TYYSPN--DVRVV--------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN-WTLTPLRVL-SFDTLVDNISV  273 (355)
T ss_dssp             EEECTT--CCEEE--------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-SCEEEEEEE-ECSSEEEEEEE
T ss_pred             EEEECC--eEEEe--------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC-CcEecCEEE-eCCCCCceEEE
Confidence            555543  21111        11223578999999998877654 5688999998742 221  1223 22356788999


Q ss_pred             cC-CCCEEEEEEcC
Q 009203          520 HY-SHPLLISISSD  532 (540)
Q Consensus       520 s~-~~~~l~s~~~d  532 (540)
                      .+ +|.+.+++..+
T Consensus       274 D~e~G~lwva~~~~  287 (355)
T 3sre_A          274 DPVTGDLWVGCHPN  287 (355)
T ss_dssp             CTTTCCEEEEEESC
T ss_pred             eCCCCcEEEEecCC
Confidence            98 59988877544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.24  E-value=0.034  Score=52.73  Aligned_cols=151  Identities=13%  Similarity=0.094  Sum_probs=99.7

Q ss_pred             CCCEEEEEecCCcEEEEecCCCCCccccceeeccc--CCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCe-------
Q 009203          338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL--HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA-------  408 (540)
Q Consensus       338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------  408 (540)
                      ++..++.+- ++.||..++.....   .+.+....  ....|..+..+|+|++|+..+. ..|.|..+-.+..       
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~---Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSL---YHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSS---CEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHH
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCc---ceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccc
Confidence            566666554 47788888875431   33333321  2335788999999999998865 4788888863221       


Q ss_pred             -----eeeec-------cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc-ceeeeeccc---cccCccccCeEE
Q 009203          409 -----DFKHQ-------IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ-TEIHAFGWK---QESSESQSALIN  472 (540)
Q Consensus       409 -----~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~-~~~~~~~~~---~~~~~~~~~v~~  472 (540)
                           ...+.       ....+..+.|+|.+..+..|++-..|+.|++||+.... .+. .+...   .........|.+
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence                 11112       24568999999998888899999999999999998622 122 22100   011233467899


Q ss_pred             EEEcCCCCEEEEEe--CCCcEEEE
Q 009203          473 QSWSPDGLYITSGS--ADPVIHLF  494 (540)
Q Consensus       473 ~~~sp~g~~l~sg~--~dg~i~iw  494 (540)
                      ++|..+|-.|...+  ..|.|+-.
T Consensus       185 ~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          185 LEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999886666644  77888654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.18  E-value=0.2  Score=48.94  Aligned_cols=119  Identities=17%  Similarity=0.216  Sum_probs=64.7

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccC-CCCCCCCceeEEEecC---CCeEEEEeecC---
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL-SPKHRRWPEDIAWHPQ---GNSLFSAHTAD---  296 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~~~~---~~~l~s~~~~~---  296 (540)
                      ...++|+|.|| |+++++-...+.|++++..++.. ..+....... ..........|+|+|+   +..|+.+++..   
T Consensus        27 ~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPD-NQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            35679999996 88777654445788887654432 2221111110 0113456789999996   66666653210   


Q ss_pred             C-C-----CCeEEEEecCCCCC-----ceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203          297 S-G-----DSQISVLNLNKTKG-----RACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS  347 (540)
Q Consensus       297 ~-~-----d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  347 (540)
                      . .     ...|.-|++.....     ...+..+.....|  ....|+|.| ++.++++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H--~~~~l~f~p-DG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGP-DQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECT-TSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCC--CCCeEeECC-CCeEEEEECC
Confidence            0 0     23566666543211     1112223322223  368999999 8888777553

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.11  E-value=0.18  Score=47.05  Aligned_cols=248  Identities=13%  Similarity=0.058  Sum_probs=125.6

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC---CCeEEEEeecCCCCC
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ---GNSLFSAHTADSGDS  300 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~---~~~l~s~~~~~~~d~  300 (540)
                      ..-+.|+|.|| |.++++--..|.|++++...+.. ..+ ................|+|+|+   +..|+..++. ..++
T Consensus        32 ~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~-~~v-~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~-~~~~  107 (347)
T 3das_A           32 NSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRK-TEL-GEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS-ASDN  107 (347)
T ss_dssp             SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCE-EEE-EECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC-SSSE
T ss_pred             CCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcE-eee-cccCceeecCCCCceeeEeccccccCCEEEEEEec-CCCC
Confidence            45789999996 88777765589999987654432 111 1111111223456789999996   4455554322 2445


Q ss_pred             eEEEEecCCCC--------CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-------------CCcEEEEecCCC
Q 009203          301 QISVLNLNKTK--------GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-------------DHAVVLWSERDA  359 (540)
Q Consensus       301 ~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-------------dg~i~iwd~~~~  359 (540)
                      .|.-|.+..+.        ....+..+.....|.  ...|.|.| ++.++++.+.             .|.|.-.+....
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~  184 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE  184 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence            66667665421        112222233222332  46799999 8887777542             244544455432


Q ss_pred             CCccc---cceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCCCe------------------eeeeccC-c
Q 009203          360 EDSWK---PKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVGRA------------------DFKHQIE-S  416 (540)
Q Consensus       360 ~~~~~---~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~------------------~~~~~~~-~  416 (540)
                      -....   -..+...+|. ....++|+|+|.++++-.. |+.=.|--+..+..                  +...... .
T Consensus       185 ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~  263 (347)
T 3das_A          185 PAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA  263 (347)
T ss_dssp             BCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred             ccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence            10000   0012222343 3568999998776665322 22222222222211                  1111111 2


Q ss_pred             cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203          417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                      ....+.|...    .++...-..+.|....+........   ....+.+....+..|+..|||.++++.+
T Consensus       264 ap~G~~~~~g----~~~~~~l~~~~l~~v~~~~~~~~~~---~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          264 SPSGIAYAEG----SVWMAGLRGERLWRIPLKGTAAAAD---PQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CEEEEEEETT----EEEEEESTTCSEEEEEEETTEESSC---CEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCcceEEEcC----ceeeccccCCEEEEEEecCCceecc---eEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            3344444432    3555555556666666654321100   0012233346789999999997766543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.10  E-value=0.24  Score=48.42  Aligned_cols=113  Identities=15%  Similarity=0.209  Sum_probs=62.4

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC---CcccceeEEEEeCCC---CCEEEEEec--
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP---HVKGIINSIIFLPWE---NPCFATGGS--  347 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~---~~~l~s~~~--  347 (540)
                      ..+.|+|.|+|+++++-    ...+.|++++..++.. ..+..+....   ...+....|+|+| +   +..|..+..  
T Consensus        28 ~P~~~a~~pdG~l~V~e----~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~P-df~~~g~lYv~~s~~  101 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTE----RATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHP-DFKNNPYIYISGTFK  101 (454)
T ss_dssp             SEEEEEECTTSCEEEEE----TTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECT-TTTTSCEEEEEEEEE
T ss_pred             CceEEEEcCCCcEEEEE----cCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECC-CcCcCCEEEEEEecc
Confidence            35789999999988875    4445788887654422 2222232211   1234578999999 4   444444332  


Q ss_pred             -----------CCcEEEEecCCCCC-ccccceeec---ccCCcceeEEEeccCCCEEEEEeC
Q 009203          348 -----------DHAVVLWSERDAED-SWKPKALHR---NLHSSAVMGVAGMQQKQIVLSAGA  394 (540)
Q Consensus       348 -----------dg~i~iwd~~~~~~-~~~~~~~~~---~~~~~~v~~l~~s~~~~~l~~~~~  394 (540)
                                 ...|.-|+...... +.....+..   .........|+|.|||.++++.+.
T Consensus       102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                       13455555543210 001111111   111224689999999988777553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.05  E-value=0.18  Score=46.11  Aligned_cols=189  Identities=14%  Similarity=0.141  Sum_probs=94.5

Q ss_pred             CCCeEEEEeecCCCC-----CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----CcEEEE
Q 009203          285 QGNSLFSAHTADSGD-----SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-----HAVVLW  354 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iw  354 (540)
                      ++.+++.|    +.+     ..+.+||+.+......... ...+........+.+   ++.+++.|+.+     ..+.+|
T Consensus        62 ~~~l~v~G----G~~~~~~~~~~~~~d~~~~~~~~W~~~-~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~  133 (301)
T 2vpj_A           62 HDRIYVIG----GYDGRSRLSSVECLDYTADEDGVWYSV-APMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERY  133 (301)
T ss_dssp             TTEEEEEC----CBCSSCBCCCEEEEETTCCTTCCCEEE-CCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEE
T ss_pred             CCEEEEEc----CCCCCccCceEEEEECCCCCCCeeEEC-CCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEE
Confidence            55666665    433     4689999987641001111 111111121222222   66777777654     358889


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-----CeEEEEECCCCCeeeeeccC---ccEEEEeecCC
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-----KRIIGFDAGVGRADFKHQIE---SKCMSVLPNPC  426 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~  426 (540)
                      |+.+.+-    ..+........-.+++. -++.+++.|+.+     ..+.+||+.+++-.......   .....+...  
T Consensus       134 d~~~~~W----~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--  206 (301)
T 2vpj_A          134 DPNIDQW----SMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLN--  206 (301)
T ss_dssp             ETTTTEE----EEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET--
T ss_pred             cCCCCeE----EECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEEC--
Confidence            9887652    11111111111112222 267777777654     35889999876543221111   111222222  


Q ss_pred             CCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEec
Q 009203          427 DFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDI  496 (540)
Q Consensus       427 ~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~  496 (540)
                      +   .+++.|+.+     ..+.+||+.+..=.  .+.   .+.........+.+  ++++++.|+.+     ..+.+||+
T Consensus       207 ~---~i~v~GG~~~~~~~~~v~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          207 D---HIYVVGGFDGTAHLSSVEAYNIRTDSWT--TVT---SMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             T---EEEEECCBCSSSBCCCEEEEETTTTEEE--EEC---CCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred             C---EEEEEeCCCCCcccceEEEEeCCCCcEE--ECC---CCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence            2   466666653     46899999865421  111   11111112233333  67788888765     35778888


Q ss_pred             cC
Q 009203          497 RY  498 (540)
Q Consensus       497 ~~  498 (540)
                      .+
T Consensus       277 ~~  278 (301)
T 2vpj_A          277 II  278 (301)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.89  E-value=0.25  Score=45.18  Aligned_cols=216  Identities=14%  Similarity=0.160  Sum_probs=105.0

Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----CcEEEEecCCCCC-ccccceeecccC
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-----HAVVLWSERDAED-SWKPKALHRNLH  373 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~-~~~~~~~~~~~~  373 (540)
                      ..+.+||+.+..   . ..+...+...... +++..  ++.+++.|+.+     ..+.+||+.+... .|..  +.....
T Consensus        31 ~~~~~~d~~~~~---W-~~~~~~p~~r~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~--~~~~p~  101 (301)
T 2vpj_A           31 DVVEKYDPKTQE---W-SFLPSITRKRRYV-ASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS--VAPMNV  101 (301)
T ss_dssp             CCEEEEETTTTE---E-EECCCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE--ECCCSS
T ss_pred             eEEEEEcCCCCe---E-EeCCCCChhhccc-cEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE--CCCCCC
Confidence            468889988652   1 1222212111112 22222  66778888765     4689999987651 0111  110001


Q ss_pred             CcceeEEEeccCCCEEEEEeCC-----CeEEEEECCCCCeeeeecc--C-ccEEEEeecCCCCCceEEEEEcCC-----C
Q 009203          374 SSAVMGVAGMQQKQIVLSAGAD-----KRIIGFDAGVGRADFKHQI--E-SKCMSVLPNPCDFNLFMVQTGTPG-----R  440 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~d-----g  440 (540)
                      ...-.+++.. ++.+++.|+.+     ..+.+||+.+.+-......  . .....+..  ++   .+++.|+.+     .
T Consensus       102 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~---~iyv~GG~~~~~~~~  175 (301)
T 2vpj_A          102 RRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG---VIYCLGGYDGLNILN  175 (301)
T ss_dssp             CCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT---EEEEECCBCSSCBCC
T ss_pred             CccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC---EEEEECCCCCCcccc
Confidence            1111122222 56777777653     3688999887654322111  1 11112222  22   466666543     4


Q ss_pred             eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCCCCccccccccccccee
Q 009203          441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYSANKPSQSIRAHQKRVF  515 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~i~  515 (540)
                      .+.+||+.+..=..  ..   .+.........+.+  ++.+++.|+.+     ..+.+||+.+.....+..+........
T Consensus       176 ~~~~~d~~~~~W~~--~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~  248 (301)
T 2vpj_A          176 SVEKYDPHTGHWTN--VT---PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG  248 (301)
T ss_dssp             CEEEEETTTTEEEE--EC---CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             eEEEEeCCCCcEEe--CC---CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccccee
Confidence            68899987654211  11   11111112223333  67777888764     468999998632233322221111112


Q ss_pred             EEEEcCCCCEEEEEEcCC-----cEEEEe
Q 009203          516 KAVWHYSHPLLISISSDL-----NIGLHK  539 (540)
Q Consensus       516 ~l~~s~~~~~l~s~~~dg-----~v~iw~  539 (540)
                      .+.+  ++++++.|+.++     .|.+||
T Consensus       249 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd  275 (301)
T 2vpj_A          249 ATVL--RGRLYAIAGYDGNSLLSSIECYD  275 (301)
T ss_dssp             EEEE--TTEEEEECCBCSSSBEEEEEEEE
T ss_pred             EEEE--CCEEEEEcCcCCCcccccEEEEc
Confidence            2223  677778877663     455665

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.84  E-value=0.14  Score=48.52  Aligned_cols=149  Identities=13%  Similarity=0.136  Sum_probs=91.3

Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-----CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee---
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-----ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI---  454 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~---  454 (540)
                      ..+|..++++- ++.||.-++..+..-.....     -..+..+..+|++   .+|+.. .+..|.|..+..+....   
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG---~lLAl~-g~~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG---DLLCLF-NDNEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS---SEEEEE-CSSEEEEEECCTTCSCCCCH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC---CEEEEe-cCCeEEEEEecCccccCccc
Confidence            34555555544 36788777764332222222     2245678889988   566665 45689998887332111   


Q ss_pred             --------eeeccccccCccccCeEEEEEcCC---CCEEEEEeCCCcEEEEeccCCCCccccccc---------ccccce
Q 009203          455 --------HAFGWKQESSESQSALINQSWSPD---GLYITSGSADPVIHLFDIRYSANKPSQSIR---------AHQKRV  514 (540)
Q Consensus       455 --------~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---------~h~~~i  514 (540)
                              ..+...........+|..+.|+|-   |..|++-..|+.|++||+.....++. .+.         .....|
T Consensus       104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev  182 (452)
T 3pbp_A          104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI  182 (452)
T ss_dssp             HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred             ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence                    111111111113568999999995   56899999999999999996433444 332         122468


Q ss_pred             eEEEEcCCCCEEEEEE--cCCcEEE
Q 009203          515 FKAVWHYSHPLLISIS--SDLNIGL  537 (540)
Q Consensus       515 ~~l~~s~~~~~l~s~~--~dg~v~i  537 (540)
                      .+++|..++-.|...+  .+|-|+-
T Consensus       183 ~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          183 TDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EEEEEcCCCcEEEEEecCCCCCEEE
Confidence            8999999886555544  7787753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.82  E-value=0.29  Score=44.83  Aligned_cols=215  Identities=11%  Similarity=0.124  Sum_probs=104.0

Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----CcEEEEecCCCCCccccceeecccCC
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-----HAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                      ..+.+||+.+..   -. .+...+.....- +++..  ++.+++.|+.+     ..+.+||..+.+-    ..+......
T Consensus        30 ~~~~~~d~~~~~---W~-~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~   98 (302)
T 2xn4_A           30 RSVECYDFKEER---WH-QVAELPSRRCRA-GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQW----TSVANMRDR   98 (302)
T ss_dssp             CCEEEEETTTTE---EE-EECCCSSCCBSC-EEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEE----EEECCCSSC
T ss_pred             CcEEEEcCcCCc---Ee-EcccCCcccccc-eEEEE--CCEEEEEeCcCCCccccceEEECCCCCce----eeCCCCCcc
Confidence            457888888652   11 122211111111 22222  66777787754     3588899887652    111111111


Q ss_pred             cceeEEEeccCCCEEEEEeCCC-----eEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcC-------C
Q 009203          375 SAVMGVAGMQQKQIVLSAGADK-----RIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTP-------G  439 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~-------d  439 (540)
                      ..-.+++. -++.+++.|+.++     .+.+||+.+.+-.......   .....+...  +   .+++.|+.       -
T Consensus        99 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~---~iyv~GG~~~~~~~~~  172 (302)
T 2xn4_A           99 RSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVG--G---LLYAVGGYDVASRQCL  172 (302)
T ss_dssp             CBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEET--T---EEEEECCEETTTTEEC
T ss_pred             ccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEEC--C---EEEEEeCCCCCCCccc
Confidence            11112222 2567777777653     5788998876543221111   111122222  2   45555543       2


Q ss_pred             CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCCCCcccccccccccce
Q 009203          440 RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYSANKPSQSIRAHQKRV  514 (540)
Q Consensus       440 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~i  514 (540)
                      ..+.+||+.+..=..  ..   .+.........+.+  ++.+++.|+.+     ..+.+||+.+.....+..+......-
T Consensus       173 ~~~~~yd~~~~~W~~--~~---~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~  245 (302)
T 2xn4_A          173 STVECYNATTNEWTY--IA---EMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA  245 (302)
T ss_dssp             CCEEEEETTTTEEEE--EC---CCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             cEEEEEeCCCCcEEE--CC---CCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence            458899987654111  11   11111112223333  67788888764     46889998863222222222111111


Q ss_pred             eEEEEcCCCCEEEEEEcCC-----cEEEEeC
Q 009203          515 FKAVWHYSHPLLISISSDL-----NIGLHKI  540 (540)
Q Consensus       515 ~~l~~s~~~~~l~s~~~dg-----~v~iw~l  540 (540)
                      ..+.+  ++++++.||.++     .|.+||+
T Consensus       246 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          246 GVCAV--NGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             EEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred             eEEEE--CCEEEEECCcCCCcccccEEEEcC
Confidence            12222  677788887664     3677663

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.77  E-value=0.32  Score=44.60  Aligned_cols=216  Identities=10%  Similarity=0.019  Sum_probs=107.5

Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC----CcEEEEecCCCCCccccceeecccCC
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD----HAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                      ...+.+||..+..   -. .+...+........+.+   ++.+++.|+.+    ..+.+||+.+.+-    ..+......
T Consensus        23 ~~~~~~~d~~~~~---W~-~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W----~~~~~~p~~   91 (306)
T 3ii7_A           23 PQSCRYFNPKDYS---WT-DIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSW----YSKLGPPTP   91 (306)
T ss_dssp             TTSEEEEETTTTE---EE-ECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEE----EEEECCSSC
T ss_pred             CceEEEecCCCCC---Ee-cCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeE----EECCCCCcc
Confidence            4678899988752   11 22221111122222232   66778888755    5688999887652    111111111


Q ss_pred             cceeEEEeccCCCEEEEEeCC------CeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcC-------
Q 009203          375 SAVMGVAGMQQKQIVLSAGAD------KRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTP-------  438 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~-------  438 (540)
                      ..-.+++. -++.+++.|+.+      ..+.+||+.+.+-.......   .....+..  .+   .+++.|+.       
T Consensus        92 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~---~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           92 RDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG---LIYVCGGSLGNNVSG  165 (306)
T ss_dssp             CBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT---EEEEECCEESCTTTC
T ss_pred             ccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC---EEEEECCCCCCCCcc
Confidence            11112222 256777777765      45899999876543221111   11112222  12   45555543       


Q ss_pred             --CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCCCCcccccccccc
Q 009203          439 --GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYSANKPSQSIRAHQ  511 (540)
Q Consensus       439 --dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~h~  511 (540)
                        -..+.+||..+..=.  .+.   .+.........+.+  ++++++.|+.+     ..+.+||+.+.....+..+....
T Consensus       166 ~~~~~~~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  238 (306)
T 3ii7_A          166 RVLNSCEVYDPATETWT--ELC---PMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG  238 (306)
T ss_dssp             EECCCEEEEETTTTEEE--EEC---CCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred             cccceEEEeCCCCCeEE--ECC---CccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence              345889998875411  111   11111112223333  67777777654     46889998863333333333222


Q ss_pred             cceeEEEEcCCCCEEEEEEcC-----CcEEEEeC
Q 009203          512 KRVFKAVWHYSHPLLISISSD-----LNIGLHKI  540 (540)
Q Consensus       512 ~~i~~l~~s~~~~~l~s~~~d-----g~v~iw~l  540 (540)
                      .....+.+  ++.+++.||.+     ..+.+||+
T Consensus       239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred             cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence            22233333  67788888755     34666653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.74  E-value=0.98  Score=49.76  Aligned_cols=280  Identities=9%  Similarity=-0.038  Sum_probs=144.2

Q ss_pred             EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCc----ceeecccccCCCCCCCCceeEEEecC----CCeEEEEeecCCC
Q 009203          227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSG----ASLLSTTDCLSPKHRRWPEDIAWHPQ----GNSLFSAHTADSG  298 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~----~~~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~s~~~~~~~  298 (540)
                      +|+++-.  +.+|+.|+..|.=.+|.+......    ..+....     ..-++|.+++....    ...|++++- .+.
T Consensus       330 ssl~~l~--~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-----~N~~PI~D~~v~d~~~~~~~~i~~~sG-~g~  401 (1158)
T 3ei3_A          330 ECLTYLD--NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-----TNLGPIVDMCVVDLERQGQGQLVTCSG-AFK  401 (1158)
T ss_dssp             SEEEECS--TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-----CCCCSEEEEEEECTTSSSCCEEEEEEC-CGG
T ss_pred             cEEEEEC--CCEEEEEEecCCcEEEEEecCCCCccceEEeEeee-----cCcCCceeEEEEccCCCCCCeEEEEEC-cCC
Confidence            4555553  447889998888888887654321    1111221     33467888877542    235665522 256


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC--CCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP--WENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +|.++++.-.-+  ......++- ++ -..++.+....  ....+|+.+..+.+ .|+.+....    ...+...+....
T Consensus       402 ~gsL~~lr~Gi~--~~~~~~~~l-~g-v~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~----veev~~~gf~~~  472 (1158)
T 3ei3_A          402 EGSLRIIRNGIG--IHEHASIDL-PG-IKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEE----VEETELMGFVDD  472 (1158)
T ss_dssp             GCEEEEEEESBC--EEEEEEECC-CS-CCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTE----EEEECCTTCCSS
T ss_pred             CCeEEEEecCCC--EEEEEeecC-CC-ccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCc----ccccccccccCC
Confidence            788988765433  222333322 22 23466665431  13457777666555 566553221    111111111111


Q ss_pred             eeEEEecc-CCCEEEEEeCCCeEEEEECCCCCeeeeecc--CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          377 VMGVAGMQ-QKQIVLSAGADKRIIGFDAGVGRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       377 v~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      ...++... .+..++=.+. ..|++.+...+..+.....  +..+...+.+..     .++.++ ++.+.++++..++..
T Consensus       473 ~~TL~~~~l~~~~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~-----~vvva~-g~~l~~fel~~~~L~  545 (1158)
T 3ei3_A          473 QQTFFCGNVAHQQLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCNSS-----QVVVAV-GRALYYLQIHPQELR  545 (1158)
T ss_dssp             SCEEEEEEETTTEEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEECSS-----EEEEEE-TTEEEEEEEETTEEE
T ss_pred             CCcEEEEEcCCCeEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeCCC-----EEEEEE-CCEEEEEEeeCCcee
Confidence            11111110 1223333333 2477777765444433332  234455554432     344444 578888887754321


Q ss_pred             eeeeccccccCccccCeEEEEEcCC------CCEEEEEeC-CCcEEEEeccCCCCcccccccc-cccceeEEEEc--CCC
Q 009203          454 IHAFGWKQESSESQSALINQSWSPD------GLYITSGSA-DPVIHLFDIRYSANKPSQSIRA-HQKRVFKAVWH--YSH  523 (540)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~~~~sp~------g~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~-h~~~i~~l~~s--~~~  523 (540)
                      .  .. .   ..-...|.|+++.|.      +.+++.|.. |++|+|+++..  .+.+....- ......++.+.  ...
T Consensus       546 ~--~~-~---~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~--l~~~~~~~L~~~~~p~si~l~~~~~~  617 (1158)
T 3ei3_A          546 Q--IS-H---TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS--FELLHKEMLGGEIIPRSILMTTFESS  617 (1158)
T ss_dssp             E--EE-E---EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT--CCEEEEEECCSSCCEEEEEEEEETTE
T ss_pred             e--ec-c---cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC--CCeEEEEECCCCCCCcEEEEEEeCCC
Confidence            1  11 0   112457999999863      478999997 99999999986  443322111 11223344332  233


Q ss_pred             CEEEEEEcCCcEEEE
Q 009203          524 PLLISISSDLNIGLH  538 (540)
Q Consensus       524 ~~l~s~~~dg~v~iw  538 (540)
                      .+|..|-.||.+.-+
T Consensus       618 ~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          618 HYLLCALGDGALFYF  632 (1158)
T ss_dssp             EEEEEEETTSEEEEE
T ss_pred             cEEEEEeCCCeEEEE
Confidence            578888889887544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.71  E-value=0.32  Score=45.84  Aligned_cols=225  Identities=12%  Similarity=0.070  Sum_probs=104.2

Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC-CcccceeEEEEeCCCCCEEEEEec-C---------CcEEE
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP-HVKGIINSIIFLPWENPCFATGGS-D---------HAVVL  353 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~-d---------g~i~i  353 (540)
                      ++.+++.|   |.....+.+||+.+... . -..+...+ .......++.+   ++.+++.|+. +         ..+.+
T Consensus        19 ~~~iyv~G---G~~~~~~~~~d~~~~~~-~-W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~   90 (357)
T 2uvk_A           19 NDTVYIGL---GSAGTAWYKLDTQAKDK-K-WTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHK   90 (357)
T ss_dssp             TTEEEEEC---GGGTTCEEEEETTSSSC-C-EEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEE
T ss_pred             CCEEEEEe---CcCCCeEEEEccccCCC-C-eeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEE
Confidence            55555555   12345788899874211 1 12222211 11111222222   5677777776 2         46889


Q ss_pred             EecCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCC-------------------------------------
Q 009203          354 WSERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGAD-------------------------------------  395 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d-------------------------------------  395 (540)
                      ||+.+.+-    ..+.... ....-.+++. .++.+++.|+.+                                     
T Consensus        91 yd~~~~~W----~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (357)
T 2uvk_A           91 YNPKTNSW----VKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYF  165 (357)
T ss_dssp             EETTTTEE----EECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGC
T ss_pred             EeCCCCcE----EECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccC
Confidence            99987652    1111111 1111111222 467888888754                                     


Q ss_pred             --CeEEEEECCCCCeeeeeccC--ccE-EEEeecCCCCCceEEEEEcC------CCeEEEEECCCCcceeeeeccccccC
Q 009203          396 --KRIIGFDAGVGRADFKHQIE--SKC-MSVLPNPCDFNLFMVQTGTP------GRQLRLYDIRLRQTEIHAFGWKQESS  464 (540)
Q Consensus       396 --g~i~iwd~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~  464 (540)
                        ..+.+||+.+.+-.......  ... .+++... +   .+++.|+.      ...+.+||+...........   .+.
T Consensus       166 ~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~-~---~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~---~~~  238 (357)
T 2uvk_A          166 FNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKG-D---KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA---PVS  238 (357)
T ss_dssp             CCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEET-T---EEEEECCEEETTEECCCEEEEECC---CEEEECC---CSS
T ss_pred             CcccEEEEeCCCCcEEECCCCCCCCcccccEEEEC-C---EEEEEeeecCCCcccCceEEEEecCCCCcEEecC---CCC
Confidence              57899999876543322111  111 2222222 1   45555543      34577788732222222111   111


Q ss_pred             ccc--cCeEEEEEcCCCCEEEEEeCC----------------------CcEEEEeccCCCCcccccccccccceeEEEEc
Q 009203          465 ESQ--SALINQSWSPDGLYITSGSAD----------------------PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH  520 (540)
Q Consensus       465 ~~~--~~v~~~~~sp~g~~l~sg~~d----------------------g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s  520 (540)
                      ...  .....+.+  ++.+++.|+.+                      ..+.+||+.+.....+..+......-.++.  
T Consensus       239 ~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--  314 (357)
T 2uvk_A          239 SPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--  314 (357)
T ss_dssp             TTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--
T ss_pred             CCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--
Confidence            111  11122333  67777777632                      257889988643444433332222212222  


Q ss_pred             CCCCEEEEEEcCC
Q 009203          521 YSHPLLISISSDL  533 (540)
Q Consensus       521 ~~~~~l~s~~~dg  533 (540)
                      .++++++.||.++
T Consensus       315 ~~~~i~v~GG~~~  327 (357)
T 2uvk_A          315 WNNSLLIIGGETA  327 (357)
T ss_dssp             ETTEEEEEEEECG
T ss_pred             eCCEEEEEeeeCC
Confidence            3778888888654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.54  E-value=0.46  Score=43.50  Aligned_cols=228  Identities=11%  Similarity=0.057  Sum_probs=112.2

Q ss_pred             CcEEEEEeCC--ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC----CeEEEEecCC
Q 009203          236 EQLFVTSALD--GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD----SQISVLNLNK  309 (540)
Q Consensus       236 ~~~l~tg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d----~~i~vwd~~~  309 (540)
                      +.+++.|+.+  ..+.+||..+.+.  ........   . ... .+++. -++.+++.|    +.+    ..+.+||..+
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W--~~~~~~p~---~-r~~-~~~~~-~~~~lyv~G----G~~~~~~~~~~~~d~~~   79 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSW--TDIRCPFE---K-RRD-AACVF-WDNVVYILG----GSQLFPIKRMDCYNVVK   79 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEE--EECCCCSC---C-CBS-CEEEE-ETTEEEEEC----CBSSSBCCEEEEEETTT
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCE--ecCCCCCc---c-cce-eEEEE-ECCEEEEEe----CCCCCCcceEEEEeCCC
Confidence            4566666653  5688888877542  22111111   1 111 12222 355566665    433    6788899887


Q ss_pred             CCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC------CcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          310 TKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      ..- ..+..+   +........+.+   ++.+++.|+.+      ..+.+||..+..-    ..+........-.+++. 
T Consensus        80 ~~W-~~~~~~---p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~-  147 (306)
T 3ii7_A           80 DSW-YSKLGP---PTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESW----HTKPSMLTQRCSHGMVE-  147 (306)
T ss_dssp             TEE-EEEECC---SSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEE----EEECCCSSCCBSCEEEE-
T ss_pred             CeE-EECCCC---CccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCce----EeCCCCcCCcceeEEEE-
Confidence            521 111111   111121222223   66777888765      4588999987652    11111001111112222 


Q ss_pred             cCCCEEEEEeC---------CCeEEEEECCCCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCC-----CeEEEEE
Q 009203          384 QQKQIVLSAGA---------DKRIIGFDAGVGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPG-----RQLRLYD  446 (540)
Q Consensus       384 ~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d-----g~v~i~d  446 (540)
                      -++.+++.|+.         -..+.+||+.+.+-.......   .....+..  .+   .+++.|+.+     ..+.+||
T Consensus       148 ~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~---~i~v~GG~~~~~~~~~~~~yd  222 (306)
T 3ii7_A          148 ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KD---KIFAVGGQNGLGGLDNVEYYD  222 (306)
T ss_dssp             ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT---EEEEECCEETTEEBCCEEEEE
T ss_pred             ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CC---EEEEEeCCCCCCCCceEEEee
Confidence            25667676653         345889999876543221111   11112222  22   466666543     4688999


Q ss_pred             CCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCC
Q 009203          447 IRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYS  499 (540)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~  499 (540)
                      +.+..=  ..+.   .+.........+.+  ++.+++.|+.+     ..+.+||+.+.
T Consensus       223 ~~~~~W--~~~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          223 IKLNEW--KMVS---PMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             TTTTEE--EECC---CCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCCcE--EECC---CCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            886541  1111   11112222333444  67788888754     46888888863

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.47  E-value=0.52  Score=43.25  Aligned_cols=228  Identities=8%  Similarity=-0.006  Sum_probs=109.4

Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec----C-----CcEEEEe
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS----D-----HAVVLWS  355 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----d-----g~i~iwd  355 (540)
                      ++.+++.|...+..-..+.+||..+..   .. .+...+...... +++..  ++.+++.|+.    +     ..+.+||
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~---W~-~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGT---WL-RLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTE---EE-ECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCe---Ee-ECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEEC
Confidence            455666651111123468889988652   11 122211111111 22222  5677777775    2     4588899


Q ss_pred             cCCCCCccccceeeccc-CCcceeEEEeccCCCEEEEEeCC-----CeEEEEECCCCCeeeeeccC---ccEEEEeecCC
Q 009203          356 ERDAEDSWKPKALHRNL-HSSAVMGVAGMQQKQIVLSAGAD-----KRIIGFDAGVGRADFKHQIE---SKCMSVLPNPC  426 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~  426 (540)
                      +.+.+-    ..+.... .......+.+  ++.+++.|+.+     ..+.+||+.+.+-.......   .....+..  .
T Consensus        97 ~~~~~W----~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~  168 (308)
T 1zgk_A           97 PMTNQW----SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--N  168 (308)
T ss_dssp             TTTTEE----EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T
T ss_pred             CCCCeE----eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--C
Confidence            887652    1111100 1111122222  56777776643     35889999876543221111   11122222  2


Q ss_pred             CCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEec
Q 009203          427 DFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDI  496 (540)
Q Consensus       427 ~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~  496 (540)
                      +   .+++.|+.+     ..+.+||+.+..=.  ...   .+.........+.+  ++.+++.|+.+     ..+.+||+
T Consensus       169 ~---~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          169 R---LLYAVGGFDGTNRLNSAECYYPERNEWR--MIT---AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             T---EEEEECCBCSSCBCCCEEEEETTTTEEE--ECC---CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred             C---EEEEEeCCCCCCcCceEEEEeCCCCeEe--eCC---CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeC
Confidence            2   466666543     45889998765411  111   11111122233333  67778888764     56899998


Q ss_pred             cCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC-----cEEEEe
Q 009203          497 RYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL-----NIGLHK  539 (540)
Q Consensus       497 ~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg-----~v~iw~  539 (540)
                      .+.....+..+.........+.+  ++++++.||.++     .|.+||
T Consensus       239 ~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd  284 (308)
T 1zgk_A          239 ETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYD  284 (308)
T ss_dssp             TTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEE
T ss_pred             CCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEc
Confidence            86332333322221111122222  667778877553     455665

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.43  E-value=0.67  Score=44.12  Aligned_cols=235  Identities=11%  Similarity=0.040  Sum_probs=140.1

Q ss_pred             EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203          228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL  307 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~  307 (540)
                      +.-.+| ..+.||.-. ..++.|+|+++...+....-         ...|.-=.|-.+ +.|+..     .+..|+.|++
T Consensus        70 sAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~---------~e~VvfWkWis~-~~l~lV-----T~taVyHWsi  132 (494)
T 1bpo_A           70 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---------TDDVTFWKWISL-NTVALV-----TDNAVYHWSM  132 (494)
T ss_dssp             EEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEEC---------SSCCCEEEEEET-TEEEEE-----CSSEEEEEES
T ss_pred             eeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceec---------CCCceEEEecCC-CeEEEE-----cCCeeEEecc
Confidence            445678 477777765 57899999998766555432         234666677654 355554     4788999999


Q ss_pred             CCCCCceeEEeecCCCC-cccceeEEEEeCCCCCEEEEEe-------cCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          308 NKTKGRACVTFLDDKPH-VKGIINSIIFLPWENPCFATGG-------SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      ...  ......++.++. ....|.....++ +.++++..+       -.|.+.+|..+.+.    .+.+  ++|......
T Consensus       133 ~~~--s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~~----sQ~i--eGhaa~F~~  203 (494)
T 1bpo_A          133 EGE--SQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPI--EGHAASFAQ  203 (494)
T ss_dssp             SSS--CCCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTCC----EEEE--CCSEEEEEE
T ss_pred             cCC--CCchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeeccccc----cchh--eeeeeeeEE
Confidence            753  345555554332 134577778888 888876543       24778999998875    2444  557655554


Q ss_pred             EEeccC---CCEEEEEeC---CCeEEEEECCCC---Ceeee-------ec---cCccEEEEeecCCCCCceEEEEEcCCC
Q 009203          380 VAGMQQ---KQIVLSAGA---DKRIIGFDAGVG---RADFK-------HQ---IESKCMSVLPNPCDFNLFMVQTGTPGR  440 (540)
Q Consensus       380 l~~s~~---~~~l~~~~~---dg~i~iwd~~~~---~~~~~-------~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg  440 (540)
                      +...-+   ..+++.+..   .+.+++.++...   ...+.       +.   ......++..++..   ..+..-+.-|
T Consensus       204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky---gviyviTK~G  280 (494)
T 1bpo_A          204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH---DVVFLITKYG  280 (494)
T ss_dssp             EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT---TEEEEEETTS
T ss_pred             EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC---CEEEEEecCc
Confidence            444211   123444443   278999998543   11110       00   12334455555443   3566667889


Q ss_pred             eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .|.+||+.++.+.....       -....|...+.+....-++.....|.|.--.++.
T Consensus       281 ~i~lyDleTgt~i~~nr-------Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          281 YIHLYDLETGTCIYMNR-------ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEEEEETTTCCEEEEEE-------CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             eEEEEecccceeeeeec-------ccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            99999999998755321       1123444444444444444455777777666664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.42  E-value=0.54  Score=42.92  Aligned_cols=186  Identities=12%  Similarity=0.162  Sum_probs=92.5

Q ss_pred             CCCeEEEEeecCCCC-----CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-----cEEEE
Q 009203          285 QGNSLFSAHTADSGD-----SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-----AVVLW  354 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-----~i~iw  354 (540)
                      ++.+++.|    +.+     ..+.+||..+..   - ..+...+........+.+   ++.+++.|+.++     .+.+|
T Consensus        61 ~~~lyv~G----G~~~~~~~~~~~~~d~~~~~---W-~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~  129 (302)
T 2xn4_A           61 AGLVFAVG----GFNGSLRVRTVDSYDPVKDQ---W-TSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAY  129 (302)
T ss_dssp             TTEEEEES----CBCSSSBCCCEEEEETTTTE---E-EEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEE
T ss_pred             CCEEEEEe----CcCCCccccceEEECCCCCc---e-eeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEE
Confidence            55566665    433     458889988652   1 112221211122222222   667788887653     47888


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-------CeEEEEECCCCCeeeeecc--C-ccEEEEeec
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-------KRIIGFDAGVGRADFKHQI--E-SKCMSVLPN  424 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~  424 (540)
                      |+.+.+-    ..+........-.+++.. ++.+++.|+.+       ..+.+||+.+++-......  . .....+...
T Consensus       130 d~~~~~W----~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~  204 (302)
T 2xn4_A          130 NIKSNEW----FHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLN  204 (302)
T ss_dssp             ETTTTEE----EEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred             eCCCCeE----eecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEEC
Confidence            9887652    111111111111122222 56777776542       3588999987654322111  1 111222222


Q ss_pred             CCCCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEE
Q 009203          425 PCDFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-----VIHLF  494 (540)
Q Consensus       425 ~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-----~i~iw  494 (540)
                        +   .+++.|+.+     ..+.+||+.+..=.  .+.   ...........+.+  ++.+++.|+.++     .+.+|
T Consensus       205 --~---~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~~---~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y  272 (302)
T 2xn4_A          205 --N---LLYAVGGHDGPLVRKSVEVYDPTTNAWR--QVA---DMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYY  272 (302)
T ss_dssp             --T---EEEEECCBSSSSBCCCEEEEETTTTEEE--EEC---CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred             --C---EEEEECCCCCCcccceEEEEeCCCCCEe--eCC---CCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEE
Confidence              2   566666553     46889999865411  111   11111111222333  677888887653     48899


Q ss_pred             eccC
Q 009203          495 DIRY  498 (540)
Q Consensus       495 d~~~  498 (540)
                      |+.+
T Consensus       273 d~~~  276 (302)
T 2xn4_A          273 NPTT  276 (302)
T ss_dssp             ETTT
T ss_pred             cCCC
Confidence            9886

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.28  E-value=0.09  Score=45.01  Aligned_cols=154  Identities=6%  Similarity=0.004  Sum_probs=83.1

Q ss_pred             ceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCC-ccc--cceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECC
Q 009203          328 IINSIIFLPWENPCFATGGSDHAVVLWSERDAED-SWK--PKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAG  404 (540)
Q Consensus       328 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~--~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~  404 (540)
                      .+..++|+| ++.+.+.  .+|.++-.+..+... .|.  ...+-..+... -.++.|.|+|.+.++  .||.|+-++.-
T Consensus        42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            477999999 9987777  678777766654321 000  01111011111 478899999988887  56999888864


Q ss_pred             CCCeee-------eec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc-cCccccCeEEEEE
Q 009203          405 VGRADF-------KHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE-SSESQSALINQSW  475 (540)
Q Consensus       405 ~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~  475 (540)
                      +...-.       ... .=.....+.+.|++    .|.+.. |+.++-....+...... +..... ....-....-+.|
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G----~Lyav~-dg~lyr~~~P~~~~~~w-l~~~~~~g~~g~~~yr~l~f  189 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNG----YLYAVH-GQQFYKALPPVSNQDNW-LARATKIGQGGWDTFKFLFF  189 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTS----CEEEEE-TTEEEEECCCSSTTCCH-HHHCEEEESSSGGGEEEEEE
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCc----eEEEEe-CCcEEecCCCCCCCccc-ccccceeccCCcceEEEEEE
Confidence            322111       011 11356788899988    344444 77754433322111000 000000 0122223455779


Q ss_pred             cCCCCEEEEEeCCCcEEEEecc
Q 009203          476 SPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       476 sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      +++|.+.++.  +|.  +|...
T Consensus       190 ~~~G~l~~v~--~g~--~Y~~~  207 (236)
T 1tl2_A          190 SSVGTLFGVQ--GGK--FYEDY  207 (236)
T ss_dssp             CTTSCEEEEE--TTE--EEEES
T ss_pred             CCCCcEEEEe--CCe--EEecC
Confidence            9999877766  664  44444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.07  E-value=0.85  Score=41.78  Aligned_cols=175  Identities=15%  Similarity=0.128  Sum_probs=86.0

Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-----CcEEEEecCCCCCccccceeecccCC
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-----HAVVLWSERDAEDSWKPKALHRNLHS  374 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~  374 (540)
                      ..+.+||+.+..   . ..+...+........+.+   ++.+++.|+.+     ..+.+||+.+.+-    ..+......
T Consensus        90 ~~~~~~d~~~~~---W-~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~  158 (308)
T 1zgk_A           90 SALDCYNPMTNQ---W-SPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTR  158 (308)
T ss_dssp             CCEEEEETTTTE---E-EECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSC
T ss_pred             ceEEEECCCCCe---E-eECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCcc
Confidence            468889988652   1 112211111122222333   66777777643     3588899887652    111110011


Q ss_pred             cceeEEEeccCCCEEEEEeCC-----CeEEEEECCCCCeeeeecc--C-ccEEEEeecCCCCCceEEEEEcCC-----Ce
Q 009203          375 SAVMGVAGMQQKQIVLSAGAD-----KRIIGFDAGVGRADFKHQI--E-SKCMSVLPNPCDFNLFMVQTGTPG-----RQ  441 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~d-----g~  441 (540)
                      ..-.+++.. ++.+++.|+.+     ..+.+||+.+.+-......  . .....+..  .+   .+++.|+.+     ..
T Consensus       159 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~---~iyv~GG~~~~~~~~~  232 (308)
T 1zgk_A          159 RIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HN---CIYAAGGYDGQDQLNS  232 (308)
T ss_dssp             CBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT---EEEEECCBCSSSBCCC
T ss_pred             ccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CC---EEEEEeCCCCCCccce
Confidence            111122222 56777777654     4588999987653322111  1 11122222  22   466666554     56


Q ss_pred             EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccC
Q 009203          442 LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRY  498 (540)
Q Consensus       442 v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~  498 (540)
                      +.+||+.+..=.  .+.   .+.........+.+  ++++++.|+.+     ..+.+||+.+
T Consensus       233 v~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          233 VERYDVETETWT--FVA---PMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             EEEEETTTTEEE--ECC---CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             EEEEeCCCCcEE--ECC---CCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCC
Confidence            899999865411  111   11111112223333  67778888754     3577888875

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.86  E-value=1.1  Score=41.23  Aligned_cols=208  Identities=12%  Similarity=0.109  Sum_probs=100.0

Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec----C-------CcEEEEecCCCCCcccccee
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS----D-------HAVVLWSERDAEDSWKPKAL  368 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----d-------g~i~iwd~~~~~~~~~~~~~  368 (540)
                      ..+.+||..+.+  .....+..   ............ ++.+++.|+.    +       ..+.+||..+.+-    ..+
T Consensus        13 ~~~~~yd~~~~~--W~~~~~~~---p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W----~~~   82 (315)
T 4asc_A           13 EGAVAYDPAANE--CYCASLSS---QVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW----LGM   82 (315)
T ss_dssp             TEEEEEETTTTE--EEEEECCC---CSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE----EEC
T ss_pred             CceEEECCCCCe--EecCCCCC---CCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeE----EEC
Confidence            679999998762  22222221   111122222334 7788888874    1       1277888887652    111


Q ss_pred             ecccCCcceeEEEeccCCCEEEEEeCC--------CeEEEEECCCCCeeeeecc--C-ccEEEEeecCCCCCceEEEEEc
Q 009203          369 HRNLHSSAVMGVAGMQQKQIVLSAGAD--------KRIIGFDAGVGRADFKHQI--E-SKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       369 ~~~~~~~~v~~l~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                      ........-.+++.. ++.+++.|+.+        ..+.+||+.+++-......  . .....+...  +   .+++.|+
T Consensus        83 ~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~--~---~iyv~GG  156 (315)
T 4asc_A           83 PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHM--D---LVYVIGG  156 (315)
T ss_dssp             CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET--T---EEEEECC
T ss_pred             CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEEC--C---EEEEEeC
Confidence            110011111122222 56677777632        3588999987653222111  1 111122222  1   4566665


Q ss_pred             C-C-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEeccCCCCccccc
Q 009203          438 P-G-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-----VIHLFDIRYSANKPSQS  506 (540)
Q Consensus       438 ~-d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-----~i~iwd~~~~~~~~~~~  506 (540)
                      . +     ..+.+||..+..=  ....   .+.........+.+  ++++++.|+.++     .+.+||+.+.....+..
T Consensus       157 ~~~~~~~~~~~~~yd~~~~~W--~~~~---~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  229 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKKFEW--KELA---PMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA  229 (315)
T ss_dssp             BCTTSCBCCCEEEEETTTTEE--EECC---CCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred             CCCCCcccceEEEEeCCCCeE--EECC---CCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence            4 2     4689999886541  1110   11111112223333  677888887654     47888888632233332


Q ss_pred             ccccccceeEEEEcCCCCEEEEEEcC
Q 009203          507 IRAHQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       507 ~~~h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                      +.........+.+  ++++++.||.+
T Consensus       230 ~p~~r~~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          230 FPQERSSLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             CCCcccceeEEEE--CCEEEEECCcc
Confidence            2211111222233  66777888764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.74  E-value=2.5  Score=44.45  Aligned_cols=272  Identities=11%  Similarity=0.061  Sum_probs=143.5

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      ...|.++....+ + .|..|+.+| +..||..+...    ....    ......|.++.. .+| .|..+    +.+ -|
T Consensus        62 ~~~i~~i~~d~~-g-~lWigT~~G-l~~yd~~~~~f----~~~~----~~~~~~i~~i~~-~~g-~lWig----t~~-Gl  123 (758)
T 3ott_A           62 NTRIYCGVIIDN-T-YLYMGTDNG-ILVYNYRADRY----EQPE----TDFPTDVRTMAL-QGD-TLWLG----ALN-GL  123 (758)
T ss_dssp             SSCEEEEEEETT-T-EEEEEETTE-EEEEETTTTEE----CCCS----CCCCSCEEEEEE-ETT-EEEEE----ETT-EE
T ss_pred             CceEEEEEEcCC-C-cEEEEeCCC-eEEEeCCCCEE----ECcc----cCCCceEEEEEe-cCC-cEEEE----cCC-cc
Confidence            356899888763 5 455666665 77899876432    1110    111234666654 355 45554    444 57


Q ss_pred             EEEecCCCCCceeEEeecC--CCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc----CCcc
Q 009203          303 SVLNLNKTKGRACVTFLDD--KPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL----HSSA  376 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~  376 (540)
                      ..+|..++.    +..+..  .......|.++.... ++.+.+ |+.+ -|..|+..++..    ..+....    ....
T Consensus       124 ~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~----~~~~~~~~~~~~~~~  192 (758)
T 3ott_A          124 YTYQLQSRK----LTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKF----EGIPLPVHSSQSNLF  192 (758)
T ss_dssp             EEEETTTCC----EEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEE----EEECCCCCTTCSSCC
T ss_pred             eeEeCCCCe----EEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCce----EEecCCCccccccce
Confidence            888887542    222210  001124588888776 665554 5544 477888776542    1111110    1234


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      |.++...+++..|..|+. +-+..+|..+++...... ....+.++..+..+    .|..|+. +.+.+++..+......
T Consensus       193 i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g----~lWigT~-~Gl~~~~~~~~~~~~~  266 (758)
T 3ott_A          193 VNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG----DLLAGTD-NGLYVYHNDTTPLQHI  266 (758)
T ss_dssp             EEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTC----CEEEEET-TEEEEECCTTSCCEEE
T ss_pred             eEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC----CEEEEeC-CceeEEecCCCcEEEE
Confidence            888888777776666664 468889987765432211 12345666666655    3444443 4688888776542211


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccc--ccc--ccccceeEEEEcCCCCEEEEEEc
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ--SIR--AHQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~--~~~--~h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      .........-....|.++..+.+|.+-+ |+..| +.++..... .....  ...  .....|.++.-..+|.+.+.. .
T Consensus       267 ~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt-~  342 (758)
T 3ott_A          267 IHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNSA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG-A  342 (758)
T ss_dssp             CCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE-T
T ss_pred             EcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCCc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEee-C
Confidence            1000000011234689999888876544 44556 555433210 11110  000  112468888888888766543 4


Q ss_pred             CC
Q 009203          532 DL  533 (540)
Q Consensus       532 dg  533 (540)
                      +|
T Consensus       343 ~G  344 (758)
T 3ott_A          343 NG  344 (758)
T ss_dssp             TE
T ss_pred             Cc
Confidence            55

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.70  E-value=1.2  Score=40.65  Aligned_cols=176  Identities=7%  Similarity=0.060  Sum_probs=94.8

Q ss_pred             EecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-------------
Q 009203          282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-------------  348 (540)
Q Consensus       282 ~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-------------  348 (540)
                      |+.+|..|+....  ..++.|...+.+.. ....+..        ..  +--+++ ++.+|+.+...             
T Consensus        21 ~~~~g~~iy~~n~--~d~~~ly~~~~dg~-~~~~l~~--------~~--~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n   86 (302)
T 3s25_A           21 FCESDGEVFFSNT--NDNGRLYAMNIDGS-NIHKLSN--------DT--AMYINA-DKNYVYYVRNNNQKITSQTFFSYD   86 (302)
T ss_dssp             EEEETTEEEEEEG--GGTTEEEEEETTSC-SCEEEEE--------EE--EEEEEE-CSSEEEEEEECC------CCSSCC
T ss_pred             EEEeCCEEEEEeC--CCCceEEEEcCCCC-CCEEccC--------Cc--eeeEEE-cCCEEEEEECCCCcccccceeccC
Confidence            4567777777621  23566777776532 2222221        11  234567 77787766543             


Q ss_pred             -CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe----CCCeEEEEECCCCCeeeeeccCccEEEEee
Q 009203          349 -HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG----ADKRIIGFDAGVGRADFKHQIESKCMSVLP  423 (540)
Q Consensus       349 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  423 (540)
                       ..|+..++...+.    ..+.    ..  .+..|+++++.|+...    .+..|+..++.............    ..+
T Consensus        87 ~~~Iy~i~~dg~~~----~~l~----~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~  152 (302)
T 3s25_A           87 RNSLCRIKRNGHGS----TVLD----PD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTC  152 (302)
T ss_dssp             SEEEEEEETTSCCC----EEEE----CS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCS
T ss_pred             CCeEEEEeCCCCcc----eEee----cC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEe
Confidence             3577778777652    2222    11  1236777888888776    34467777776443322222222    234


Q ss_pred             cCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC--CcEEEEeccC
Q 009203          424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD--PVIHLFDIRY  498 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d--g~i~iwd~~~  498 (540)
                      ++.+.  .+..+......|.+.++........ +      .   +.. ...++|++.+|+-...+  ..|..-+++.
T Consensus       153 ~~~g~--~iy~t~~g~~~Iy~~~l~g~~~~~l-~------~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG  216 (302)
T 3s25_A          153 NTSDR--YFYYNNPKNGQLYRYDTASQSEALF-Y------D---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINN  216 (302)
T ss_dssp             EEETT--EEEEECTTTCCEEEEETTTTEEEEE-E------C---SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred             eEECC--EEEEEeCCCceEEEEECCCCCEEEE-e------C---CCc-cceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence            44442  2344444467888888876553221 1      1   112 23456999888866543  3566666664

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.60  E-value=2.8  Score=44.08  Aligned_cols=284  Identities=8%  Similarity=-0.009  Sum_probs=141.9

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC--cceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS--GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      ..|.++.-..+ |.+. .|+.+| +..++..++..  ...+... .....-....|.++.-..+|.+-+ |    + ++-
T Consensus       324 ~~v~~i~~D~~-g~lW-iGt~~G-l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~v~~i~~d~~g~lWi-g----t-~~G  393 (758)
T 3ott_A          324 NQFYSLFRDSK-GFYW-FGGANG-LIRFTDPAGERHDAIWYRMG-DKTYPLSHNRIRHIYEDKEQQLWI-A----T-DGS  393 (758)
T ss_dssp             CBEEEEEECTT-CCEE-EEETTE-EEEESCTTSSCCCCEEECTT-CSSSCCSCSCEEEEEECTTSCEEE-E----E-TTE
T ss_pred             ceEEEEEEcCC-CCEE-EeeCCc-ceeecccccccceeEEeccC-CcCCCCCCCceEEEEECCCCCEEE-E----e-CCc
Confidence            46888888774 5544 445555 55565544321  1111100 000011224578887777776444 4    4 356


Q ss_pred             EEEEecCCCCCceeEEeecCCC-CcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCC-----CCccccceee-cc-cC
Q 009203          302 ISVLNLNKTKGRACVTFLDDKP-HVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDA-----EDSWKPKALH-RN-LH  373 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~-~~-~~  373 (540)
                      |..||..++.. .......... .....|.++...+ ++ .|..|+..+-|.++|..+.     .......... .. ..
T Consensus       394 L~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~i~~d~-~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  470 (758)
T 3ott_A          394 INRYDYATRQF-IHYNIVDNTGTYNTNWTYYIFEDT-AG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLS  470 (758)
T ss_dssp             EEEEETTTTEE-EEEEEECCC--CBSSSEEEEEECT-TS-EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCS
T ss_pred             HhhcCcCCCcE-EEeecCCCcCCCCCceEEEEEEcC-CC-CEEEEECCCceEEEccccccccCCcceecccccccccccc
Confidence            88899876521 1111111100 0124578887765 55 4556776666888886531     1000000000 01 12


Q ss_pred             CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec----cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCC
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ----IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL  449 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~  449 (540)
                      ...|.++...++|.+.+.++..+-|..+|..+++......    ....+.++..+..+    .|..|+. +.+..||..+
T Consensus       471 ~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g----~lWigt~-~Gl~~~~~~~  545 (758)
T 3ott_A          471 GMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG----LLWVGFH-GGVMRINPKD  545 (758)
T ss_dssp             CSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS----CEEEEET-TEEEEECC--
T ss_pred             cceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC----CEEEEec-CceEEEecCC
Confidence            3458899988888877644444558889998765433211    12345667666655    2333444 4588888765


Q ss_pred             CcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEc-CCCCEEEE
Q 009203          450 RQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH-YSHPLLIS  528 (540)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s-~~~~~l~s  528 (540)
                      ......  .. ..+.  ...|.++... +|. |..++.+| |..||..+.  . +..+......+....+. ++| .|..
T Consensus       546 ~~~~~~--~~-~gl~--~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~G-~l~f  613 (758)
T 3ott_A          546 ESQQSI--SF-GSFS--NNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTM--D-ARQQNMTNKRFTSLLFDPKED-CVYL  613 (758)
T ss_dssp             CCCCBC--CC-CC-----CCEEEEEEE-TTE-EEEEESSC-EEEEETTTC--C-EEEC--CCCCCSEEEEETTTT-EEEE
T ss_pred             CceEEe--cc-cCCC--ccceEEEEEC-CCC-EEEECCCC-eEEEcCCCc--e-eEEecCCCCceeeeEEECCCC-cEEE
Confidence            542211  00 0111  2457777764 554 55555666 778888752  2 22211112233344444 455 4666


Q ss_pred             EEcCCcEEE
Q 009203          529 ISSDLNIGL  537 (540)
Q Consensus       529 ~~~dg~v~i  537 (540)
                      |+.+|-+.+
T Consensus       614 G~~~Gl~~f  622 (758)
T 3ott_A          614 GGADGFGIS  622 (758)
T ss_dssp             ECBSEEEEE
T ss_pred             ecCCceEEE
Confidence            677776554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.46  E-value=1.5  Score=40.23  Aligned_cols=208  Identities=12%  Similarity=0.156  Sum_probs=97.1

Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec----CC-------cEEEEecCCCCCccccceee
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS----DH-------AVVLWSERDAEDSWKPKALH  369 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~  369 (540)
                      .+..||..+.+  .....+...   ........... ++.+++.|+.    ++       .+.+||..+.+-    ..+.
T Consensus        25 ~~~~yd~~~~~--W~~~~~~~~---~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W----~~~~   94 (318)
T 2woz_A           25 AAVAYDPMENE--CYLTALAEQ---IPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW----VGLP   94 (318)
T ss_dssp             EEEEEETTTTE--EEEEEECTT---SCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEE----EECS
T ss_pred             ceEEECCCCCc--eecccCCcc---CCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcE----EECC
Confidence            48899988762  222222210   11112222233 7788888873    12       177888877652    1111


Q ss_pred             cccCCcceeEEEeccCCCEEEEEeCC-------CeEEEEECCCCCeeeeeccCcc--EEEEeecCCCCCceEEEEEcC--
Q 009203          370 RNLHSSAVMGVAGMQQKQIVLSAGAD-------KRIIGFDAGVGRADFKHQIESK--CMSVLPNPCDFNLFMVQTGTP--  438 (540)
Q Consensus       370 ~~~~~~~v~~l~~s~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--  438 (540)
                      .......-.+++.. ++.+++.|+.+       ..+.+||+.+.+-.........  ..+++.. .+   .+++.|+.  
T Consensus        95 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~---~iyv~GG~~~  169 (318)
T 2woz_A           95 PLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH-NG---MIYCLGGKTD  169 (318)
T ss_dssp             CBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE-TT---EEEEECCEES
T ss_pred             CCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE-CC---EEEEEcCCCC
Confidence            10011111122222 56777777754       2588899887654322111111  1111111 22   45566543  


Q ss_pred             ----CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeccCCCCcccccccc
Q 009203          439 ----GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD-----PVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       439 ----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~  509 (540)
                          -..+.+||..+..=.  ...   ...........+.+  ++.+++.|+.+     ..+.+||+.+.....+..+..
T Consensus       170 ~~~~~~~~~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~  242 (318)
T 2woz_A          170 DKKCTNRVFIYNPKKGDWK--DLA---PMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ  242 (318)
T ss_dssp             SSCBCCCEEEEETTTTEEE--EEC---CCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS
T ss_pred             CCCccceEEEEcCCCCEEE--ECC---CCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC
Confidence                245899999865411  111   11111112223333  67777777654     347788888643333333322


Q ss_pred             cccceeEEEEcCCCCEEEEEEcC
Q 009203          510 HQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       510 h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                      .......+.+  ++++++.||.+
T Consensus       243 ~r~~~~~~~~--~~~i~v~GG~~  263 (318)
T 2woz_A          243 ERSSISLVSL--AGSLYAIGGFA  263 (318)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBC
T ss_pred             cccceEEEEE--CCEEEEECCee
Confidence            2111122222  56777777754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.098  Score=48.60  Aligned_cols=118  Identities=6%  Similarity=-0.047  Sum_probs=65.1

Q ss_pred             eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEE--eCCCCCEEEEE-ecCCcEEEEecCCCCCccc
Q 009203          288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF--LPWENPCFATG-GSDHAVVLWSERDAEDSWK  364 (540)
Q Consensus       288 ~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~s~-~~dg~i~iwd~~~~~~~~~  364 (540)
                      .++.+    +.||.|.-+|..+|+.   .=.+...  ...++....-  .+.++..++.. +.||.|..++..+|...+.
T Consensus        12 ~V~v~----t~dG~l~Ald~~tG~~---~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~   82 (339)
T 2be1_A           12 ILIAA----DVEGGLHAVDRRNGHI---IWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLP   82 (339)
T ss_dssp             EEEEE----ETTSCEEEEETTTTEE---EEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred             EEEEE----eCCCeEEEEECCCCcE---EEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence            56666    7899999999888732   2222210  0011211110  01122333333 5799999999888754322


Q ss_pred             cceeecccCCcceeE---EEe-----ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC
Q 009203          365 PKALHRNLHSSAVMG---VAG-----MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE  415 (540)
Q Consensus       365 ~~~~~~~~~~~~v~~---l~~-----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  415 (540)
                      ...- ......++..   ...     +..+..+++|+.+|.+...|+++|+.+..+...
T Consensus        83 ~~~~-~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           83 LSIR-QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             EEHH-HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             eccc-cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            2111 0111122221   000     014678899999999999999999998876654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.12  E-value=1.5  Score=40.31  Aligned_cols=179  Identities=10%  Similarity=-0.025  Sum_probs=87.0

Q ss_pred             EEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC----C-------CeEEEEECCCCCee
Q 009203          341 CFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA----D-------KRIIGFDAGVGRAD  409 (540)
Q Consensus       341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~----d-------g~i~iwd~~~~~~~  409 (540)
                      +++.|+  ..+.+||..+.+-  ..  .............+...++.+++.|+.    +       ..+.+||..+++-.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W--~~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~   80 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANEC--YC--ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL   80 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEE--EE--EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred             EEEEcC--CceEEECCCCCeE--ec--CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence            345555  5688999988762  21  111111111222222346788888873    1       12788898876542


Q ss_pred             eeeccCcc---EEEEeecCCCCCceEEEEEcCC--------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC
Q 009203          410 FKHQIESK---CMSVLPNPCDFNLFMVQTGTPG--------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD  478 (540)
Q Consensus       410 ~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  478 (540)
                      ........   ...+..  .+   .+++.|+.+        ..+.+||..+..=  ....   .+.........+.+  +
T Consensus        81 ~~~~~p~~r~~~~~~~~--~~---~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W--~~~~---~~p~~r~~~~~~~~--~  148 (315)
T 4asc_A           81 GMPPLPSPRCLFGLGEA--LN---SIYVVGGREIKDGERCLDSVMCYDRLSFKW--GESD---PLPYVVYGHTVLSH--M  148 (315)
T ss_dssp             ECCCBSSCEESCEEEEE--TT---EEEEECCEESSTTCCBCCCEEEEETTTTEE--EECC---CCSSCCBSCEEEEE--T
T ss_pred             ECCCCCcchhceeEEEE--CC---EEEEEeCCcCCCCCcccceEEEECCCCCcE--eECC---CCCCcccceeEEEE--C
Confidence            22111111   111222  12   456666532        4588999886541  1110   11111122222333  6


Q ss_pred             CCEEEEEeC-C-----CcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC-----cEEEEe
Q 009203          479 GLYITSGSA-D-----PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL-----NIGLHK  539 (540)
Q Consensus       479 g~~l~sg~~-d-----g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg-----~v~iw~  539 (540)
                      +++++.|+. +     ..+.+||..+.....+..+......-..+.+  ++++++.||.++     .+.+||
T Consensus       149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd  218 (315)
T 4asc_A          149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYS  218 (315)
T ss_dssp             TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEE
T ss_pred             CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEE
Confidence            777777776 2     4688999886322333322211111122222  667788887665     355555

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.77  E-value=3.3  Score=40.36  Aligned_cols=121  Identities=12%  Similarity=0.168  Sum_probs=63.3

Q ss_pred             CceEEEEEecCCCc-EEEEEeCCceEEEEEcCCCCCcceeecccccCCC----CCCCCceeEEEecC---CCeEEEEeec
Q 009203          224 RKLRSLSLNPVNEQ-LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP----KHRRWPEDIAWHPQ---GNSLFSAHTA  295 (540)
Q Consensus       224 ~~V~~l~~spd~~~-~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~----~h~~~V~~~~~~~~---~~~l~s~~~~  295 (540)
                      ..-+.|+|.|| +. .|+.+...|.|++++.........+.........    +.......|+|+|+   ..+|++.++.
T Consensus        14 ~~P~~~a~~pd-G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGD-GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSS-SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCC-CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            45689999997 54 3444567899999975432111111111111111    22466889999996   3345544332


Q ss_pred             CCC-------C--CeEEEEecCCCC--------CceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC
Q 009203          296 DSG-------D--SQISVLNLNKTK--------GRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD  348 (540)
Q Consensus       296 ~~~-------d--~~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  348 (540)
                      ...       +  ..|.-|.+..+.        ....+........|.  ...|+|.| ++.++++.+..
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgp-DG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGP-DGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECT-TSCEEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECC-CCcEEEEeCCC
Confidence            111       1  245556664321        111222221222343  57899999 88887776643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.74  E-value=4.7  Score=44.72  Aligned_cols=197  Identities=11%  Similarity=0.075  Sum_probs=112.1

Q ss_pred             EEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecC
Q 009203          229 LSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN  308 (540)
Q Consensus       229 l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~  308 (540)
                      .-.+| ..+.+|.-. ..++.|+|+++...+....         ....|.-=.|-.+. .|+..     .+..|..|++.
T Consensus        71 AIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~---------~~e~VvfWkWis~~-~l~lV-----T~~aVyHW~~~  133 (1630)
T 1xi4_A           71 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHT---------MTDDVTFWKWISLN-TVALV-----TDNAVYHWSME  133 (1630)
T ss_pred             hccCC-CcceEEEec-CCeEEEeehHHhhhhcccc---------cCCCceEEEecCCC-eeEEE-----cCCeEEEeccC
Confidence            44678 467777665 6789999998876555442         12346556665443 44443     47789999997


Q ss_pred             CCCCceeEEeecCCCC-cccceeEEEEeCCCCCEEEEEe-------cCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203          309 KTKGRACVTFLDDKPH-VKGIINSIIFLPWENPCFATGG-------SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       309 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                      ..  ..+...+..++. ....|..-..++ +.++++..|       -.|.+.+|..+.+..    +.+  .||.+....+
T Consensus       134 ~~--s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s----Q~i--egha~~F~~~  204 (1630)
T 1xi4_A          134 GE--SQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----QPI--EGHAASFAQF  204 (1630)
T ss_pred             CC--CccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccccc----hhh--hHhHhhhhee
Confidence            43  233444443211 134577777788 777776543       357899999987652    333  3455444333


Q ss_pred             Eec--cC-CCEEEEEeC---CCeEEEEECCCC---Ceeee-------ec---cCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203          381 AGM--QQ-KQIVLSAGA---DKRIIGFDAGVG---RADFK-------HQ---IESKCMSVLPNPCDFNLFMVQTGTPGRQ  441 (540)
Q Consensus       381 ~~s--~~-~~~l~~~~~---dg~i~iwd~~~~---~~~~~-------~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~  441 (540)
                      ...  +. ...+..+..   .+.++|.++...   ...+.       +.   ......++..++..   -++..-+.-|.
T Consensus       205 ~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~---g~iy~itk~G~  281 (1630)
T 1xi4_A          205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH---DVVFLITKYGY  281 (1630)
T ss_pred             ccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc---CEEEEEecCce
Confidence            331  11 122222222   368888888543   11110       00   01223344444433   35566677899


Q ss_pred             EEEEECCCCccee
Q 009203          442 LRLYDIRLRQTEI  454 (540)
Q Consensus       442 v~i~d~~~~~~~~  454 (540)
                      |.+||+.++.+..
T Consensus       282 ~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          282 IHLYDLETGTCIY  294 (1630)
T ss_pred             EEEEecccchhhh
Confidence            9999999987644

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.65  E-value=3.8  Score=40.44  Aligned_cols=110  Identities=11%  Similarity=0.034  Sum_probs=62.8

Q ss_pred             cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee--eecc----ccccCccccCeEEEEEcCCCCEEEEEeCCCc
Q 009203          417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH--AFGW----KQESSESQSALINQSWSPDGLYITSGSADPV  490 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~--~~~~----~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~  490 (540)
                      ....+..+|++.  .++++|--+.++.++|+......+.  .+..    .... .-.-.....+|+++|....+---|..
T Consensus       324 sPHGv~vsPDGk--yi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfidSq  400 (638)
T 3sbq_A          324 NPHGCNTSSDGK--YFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFIDSQ  400 (638)
T ss_dssp             SCCCEEECTTSC--EEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred             CCcceeeCCCCC--EEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeecce
Confidence            334455566663  3556677789999999984221000  0000    0011 12345778899999966667778999


Q ss_pred             EEEEeccCC------C--CcccccccccccceeEEE------EcCCCCEEEEEE
Q 009203          491 IHLFDIRYS------A--NKPSQSIRAHQKRVFKAV------WHYSHPLLISIS  530 (540)
Q Consensus       491 i~iwd~~~~------~--~~~~~~~~~h~~~i~~l~------~s~~~~~l~s~~  530 (540)
                      |.-|++...      +  ...+..+..|-.+ -.+.      -.+||++|++..
T Consensus       401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred             EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence            999999852      0  1233333333321 1222      257888888874

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.62  E-value=3.9  Score=42.40  Aligned_cols=204  Identities=7%  Similarity=0.020  Sum_probs=98.1

Q ss_pred             cCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE-eec--CCCCcccceeEEEEeCCCCCEEEEEecC------CcEEEE
Q 009203          284 PQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT-FLD--DKPHVKGIINSIIFLPWENPCFATGGSD------HAVVLW  354 (540)
Q Consensus       284 ~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~-~~~--~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iw  354 (540)
                      .++.+++.|...+..-..+.+||..+..- ..+. .+.  ..+.....-..+.+.. ++.+++.|+.+      ..+.+|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W-~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKI-DMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCE-EEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeE-EEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEE
Confidence            45666666611001234688899887532 1122 100  0111112223333432 45677777654      357889


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC--eEEEEECCCCCeeeeec------cCccEEEEeecCC
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK--RIIGFDAGVGRADFKHQ------IESKCMSVLPNPC  426 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~  426 (540)
                      |..+...    ..+........-.+++...++.+++.|+.++  .+.+||+.++.-.....      ......++.++..
T Consensus       474 d~~t~~W----~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          474 DMKTREW----SMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             ETTTTEE----EECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             eCCCCcE----EECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            9887542    1111101111112233323788888887655  69999998765422211      1111122333332


Q ss_pred             -CCCceEEEEEcC--C-----CeEEEEECCCCcc--e--eeeeccccccCccccCeEEEEEcCCCCEEEEEeC-------
Q 009203          427 -DFNLFMVQTGTP--G-----RQLRLYDIRLRQT--E--IHAFGWKQESSESQSALINQSWSPDGLYITSGSA-------  487 (540)
Q Consensus       427 -~~~~~~l~~~~~--d-----g~v~i~d~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-------  487 (540)
                       +   .+++.|+.  +     +.+.+||+.+..-  .  ......  ...........+.+ .++.+++.|+.       
T Consensus       550 ~~---~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~  623 (695)
T 2zwa_A          550 SK---QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFD  623 (695)
T ss_dssp             TT---EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCC
T ss_pred             CC---EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEEe-CCCEEEEECCccCCCCCC
Confidence             2   46666654  2     4689999987651  0  111100  00001111222333 23778888874       


Q ss_pred             -CCcEEEEeccCC
Q 009203          488 -DPVIHLFDIRYS  499 (540)
Q Consensus       488 -dg~i~iwd~~~~  499 (540)
                       ...|.+||+.+.
T Consensus       624 ~~~~v~~yd~~t~  636 (695)
T 2zwa_A          624 RTNSIISLDPLSE  636 (695)
T ss_dssp             TTTSEEEEETTTT
T ss_pred             CCCeEEEEECCCC
Confidence             346899999863

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.54  E-value=3.8  Score=39.97  Aligned_cols=115  Identities=10%  Similarity=0.031  Sum_probs=59.3

Q ss_pred             ceeEEEecCCC-eEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC------CcccceeEEEEeCC---CCCEEEEEe
Q 009203          277 PEDIAWHPQGN-SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP------HVKGIINSIIFLPW---ENPCFATGG  346 (540)
Q Consensus       277 V~~~~~~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~p~---~~~~l~s~~  346 (540)
                      .+.|+|.|+|. .|+++    ...|.|++++.........+..+....      ........|+|+|.   ++.+.++-+
T Consensus        16 P~~~a~~pdG~~rl~V~----er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt   91 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFIL----EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT   91 (463)
T ss_dssp             EEEEECCSSSSCCEEEE----ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred             ceEEEECCCCCeEEEEE----eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence            46899999996 34444    678999999754321111122221100      01345789999992   244444433


Q ss_pred             cC------------CcEEEEecCCCC--C--ccccceeec---ccCCcceeEEEeccCCCEEEEEeCC
Q 009203          347 SD------------HAVVLWSERDAE--D--SWKPKALHR---NLHSSAVMGVAGMQQKQIVLSAGAD  395 (540)
Q Consensus       347 ~d------------g~i~iwd~~~~~--~--~~~~~~~~~---~~~~~~v~~l~~s~~~~~l~~~~~d  395 (540)
                      .+            ..|.-|.+..+.  .  ......+..   ....-....|+|.|||.+.++.+..
T Consensus        92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence            21            134445554321  0  001111111   1112235789999999887776653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.20  E-value=1.7  Score=45.19  Aligned_cols=153  Identities=15%  Similarity=0.111  Sum_probs=79.1

Q ss_pred             CCCEEEEEecC----CcEEEEecCCCCCccccceee-c-----ccCCcceeEEEecc-CCCEEEEEeCCC------eEEE
Q 009203          338 ENPCFATGGSD----HAVVLWSERDAEDSWKPKALH-R-----NLHSSAVMGVAGMQ-QKQIVLSAGADK------RIIG  400 (540)
Q Consensus       338 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~-~-----~~~~~~v~~l~~s~-~~~~l~~~~~dg------~i~i  400 (540)
                      ++.+++.|+.+    ..+.+||..+...    ..+. .     ......-.+++..+ ++.+++.|+.++      .+.+
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W----~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~  472 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKI----DMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI  472 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCE----EEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeE----EEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence            67788888754    4588899887652    2221 0     00111122333333 677777777533      5788


Q ss_pred             EECCCCCeeeeecc--CccEEEEeecCCCCCceEEEEEcCCC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          401 FDAGVGRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPGR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       401 wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      ||+.+.+-......  .....+.+....+   .+++.|+.++  .+.+||..+..=  .................++.+.
T Consensus       473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~---~iyv~GG~~~~~~v~~yd~~t~~W--~~~~~~g~~p~~r~~~~a~v~~  547 (695)
T 2zwa_A          473 FDMKTREWSMIKSLSHTRFRHSACSLPDG---NVLILGGVTEGPAMLLYNVTEEIF--KDVTPKDEFFQNSLVSAGLEFD  547 (695)
T ss_dssp             EETTTTEEEECCCCSBCCBSCEEEECTTS---CEEEECCBCSSCSEEEEETTTTEE--EECCCSSGGGGSCCBSCEEEEE
T ss_pred             EeCCCCcEEECCCCCCCcccceEEEEcCC---EEEEECCCCCCCCEEEEECCCCce--EEccCCCCCCCcccceeEEEEe
Confidence            99887543322111  1111122221122   4666666544  689999987541  1111000011112222345555


Q ss_pred             CC-CCEEEEEeC--C-----CcEEEEeccCC
Q 009203          477 PD-GLYITSGSA--D-----PVIHLFDIRYS  499 (540)
Q Consensus       477 p~-g~~l~sg~~--d-----g~i~iwd~~~~  499 (540)
                      .+ +.+++.|+.  +     ..+.+||+.+.
T Consensus       548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             TTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             CCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence            55 677777775  2     35889999874

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=93.95  E-value=0.096  Score=30.43  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=27.5

Q ss_pred             HHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 009203           30 EALVALIEHRTKEVQHLRQRISYYKSQLEEAEK   62 (540)
Q Consensus        30 ~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~   62 (540)
                      |.|++.|++-.+||+..+++|+.+|.++.++++
T Consensus         5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee   37 (42)
T 2l5g_B            5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE   37 (42)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568888889999999988888888888887765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.71  E-value=4.5  Score=37.73  Aligned_cols=51  Identities=12%  Similarity=0.137  Sum_probs=23.9

Q ss_pred             eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC------cEEEEeccC
Q 009203          441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP------VIHLFDIRY  498 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg------~i~iwd~~~  498 (540)
                      .+.+||+.+..=..  ++   .+......-.++.+  ++++++.|+.++      .|.+++++.
T Consensus       286 ~~~~yd~~~~~W~~--~~---~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~v~~l~~~~  342 (357)
T 2uvk_A          286 STDIHLWHNGKWDK--SG---ELSQGRAYGVSLPW--NNSLLIIGGETAGGKAVTDSVLITVKD  342 (357)
T ss_dssp             CCEEEECC---CEE--EE---ECSSCCBSSEEEEE--TTEEEEEEEECGGGCEEEEEEEEEC-C
T ss_pred             eEEEEecCCCceee--CC---CCCCCcccceeEEe--CCEEEEEeeeCCCCCEeeeEEEEEEcC
Confidence            57789987654111  11   11111112223333  678888888553      355567775

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.60  E-value=6.2  Score=38.99  Aligned_cols=71  Identities=11%  Similarity=0.064  Sum_probs=50.0

Q ss_pred             CeEEEEEcCCCCEEEEEe-CCCcEEEEeccCCC----Ccc-------cccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203          469 ALINQSWSPDGLYITSGS-ADPVIHLFDIRYSA----NKP-------SQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG  536 (540)
Q Consensus       469 ~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~~~~----~~~-------~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~  536 (540)
                      ....+.++|||+++++++ -+.++.++|+..-.    .+.       +.... -.-.....+|.++|....|.--|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence            456789999999988765 57899999998410    111       11222 123567899999996666667999999


Q ss_pred             EEeC
Q 009203          537 LHKI  540 (540)
Q Consensus       537 iw~l  540 (540)
                      -|+|
T Consensus       403 kWni  406 (638)
T 3sbq_A          403 KWNM  406 (638)
T ss_dssp             EEEH
T ss_pred             EEec
Confidence            9985

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=93.55  E-value=0.39  Score=32.18  Aligned_cols=49  Identities=14%  Similarity=0.233  Sum_probs=41.4

Q ss_pred             HHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhccC
Q 009203           29 EEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLRCQ   77 (540)
Q Consensus        29 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~   77 (540)
                      ...|..+++++..|+.+....|..++++|.+.+..+.+++.+|-++++.
T Consensus        21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV   69 (72)
T 3nmd_A           21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            6677888888888888888888888999999999999999998887653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.36  E-value=4.7  Score=36.88  Aligned_cols=144  Identities=14%  Similarity=0.147  Sum_probs=71.1

Q ss_pred             CCCEEEEEecC-------CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC------CCeEEEEECC
Q 009203          338 ENPCFATGGSD-------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA------DKRIIGFDAG  404 (540)
Q Consensus       338 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~------dg~i~iwd~~  404 (540)
                      ++.+++.|+.+       ..+.+||+.+.+-    ..+........-.+++. .++.+++.|+.      -..+.+||+.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~  183 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW----SEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPK  183 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE----EEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCE----eECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCC
Confidence            56777888764       2478888887652    11111000011112222 35677777764      2358999998


Q ss_pred             CCCeeeeeccC---ccEEEEeecCCCCCceEEEEEcCC-----CeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          405 VGRADFKHQIE---SKCMSVLPNPCDFNLFMVQTGTPG-----RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       405 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      +.+-.......   .....+...  +   .+++.|+.+     ..+.+||+.+..=.  .+.   .+.........+.+ 
T Consensus       184 ~~~W~~~~~~p~~r~~~~~~~~~--~---~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~~---~~p~~r~~~~~~~~-  252 (318)
T 2woz_A          184 KGDWKDLAPMKTPRSMFGVAIHK--G---KIVIAGGVTEDGLSASVEAFDLKTNKWE--VMT---EFPQERSSISLVSL-  252 (318)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEET--T---EEEEEEEEETTEEEEEEEEEETTTCCEE--ECC---CCSSCCBSCEEEEE-
T ss_pred             CCEEEECCCCCCCcccceEEEEC--C---EEEEEcCcCCCCccceEEEEECCCCeEE--ECC---CCCCcccceEEEEE-
Confidence            76533221111   111122222  2   455555432     35778998765411  111   11111122223333 


Q ss_pred             CCCCEEEEEeCC--------------CcEEEEeccC
Q 009203          477 PDGLYITSGSAD--------------PVIHLFDIRY  498 (540)
Q Consensus       477 p~g~~l~sg~~d--------------g~i~iwd~~~  498 (540)
                       ++.+++.|+.+              ..+.+||+.+
T Consensus       253 -~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  287 (318)
T 2woz_A          253 -AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK  287 (318)
T ss_dssp             -TTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred             -CCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence             57777777654              3577888876

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=92.53  E-value=6  Score=35.97  Aligned_cols=181  Identities=7%  Similarity=0.047  Sum_probs=96.7

Q ss_pred             eEEEecCCCeEEEEeecCC----------CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe--
Q 009203          279 DIAWHPQGNSLFSAHTADS----------GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG--  346 (540)
Q Consensus       279 ~~~~~~~~~~l~s~~~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--  346 (540)
                      +--++++|++|+.+....+          ....|+..+++....   .....      .  .+..|++ +++.|+-..  
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~---~~l~~------~--~~~~~s~-~g~~Iy~~~~~  124 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS---TVLDP------D--PCIYASL-IGNYIYYLHYD  124 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC---EEEEC------S--CEEEEEE-ETTEEEEEEES
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc---eEeec------C--CccEEEE-eCCEEEEEeec
Confidence            3456889998887732110          134677777775421   22211      1  1236777 777777665  


Q ss_pred             --cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCCCeeeeeccCccEEEEee
Q 009203          347 --SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVGRADFKHQIESKCMSVLP  423 (540)
Q Consensus       347 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  423 (540)
                        .+..|+..++....    ...+..  +.  +  ..|+++++.|+..+. ...|.+.++..+........  ... ..+
T Consensus       125 ~~~~~~Iy~~~~dGs~----~~~lt~--~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--~~~-~~~  191 (302)
T 3s25_A          125 TQTATSLYRIRIDGEE----KKKIKN--HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--NCY-KPV  191 (302)
T ss_dssp             SSSCEEEEEEETTSCC----CEEEES--SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--CEE-EEE
T ss_pred             CCCCceEEEEECCCCC----eEEEeC--CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--Ccc-cee
Confidence              23456666666544    233322  21  2  456778888887665 67888889876654333321  111 223


Q ss_pred             cCCCCCceEEEEEcCC-CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe--CCCcEEEEeccC
Q 009203          424 NPCDFNLFMVQTGTPG-RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS--ADPVIHLFDIRY  498 (540)
Q Consensus       424 ~~~~~~~~~l~~~~~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~--~dg~i~iwd~~~  498 (540)
                      .|.+.  .+..+...+ ..|..-++........        .  ...+  ..|+|++.+|.-+.  ..+.|..-+++.
T Consensus       192 ~P~g~--~iy~t~~~~~~~I~~~~ldG~~~~~L--------t--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          192 VLDDT--NVYYMDVNRDNAIVHVNINNPNPVVL--------T--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             EEETT--EEEEEEGGGTTEEEEECSSSCCCEEC--------S--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             eecCC--EEEEEEcCCCcEEEEEECCCCCeEEE--------e--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            46552  223333222 4666666665543221        1  1122  34788898887653  235566666663

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=92.44  E-value=7.5  Score=36.85  Aligned_cols=185  Identities=15%  Similarity=0.072  Sum_probs=85.1

Q ss_pred             cceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc-cC--------CcceeEEEeccC-CCEEEEEeCCC
Q 009203          327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN-LH--------SSAVMGVAGMQQ-KQIVLSAGADK  396 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~--------~~~v~~l~~s~~-~~~l~~~~~dg  396 (540)
                      ..+.+|.+.|.+...|+.+..++.|...  ..+...|........ .+        ...+.++.+.|+ ...|+.++..+
T Consensus       177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s--~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          177 PKMHSILVDPRDPKHLYIGMSSGGVFES--TDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             CEEEEEEECTTCTTCEEEEEETBEEEEE--SSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             CceeEEEECCCCCCEEEEEECCCCEEEE--CCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            3578999988445556656555544433  222222221110000 00        134888999885 45666666544


Q ss_pred             eEEEEECCCCCeeeeec--cC----ccEEEEeecCCCCCceEEEEEc---------CCCeEEEEECCCCcceeeeecccc
Q 009203          397 RIIGFDAGVGRADFKHQ--IE----SKCMSVLPNPCDFNLFMVQTGT---------PGRQLRLYDIRLRQTEIHAFGWKQ  461 (540)
Q Consensus       397 ~i~iwd~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~l~~~~---------~dg~v~i~d~~~~~~~~~~~~~~~  461 (540)
                       |...+-. ++.-....  ..    ..+..+..+|.+....++++..         .++...+|...++......+.  .
T Consensus       255 -l~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~  330 (394)
T 3b7f_A          255 -IYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--R  330 (394)
T ss_dssp             -EEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--B
T ss_pred             -EEEeCCC-CCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--C
Confidence             4444322 32221111  11    2345677776544323333211         133345666555332222211  0


Q ss_pred             ccCccc----cCeEEEEEcCC-CCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEc
Q 009203          462 ESSESQ----SALINQSWSPD-GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH  520 (540)
Q Consensus       462 ~~~~~~----~~v~~~~~sp~-g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s  520 (540)
                      .+....    .....++++|. ...|+.++.++.|..-+-.   +.....+..+...+.+|+|.
T Consensus       331 glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~D~---G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          331 GLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASADE---GEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             TSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEESST---TSBCEEEECSCSCEEEEEEE
T ss_pred             CCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEECCC---CCCceEcccCCCCeeEEEEe
Confidence            111100    01235788874 3456667666665433221   44444444444457777764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.35  E-value=0.4  Score=44.52  Aligned_cols=118  Identities=9%  Similarity=0.067  Sum_probs=69.4

Q ss_pred             CCEEEEEeCCCeEEEEECCCCCeeeeeccC--ccEEEEeecCCCCCceEEEEE-cCCCeEEEEECCCCcceeeeeccccc
Q 009203          386 KQIVLSAGADKRIIGFDAGVGRADFKHQIE--SKCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQTEIHAFGWKQE  462 (540)
Q Consensus       386 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~~~~~~~~  462 (540)
                      +..+++++.||.|.-+|..+|+........  ..............+..++.. +.||.|..+|..++.... .+.....
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccc
Confidence            357889999999999999999998876654  233322111110111234443 689999999988764322 1111110


Q ss_pred             cCccccCeEE---EEE-c----CCCCEEEEEeCCCcEEEEeccCCCCccccccc
Q 009203          463 SSESQSALIN---QSW-S----PDGLYITSGSADPVIHLFDIRYSANKPSQSIR  508 (540)
Q Consensus       463 ~~~~~~~v~~---~~~-s----p~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  508 (540)
                      .  ...++..   ..+ .    ..+..+++|+.+|.+...|+.+  ++.+..+.
T Consensus        89 v--~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t--G~~~W~~~  138 (339)
T 2be1_A           89 V--STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN--GEIISAFG  138 (339)
T ss_dssp             H--TTCSEEEECC----------CCEEEEECEEEEEEEEEETTT--CCEEEEES
T ss_pred             e--eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCC--CcEEEEEe
Confidence            0  1112221   001 0    1456788999999999999998  66655554

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=90.70  E-value=0.63  Score=32.22  Aligned_cols=53  Identities=8%  Similarity=0.129  Sum_probs=42.1

Q ss_pred             CChhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 009203           23 NSKDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLARLR   75 (540)
Q Consensus        23 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~   75 (540)
                      .+.+...+.|.-.+.+.++.++.|...+..-+.++..+++++..+..++....
T Consensus        10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34557888899999999999999999999999999999888888777766554

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=88.27  E-value=17  Score=34.25  Aligned_cols=72  Identities=10%  Similarity=0.024  Sum_probs=37.2

Q ss_pred             ceeEEEEeCCC-CCEEEEEecCCcEEEEecCCCCCccccceeec---------------ccCCcceeEEEeccC-CCEEE
Q 009203          328 IINSIIFLPWE-NPCFATGGSDHAVVLWSERDAEDSWKPKALHR---------------NLHSSAVMGVAGMQQ-KQIVL  390 (540)
Q Consensus       328 ~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~~~~v~~l~~s~~-~~~l~  390 (540)
                      .|.++++.|.+ ...+..++..+.|...  ..+...|.......               ......+.+|.+.|. ...|+
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~  193 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY  193 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred             ceeEEEeCCCCCCCEEEEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence            47889998744 5666666666655444  33222222211000               012245788999873 44555


Q ss_pred             EEeCCCeEEEE
Q 009203          391 SAGADKRIIGF  401 (540)
Q Consensus       391 ~~~~dg~i~iw  401 (540)
                      .+..++.|...
T Consensus       194 vg~~~ggl~~s  204 (394)
T 3b7f_A          194 IGMSSGGVFES  204 (394)
T ss_dssp             EEEETBEEEEE
T ss_pred             EEECCCCEEEE
Confidence            55544444433

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=87.47  E-value=17  Score=33.33  Aligned_cols=287  Identities=11%  Similarity=0.022  Sum_probs=135.0

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEE---ecCCCCC
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVL---NLNKTKG  312 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vw---d~~~~~~  312 (540)
                      ...+++-+.+|.|+--.+.+-.....--...........+.+..+........|+.-    +..|.++-.   ++.....
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~f----T~~Gr~y~~~~~~lp~~~r   78 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFF----TTQGRVYRAKAYDLPEASR   78 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEE----ETTSEEEEEEGGGSCBCCS
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEE----eCCCeEEEEEHHHCcCCCc
Confidence            456778888888886553321100000000000001122344445444445555544    567766544   4443210


Q ss_pred             ---ceeE-EeecCCCCcccceeEEEEeCC--CCCEEEEEecCCcEEEEecCCCCCccc--cceeecccCCcceeEEEecc
Q 009203          313 ---RACV-TFLDDKPHVKGIINSIIFLPW--ENPCFATGGSDHAVVLWSERDAEDSWK--PKALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       313 ---~~~~-~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~l~~s~  384 (540)
                         ...+ ..+.. . ....|.++...+.  +...++..+.+|.|+-..+..-....+  ...+... ..+.+..+....
T Consensus        79 ~~~G~~i~~~l~l-~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk-e~D~lv~~~~~~  155 (327)
T 3uc1_A           79 TARGQHVANLLAF-Q-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR-DNDELVGAVLCS  155 (327)
T ss_dssp             SSCCEEHHHHTTC-C-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC-TTCCEEEEEEEC
T ss_pred             cCCCEEHHHccCC-C-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC-CCCEEEEEEEec
Confidence               0111 11221 1 1344655544331  467899999999999887654321110  1111111 235555555555


Q ss_pred             CCCEEEEEeCCCeEEEEECC--CCC---------eeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          385 QKQIVLSAGADKRIIGFDAG--VGR---------ADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       385 ~~~~l~~~~~dg~i~iwd~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      ....|+..+..|.+..+...  .-.         .......+..+.++...+.+   ..++..+..|.++.-.+......
T Consensus       156 ~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~---~~ll~~T~~G~~Krt~l~e~~~~  232 (327)
T 3uc1_A          156 AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREG---TYLLVATSGGYAKRTAIEEYPVQ  232 (327)
T ss_dssp             TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTT---CEEEEEETTSEEEEEEGGGSCBC
T ss_pred             CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCC---CEEEEEeCCCcEEEEEHHHcccc
Confidence            56778888999999888876  211         11123334556666555433   47888889999998886543211


Q ss_pred             ee-eeccc-cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC-------CCcccccccccccceeEEEEcCC-C
Q 009203          454 IH-AFGWK-QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS-------ANKPSQSIRAHQKRVFKAVWHYS-H  523 (540)
Q Consensus       454 ~~-~~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~-------~~~~~~~~~~h~~~i~~l~~s~~-~  523 (540)
                      .. ..+.. ..+..-...+..+....+...++..+.+|.+.-++...-       .+.....+. ....|.++...+. .
T Consensus       233 ~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~-~~d~vv~~~~~~~~~  311 (327)
T 3uc1_A          233 GRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLG-EGDTLLAIARNAEES  311 (327)
T ss_dssp             CTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCC-TTCCEEEEEECC---
T ss_pred             CcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecC-CCCEEEEEEEcCCCc
Confidence            00 00000 011111233444444344556677778888888877641       011111222 2345666665443 3


Q ss_pred             CEEEEEEcCC
Q 009203          524 PLLISISSDL  533 (540)
Q Consensus       524 ~~l~s~~~dg  533 (540)
                      ..+.+.+.+|
T Consensus       312 ~~~~~~~~~g  321 (327)
T 3uc1_A          312 GDDNAVDANG  321 (327)
T ss_dssp             ----------
T ss_pred             ceEEEEecCC
Confidence            4455555555

>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1

Probab=87.21  E-value=2.7  Score=23.82  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=16.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHh
Q 009203           49 RISYYKSQLEEAEKRLEDSQSKLARL   74 (540)
Q Consensus        49 ~~~~~~~~l~~~~~~~~~~~~~l~~~   74 (540)
                      +++.++.+|+.+++++..+.+.+..+
T Consensus        21 elaaleselqalekklaalksklqal   46 (48)
T 1g6u_A           21 ELAALESELQALEKKLAALKSKLQAL   46 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35556666677777766666666554

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=86.55  E-value=1.1  Score=28.21  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=21.0

Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 009203           40 TKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLA   72 (540)
Q Consensus        40 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~   72 (540)
                      ..+++.|+.+.+.++.+..++.++..++..+|.
T Consensus        18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355666666666666666666666666666554

>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A

Probab=85.81  E-value=1.5  Score=22.36  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=16.9

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhH
Q 009203           44 QHLRQRISYYKSQLEEAEKRLEDSQ   68 (540)
Q Consensus        44 ~~l~~~~~~~~~~l~~~~~~~~~~~   68 (540)
                      +.|.++.+.++.+|+.++++++.++
T Consensus         4 ealekkcaalesklqalekkleale   28 (31)
T 3ljm_A            4 EALEKKCAALESKLQALEKKLEALE   28 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666777777777777766654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=85.52  E-value=2.4  Score=33.17  Aligned_cols=46  Identities=20%  Similarity=0.344  Sum_probs=27.6

Q ss_pred             hHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHH
Q 009203           27 EQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLA   72 (540)
Q Consensus        27 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~   72 (540)
                      ...+.|.+.++.+.+|+..|+.++...+-+++++.+++.+++.++.
T Consensus        75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~  120 (138)
T 3hnw_A           75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN  120 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666777767766666666666555555555444433

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=84.44  E-value=22  Score=31.76  Aligned_cols=217  Identities=10%  Similarity=0.001  Sum_probs=115.2

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      .|..++..  ..+.+..    . ||.|..|-.+...... +..     .....|..++...  ...++. . ||.|+.|-
T Consensus        25 ~i~~ia~G--~~h~~~l----~-~G~v~~wG~n~~Gqlg-~p~-----~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG   87 (282)
T 3qhy_B           25 GVDAIAGG--YFHGLAL----K-GGKVLGWGANLNGQLT-MPA-----ATQSGVDAIAAGN--YHSLAL-K-DGEVIAWG   87 (282)
T ss_dssp             SCCEEEEC--SSEEEEE----E-TTEEEEEECCSSSTTS-CCG-----GGGSCCCEEEECS--SEEEEE-E-TTEEEEEE
T ss_pred             CCcEEEeC--CCeEEEE----E-CCEEEEEeCCCCCCCC-CCc-----cCCCCEEEEEeCC--CEEEEE-E-CCEEEEee
Confidence            45666553  2344444    5 8999999765431110 100     1123577777653  233333 4 89999998


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC-CCeeeeeccCccEEEEeecCCCCCceEEE
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV-GRADFKHQIESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  434 (540)
                      ......+..+..     -...|..++...  .+.+.-. ||.|+.|-... ++.-........+..++.....    .++
T Consensus        88 ~n~~Gqlg~P~~-----~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~----~~~  155 (282)
T 3qhy_B           88 GNEDGQTTVPAE-----ARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT----ALA  155 (282)
T ss_dssp             CCTTSTTCCCGG-----GSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE----EEE
T ss_pred             CCCCCCCCCCcc-----cCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE----EEE
Confidence            765432221111     124677787764  3344445 99999997654 3321222233455666554432    333


Q ss_pred             EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccce
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRV  514 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i  514 (540)
                      . . ||.|+.|-.........    .   ......|..++...+.. ++.  .||.|+.|-.... +.+-.... ....|
T Consensus       156 l-~-~G~v~~wG~n~~gqlg~----p---~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~-gqlg~p~~-~~~~v  221 (282)
T 3qhy_B          156 V-K-NGGVIAWGDNYFGQTTV----P---AEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRY-KQTTVPTE-ALSGV  221 (282)
T ss_dssp             E-E-TTEEEEEECCTTSTTSC----C---GGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTT-STTCCCGG-GGSSC
T ss_pred             E-E-CCEEEEecCCCCCCCCC----c---eecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCC-CCCCCCcc-cCCCc
Confidence            3 3 79999998775443221    1   01134677777654332 333  5999999987652 22111111 12346


Q ss_pred             eEEEEcCCCCEEEEEEcCCcEEEE
Q 009203          515 FKAVWHYSHPLLISISSDLNIGLH  538 (540)
Q Consensus       515 ~~l~~s~~~~~l~s~~~dg~v~iw  538 (540)
                      ..++-...- .++. . ||.|+.|
T Consensus       222 ~~i~~G~~h-~~al-~-~g~v~~w  242 (282)
T 3qhy_B          222 SAIASGEWY-SLAL-K-NGKVIAW  242 (282)
T ss_dssp             CEEEECSSC-EEEE-E-TTEEEEE
T ss_pred             eEEEcCCCE-EEEE-E-CCEEEEe
Confidence            777654432 2333 3 8888888

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=81.64  E-value=2.1  Score=27.02  Aligned_cols=30  Identities=13%  Similarity=0.215  Sum_probs=18.6

Q ss_pred             HhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 009203           36 IEHRTKEVQHLRQRISYYKSQLEEAEKRLE   65 (540)
Q Consensus        36 i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~   65 (540)
                      ++....|++.|+.++..++.+++++.++++
T Consensus        21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           21 IELLRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455666666666666666777766654

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=81.34  E-value=3.9  Score=27.52  Aligned_cols=49  Identities=16%  Similarity=0.187  Sum_probs=32.2

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 009203           25 KDEQEEALVALIEHRTKEVQHLRQRISYYKSQLEEAEKRLEDSQSKLAR   73 (540)
Q Consensus        25 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~   73 (540)
                      ..-..+.|++.+++...|.+.|+.++..++.....++.++.+++..+.+
T Consensus        28 Lnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr   76 (77)
T 2w83_C           28 LNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK   76 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445677888888888899999998888888888888887777766543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=80.97  E-value=33  Score=31.22  Aligned_cols=198  Identities=6%  Similarity=-0.031  Sum_probs=108.9

Q ss_pred             CCCEEEEEecCCcEEEEecCCCCCccc----cceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCC--------
Q 009203          338 ENPCFATGGSDHAVVLWSERDAEDSWK----PKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGV--------  405 (540)
Q Consensus       338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~--------  405 (540)
                      +...+++.+.+|.|+-..+..-.....    ...+.. ...+.+..+........++..+..|.++-+....        
T Consensus         7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~l-ke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~   85 (312)
T 1suu_A            7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL-NDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS   85 (312)
T ss_dssp             -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCC-CTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred             CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceeccc-CCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence            556788899999998876654321000    111111 1234455555555567788888889877776532        


Q ss_pred             -CCe---eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc-cccCccccCeEEEEEcCCCC
Q 009203          406 -GRA---DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK-QESSESQSALINQSWSPDGL  480 (540)
Q Consensus       406 -~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~  480 (540)
                       |..   ......+..+.++...+......+++..+..|.++...+....... ..+.. ..+.. ...+..+.....+.
T Consensus        86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-~~G~~~i~L~~-~d~lv~~~~~~~~~  163 (312)
T 1suu_A           86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-SRGVIVIKLND-KDFVTSAEIVFKDE  163 (312)
T ss_dssp             --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred             CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-CCcEEEEecCC-CCEEEEEEEeCCCC
Confidence             111   1123334455555443211011467788899999998875432110 00100 12233 34555555544556


Q ss_pred             EEEEEeCCCcEEEEeccCC-------CCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          481 YITSGSADPVIHLFDIRYS-------ANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       481 ~l~sg~~dg~i~iwd~~~~-------~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      .++..+.+|.+..+....-       .+.....+.. ...|.++..-.++..|++.+.+|..+..+
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~  228 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLN  228 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence            7888889999999988641       1112222332 34566666555566788888888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	540
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	5e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 33/325 (10%), Positives = 92/325 (28%), Gaps = 38/325 (11%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281
           H+  +  +  +P    + V+++ D  I++W  ++     +L   TD +          + 
Sbjct: 16  HRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC 341
                +                                    H      S + +      
Sbjct: 75  ASCSADMTIKLWDFQ-------------------GFECIRTMHGHDHNVSSVSIMPNGDH 115

Query: 342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGF 401
             +   D  + +W  +               H   V  V   Q   ++ S   D+ +  +
Sbjct: 116 IVSASRDKTIKMWEVQTGYCVKTFTG-----HREWVRMVRPNQDGTLIASCSNDQTVRVW 170

Query: 402 DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRL-----------YDIRLR 450
                    + +     +  +    + +   +   T     +             D  ++
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230

Query: 451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH 510
             ++             + +    +   G +I S + D  + ++D +    +  +++ AH
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK--NKRCMKTLNAH 288

Query: 511 QKRVFKAVWHYSHPLLISISSDLNI 535
           +  V    +H + P +++ S D  +
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQTV 313

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 22/174 (12%), Positives = 55/174 (31%), Gaps = 16/174 (9%)

Query: 235 NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD---CLSPKHRRWPEDIAWHPQGNSLFS 291
           +  L  + + D  +R+W + ++   A L        C+S         I+      +  S
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213

Query: 292 AHTAD---SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD 348
                   SG    ++   + + G   +T +         +  ++F         +   D
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD----NWVRGVLFHS-GGKFILSCADD 268

Query: 349 HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFD 402
             + +W  ++        A     H   V  +   +    V++   D+ +  ++
Sbjct: 269 KTLRVWDYKNKRCMKTLNA-----HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 4e-10
 Identities = 33/329 (10%), Positives = 85/329 (25%), Gaps = 56/329 (17%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD----------CLSP 271
           H   +  +  +   E  ++ +  +   +++++      A L   +             SP
Sbjct: 61  HTSVVCCVKFSNDGE--YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINS 331
               +   + + P G  L +                     +     +    +       
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 332 II-------------------------------FLPWENPCFATGGSDHAVVLWSERDAE 360
           +                                  P +    A G  D AV +W      
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 361 DSWKPKALHRNL--HSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKC 418
              +  + + +   H  +V  V   +  Q V+S   D+ +  ++          +  +  
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 419 MSVLPNPCDFNLF----------MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQS 468
              +      +             + +G+  R +  +D +     +      + S  S +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQGHRNSVISVA 357

Query: 469 ALINQSWSPDGLYITSGSADPVIHLFDIR 497
                S  P+     +GS D    ++  +
Sbjct: 358 VANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 43/324 (13%), Positives = 100/324 (30%), Gaps = 27/324 (8%)

Query: 228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN 287
            L L+  +    +    +    L+           L  +      H      + +   G 
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKS----LDHTSVVCCVKFSNDGE 75

Query: 288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP----CFA 343
            L +       +    V  ++     A ++           +N+      +      CF+
Sbjct: 76  YLATG-----CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130

Query: 344 TGGSDHAV--VLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGF 401
             G   A        R  +   +   +    H   +  +        ++S   D+ +  +
Sbjct: 131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190

Query: 402 DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ 461
           D   G+      IE    +V  +P D     +  G+  R +R++D              +
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSLDRAVRVWDSETGFLVERLDSENE 248

Query: 462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANK----------PSQSIRAHQ 511
             +  + ++ +  ++ DG  + SGS D  + L++++ + NK             +   H+
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308

Query: 512 KRVFKAVWHYSHPLLISISSDLNI 535
             V       +   ++S S D  +
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGV 332

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 34/269 (12%), Positives = 73/269 (27%), Gaps = 31/269 (11%)

Query: 290 FSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH 349
                    +    + N         V       H   ++  + F   +    ATG  + 
Sbjct: 28  VPDALKKQTNDYYILYNP-ALPREIDVELHKSLDH-TSVVCCVKFSN-DGEYLATG-CNK 83

Query: 350 AVVLWSERDAE-------------DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK 396
              ++   D               D               +  V      + + +   D+
Sbjct: 84  TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 143

Query: 397 RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456
            I  +D    +     Q   + +  L      +  +  +G            +R  ++  
Sbjct: 144 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR---------TVRIWDLRT 194

Query: 457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR-----YSANKPSQSIRAHQ 511
                  S             DG YI +GS D  + ++D          +  ++S   H+
Sbjct: 195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 254

Query: 512 KRVFKAVWHYSHPLLISISSDLNIGLHKI 540
             V+  V+      ++S S D ++ L  +
Sbjct: 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 39/317 (12%), Positives = 86/317 (27%), Gaps = 37/317 (11%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281
           H  K+ ++     + +L V+++ DG + +W   +     ++        P    W    A
Sbjct: 54  HLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAI--------PLRSSWVMTCA 104

Query: 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC 341
           + P GN +                  +       +   +    V   +            
Sbjct: 105 YAPSGNYVACGGL-------------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151

Query: 342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGF 401
                   +    +    +     +      H+  VM ++     ++ +S   D     +
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211

Query: 402 DAGVGRADFK---HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG 458
           D   G        H+ +   +   PN          TG+          RL         
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNG-----NAFATGSDDAT-----CRLFDLRADQEL 261

Query: 459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAV 518
                      + + S+S  G  + +G  D   +++D        +  +  H  RV    
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL--KADRAGVLAGHDNRVSCLG 319

Query: 519 WHYSHPLLISISSDLNI 535
                  + + S D  +
Sbjct: 320 VTDDGMAVATGSWDSFL 336

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 18/159 (11%), Positives = 47/159 (29%), Gaps = 12/159 (7%)

Query: 337 WENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK 396
            +   F +G  D +  LW  R+              H S +  +          +   D 
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDA 248

Query: 397 RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA 456
               FD    +    +  ++    +       +  ++  G       ++D   +      
Sbjct: 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL-KADRAGV 307

Query: 457 FGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD 495
                  +   + +     + DG+ + +GS D  + +++
Sbjct: 308 L------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 33/268 (12%), Positives = 72/268 (26%), Gaps = 22/268 (8%)

Query: 273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSI 332
           H      + W      L SA    S D ++ + +   T        +   P     + + 
Sbjct: 54  HLAKIYAMHWGTDSRLLVSA----SQDGKLIIWDSYTTN------KVHAIPLRSSWVMTC 103

Query: 333 IFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSA 392
            + P  N           +          + +         +     ++  +        
Sbjct: 104 AYAPSGNYVA-----CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158

Query: 393 GADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452
            +          +               V+      +  +  +G      +L+D+R    
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM- 217

Query: 453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK 512
                  +Q  +  +S +    + P+G    +GS D    LFD+R      + S      
Sbjct: 218 ------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271

Query: 513 RVFKAVWHYSHPLLISISSDLNIGLHKI 540
            +    +  S  LL++   D N  +   
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 31/329 (9%), Positives = 86/329 (26%), Gaps = 34/329 (10%)

Query: 213 HTSNHVSSL-HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSP 271
             +  +++L H   + +++++    +   T    G +++W +   G+ + +         
Sbjct: 40  RHARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD---CL 94

Query: 272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINS 331
               +       P G +L                    +                 + +S
Sbjct: 95  NRDNYIRSCKLLPDGCTLIVGG--------------EASTLSIWDLAAPTPRIKAELTSS 140

Query: 332 IIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLS 391
                       +          +    +   +        H+     +        + +
Sbjct: 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200

Query: 392 AGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ 451
            G D  +  +D   GR   +H   S+  S+   P    L +    +    L +      Q
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260

Query: 452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ 511
             +H                   ++  G +  S   D +++ +   Y         +   
Sbjct: 261 LHLHESCVLS-----------LKFAYCGKWFVSTGKDNLLNAWRTPY--GASIFQSK-ES 306

Query: 512 KRVFKAVWHYSHPLLISISSDLNIGLHKI 540
             V           +++ S D    ++++
Sbjct: 307 SSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 14/97 (14%)

Query: 211 HCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS 270
                 +   LH+  + SL       + FV++  D ++  W+      GAS+  +     
Sbjct: 253 VNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP---YGASIFQS----- 303

Query: 271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL 307
            K                + +     SGD + +V  +
Sbjct: 304 -KESSSVLSCDISVDDKYIVTG----SGDKKATVYEV 335

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 2e-08
 Identities = 38/317 (11%), Positives = 83/317 (26%), Gaps = 17/317 (5%)

Query: 228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN 287
            LS +P    +         +R         G S +      +         + + P   
Sbjct: 22  HLSYDPTTNAIAYPCGKSAFVRCLDD-----GDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 288 SLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP-WENPCFATGG 346
           S +     +SG   +     +K      V    +   + G I+ I +       C    G
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 347 SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG 406
            D+  V  S        +     + +++  +     M+   +                  
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196

Query: 407 RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES 466
                H+  S    V  +P      +                          + ++  E 
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKSGEFLKYIEDDQEP 250

Query: 467 QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-- 524
               I      D     +  AD  I ++D+    +K  Q     ++++            
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVWDVT--TSKCVQKWTLDKQQLGNQQVGVVATGN 308

Query: 525 -LLISISSDLNIGLHKI 540
             +IS+S D  +  +++
Sbjct: 309 GRIISLSLDGTLNFYEL 325

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 25/308 (8%), Positives = 69/308 (22%), Gaps = 41/308 (13%)

Query: 229 LSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNS 288
            +L     +  + +     + +  + S     ++  +        +  P      P   +
Sbjct: 2   PALKA-GHEYMIVTNYPNNLHVVDVASD----TVYKS---CVMPDKFGPGTAMMAPDNRT 53

Query: 289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD 348
            +     ++    I  ++L+  K             V   + S    P          + 
Sbjct: 54  AY---VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNP 109

Query: 349 HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRA 408
              +       +          +   +  +    M ++  ++ A  D  +          
Sbjct: 110 TQRLND-HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP----- 163

Query: 409 DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQL----RLYDIRLRQTEIHAFGWKQESS 464
                             D     V+TG     L               ++ +  +    
Sbjct: 164 ------------------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 205

Query: 465 ESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP 524
           E         +  D     +          D++ +    +Q      +  F  +     P
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLK-TGKTHTQEFADLTELYFTGLRSPKDP 264

Query: 525 LLISISSD 532
             I    +
Sbjct: 265 NQIYGVLN 272

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 28/286 (9%), Positives = 78/286 (27%), Gaps = 12/286 (4%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281
            K    +  + P N   +V +   G I    L +  +      ++        R     A
Sbjct: 38  DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE--VGRSMYSFA 95

Query: 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFL---PWE 338
             P G  +++        +   V+   + +  +    L+ KP     +   ++L     +
Sbjct: 96  ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155

Query: 339 NPCFATGGSDHAVVLWS---ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD 395
              +  G   + + + +             +  +              + +  +L   A 
Sbjct: 156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215

Query: 396 KRIIGFDAGVGRADFKHQI---ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT 452
            +    D       + +     ++             L+     +P    ++Y +  R  
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA 275

Query: 453 EIHAFGWKQESSESQSALINQ-SWSPDGLYITSGSADPVIHLFDIR 497
           +      K   + +        ++   G  +  G     + +F+  
Sbjct: 276 KYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 28/327 (8%), Positives = 90/327 (27%), Gaps = 29/327 (8%)

Query: 217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRW 276
            +    K  +  + + P ++ L + ++ DG + +++   +     LL +      +++  
Sbjct: 5   QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-----RYKHP 58

Query: 277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP 336
                +    +                +               ++       I       
Sbjct: 59  LLCCNFIDNTDLQI----YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK 114

Query: 337 WENPCFATGGSDHAVVLWSERDAEDSWKP-KALHRNLHSSAVMGVAGMQQKQIVLSAGAD 395
                +     D  + +   R+  D     K L+ N                 ++    +
Sbjct: 115 LIAASW-----DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169

Query: 396 KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDF--NLFMVQTGTPGRQLRLYDIR----- 448
            ++  F   +   D     ES     + +              +   ++ +         
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD 229

Query: 449 ---LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQ 505
               ++          + +     + +  +SP   ++ +  +D +I  ++++ +  K   
Sbjct: 230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ-TRKKIKN 288

Query: 506 SIRAHQKRVFKAVWHYSHPLLISISSD 532
             + ++  V       S  +L   +SD
Sbjct: 289 FAKFNEDSV--VKIACSDNILCLATSD 313

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 39/347 (11%), Positives = 96/347 (27%), Gaps = 48/347 (13%)

Query: 206 SPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLST 265
           SP  +  H  + ++ L                  V+ + D  +++W   +     +L+  
Sbjct: 8   SPKVLKGHDDHVITCLQ-----------FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH 56

Query: 266 TD-----CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLD 320
           T       +                 N+              +V  ++  + R      D
Sbjct: 57  TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD 116

Query: 321 DKPHVK------------GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL 368
               V             G + ++  + ++     +G  D  V +W         + +  
Sbjct: 117 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW-------DPETETC 169

Query: 369 HRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDF 428
              L        +       V+S   D  I  +D                   L +  + 
Sbjct: 170 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV----ETGNCIHTLTGHQSLTSGMEL 225

Query: 429 NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSAD 488
              ++ +G     ++++DI+  Q      G  +  S             +  ++ + S D
Sbjct: 226 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS------AVTCLQFNKNFVITSSDD 279

Query: 489 PVIHLFDIR---YSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSD 532
             + L+D++   +  N  +         V++     +  +    S +
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 48/334 (14%), Positives = 101/334 (30%), Gaps = 58/334 (17%)

Query: 209 TIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDC 268
            IHC +         + +  L     ++Q  V+   D  I++W   +      L   T  
Sbjct: 7   RIHCRSE------TSKGVYCLQ---YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS 57

Query: 269 LSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGI 328
           +          I                                   V   +    +   
Sbjct: 58  VLCLQYDERVIITGSSDSTVRVW-----------------------DVNTGEMLNTLIHH 94

Query: 329 INSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQI 388
             +++ L + N    T   D ++ +W      D    + L  +  +  V+        + 
Sbjct: 95  CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV----DFDDKY 150

Query: 389 VLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448
           ++SA  D+ I  ++       F   +      +      +   +V +G+    +RL+DI 
Sbjct: 151 IVSASGDRTIKVWNTSTCE--FVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIE 206

Query: 449 LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR-------YSAN 501
                    G ++         + +    D   I SG+ D  I ++D+         +  
Sbjct: 207 CGACLRVLEGHEE---------LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 257

Query: 502 KPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI 535
              +++  H  RVF+  +      ++S S D  I
Sbjct: 258 LCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTI 289

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 14/123 (11%)

Query: 232 NPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFS 291
               ++L V+ + D  IRLW ++             CL                   + S
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIE----------CGACLRVLEGHEELVRCIRFDNKRIVS 233

Query: 292 AHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV 351
                  D +I V +L                 +      +  L ++     +   D  +
Sbjct: 234 GAY----DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTI 289

Query: 352 VLW 354
           ++W
Sbjct: 290 LIW 292

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 9/62 (14%), Positives = 24/62 (38%)

Query: 474 SWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL 533
           +W+ D   I     +  +H+++   +       ++ H  +V    W      +++  +D 
Sbjct: 14  AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 73

Query: 534 NI 535
           N 
Sbjct: 74  NA 75

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.2 bits (110), Expect = 3e-06
 Identities = 33/327 (10%), Positives = 76/327 (23%), Gaps = 29/327 (8%)

Query: 220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED 279
           S     +   + N  +         +  + +++    G+    +        +H      
Sbjct: 4   SFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKS--GNKWVQVHELK----EHNGQVTG 56

Query: 280 IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWEN 339
           + W P  N + +       D    V  L     +  +  L                   N
Sbjct: 57  VDWAPDSNRIVTC----GTDRNAYVWTLKGRTWKPTLVILRINRAA------RCVRWAPN 106

Query: 340 PCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRII 399
                 GS   V+     + E+ W      +    S V+ +       ++ +   D +  
Sbjct: 107 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166

Query: 400 GFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR---------LR 450
            F A +   + +         +      F          G        R         + 
Sbjct: 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 226

Query: 451 QTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH 510
             +          +     L+  ++  +   + +G  D    LF   Y +     S    
Sbjct: 227 LADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFT--YDSAAGKLSFGGR 283

Query: 511 QKRVFKAVWHYSHPLLISISSDLNIGL 537
                ++            + D     
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASS 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 41/310 (13%), Positives = 81/310 (26%), Gaps = 26/310 (8%)

Query: 227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG 286
             L   P  +++   +     +    + S                +H          P G
Sbjct: 21  VVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIY--------TEHSHQTTVAKTSPSG 70

Query: 287 NSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG 346
               S          + + +  +T      T     P   G +  I +        A G 
Sbjct: 71  YYCASG----DVHGNVRIWDTTQTTHILKTTI----PVFSGPVKDISWDSESKRIAAVGE 122

Query: 347 SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVG 406
                      D   S           +S     +   +              G      
Sbjct: 123 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK 182

Query: 407 RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSES 466
               +H      +   P+   F             + LY+               ++   
Sbjct: 183 STFGEHTKFVHSVRYNPDGSLFASTGGD-----GTIVLYNGVDGTKTGVFEDDSLKNVAH 237

Query: 467 QSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAV-WHYSHPL 525
             ++   +WSPDG  I S SAD  I ++++     K  ++I    +   + +   ++   
Sbjct: 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVA--TLKVEKTIPVGTRIEDQQLGIIWTKQA 295

Query: 526 LISISSDLNI 535
           L+SIS++  I
Sbjct: 296 LVSISANGFI 305

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.2 bits (115), Expect = 5e-07
 Identities = 39/314 (12%), Positives = 90/314 (28%), Gaps = 32/314 (10%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281
           H + + +LS +  + +   ++  +G I  W + +         +       H      I 
Sbjct: 11  HNKAITALSSSA-DGKTLFSADAEGHINSWDISTG-------ISNRVFPDVHATMITGIK 62

Query: 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC 341
              +G+         S D  + V+    +   +     +            + +  +   
Sbjct: 63  TTSKGD-----LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS----QPLGLAVSADGDI 113

Query: 342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGF 401
                  H  +    +  E      +    L +       G Q  ++ +   +   +   
Sbjct: 114 AVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV 173

Query: 402 DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQ 461
              V  A+      S   + L         +  +     +L   +     T   A     
Sbjct: 174 KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS-- 231

Query: 462 ESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY 521
                        WSPD + + +GS D  + ++++   ++ P     AH      +V   
Sbjct: 232 -------------WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 278

Query: 522 SHPLLISISSDLNI 535
           +   ++S   D NI
Sbjct: 279 NETTIVSAGQDSNI 292

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 5/88 (5%)

Query: 268 CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKG 327
                   +          +         S D+ + V N+NK      +       H   
Sbjct: 214 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK---GAHAMS 270

Query: 328 IINSIIFLPWENPCFATGGSDHAVVLWS 355
            +NS+I+L        + G D  +  W+
Sbjct: 271 SVNSVIWLN--ETTIVSAGQDSNIKFWN 296

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 5e-07
 Identities = 32/318 (10%), Positives = 86/318 (27%), Gaps = 35/318 (11%)

Query: 210 IHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL 269
            + H  +     H   L+++  +     L  T++  G +  +++        ++     L
Sbjct: 53  SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL 112

Query: 270 --SPKHRRWPEDIAWHPQGNSLFSAHTADSG-DSQISVLNLNKTKGRACVTFLDDKPHVK 326
             S   +     + W    + L S     +       +   +     +    L+  P ++
Sbjct: 113 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 172

Query: 327 ------------GIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH-RNLH 373
                           S+          ATG ++  V +         +  ++ H    +
Sbjct: 173 LQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN 230

Query: 374 SSAVMGVAGMQQKQIVLSAGADKR--------------IIGFDAGVGRADFKHQIESKCM 419
           S+++  V    Q  ++  A                   I         +       +   
Sbjct: 231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 290

Query: 420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDG 479
            V+    + +   + +     +LR +D++ ++  I          + +      +    G
Sbjct: 291 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTL--NMHCDDIEIEEDILAVDEHG 347

Query: 480 LYITSGSADPVIHLFDIR 497
             +       V  L    
Sbjct: 348 DSLAEPGVFDVKFLKKGW 365

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 7e-07
 Identities = 30/346 (8%), Positives = 90/346 (26%), Gaps = 49/346 (14%)

Query: 214 TSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK- 272
            + +    H   + S+S         V+ + DG +++W  +   +      +      K 
Sbjct: 5   ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 273 ---HRRWPEDIAW-HPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV--- 325
              H    + I     +   + +     S    +    + +      V F          
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATT----SFSGDLLFYRITREDETKKVIFEKLDLLDSDM 117

Query: 326 -KGIINSIIFLPWENPC----FATGGSDHAVVLWSERDAEDSWKPKALHRN--------- 371
            K    ++ +    +                 +W      D      L+ +         
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 372 ----LHSSAVMGVAGMQQKQIVLSAGADKRI----IGFDAGVGRADFKHQIESKCMSVLP 423
                 S     V  + ++ ++ +   +  +    +     +   + +H + +   S+  
Sbjct: 178 ESPMTPSQFATSVD-ISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236

Query: 424 NPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALI---------NQS 474
                   ++             +   +           +  SQ++L          + S
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 475 WSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520
           ++  G  + S   D  +  +D++    +   ++  H   +      
Sbjct: 297 FNDSGETLCSAGWDGKLRFWDVK--TKERITTLNMHCDDIEIEEDI 340

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 9e-06
 Identities = 17/194 (8%), Positives = 41/194 (21%), Gaps = 15/194 (7%)

Query: 236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA 295
               +  A    + +   +      ++              P      P G   +     
Sbjct: 1   RDYILAPARPDKLVVIDTEKM----AVDKVIT--IADAGPTPMVPMVAPGGRIAY---AT 51

Query: 296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS 355
            +    +  ++L   +    +     +  VK  +      P               +   
Sbjct: 52  VNKSESLVKIDLVTGETLGRIDLSTPEERVKS-LFGAALSPDGKTLAIYESPVRLELTHF 110

Query: 356 ERDAEDSWKP-----KALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF 410
           E                         +  +A  +    +   G D  ++  +AG    D 
Sbjct: 111 EVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDK 170

Query: 411 KHQIESKCMSVLPN 424
             Q         P+
Sbjct: 171 PIQSWEAETYAQPD 184

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 25/281 (8%), Positives = 60/281 (21%), Gaps = 18/281 (6%)

Query: 227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG 286
               + P     + T      +    L +   G +L         +  +     A  P G
Sbjct: 37  MVPMVAPGGRIAYATVNKSESLVKIDLVT---GETLGRIDLSTPEERVKSLFGAALSPDG 93

Query: 287 NSLFSAHTADS-----GDSQISVLNLNKTKGRACVTFLDDKPHVKGII----NSIIFLPW 337
            +L    +         + Q + + L   +  +     +    +  +      S ++   
Sbjct: 94  KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG 153

Query: 338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKR 397
            +       +   V     +  E     +     + +                       
Sbjct: 154 RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD 213

Query: 398 IIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF 457
              +  G+   D +     +         D   F         + R +            
Sbjct: 214 PTAYRTGLLTMDLETG---EMAMREVRIMDVFYFST--AVNPAKTRAFGAYNVLESFDLE 268

Query: 458 GWKQESSESQSALINQ-SWSPDGLYITSGSADPVIHLFDIR 497
                            + S DG  +  G A   +  +D  
Sbjct: 269 KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 36/320 (11%), Positives = 79/320 (24%), Gaps = 46/320 (14%)

Query: 222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA 281
           H + + +L++NP      ++ + DG I  W   S                 H      + 
Sbjct: 12  HNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD-------------HSNLIVSLD 53

Query: 282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC 341
                                           + +++ D         +     P     
Sbjct: 54  NSKAQEY-------------------------SSISWDDTLKVNGITKHEFGSQPKVASA 88

Query: 342 FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGF 401
              G +            +           L+S             + L  G   ++   
Sbjct: 89  NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 148

Query: 402 DAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRL-RQTEIHAFGWK 460
                  D K  + +K   +  +P +  +             L    +            
Sbjct: 149 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI 208

Query: 461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH 520
              S   +         +   + +GS D  I ++ ++    K  +++ AH+  V   +W 
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK-RPMKIIKALNAHKDGVNNLLWE 267

Query: 521 YSHPLLISISSDLNIGLHKI 540
                L+S  +D  I    +
Sbjct: 268 TPS-TLVSSGADACIKRWNV 286

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 38/377 (10%), Positives = 97/377 (25%), Gaps = 78/377 (20%)

Query: 208 ATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD 267
            T+  H ++ ++ L              +   +T A D +IR++   ++     L     
Sbjct: 6   TTLRGHMTSVITCLQ-----------FEDNYVITGADDKMIRVYDSINKKFLLQL----- 49

Query: 268 CLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKG 327
                H      + +   G  L S  T            +     +        + H   
Sbjct: 50  ---SGHDGGVWALKYAH-GGILVSGSTDR---------TVRVWDIKKGCCTHVFEGHNST 96

Query: 328 IINSIIFLPWENPCFATGGSDHAVVLWSERDAE------------------DSWKPKALH 369
           +    I          TG  D+ + +W                        +        
Sbjct: 97  VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

Query: 370 RNLHSSAVM--------GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSV 421
              H ++V          V+G     +++   A  + +   +G     +    + +    
Sbjct: 157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216

Query: 422 LPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ-------- 473
           +    D  + +           L         +        S+ +  ++           
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276

Query: 474 ------------SWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY 521
                       ++      + SGS +   +++++R S      +I     +++   +  
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR-SGKLVHANILKDADQIWSVNFKG 334

Query: 522 SHPLLISISSDLNIGLH 538
              L+ ++  D    L 
Sbjct: 335 KT-LVAAVEKDGQSFLE 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 19/168 (11%), Positives = 38/168 (22%), Gaps = 18/168 (10%)

Query: 336 PWENPCFATGGSDHAVVLWSERDAEDSWKP--KALHRNLHSSAVMGVAGMQQKQIVLSA- 392
             ++                      S++   K     L   +      + +     +  
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 246

Query: 393 ----GADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR 448
                  KR    +   G       +ES  +              Q       L  YD++
Sbjct: 247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK 306

Query: 449 LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI 496
            R+                + L +   S D   +     D  I+ F +
Sbjct: 307 TRKVTEVK-----------NNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 22/304 (7%), Positives = 57/304 (18%), Gaps = 21/304 (6%)

Query: 230 SLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSL 289
             +P++  L    +  G   +  +          S T  L          +         
Sbjct: 9   DFSPLDGDLIAFVS-RGQAFIQDV----------SGTYVLKVPEPLRIRYVRRGGDTKVA 57

Query: 290 FSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH 349
           F           + + +           F ++  +V  +                     
Sbjct: 58  FIH--GTREGDFLGIYDYR---TGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV 112

Query: 350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRAD 409
            +        E S +       +  ++     G   K         + I  +D    +  
Sbjct: 113 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 172

Query: 410 FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSA 469
                 S   +   +    NL+     +        D  +                   +
Sbjct: 173 AATTENSHDYAPAFDADSKNLY---YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 229

Query: 470 LINQSWSPDGLYITSGSA--DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLI 527
                  P  +   +G    + +              + I   +  +             
Sbjct: 230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 289

Query: 528 SISS 531
               
Sbjct: 290 YYQG 293

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 22/210 (10%), Positives = 54/210 (25%), Gaps = 20/210 (9%)

Query: 275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIF 334
            + E++A  P G    +    +    +I  +  +  +          +  V G     + 
Sbjct: 28  TFLENLASAPDGTIFVT----NHEVGEIVSITPDGNQ----QIHATVEGKVSG-----LA 74

Query: 335 LPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA 394
                   ATG +  ++ + S   ++ + +      +      +      Q     S   
Sbjct: 75  FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRG 134

Query: 395 DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI 454
              +I      G    +H        +L      ++F    G       LY     +  +
Sbjct: 135 AIWLIDVVQPSGSIWLEH-------PMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL 187

Query: 455 HAFGWKQESSESQSALINQSWSPDGLYITS 484
                       +  +  +  + D      
Sbjct: 188 LRIPVDSTDKPGEPEIFVEQTNIDDFAFDV 217

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 9/78 (11%)

Query: 235 NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT 294
            + +++ S     I +W L   G   +L    D          + +   P    L+    
Sbjct: 3   KQTVYIASPESQQIHVWNLNHEG-ALTLTQVVD-----VPGQVQPMVVSPDKRYLYV--- 53

Query: 295 ADSGDSQISVLNLNKTKG 312
               + ++    +    G
Sbjct: 54  GVRPEFRVLAYRIAPDDG 71

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 1/101 (0%)

Query: 275 RWPEDIAWHPQGNSLFSAHTADSGD-SQISVLNLNKTKGRACVTFLDDKPHVKGIINSII 333
              E   +   G+    A   +        +L ++   G+  V    +     GI     
Sbjct: 18  PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQ 77

Query: 334 FLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHS 374
                N  F        +V+ ++   E+  K  +  R +  
Sbjct: 78  CDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQG 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	540
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.74
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.62
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.41
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.35
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.34
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.34
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.24
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.22
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.21
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.2
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.2
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.16
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.14
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.12
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.11
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.08
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.01
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.99
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.94
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.74
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.68
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.5
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.3
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.2
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.19
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.98
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.76
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.55
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.48
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.47
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.32
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.31
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.28
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.23
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.21
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.19
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.01
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.94
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.87
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.84
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.83
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.81
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	96.22
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.8
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.47
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.36
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.23
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.13
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.12
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.01
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.36
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.57
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.83
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.21
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.14
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	89.94
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	86.87

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-43  Score=335.01  Aligned_cols=287  Identities=12%  Similarity=0.199  Sum_probs=246.9

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      +|...|+||+|+|+ +++|++|+ ||.|+|||+........+....   ..+|.+.|.+++|+|+|++|+++    +.|+
T Consensus        49 ~H~~~V~~v~fs~~-g~~latg~-dg~V~iWd~~~~~~~~~~~~~~---~~~h~~~I~~v~~s~dg~~l~s~----~~dg  119 (337)
T d1gxra_          49 NHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLD---CLNRDNYIRSCKLLPDGCTLIVG----GEAS  119 (337)
T ss_dssp             CCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEE---CSCTTSBEEEEEECTTSSEEEEE----ESSS
T ss_pred             CCCCcEEEEEECCC-CCEEEEEE-CCEEEEEEccCCcccceeEEee---ecCCCCcEEEEEEcCCCCEEEEe----eccc
Confidence            79999999999995 99999997 8999999998765443332111   14789999999999999999999    9999


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                      .|++||+..... .....+..   |...+.+++|+| ++.++++++.|+.|++||+.+++.     ......|...|.++
T Consensus       120 ~i~iwd~~~~~~-~~~~~~~~---~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~-----~~~~~~~~~~v~~l  189 (337)
T d1gxra_         120 TLSIWDLAAPTP-RIKAELTS---SAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTL-----VRQFQGHTDGASCI  189 (337)
T ss_dssp             EEEEEECCCC---EEEEEEEC---SSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-----EEEECCCSSCEEEE
T ss_pred             cccccccccccc-cccccccc---cccccccccccc-cccccccccccccccccccccccc-----cccccccccccccc
Confidence            999999986532 33444443   567899999999 999999999999999999998764     22335688999999


Q ss_pred             EeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc
Q 009203          381 AGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK  460 (540)
Q Consensus       381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~  460 (540)
                      +|++++..+++++.|+.+++||+++++.+..+.....+.++.|+|.+   .++++|+.|+.+++||+++.....      
T Consensus       190 ~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~------  260 (337)
T d1gxra_         190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG---EWLAVGMESSNVEVLHVNKPDKYQ------  260 (337)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTS---SEEEEEETTSCEEEEETTSSCEEE------
T ss_pred             cccccccccccccccccccccccccceeecccccccceEEEEEcccc---cccceecccccccccccccccccc------
Confidence            99999999999999999999999999998888888999999999987   689999999999999999776432      


Q ss_pred             cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          461 QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       461 ~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                        ...|...|++++|+|+|++|++|+.||.|++||+.+  ++.+..+. |.+.|++++|+|++++|++|+.||+|+||||
T Consensus       261 --~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~--~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         261 --LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--GASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             --ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             --ccccccccceEEECCCCCEEEEEeCCCeEEEEECCC--CCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence              246888999999999999999999999999999997  56665554 7789999999999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.7e-42  Score=322.84  Aligned_cols=289  Identities=16%  Similarity=0.264  Sum_probs=251.1

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      ++|.||+++|++|+|+|+ +.+|+||+.||+|+|||+.+++...++        .+|...|.+++|+|++.+++++    
T Consensus        11 ~~L~GH~~~I~~l~~sp~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~--------~~h~~~V~~~~~~~~~~~~~~~----   77 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTL--------KGHTDSVQDISFDHSGKLLASC----   77 (317)
T ss_dssp             CEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEE--------CCCSSCEEEEEECTTSSEEEEE----
T ss_pred             EEEcCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCEEEEE--------eCCCCcEEEEeeeccccccccc----
Confidence            457899999999999996 899999999999999999998877776        5899999999999999999999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      ..++.+.+|+....   .....+..   |...+.++.|+| ++..+++++.|+.+++||++++..   ...+  .+|...
T Consensus        78 ~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~---~~~~--~~~~~~  145 (317)
T d1vyhc1          78 SADMTIKLWDFQGF---ECIRTMHG---HDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYC---VKTF--TGHREW  145 (317)
T ss_dssp             ETTSCCCEEETTSS---CEEECCCC---CSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE---EEEE--ECCSSC
T ss_pred             cccccccccccccc---cccccccc---ccccceeeeccC-CCceEEeeccCcceeEeeccccee---eeEE--ccCCCc
Confidence            89999999998865   33333333   567899999999 999999999999999999998874   2233  458899


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCC-----------------CceEEEEEcC
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDF-----------------NLFMVQTGTP  438 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~l~~~~~  438 (540)
                      +.+++|++++.+|++++.|+.|++|++.++....... ....+..+.++|...                 .+.++++++.
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (317)
T d1vyhc1         146 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR  225 (317)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred             ceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC
Confidence            9999999999999999999999999999988766543 345666777766531                 1247899999


Q ss_pred             CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEE
Q 009203          439 GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAV  518 (540)
Q Consensus       439 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~  518 (540)
                      |+.|++||+.++....       .+.+|...|.+++|+|++++|++|+.||.|+|||+.+  ++++..+.+|.+.|++++
T Consensus       226 d~~i~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~h~~~V~~~~  296 (317)
T d1vyhc1         226 DKTIKMWDVSTGMCLM-------TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN--KRCMKTLNAHEHFVTSLD  296 (317)
T ss_dssp             TSEEEEEETTTTEEEE-------EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT--SCCCEEEECCSSCEEEEE
T ss_pred             CCEEEEEECCCCcEEE-------EEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCC--CcEEEEEcCCCCCEEEEE
Confidence            9999999999877543       3457889999999999999999999999999999998  788999999999999999


Q ss_pred             EcCCCCEEEEEEcCCcEEEEe
Q 009203          519 WHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       519 ~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      |+|++++|++|+.||+|+|||
T Consensus       297 ~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         297 FHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECSSSSCEEEEETTSEEEEEC
T ss_pred             EcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-39  Score=308.97  Aligned_cols=289  Identities=19%  Similarity=0.249  Sum_probs=242.8

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      +|+||.+.|++|+|+|+ +.+||||+.||+|+|||+.+++.+..+        .+|..+|.+++|+|++.+|+++    +
T Consensus        50 tL~GH~~~I~~l~~s~~-~~~l~sgs~Dg~v~iWd~~~~~~~~~~--------~~~~~~v~~v~~~~~~~~l~~~----~  116 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAI--------PLRSSWVMTCAYAPSGNYVACG----G  116 (340)
T ss_dssp             EECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEE--------ECSCSCEEEEEECTTSSEEEEE----E
T ss_pred             EECCCCCCEEEEEECCC-CCEEEEEECCCceeeeecccceeEEEE--------ecccccEEeeEeeccceeeeee----c
Confidence            46799999999999996 999999999999999999998776666        4788999999999999999999    9


Q ss_pred             CCCeEEEEecCCCCCc-eeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          298 GDSQISVLNLNKTKGR-ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      .|+.+.+|+....... .....+.+   |..........  .+..++.+..|.....++......     ......+...
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  186 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAG---HTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQ-----TTTFTGHTGD  186 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECC---CSSCEEEEEEE--ETTEEEEEETTTEEEEEETTTTEE-----EEEEECCSSC
T ss_pred             ccceeecccccccccccccceeccc---ccccccccccc--cccccccccccccccccccccccc-----ccccccccee
Confidence            9999999998765322 22333443   44445444444  456788888899999998877642     2223447778


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      +....+.+.+.++++++.|+.|++||+++++.+.... +...+.+++|+|++   .+|++|+.||.|++||++.......
T Consensus       187 ~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~---~~l~s~s~d~~i~~~~~~~~~~~~~  263 (340)
T d1tbga_         187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG---NAFATGSDDATCRLFDLRADQELMT  263 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCC---CEEEEEeCCCeEEEEeecccccccc
Confidence            9999999999999999999999999999998877654 46778899999987   6999999999999999997765432


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNI  535 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v  535 (540)
                      .     ....+...|++++|+|+|++|++|+.||.|++||+.+  ++++..+.+|.++|++++|+|++++|+|||.||+|
T Consensus       264 ~-----~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         264 Y-----SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             E-----CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             c-----ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEE
Confidence            2     2345677899999999999999999999999999997  78899999999999999999999999999999999


Q ss_pred             EEEe
Q 009203          536 GLHK  539 (540)
Q Consensus       536 ~iw~  539 (540)
                      +|||
T Consensus       337 ~iWd  340 (340)
T d1tbga_         337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-40  Score=321.73  Aligned_cols=297  Identities=16%  Similarity=0.233  Sum_probs=236.2

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccc----------cCCCCCCCCceeEEEecCCCeE
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTD----------CLSPKHRRWPEDIAWHPQGNSL  289 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~----------~~~~~h~~~V~~~~~~~~~~~l  289 (540)
                      .+|++.|+||+|+|| |++||+|+ |++|+|||+.+++....+.....          ....+|...|++++|+|+|++|
T Consensus        59 ~~H~~~V~~l~fs~d-g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          59 LDHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             EECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCCcEEEEEECCC-CCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence            379999999999996 89999987 89999999998876555432211          1114688889999999999999


Q ss_pred             EEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee
Q 009203          290 FSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH  369 (540)
Q Consensus       290 ~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  369 (540)
                      ++|    +.||.|++||...+   ..+..+.+   |...|.+++|++ ++..+++++.++.+++||..+...     ...
T Consensus       137 ~s~----~~dg~v~i~~~~~~---~~~~~~~~---h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~-----~~~  200 (388)
T d1erja_         137 ATG----AEDRLIRIWDIENR---KIVMILQG---HEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQC-----SLT  200 (388)
T ss_dssp             EEE----ETTSCEEEEETTTT---EEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE-----EEE
T ss_pred             eec----cccccccccccccc---cccccccc---cccccccccccc-ccccccccccceeeeeeecccccc-----ccc
Confidence            999    99999999999876   44555554   677899999999 999999999999999999998753     111


Q ss_pred             cccCCcceeEEEe-ccCCCEEEEEeCCCeEEEEECCCCCeeeeec--------cCccEEEEeecCCCCCceEEEEEcCCC
Q 009203          370 RNLHSSAVMGVAG-MQQKQIVLSAGADKRIIGFDAGVGRADFKHQ--------IESKCMSVLPNPCDFNLFMVQTGTPGR  440 (540)
Q Consensus       370 ~~~~~~~v~~l~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~dg  440 (540)
                      .. +.....++.+ .+++.+|++++.||.|++||..++.......        +...+.++.|+|++   .+|++|+.||
T Consensus       201 ~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~d~  276 (388)
T d1erja_         201 LS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG---QSVVSGSLDR  276 (388)
T ss_dssp             EE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS---SEEEEEETTS
T ss_pred             cc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC---CEEEEEECCC
Confidence            12 3344445555 5588999999999999999999887755432        34578899999987   6999999999


Q ss_pred             eEEEEECCCCcceeeeec-----cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccccee
Q 009203          441 QLRLYDIRLRQTEIHAFG-----WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVF  515 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~  515 (540)
                      .|++||+.+.........     .......|...|++++|+|+|++|++|+.||.|++||+.+  ++++.++.+|.+.|+
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~--~~~~~~l~~H~~~V~  354 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS--GNPLLMLQGHRNSVI  354 (388)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEE
T ss_pred             cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCC--CcEEEEEeCCCCCEE
Confidence            999999987653221110     1123356788999999999999999999999999999998  788999999999999


Q ss_pred             EEEE------cCCCCEEEEEEcCCcEEEEeC
Q 009203          516 KAVW------HYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       516 ~l~~------s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++++      +|++.+|+||+.||+|+||++
T Consensus       355 ~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         355 SVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            9975      678999999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.9e-39  Score=303.51  Aligned_cols=290  Identities=16%  Similarity=0.140  Sum_probs=236.9

Q ss_pred             ccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD  299 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d  299 (540)
                      ..+.+.+.+++++|+ |..|+.++ ++.|.+|++.+......+        .+|.+.|++++|+|+|++|++|    +.|
T Consensus        14 ~~~r~~~~~~a~~~~-g~~l~~~~-~~~v~i~~~~~~~~~~~~--------~~H~~~v~~~~~sp~g~~latg----~~d   79 (311)
T d1nr0a1          14 RTARGTAVVLGNTPA-GDKIQYCN-GTSVYTVPVGSLTDTEIY--------TEHSHQTTVAKTSPSGYYCASG----DVH   79 (311)
T ss_dssp             CCCTTCCCCCEECTT-SSEEEEEE-TTEEEEEETTCSSCCEEE--------CCCSSCEEEEEECTTSSEEEEE----ETT
T ss_pred             CCCCCCeEEEEEcCC-CCEEEEEe-CCEEEEEECCCCceeEEE--------cCCCCCEEEEEEeCCCCeEecc----ccC
Confidence            345567788999996 88888876 567999999987766655        5899999999999999999999    999


Q ss_pred             CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccceeecccCCcce
Q 009203          300 SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      |.|++||+.++... ....+..   |.+.|.+++|+| ++.+|++++.  +..+++|++.+++..   ..+  .+|...|
T Consensus        80 g~i~iwd~~~~~~~-~~~~~~~---~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~---~~l--~~h~~~v  149 (311)
T d1nr0a1          80 GNVRIWDTTQTTHI-LKTTIPV---FSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSN---GNL--TGQARAM  149 (311)
T ss_dssp             SEEEEEESSSTTCC-EEEEEEC---SSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBC---BCC--CCCSSCE
T ss_pred             ceEeeeeeeccccc-ccccccc---ccCccccccccc-ccccccccccccccccccccccccccc---ccc--ccccccc
Confidence            99999999976432 2233443   567899999999 9999999876  456999999988752   222  5688999


Q ss_pred             eEEEeccCCCE-EEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          378 MGVAGMQQKQI-VLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       378 ~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                      ++++|+|++.+ |++|+.|+.|++||+++++....... ...+.++.++|++   .++++++.|+.|++||+.++.....
T Consensus       150 ~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~---~~l~~~~~d~~v~~~d~~~~~~~~~  226 (311)
T d1nr0a1         150 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG---SLFASTGGDGTIVLYNGVDGTKTGV  226 (311)
T ss_dssp             EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ccccccccceeeecccccccccccccccccccccccccccccccccccCccc---ccccccccccccccccccccccccc
Confidence            99999999885 78899999999999999887766543 5778899999987   6899999999999999998765443


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc---ceeEEEEcCCCCEEEEEEcC
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK---RVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~---~i~~l~~s~~~~~l~s~~~d  532 (540)
                      .........+|...|++++|+|+|++|++|+.||.|+|||+.+  ++++.++..|..   .+.++.|  ++.+|++++.|
T Consensus       227 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t--~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~d  302 (311)
T d1nr0a1         227 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT--LKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN  302 (311)
T ss_dssp             CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred             ccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC--CcEEEEEECCCCccceEEEEEe--cCCEEEEEECC
Confidence            3222334567999999999999999999999999999999997  778888776543   3445555  56679999999


Q ss_pred             CcEEEEeC
Q 009203          533 LNIGLHKI  540 (540)
Q Consensus       533 g~v~iw~l  540 (540)
                      |.|++||+
T Consensus       303 G~i~~wd~  310 (311)
T d1nr0a1         303 GFINFVNP  310 (311)
T ss_dssp             CCEEEEET
T ss_pred             CEEEEEeC
Confidence            99999995

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-39  Score=305.22  Aligned_cols=289  Identities=16%  Similarity=0.202  Sum_probs=226.9

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +++.||.+.|++|+|+|| +++|++|+.||+|++||+.+++....+.       .+|...|++++|+|+|.++++     
T Consensus         6 ~~~~GH~~~V~~l~~s~d-g~~l~s~s~Dg~v~vWd~~~~~~~~~~~-------~~h~~~v~~v~~~~~g~~~~~-----   72 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFP-------DVHATMITGIKTTSKGDLFTV-----   72 (299)
T ss_dssp             EEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEECSS-------CSCSSCEEEEEECTTSCEEEE-----
T ss_pred             eEcCCCCCCcEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEc-------CCCCCcEEEEEeeccceeecc-----
Confidence            567899999999999996 9999999999999999999877554432       478899999999999976655     


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|+.+++|+..............   .+...+.+++|+| ++.++++++ ++.+.+|+.....      ..   .....
T Consensus        73 ~~d~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~~~------~~---~~~~~  138 (299)
T d1nr0a2          73 SWDDHLKVVPAGGSGVDSSKAVAN---KLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGKLT------EV---PISYN  138 (299)
T ss_dssp             ETTTEEEEECSSSSSSCTTSCCEE---ECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTEEE------EE---ECSSC
T ss_pred             cceeeEEEeccCCccccccccccc---ccccccccccccc-ccccccccc-ccccccccccccc------cc---ccccc
Confidence            579999999987542111111111   1346689999999 888777665 5789999965321      11   13456


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee--eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF--KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      +.+++|+|++++|++++.||.|++||++++....  ...+...+.++.++|++   .++++++.|+.|++||+.+.....
T Consensus       139 ~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         139 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG---AFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS---SEEEEEETTSCEEEEEGGGTTEES
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccc
Confidence            7899999999999999999999999998776533  34556788999999987   689999999999999998765433


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc-ccceeEEEEcCCCCEEEEEEcCC
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH-QKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      .    ...+.+|...|++++|+|++++|++|+.||.|++||+.......+.....| ...|.++.| +++.+|++++.||
T Consensus       216 ~----~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~  290 (299)
T d1nr0a2         216 H----TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDS  290 (299)
T ss_dssp             C----CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTS
T ss_pred             c----cccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCC
Confidence            2    225567899999999999999999999999999999997533444444444 446666655 5678999999999


Q ss_pred             cEEEEeC
Q 009203          534 NIGLHKI  540 (540)
Q Consensus       534 ~v~iw~l  540 (540)
                      +|+||||
T Consensus       291 ~i~iWdl  297 (299)
T d1nr0a2         291 NIKFWNV  297 (299)
T ss_dssp             CEEEEEC
T ss_pred             EEEEEec
Confidence            9999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-38  Score=306.29  Aligned_cols=288  Identities=13%  Similarity=0.125  Sum_probs=225.1

Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCC--cceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGS--GASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      .++|+|++|+|| +.+||+|+.||.|+|||+.+++.  ...+        .+|.++|.+++|+|++++|+++    +.|+
T Consensus         7 ~~pIt~~~~s~d-g~~la~~~~~~~i~iw~~~~~~~~~~~~l--------~gH~~~V~~l~fsp~~~~l~s~----s~D~   73 (371)
T d1k8kc_           7 VEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHEL--------KEHNGQVTGVDWAPDSNRIVTC----GTDR   73 (371)
T ss_dssp             SSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEE--------ECCSSCEEEEEEETTTTEEEEE----ETTS
T ss_pred             CCCeEEEEECCC-CCEEEEEeCCCEEEEEECCCCCEEEEEEe--------cCCCCCEEEEEECCCCCEEEEE----ECCC
Confidence            478999999996 99999999999999999987652  2222        4899999999999999999999    9999


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEE
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l  380 (540)
                      .|++||+.++.. .....+.   .|...|.+++|+| +++.|++|+.|+.|++|++......... ......|...|.++
T Consensus        74 ~i~vWd~~~~~~-~~~~~~~---~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~-~~~~~~~~~~v~~v  147 (371)
T d1k8kc_          74 NAYVWTLKGRTW-KPTLVIL---RINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVC-KHIKKPIRSTVLSL  147 (371)
T ss_dssp             CEEEEEEETTEE-EEEEECC---CCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEE-EEECTTCCSCEEEE
T ss_pred             eEEEEeeccccc-ccccccc---ccccccccccccc-ccccceeecccCcceeeeeecccccccc-cccccccccccccc
Confidence            999999986522 2222233   2567899999999 9999999999999999999876542211 12235688999999


Q ss_pred             EeccCCCEEEEEeCCCeEEEEECCCCCe------------------eee-eccCccEEEEeecCCCCCceEEEEEcCCCe
Q 009203          381 AGMQQKQIVLSAGADKRIIGFDAGVGRA------------------DFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQ  441 (540)
Q Consensus       381 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  441 (540)
                      +|+|++.+|++|+.|+.|++||......                  +.. ......+.+++|+|++   .+|++++.|+.
T Consensus       148 ~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~s~~~d~~  224 (371)
T d1k8kc_         148 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG---SRVAWVSHDST  224 (371)
T ss_dssp             EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS---SEEEEEETTTE
T ss_pred             cccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc---ccccccccCCc
Confidence            9999999999999999999999865331                  111 2334567899999987   68999999999


Q ss_pred             EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccc-----------------
Q 009203          442 LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPS-----------------  504 (540)
Q Consensus       442 v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~-----------------  504 (540)
                      |++||+.++....       .+..|..+|.+++|+|++.+|++|. |+.+++|..........                 
T Consensus       225 i~iwd~~~~~~~~-------~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (371)
T d1k8kc_         225 VCLADADKKMAVA-------TLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT  296 (371)
T ss_dssp             EEEEEGGGTTEEE-------EEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred             ceEEeeeccccee-------eeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCcccccccccc
Confidence            9999998876533       3456888999999999998888765 77777776543111100                 


Q ss_pred             ----------------------ccccccccceeEEEEcCCC----CEEEEEEcCCcEEEEeC
Q 009203          505 ----------------------QSIRAHQKRVFKAVWHYSH----PLLISISSDLNIGLHKI  540 (540)
Q Consensus       505 ----------------------~~~~~h~~~i~~l~~s~~~----~~l~s~~~dg~v~iw~l  540 (540)
                                            .....|.+.|+++++.+.+    ..|+|+|.||.|+|||+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         297 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             HHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             ceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence                                  0001388899999998755    36899999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-37  Score=294.48  Aligned_cols=278  Identities=15%  Similarity=0.180  Sum_probs=234.9

Q ss_pred             CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------hhcccc
Q 009203          153 PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------HVSSLH  222 (540)
Q Consensus       153 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------~~~~~h  222 (540)
                      .|...|.++++.|...                               .+++++ |+.|++|+..          ....+|
T Consensus        49 ~H~~~V~~v~fs~~g~-------------------------------~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h   96 (337)
T d1gxra_          49 NHGEVVCAVTISNPTR-------------------------------HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNR   96 (337)
T ss_dssp             CCSSCCCEEEECSSSS-------------------------------EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCT
T ss_pred             CCCCcEEEEEECCCCC-------------------------------EEEEEE-CCEEEEEEccCCcccceeEEeeecCC
Confidence            6889999999988743                               466665 7899999753          124689


Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      .+.|++|+|+|| +++|++|+.||.|++||+.........  ..    .+|...|.+++|+|++.+++++    +.++.|
T Consensus        97 ~~~I~~v~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~~~--~~----~~~~~~v~~~~~~~~~~~l~s~----~~d~~i  165 (337)
T d1gxra_          97 DNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPRIKA--EL----TSSAPACYALAISPDSKVCFSC----CSDGNI  165 (337)
T ss_dssp             TSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--EEEE--EE----ECSSSCEEEEEECTTSSEEEEE----ETTSCE
T ss_pred             CCcEEEEEEcCC-CCEEEEeeccccccccccccccccccc--cc----cccccccccccccccccccccc----cccccc
Confidence            999999999996 899999999999999998765432211  11    4788889999999999999999    999999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      .+|++.++   ........   |...|.+++|++ ++..+++|+.|+.|++||+++++.      +....|...|.+++|
T Consensus       166 ~~~~~~~~---~~~~~~~~---~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~------~~~~~~~~~i~~l~~  232 (337)
T d1gxra_         166 AVWDLHNQ---TLVRQFQG---HTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQ------LQQHDFTSQIFSLGY  232 (337)
T ss_dssp             EEEETTTT---EEEEEECC---CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE------EEEEECSSCEEEEEE
T ss_pred             cccccccc---cccccccc---cccccccccccc-ccccccccccccccccccccccee------ecccccccceEEEEE
Confidence            99999976   44555543   567899999999 999999999999999999998764      222348889999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE  462 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  462 (540)
                      +|++++|++++.|+.+++||++++.......+...+.++.|+|++   .+|++++.||.|++||+.+++....       
T Consensus       233 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g---~~l~s~s~Dg~i~iwd~~~~~~~~~-------  302 (337)
T d1gxra_         233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG---KWFVSTGKDNLLNAWRTPYGASIFQ-------  302 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTCCEEEE-------
T ss_pred             cccccccceeccccccccccccccccccccccccccceEEECCCC---CEEEEEeCCCeEEEEECCCCCEEEE-------
Confidence            999999999999999999999998887777778889999999987   6899999999999999998875432       


Q ss_pred             cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          463 SSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                       ..|...|++++|+|+|++|++|+.||.|+|||+-
T Consensus       303 -~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         303 -SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             -EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             -ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence             2467899999999999999999999999999973

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-35  Score=282.13  Aligned_cols=302  Identities=14%  Similarity=0.138  Sum_probs=227.8

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      .+++++.|++|++|+..     ..+.+|.++|++|+|+|+  .+|++|+.||+|++|+............      ..+.
T Consensus        25 ~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~~~~~~~~~~~------~~~~   96 (355)
T d1nexb2          25 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEG------HNST   96 (355)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT--TEEEEEETTCCEEEEETTTTEEEEEECC------CSSC
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC--CEEEEEeccccccccccccccccccccc------cccc
Confidence            57889999999999765     558999999999999984  4899999999999999988765443322      2333


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEee--------cCC---------CCcccceeEEEEeCC
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFL--------DDK---------PHVKGIINSIIFLPW  337 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~--------~~~---------~~~~~~v~~~~~~p~  337 (540)
                      ..+..+.+.+++.+++++    +.|+.|++||+.+..........        ...         ..|...+.  .+.+ 
T Consensus        97 ~~~~~~~~~~~~~~~~~~----~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-  169 (355)
T d1nexb2          97 VRCLDIVEYKNIKYIVTG----SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSG-  169 (355)
T ss_dssp             EEEEEEEEETTEEEEEEE----ETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEE-
T ss_pred             ccccccccccccceeeee----cCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--cccc-
Confidence            445667788999999999    99999999999865221100000        000         01122233  3344 


Q ss_pred             CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCc
Q 009203          338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IES  416 (540)
Q Consensus       338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~  416 (540)
                      ++++++++..|+.|++||+.+++.     .....++...+.++.|++++.++++++.|+.|++||++++..+.... +..
T Consensus       170 ~~~~~~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~  244 (355)
T d1nexb2         170 HGNIVVSGSYDNTLIVWDVAQMKC-----LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA  244 (355)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEE-----EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             ccceeeeecccceeeeeecccccc-----eeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccc
Confidence            678999999999999999998764     22234577889999999999999999999999999999998876644 345


Q ss_pred             cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEE-EEcCCCCEEEEEeCCCcEEEEe
Q 009203          417 KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQ-SWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       417 ~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      .+.++.+++     .+|++|+.||.|++||+++.....         ..|...+.++ .+++++.+|++| .||.|+|||
T Consensus       245 ~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd  309 (355)
T d1nexb2         245 LVGLLRLSD-----KFLVSAAADGSIRGWDANDYSRKF---------SYHHTNLSAITTFYVSDNILVSG-SENQFNIYN  309 (355)
T ss_dssp             CCCEEEECS-----SEEEEECTTSEEEEEETTTCCEEE---------EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred             ccccccccc-----ceeeeeecccccccccccccceec---------ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEE
Confidence            667788876     489999999999999999776433         2345555555 556777777766 589999999


Q ss_pred             ccCCCCcccc-cccccccceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          496 IRYSANKPSQ-SIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       496 ~~~~~~~~~~-~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      +++  ++++. .+.+|.+.|++++|+|+ .++++++.||.++||.
T Consensus       310 ~~t--g~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         310 LRS--GKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             TTT--CCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             CCC--CCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            998  66664 56789999999999987 4788899999876653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.3e-35  Score=274.17  Aligned_cols=280  Identities=17%  Similarity=0.246  Sum_probs=240.1

Q ss_pred             eecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccccC
Q 009203          150 QASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLHKR  224 (540)
Q Consensus       150 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h~~  224 (540)
                      .+.||...|+++++.|..+                               .+++++.|++|++|+..     ..+.+|.+
T Consensus        12 ~L~GH~~~I~~l~~sp~~~-------------------------------~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~   60 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFS-------------------------------VMVSASEDATIKVWDYETGDFERTLKGHTD   60 (317)
T ss_dssp             EEECCSSCEEEEEECSSSS-------------------------------EEEEEESSSCEEEEETTTCCCCEEECCCSS
T ss_pred             EEcCCCCCeEEEEEcCCCC-------------------------------EEEEEeCCCeEEEEECCCCCEEEEEeCCCC
Confidence            5679999999999998753                               57788999999999765     45889999


Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      .|++++|+|+ +.++++++.++.+.+|+.........+        .+|...+.++.|+++++.++++    +.|+.+++
T Consensus        61 ~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~----~~d~~~~~  127 (317)
T d1vyhc1          61 SVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIRTM--------HGHDHNVSSVSIMPNGDHIVSA----SRDKTIKM  127 (317)
T ss_dssp             CEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEECC--------CCCSSCEEEEEECSSSSEEEEE----ETTSEEEE
T ss_pred             cEEEEeeecc-ccccccccccccccccccccccccccc--------ccccccceeeeccCCCceEEee----ccCcceeE
Confidence            9999999995 999999999999999998876644333        5788899999999999999999    99999999


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  384 (540)
                      ||+.++   .....+..   |...+.+++|+| ++.+|++++.|+.|++|++.++..     ......|...+.++.|+|
T Consensus       128 ~~~~~~---~~~~~~~~---~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~  195 (317)
T d1vyhc1         128 WEVQTG---YCVKTFTG---HREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKEC-----KAELREHRHVVECISWAP  195 (317)
T ss_dssp             EETTTC---CEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE-----EEEECCCSSCEEEEEECC
T ss_pred             eecccc---eeeeEEcc---CCCcceeeeccc-CCCEEEEEeCCCeEEEEeecccee-----eEEEecCCCCceEEEEee
Confidence            999986   44555554   567799999999 999999999999999999998874     222345788888888876


Q ss_pred             C--------------------CCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEcCCCeEE
Q 009203          385 Q--------------------KQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGTPGRQLR  443 (540)
Q Consensus       385 ~--------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  443 (540)
                      +                    +.++++++.|+.|++||+++++++.... +...+.++.++|++   .+|++|+.||.|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~  272 (317)
T d1vyhc1         196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG---KFILSCADDKTLR  272 (317)
T ss_dssp             SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS---SCEEEEETTTEEE
T ss_pred             ccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCC---CEEEEEECCCeEE
Confidence            5                    3578999999999999999998877644 45778899999987   6899999999999


Q ss_pred             EEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          444 LYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       444 i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      +||+.+++...       .+.+|...|++++|+|++++|++|+.||.|+|||
T Consensus       273 iwd~~~~~~~~-------~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         273 VWDYKNKRCMK-------TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EECCTTSCCCE-------EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCcEEE-------EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999876533       4467899999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-34  Score=273.40  Aligned_cols=261  Identities=13%  Similarity=0.197  Sum_probs=206.9

Q ss_pred             CCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEE
Q 009203          207 PATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIA  281 (540)
Q Consensus       207 d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  281 (540)
                      +..+.+|+..     +++.+|.+.|++++|+|+ |++||+|+.||+|+|||+...........      .+|..+|.+++
T Consensus        37 ~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~~~~~~------~~~~~~v~~v~  109 (311)
T d1nr0a1          37 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTI------PVFSGPVKDIS  109 (311)
T ss_dssp             TTEEEEEETTCSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEE------ECSSSCEEEEE
T ss_pred             CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeecccccccccc------ccccCcccccc
Confidence            4567788654     567899999999999996 99999999999999999998765433211      47889999999


Q ss_pred             EecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCC-EEEEEecCCcEEEEecCCCC
Q 009203          282 WHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENP-CFATGGSDHAVVLWSERDAE  360 (540)
Q Consensus       282 ~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~  360 (540)
                      |+|++++|++++.  +.+..+++|++++++   ....+.+   |...|.+++|+| ++. .|++|+.|+.|++||+++++
T Consensus       110 ~s~d~~~l~~~~~--~~~~~~~v~~~~~~~---~~~~l~~---h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~  180 (311)
T d1nr0a1         110 WDSESKRIAAVGE--GRERFGHVFLFDTGT---SNGNLTG---QARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFK  180 (311)
T ss_dssp             ECTTSCEEEEEEC--CSSCSEEEEETTTCC---BCBCCCC---CSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBE
T ss_pred             ccccccccccccc--ccccccccccccccc---ccccccc---cccccccccccc-cceeeecccccccccccccccccc
Confidence            9999999998821  245679999999763   3444443   677899999999 665 58899999999999999876


Q ss_pred             CccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec--------cCccEEEEeecCCCCCceE
Q 009203          361 DSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ--------IESKCMSVLPNPCDFNLFM  432 (540)
Q Consensus       361 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  432 (540)
                      .     ......|...|+++.|+|+++++++++.|+.|++||+.++.......        +...+.++.|+|++   .+
T Consensus       181 ~-----~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~---~~  252 (311)
T d1nr0a1         181 F-----KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG---TK  252 (311)
T ss_dssp             E-----EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS---SE
T ss_pred             c-----ccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC---CE
Confidence            4     23335689999999999999999999999999999999887654432        34678899999987   69


Q ss_pred             EEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          433 VQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       433 l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      |++|+.||.|+|||+++++.... +.   ....+...+.++.|  ++.+|++++.||.|++||++
T Consensus       253 l~tgs~Dg~v~iwd~~t~~~~~~-l~---~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         253 IASASADKTIKIWNVATLKVEKT-IP---VGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEE-EE---CCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             EEEEeCCCeEEEEECCCCcEEEE-EE---CCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            99999999999999998875332 21   11122334555666  56689999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-35  Score=283.63  Aligned_cols=283  Identities=18%  Similarity=0.261  Sum_probs=223.2

Q ss_pred             CCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc----------------
Q 009203          153 PAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN----------------  216 (540)
Q Consensus       153 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~----------------  216 (540)
                      +|...|+++++.|...                               .+++++ |++|++|+..                
T Consensus        60 ~H~~~V~~l~fs~dg~-------------------------------~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          60 DHTSVVCCVKFSNDGE-------------------------------YLATGC-NKTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             ECSSCCCEEEECTTSS-------------------------------EEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred             CCCCcEEEEEECCCCC-------------------------------EEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence            6889999999988743                               355554 7788888542                


Q ss_pred             -------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeE
Q 009203          217 -------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSL  289 (540)
Q Consensus       217 -------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l  289 (540)
                             ....+|...|++|+|+|+ +++|++|+.||.|++|+...++.....        .+|...|.+++|++++..+
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~-~~~l~s~~~dg~v~i~~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~  178 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMIL--------QGHEQDIYSLDYFPSGDKL  178 (388)
T ss_dssp             -----------CCCCBEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEE--------CCCSSCEEEEEECTTSSEE
T ss_pred             cccccccccccCCCCCEEEEEECCC-CCcceeccccccccccccccccccccc--------ccccccccccccccccccc
Confidence                   113478889999999995 999999999999999999987765555        5899999999999999999


Q ss_pred             EEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccce--
Q 009203          290 FSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA--  367 (540)
Q Consensus       290 ~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--  367 (540)
                      +++    +.++.+++||..+.   ........    .....++.+.+.++.+|++|+.||.|++||+.++........  
T Consensus       179 ~~~----~~~~~i~~~d~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~  247 (388)
T d1erja_         179 VSG----SGDRTVRIWDLRTG---QCSLTLSI----EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN  247 (388)
T ss_dssp             EEE----ETTSEEEEEETTTT---EEEEEEEC----SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---
T ss_pred             ccc----ccceeeeeeecccc---cccccccc----ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccc
Confidence            999    99999999999875   33433332    344667777776899999999999999999998775322211  


Q ss_pred             eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee-------------eeccCccEEEEeecCCCCCceEEE
Q 009203          368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF-------------KHQIESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~  434 (540)
                      ....+|...|.+++|+|++++|++++.||.|++||++++....             ...+...+.++.|+|++   .+|+
T Consensus       248 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~  324 (388)
T d1erja_         248 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND---EYIL  324 (388)
T ss_dssp             ---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG---CEEE
T ss_pred             ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC---CEEE
Confidence            1124588999999999999999999999999999998754321             12345678899999987   7999


Q ss_pred             EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEE------cCCCCEEEEEeCCCcEEEEecc
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSW------SPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                      +|+.||.|++||+.+++...       .+.+|.+.|+++++      +|++.+|++|+.||.|+||+++
T Consensus       325 sg~~dg~i~vwd~~~~~~~~-------~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         325 SGSKDRGVLFWDKKSGNPLL-------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEETTSEEEEEETTTCCEEE-------EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEeCCCEEEEEECCCCcEEE-------EEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999999999887543       44679999999875      6789999999999999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-34  Score=275.75  Aligned_cols=281  Identities=16%  Similarity=0.152  Sum_probs=215.0

Q ss_pred             eEEecCCCCeEEEeccc-------hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203          200 LVRTSASPATIHCHTSN-------HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK  272 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-------~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  272 (540)
                      .+++++.|+.|++|+..       ..+.+|.++|++|+|+|+ +++|++|+.|++|+|||+.++.....+..      .+
T Consensus        21 ~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~-~~~l~s~s~D~~i~vWd~~~~~~~~~~~~------~~   93 (371)
T d1k8kc_          21 QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVI------LR   93 (371)
T ss_dssp             EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEEC------CC
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC-CCEEEEEECCCeEEEEeeccccccccccc------cc
Confidence            56778889999999753       447899999999999995 89999999999999999987654333221      47


Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVV  352 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  352 (540)
                      |...|.+++|+|+++.|+++    +.|+.|++|++.............  ..|.+.|.+++|+| ++.+|++|+.|++|+
T Consensus        94 ~~~~v~~i~~~p~~~~l~~~----s~d~~i~i~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          94 INRAARCVRWAPNEKKFAVG----SGSRVISICYFEQENDWWVCKHIK--KPIRSTVLSLDWHP-NSVLLAAGSCDFKCR  166 (371)
T ss_dssp             CSSCEEEEEECTTSSEEEEE----ETTSSEEEEEEETTTTEEEEEEEC--TTCCSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             ccccccccccccccccceee----cccCcceeeeeecccccccccccc--cccccccccccccc-cccceeccccCcEEE
Confidence            88899999999999999999    999999999998764433222222  23677899999999 999999999999999


Q ss_pred             EEecCCCCCccc-------------cceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccE
Q 009203          353 LWSERDAEDSWK-------------PKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKC  418 (540)
Q Consensus       353 iwd~~~~~~~~~-------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~  418 (540)
                      +||+........             ........|...|.+++|+|+|++|++++.|+.|++||+.++..+..... ...+
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  246 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL  246 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCE
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccc
Confidence            999876542111             11233356889999999999999999999999999999999888766443 4578


Q ss_pred             EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeec----------------------------------cccccC
Q 009203          419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFG----------------------------------WKQESS  464 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~----------------------------------~~~~~~  464 (540)
                      .++.|+|++   .+|++|+ |+.+++|+............                                  ......
T Consensus       247 ~s~~fs~d~---~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (371)
T d1k8kc_         247 LAVTFITES---SLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS  322 (371)
T ss_dssp             EEEEEEETT---EEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSS
T ss_pred             eeeeecCCC---CEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecc
Confidence            899999987   5666655 67666655433221110000                                  000112


Q ss_pred             ccccCeEEEEEcCCC----CEEEEEeCCCcEEEEeccC
Q 009203          465 ESQSALINQSWSPDG----LYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       465 ~~~~~v~~~~~sp~g----~~l~sg~~dg~i~iwd~~~  498 (540)
                      .|.+.|+++++.+.+    ..|+|++.||.|+|||+++
T Consensus       323 ~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             SSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            488899999998754    3589999999999999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-32  Score=261.88  Aligned_cols=285  Identities=14%  Similarity=0.197  Sum_probs=231.9

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hhcccc
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HVSSLH  222 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~~~~h  222 (540)
                      .+++.||...|.++++.|...                               .+++++.|++|++|+..     ..+.+|
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~-------------------------------~l~sgs~Dg~v~iWd~~~~~~~~~~~~~   96 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSR-------------------------------LLVSASQDGKLIIWDSYTTNKVHAIPLR   96 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-------------------------------EEEEEETTTEEEEEETTTTEEEEEEECS
T ss_pred             eEEECCCCCCEEEEEECCCCC-------------------------------EEEEEECCCceeeeecccceeEEEEecc
Confidence            346789999999999998753                               57889999999999765     457899


Q ss_pred             cCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeE
Q 009203          223 KRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQI  302 (540)
Q Consensus       223 ~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i  302 (540)
                      .+.|++++|+|+ +.++++|+.|+.+++|+..............    .+|........+.. +..++..    ..+...
T Consensus        97 ~~~v~~v~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~----~~~~~~  166 (340)
T d1tbga_          97 SSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSREL----AGHTGYLSCCRFLD-DNQIVTS----SGDTTC  166 (340)
T ss_dssp             CSCEEEEEECTT-SSEEEEEETTCCEEEEESSSSCSCCCEEEEE----CCCSSCEEEEEEEE-TTEEEEE----ETTTEE
T ss_pred             cccEEeeEeecc-ceeeeeecccceeecccccccccccccceec----cccccccccccccc-ccccccc----cccccc
Confidence            999999999995 9999999999999999987765443333222    36666666555554 4456665    788999


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      ..|.....   ........   +...+....+.+ ...++++|+.|+.|++||+++++.   ..  ...+|...|++++|
T Consensus       167 ~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~---~~--~~~~h~~~i~~v~~  234 (340)
T d1tbga_         167 ALWDIETG---QQTTTFTG---HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC---RQ--TFTGHESDINAICF  234 (340)
T ss_dssp             EEEETTTT---EEEEEEEC---CSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEE---EE--EECCCSSCEEEEEE
T ss_pred             cccccccc---cccccccc---cceeEeeecccc-ccceeEEeecCceEEEEECCCCcE---EE--EEeCCCCCeEEEEE
Confidence            99988764   22222222   346688999999 899999999999999999998874   22  23569999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeee---ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADFKH---QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW  459 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~  459 (540)
                      +|++++|++|+.||.|++||++........   .....+.++.|+|++   .+|++|+.||.|++||+.+++...     
T Consensus       235 ~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~g~~dg~i~iwd~~~~~~~~-----  306 (340)
T d1tbga_         235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG---RLLLAGYDDFNCNVWDALKADRAG-----  306 (340)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS---CEEEEEETTSCEEEEETTTCCEEE-----
T ss_pred             CCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCC---CEEEEEECCCEEEEEECCCCcEEE-----
Confidence            999999999999999999999988776543   334668899999987   799999999999999999877543     


Q ss_pred             ccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          460 KQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       460 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                        .+.+|...|++++|+|++.+|++|+.||.|+|||
T Consensus       307 --~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         307 --VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --EECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --EEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence              4568999999999999999999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-32  Score=257.20  Aligned_cols=295  Identities=13%  Similarity=0.171  Sum_probs=224.7

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      .+++++.|++|++|+..     ..+.+|.+.|++++|+|+   +|++|+.|+.+++|+..........        ..+.
T Consensus        29 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~~~~~~~~~~~~~~~~~--------~~~~   97 (342)
T d2ovrb2          29 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAETGECIHTL--------YGHT   97 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEE--------CCCS
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC---ccccceecccccccccccccceecc--------cccc
Confidence            47889999999999764     568999999999999973   8999999999999999876543332        2333


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      ..+....+  ....++.+    ..|+.+.+|+..++.   ....+..   ...  ....+.+ ....+++++.|+.|++|
T Consensus        98 ~~~~~~~~--~~~~~~~~----~~d~~i~~~~~~~~~---~~~~~~~---~~~--~~~~~~~-~~~~~~~~~~d~~i~~~  162 (342)
T d2ovrb2          98 STVRCMHL--HEKRVVSG----SRDATLRVWDIETGQ---CLHVLMG---HVA--AVRCVQY-DGRRVVSGAYDFMVKVW  162 (342)
T ss_dssp             SCEEEEEE--ETTEEEEE----ETTSEEEEEESSSCC---EEEEEEC---CSS--CEEEEEE-CSSCEEEEETTSCEEEE
T ss_pred             eeEeeeec--cccccccc----ccceeEEEeeccccc---ceeeeec---ccc--cceeecc-ccceeeeecCCCeEEEe
Confidence            34444433  34567777    799999999999863   2333332   112  2223334 66789999999999999


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEE
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  433 (540)
                      |......     .....+|...+..+.  +++.++++++.||.|++||++.++.+..... ...+.++.+++     .+|
T Consensus       163 d~~~~~~-----~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-----~~l  230 (342)
T d2ovrb2         163 DPETETC-----LHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-----NIL  230 (342)
T ss_dssp             EGGGTEE-----EEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-----TEE
T ss_pred             eccccee-----eEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC-----CEE
Confidence            9987764     222244666555554  4789999999999999999999888766443 45667777776     489


Q ss_pred             EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccc-----c
Q 009203          434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSI-----R  508 (540)
Q Consensus       434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~  508 (540)
                      ++|+.|+.|++||+...+......    ....|...+.++.++  ++++++|+.||.|+|||+.+  ++.+..+     .
T Consensus       231 ~s~s~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t--g~~i~~~~~~~~~  302 (342)
T d2ovrb2         231 VSGNADSTVKIWDIKTGQCLQTLQ----GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT--GEFIRNLVTLESG  302 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC----STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT--CCEEEEEEECTTG
T ss_pred             EEEcCCCEEEEEeccccccccccc----ccceeeeceeecccC--CCeeEEEcCCCEEEEEECCC--CCEEEEEecccCC
Confidence            999999999999999877544322    334577788888875  56999999999999999998  6666655     3


Q ss_pred             ccccceeEEEEcCCCCEEEEEEcCCc----EEEEeC
Q 009203          509 AHQKRVFKAVWHYSHPLLISISSDLN----IGLHKI  540 (540)
Q Consensus       509 ~h~~~i~~l~~s~~~~~l~s~~~dg~----v~iw~l  540 (540)
                      +|.+.|++++|+|++.+|++|+.||+    |++||+
T Consensus       303 ~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence            67889999999999999999999986    999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.3e-33  Score=258.95  Aligned_cols=284  Identities=13%  Similarity=0.181  Sum_probs=219.4

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc-----hh-ccc
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN-----HV-SSL  221 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~-----~~-~~~  221 (540)
                      .+...||...|+++++.|...                               .+++++.|++|++|+..     .+ ..+
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~-------------------------------~l~s~s~Dg~v~vWd~~~~~~~~~~~~~   53 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGK-------------------------------TLFSADAEGHINSWDISTGISNRVFPDV   53 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-------------------------------EEEEEETTSCEEEEETTTCCEEECSSCS
T ss_pred             ceEcCCCCCCcEEEEECCCCC-------------------------------EEEEEcCCCeEEEEECCCCcEEEEEcCC
Confidence            456789999999999998742                               47788999999999764     23 368


Q ss_pred             ccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCe
Q 009203          222 HKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQ  301 (540)
Q Consensus       222 h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~  301 (540)
                      |.+.|++++|+|+ +.+ ++++.|+.+++|+..........     .....|...+.+++|++++.+++++     .++.
T Consensus        54 h~~~v~~v~~~~~-g~~-~~~~~d~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~~g~~~~~~-----~~~~  121 (299)
T d1nr0a2          54 HATMITGIKTTSK-GDL-FTVSWDDHLKVVPAGGSGVDSSK-----AVANKLSSQPLGLAVSADGDIAVAA-----CYKH  121 (299)
T ss_dssp             CSSCEEEEEECTT-SCE-EEEETTTEEEEECSSSSSSCTTS-----CCEEECSSCEEEEEECTTSSCEEEE-----ESSE
T ss_pred             CCCcEEEEEeecc-cee-ecccceeeEEEeccCCccccccc-----ccccccccccccccccccccccccc-----cccc
Confidence            9999999999996 764 56677999999998754322111     1113566778999999999988775     5678


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      +.+|+...     ......     ...+.+++|+| ++.+|++|+.||.|++||++++..    .......|...|++++
T Consensus       122 i~~~~~~~-----~~~~~~-----~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~----~~~~~~~~~~~i~~~~  186 (299)
T d1nr0a2         122 IAIYSHGK-----LTEVPI-----SYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV----SEVKTIVHPAEITSVA  186 (299)
T ss_dssp             EEEEETTE-----EEEEEC-----SSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE----EEEEEEECSSCEEEEE
T ss_pred             cccccccc-----cccccc-----ccccccccccc-cccccccccccccccccccccccc----cccccccccccccccc
Confidence            99998653     233322     24578999999 999999999999999999988763    3333345889999999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeee----eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFK----HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      |+|++.+|++++.|+.|++||+.++.....    ..+...+.++.|+|++   .+|++|+.||.|++||+.+........
T Consensus       187 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~sgs~dg~i~iwd~~~~~~~~~~~  263 (299)
T d1nr0a2         187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN---VRLATGSLDNSVIVWNMNKPSDHPIII  263 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTCTTSCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc---cceEEEcCCCEEEEEECCCCCcceEEE
Confidence            999999999999999999999988765432    2235678899999987   699999999999999998766433221


Q ss_pred             ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                          ....+...+.++.| +++.+|++|+.||.|++||+.
T Consensus       264 ----~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         264 ----KGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ----TTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             ----ecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence                11234455666655 567899999999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-33  Score=262.64  Aligned_cols=302  Identities=10%  Similarity=0.083  Sum_probs=221.1

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC-CeEEEEeec
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG-NSLFSAHTA  295 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~s~~~~  295 (540)
                      +++.+|++.|++|+|+|+ +.+||+|+.||+|+|||+........+...     .+|..+|.+++|+|++ .+|++|   
T Consensus         5 ~~~~~h~d~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~-----~~h~~~V~~v~f~~~~~~~l~sg---   75 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-----LRYKHPLLCCNFIDNTDLQIYVG---   75 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEE-----EECSSCEEEEEEEESSSEEEEEE---
T ss_pred             EcCCCCCCCEEEEEEeCC-CCEEEEEECCCeEEEEEccCCCcceEEEEe-----cCCCCCEEEEEEeCCCCCEEEEc---
Confidence            357899999999999996 899999999999999999877654444332     2688999999999875 478888   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccce-eecccCC
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKA-LHRNLHS  374 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~  374 (540)
                       +.|+.|++|++.....   ......  ++........+.+ +...+++++.|+.+++||++.+........ .......
T Consensus        76 -~~d~~v~~w~~~~~~~---~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~  148 (342)
T d1yfqa_          76 -TVQGEILKVDLIGSPS---FQALTN--NEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             -ETTSCEEEECSSSSSS---EEECBS--CCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred             -ccccceeeeecccccc---cccccc--ccccccccccccc-ccccccccccccccceeeccccccceeeeccccccccc
Confidence             9999999999987632   333322  1233344555566 888999999999999999976553211111 1111123


Q ss_pred             cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee----eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          375 SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK----HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       375 ~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      .....+.+.+++..+++++.|+.|++||++.......    ...........+.+.+.  ..+++++.||.+.+|+....
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~dg~~~v~~~~~~  226 (342)
T d1yfqa_         149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ--EGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG--CEEEEEETTSEEEEEECCTT
T ss_pred             ceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC--CEEEeecCCCeEEEEEecCC
Confidence            3445667778899999999999999999987665322    23334455555554332  58999999999999998754


Q ss_pred             cceee--------eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203          451 QTEIH--------AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       451 ~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      .....        .........+|...|++++|+|++++|++|+.||.|+|||+.+  ++.+..+..+ ..+..++|+|+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~--~~~l~~~~~~-~~~~~~~~s~~  303 (342)
T d1yfqa_         227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT--RKKIKNFAKF-NEDSVVKIACS  303 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT--TEEEEECCCC-SSSEEEEEEEC
T ss_pred             cceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC--CcEEEEecCC-CCCEEEEEEeC
Confidence            32111        1111123456778899999999999999999999999999998  6777777543 24556788889


Q ss_pred             CCEEEEEEcCCcEEEEe
Q 009203          523 HPLLISISSDLNIGLHK  539 (540)
Q Consensus       523 ~~~l~s~~~dg~v~iw~  539 (540)
                      +++|++++.|+.+++|.
T Consensus       304 ~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         304 DNILCLATSDDTFKTNA  320 (342)
T ss_dssp             SSEEEEEEECTHHHHCS
T ss_pred             CCEEEEEEcCCcEEEee
Confidence            99999999998877764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-32  Score=258.41  Aligned_cols=289  Identities=15%  Similarity=0.104  Sum_probs=211.9

Q ss_pred             CceEEEEEecCCCcEEEEEeCCc-eEEEEEcCCCCCcceeecccccCCCCC-CCCceeEEEec--CCCeEEEEeecCCCC
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDG-VIRLWQLQSRGSGASLLSTTDCLSPKH-RRWPEDIAWHP--QGNSLFSAHTADSGD  299 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~~--~~~~l~s~~~~~~~d  299 (540)
                      +.+++++|+|+ +..|+.++.+. .|+.|+............      .+| ...|++++|+|  +|.+|++|    +.|
T Consensus        18 ~~~t~l~~~~~-~~~la~~~~~~~~i~~~~~~~~~~~~~~~~------~gh~~~~v~~v~fsP~~~g~~lasg----s~D   86 (325)
T d1pgua1          18 NFTTHLSYDPT-TNAIAYPCGKSAFVRCLDDGDSKVPPVVQF------TGHGSSVVTTVKFSPIKGSQYLCSG----DES   86 (325)
T ss_dssp             TCCCCCEEETT-TTEEEEEETTEEEEEECCSSCCSSCSEEEE------CTTTTSCEEEEEECSSTTCCEEEEE----ETT
T ss_pred             CCeEEEEECCC-CCEEEEEeCCCEEEEEEeCCCCCccceEEE------eCCCCCCEEEEEEeeCCCCCEEEEE----eCC
Confidence            35789999996 88888877554 356676554432221111      355 46799999998  56799999    999


Q ss_pred             CeEEEEecCCCCCceeEEee--cCCCCcccceeEEEEeCCCCCEEEEEec--CCcEEEEecCCCCCccccceeecccCCc
Q 009203          300 SQISVLNLNKTKGRACVTFL--DDKPHVKGIINSIIFLPWENPCFATGGS--DHAVVLWSERDAEDSWKPKALHRNLHSS  375 (540)
Q Consensus       300 ~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~  375 (540)
                      |+|+|||+..+.........  .....|.++|.+++|++ ++.++++++.  ++.+.+|+..+++.   ...  ..+|..
T Consensus        87 g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~--~~~h~~  160 (325)
T d1pgua1          87 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNS---LGE--VSGHSQ  160 (325)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCE---EEE--CCSCSS
T ss_pred             CCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeeccccc---cee--eeeccc
Confidence            99999999765322221110  00112567899999999 9998887764  67899999988764   222  256999


Q ss_pred             ceeEEEeccCCCE-EEEEeCCCeEEEEECCCCCeeeee----ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          376 AVMGVAGMQQKQI-VLSAGADKRIIGFDAGVGRADFKH----QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       376 ~v~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      .|.+++|+|++.+ +++++.|+.+++||....+.....    .....+.+++|+|+..  .++++++.|+.|++||++++
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~--~~l~s~~~d~~i~iwd~~~~  238 (325)
T d1pgua1         161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG--EFVITVGSDRKISCFDGKSG  238 (325)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC--CEEEEEETTCCEEEEETTTC
T ss_pred             ccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccc--eeccccccccceeeeeeccc
Confidence            9999999998875 678999999999999877654432    3346688999999643  58999999999999999987


Q ss_pred             cceeeeeccccccCccccCeEEEEEc---CCCCEEEEEeCCCcEEEEeccCCCCccccccccccc--ceeEEEEcCC-CC
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWS---PDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK--RVFKAVWHYS-HP  524 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~s---p~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~--~i~~l~~s~~-~~  524 (540)
                      +...       .+.+|...+.++.|+   |+|++|++++.|+.|+|||+.+  ++++..+..|..  .+..+++.+. +.
T Consensus       239 ~~~~-------~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (325)
T d1pgua1         239 EFLK-------YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT--SKCVQKWTLDKQQLGNQQVGVVATGNG  309 (325)
T ss_dssp             CEEE-------ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT--TEEEEEEECCTTCGGGCEEEEEEEETT
T ss_pred             cccc-------cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC--CCEEEEEEecCCcccCeEEEEEECCCC
Confidence            7533       334566666555554   6899999999999999999997  677777665544  3444444433 34


Q ss_pred             EEEEEEcCCcEEEEeC
Q 009203          525 LLISISSDLNIGLHKI  540 (540)
Q Consensus       525 ~l~s~~~dg~v~iw~l  540 (540)
                      +|+++|.||.|+||||
T Consensus       310 ~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         310 RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTSCEEEEET
T ss_pred             EEEEEECCCEEEEEEC
Confidence            7999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-32  Score=250.75  Aligned_cols=275  Identities=18%  Similarity=0.181  Sum_probs=214.9

Q ss_pred             cccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCC
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSG  298 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~  298 (540)
                      ..+|...|+|++|  | +++||||+.||+|+|||+.+++...++        .+|.+.|++++|  ++++|+++    +.
T Consensus        11 ~~~~~~~V~c~~~--d-~~~l~sgs~Dg~i~vWd~~~~~~~~~l--------~~H~~~V~~v~~--~~~~l~s~----s~   73 (293)
T d1p22a2          11 RSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNTLECKRIL--------TGHTGSVLCLQY--DERVIITG----SS   73 (293)
T ss_dssp             CCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSSCCEEEEE--------CCCSSCEEEEEC--CSSEEEEE----ET
T ss_pred             cCCCCCCEEEEEE--c-CCEEEEEeCCCeEEEEECCCCcEEEEE--------ecCCCCEeeeec--ccceeecc----cc
Confidence            4688899999765  4 789999999999999999998877776        689999999887  57899999    99


Q ss_pred             CCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCccee
Q 009203          299 DSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       299 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      |+.|++|++..+.   .......     .......+.+ ....++++..++.+.+||...........  ....|...+.
T Consensus        74 D~~i~~~~~~~~~---~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~  142 (293)
T d1p22a2          74 DSTVRVWDVNTGE---MLNTLIH-----HCEAVLHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRR--VLVGHRAAVN  142 (293)
T ss_dssp             TSCEEEEESSSCC---EEEEECC-----CCSCEEEEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEE--EECCCSSCEE
T ss_pred             ccccccccccccc---ccccccc-----cccccccccc-cccceeecccccceeEeeccccccccccc--cccccccccc
Confidence            9999999999762   2333322     1123344555 66789999999999999998876432222  2245788888


Q ss_pred             EEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          379 GVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       379 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      .+.+.  ...+++++.|+.|++||+++++.+..+.. ...+..+.+++     .++++++.||.|++||+++......  
T Consensus       143 ~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~--  213 (293)
T d1p22a2         143 VVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-----RLVVSGSSDNTIRLWDIECGACLRV--  213 (293)
T ss_dssp             EEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-----TEEEEEETTSCEEEEETTTCCEEEE--
T ss_pred             cceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCCC-----CeEEEecCCCEEEEEecccceeeee--
Confidence            88876  46788999999999999999988766543 34556666665     4899999999999999998775442  


Q ss_pred             ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCC-------CcccccccccccceeEEEEcCCCCEEEEEE
Q 009203          458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSA-------NKPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~-------~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                           ..+|...+..  +++++.+|++|+.||.|++||+....       ..++..+.+|.+.|++++|  ++.+|+|||
T Consensus       214 -----~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s  284 (293)
T d1p22a2         214 -----LEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS  284 (293)
T ss_dssp             -----ECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECC
T ss_pred             -----ecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEe
Confidence                 3456666664  55688899999999999999986421       2345677899999999999  567899999


Q ss_pred             cCCcEEEEe
Q 009203          531 SDLNIGLHK  539 (540)
Q Consensus       531 ~dg~v~iw~  539 (540)
                      .||+|+|||
T Consensus       285 ~Dg~i~iWD  293 (293)
T d1p22a2         285 HDDTILIWD  293 (293)
T ss_dssp             SSSEEEEEC
T ss_pred             cCCEEEEeC
Confidence            999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-33  Score=258.74  Aligned_cols=267  Identities=18%  Similarity=0.240  Sum_probs=211.8

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +++.||.++|++|+|+|     |+||+.||+|++||+.++.             .+|...|.+++|++++ .++++    
T Consensus         7 ~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~-------------~~h~~~V~~~~~~~~~-~~~s~----   63 (287)
T d1pgua2           7 KTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH-------------QDHSNLIVSLDNSKAQ-EYSSI----   63 (287)
T ss_dssp             EEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE-------------CCCCSCEEEEECCSTT-CCEEE----
T ss_pred             EEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC-------------CCCCCCEEEEEecCCC-eEEEE----
Confidence            35789999999999987     7999999999999986532             4789999999998765 56777    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|++|++|++...       .+      ...+.++.+++ ++..++++ .++.+.+|+..++..   ...+.   +...
T Consensus        64 s~D~~v~~w~~~~~-------~~------~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~---~~~~  122 (287)
T d1pgua2          64 SWDDTLKVNGITKH-------EF------GSQPKVASANN-DGFTAVLT-NDDDLLILQSFTGDI---IKSVR---LNSP  122 (287)
T ss_dssp             ETTTEEEETTEEEE-------EC------SSCEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCE---EEEEE---CSSC
T ss_pred             eecccccccccccc-------cc------ccceeeeeecc-CCceEEEe-ecccceeeeccceee---eeecc---ccce
Confidence            89999999998642       11      23477888887 77666654 566788999988764   22221   2233


Q ss_pred             eeEEEeccCCCEEEEEeCCC-eEEEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          377 VMGVAGMQQKQIVLSAGADK-RIIGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                        ..++++++..+++++.++ .+++|++........  ......+.+++|+|++   .+|++|+.||.|++||+.++...
T Consensus       123 --~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         123 --GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE---TYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             --EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEE
T ss_pred             --eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCc---cccccccccccccceeecccccc
Confidence              345667788888888765 799999986555443  2345678899999987   69999999999999999987653


Q ss_pred             eeeeccccccCccccCeEEEEEcCC----------CCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203          454 IHAFGWKQESSESQSALINQSWSPD----------GLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH  523 (540)
Q Consensus       454 ~~~~~~~~~~~~~~~~v~~~~~sp~----------g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~  523 (540)
                      ..      ...+|...|.+++|+|+          +.+|++|+.|+.|+|||+..+ .+.+..+.+|.+.|++++|+|++
T Consensus       198 ~~------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~-~~~~~~~~~h~~~V~~v~~~~~~  270 (287)
T d1pgua2         198 TS------RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-MKIIKALNAHKDGVNNLLWETPS  270 (287)
T ss_dssp             EC------CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-TCCEEETTSSTTCEEEEEEEETT
T ss_pred             cc------cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC-CeEEEEeCCCCCCeEEEEECCCC
Confidence            32      34678999999999875          468999999999999999864 56777788999999999999986


Q ss_pred             CEEEEEEcCCcEEEEeC
Q 009203          524 PLLISISSDLNIGLHKI  540 (540)
Q Consensus       524 ~~l~s~~~dg~v~iw~l  540 (540)
                       .|+++|.||+|++|++
T Consensus       271 -~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         271 -TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -EEEEEETTSCEEEEEE
T ss_pred             -EEEEEECCCeEEEEEE
Confidence             6899999999999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-32  Score=260.82  Aligned_cols=283  Identities=15%  Similarity=0.165  Sum_probs=214.1

Q ss_pred             hcccccCce-EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          218 VSSLHKRKL-RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       218 ~~~~h~~~V-~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +|+||.+.| +|++|+   +++||||+.||+|+|||+.+++.+.++        .+|.++|++++|+|+ .+|+++    
T Consensus         7 tL~GH~~~vitc~~~~---~~~l~tgs~Dg~i~vWd~~~~~~~~~l--------~~H~~~V~~l~~s~~-~~l~s~----   70 (355)
T d1nexb2           7 TLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQL--------SGHDGGVWALKYAHG-GILVSG----   70 (355)
T ss_dssp             EEECCSSSCEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEE--------ECCSSCEEEEEEETT-TEEEEE----
T ss_pred             EECCcCCCcEEEEEEC---CCEEEEEeCCCeEEEEECCCCcEEEEE--------ECCCCCEEEEEEcCC-CEEEEE----
Confidence            478998885 666654   679999999999999999998877766        589999999999985 588998    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc----------
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK----------  366 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------  366 (540)
                      +.|+.|++|++...   ......... .+........+.+ ++..+++++.|+.|++||+.+........          
T Consensus        71 s~D~~i~iw~~~~~---~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d1nexb2          71 STDRTVRVWDIKKG---CCTHVFEGH-NSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  145 (355)
T ss_dssp             ETTCCEEEEETTTT---EEEEEECCC-SSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred             eccccccccccccc---ccccccccc-ccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence            99999999999875   333333322 2234456677788 88999999999999999998765321110          


Q ss_pred             --------eeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-cCccEEEEeecCCCCCceEEEEEc
Q 009203          367 --------ALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-IESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       367 --------~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                              ......|...+.  .+.+++++++++..|+.|++||+++++.+.... ......++.++|.+   .++++++
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  220 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER---KRCISAS  220 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT---TEEEEEE
T ss_pred             ccccccceeeeeeecccccc--ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccc---eeeeccc
Confidence                    001111333333  345578999999999999999999988776544 45667788888877   6899999


Q ss_pred             CCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEE
Q 009203          438 PGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKA  517 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l  517 (540)
                      .|+.|++||+.++....       .+.+|...|.+++|+  +++|++|+.||.|++||+.+  ..  ..+..|...+.++
T Consensus       221 ~d~~i~i~d~~~~~~~~-------~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~--~~--~~~~~~~~~~~~~  287 (355)
T d1nexb2         221 MDTTIRIWDLENGELMY-------TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND--YS--RKFSYHHTNLSAI  287 (355)
T ss_dssp             TTSCEEEEETTTCCEEE-------EECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTT--CC--EEEEEECTTCCCC
T ss_pred             ccceEEeeecccccccc-------ccccccccccccccc--cceeeeeecccccccccccc--cc--eecccccCCceEE
Confidence            99999999999877543       346789999999996  46999999999999999986  32  3455677777766


Q ss_pred             E-EcCCCCEEEEEEcCCcEEEEeC
Q 009203          518 V-WHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       518 ~-~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      . +++++.+|++| .||.|+|||+
T Consensus       288 ~~~~~~~~~l~~g-~d~~i~vwd~  310 (355)
T d1nexb2         288 TTFYVSDNILVSG-SENQFNIYNL  310 (355)
T ss_dssp             CEEEECSSEEEEE-ETTEEEEEET
T ss_pred             EEEcCCCCEEEEE-eCCEEEEEEC
Confidence            4 56676666655 5999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-31  Score=261.22  Aligned_cols=307  Identities=12%  Similarity=0.104  Sum_probs=216.4

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEe---c----CCCeEE
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWH---P----QGNSLF  290 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~---~----~~~~l~  290 (540)
                      +.++|.+.|++|++++   ++|+||+.|++|+|||....+...........  ..|...+..+...   +    ++.+++
T Consensus         9 ~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH--FVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             ESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE--ECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             cCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEee--eeccCCceEeeeEeeeccCCCCCcEEE
Confidence            4589999999999875   48999999999999998765532211111100  2344443333321   1    233677


Q ss_pred             EEeecCCCCCeEEEEecCCCCCceeEEe--ec--CCCCcccceeEEEEeCCC----CCEEEEEecCCcEEEEecCCCCCc
Q 009203          291 SAHTADSGDSQISVLNLNKTKGRACVTF--LD--DKPHVKGIINSIIFLPWE----NPCFATGGSDHAVVLWSERDAEDS  362 (540)
Q Consensus       291 s~~~~~~~d~~i~vwd~~~~~~~~~~~~--~~--~~~~~~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~~~~~~  362 (540)
                      ++    +.||.|++|++...........  ..  ....+...+..++|.+..    +.++++++.||.+++|++......
T Consensus        84 s~----~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          84 TT----SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EE----ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             EE----eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            77    8999999999875533222221  11  111234567888888722    467899999999999998643210


Q ss_pred             cc-------------cceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec-------cCccEEEEe
Q 009203          363 WK-------------PKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ-------IESKCMSVL  422 (540)
Q Consensus       363 ~~-------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~  422 (540)
                      ..             ........+...+++++|+|++ +|++|+.||+|++||+.+++.+....       +...+.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence            00             0001112355678999999987 88999999999999999988765432       356789999


Q ss_pred             ecCCCCCceEEEEEcCCC---eEEEEECCCCcceeeee------ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 009203          423 PNPCDFNLFMVQTGTPGR---QLRLYDIRLRQTEIHAF------GWKQESSESQSALINQSWSPDGLYITSGSADPVIHL  493 (540)
Q Consensus       423 ~~~~~~~~~~l~~~~~dg---~v~i~d~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~i  493 (540)
                      |+|++   .+|++|+.|+   .|++||+.++.......      .....+.+|...|++++|+|+|++|++|+.|++|+|
T Consensus       239 ~spdg---~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~v  315 (393)
T d1sq9a_         239 FSPQG---SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRF  315 (393)
T ss_dssp             ECSST---TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             ccccc---ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEE
Confidence            99988   7999999887   49999999876533221      112244689999999999999999999999999999


Q ss_pred             EeccCCCCcccccccccccc---------------------eeEEEEcCCC----------CEEEEEEcCCcEEEEe
Q 009203          494 FDIRYSANKPSQSIRAHQKR---------------------VFKAVWHYSH----------PLLISISSDLNIGLHK  539 (540)
Q Consensus       494 wd~~~~~~~~~~~~~~h~~~---------------------i~~l~~s~~~----------~~l~s~~~dg~v~iw~  539 (540)
                      ||+.+  ++++.++.+|.+.                     ++++.|.+.+          ..|++++.|+.|++|+
T Consensus       316 Wd~~~--g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         316 WDVKT--KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EETTT--TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             EECCC--CCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            99998  7888888888643                     4556665533          3588899999999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-31  Score=252.38  Aligned_cols=258  Identities=15%  Similarity=0.117  Sum_probs=192.1

Q ss_pred             cccc-cCceEEEEEecC-CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          219 SSLH-KRKLRSLSLNPV-NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       219 ~~~h-~~~V~~l~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      +.+| ...|++++|+|+ ++.+||+|+.||+|+|||+..+.....+..........|..+|.+++|++++++|+++..  
T Consensus        58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~--  135 (325)
T d1pgua1          58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE--  135 (325)
T ss_dssp             ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC--
T ss_pred             EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec--
Confidence            5677 468999999984 468999999999999999987766555443332222468889999999999999887621  


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.++.+.+|+++++   .++..+.+   |...|.+++|+|....++++++.|+.|++||+...+......  ....|...
T Consensus       136 ~~~~~~~~~~~~~~---~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~  207 (325)
T d1pgua1         136 GRDNFGVFISWDSG---NSLGEVSG---HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR--THHKQGSF  207 (325)
T ss_dssp             CSSCSEEEEETTTC---CEEEECCS---CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC--SSSCTTCC
T ss_pred             cccceEEEEeeccc---ccceeeee---cccccccccccccccceEEEeecccccccccccccccceecc--cccCCCCc
Confidence            45788999999876   45666654   678899999999444557889999999999998765422111  12457889


Q ss_pred             eeEEEeccC-CCEEEEEeCCCeEEEEECCCCCeeeeecc-C----ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC
Q 009203          377 VMGVAGMQQ-KQIVLSAGADKRIIGFDAGVGRADFKHQI-E----SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR  450 (540)
Q Consensus       377 v~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~  450 (540)
                      |.+++|+|+ +.+|++++.|+.|++||+++++.+..... .    ..+.++.+. ++   .+|++++.|+.|+|||+.++
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~-dg---~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS---QKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS---SEEEEEETTSEEEEEETTTT
T ss_pred             cEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeecc-CC---CEEEEEeCCCeEEEEECCCC
Confidence            999999996 68899999999999999999988765432 2    223344443 33   58999999999999999988


Q ss_pred             cceeeeeccccccCccccCeE--EEEEcCCCCEEEEEeCCCcEEEEec
Q 009203          451 QTEIHAFGWKQESSESQSALI--NQSWSPDGLYITSGSADPVIHLFDI  496 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~--~~~~sp~g~~l~sg~~dg~i~iwd~  496 (540)
                      +......     ...+...+.  ++.+.++ .+|++|+.||.|+|||+
T Consensus       284 ~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         284 KCVQKWT-----LDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEEE-----CCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             CEEEEEE-----ecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            7543321     122333333  4444433 47899999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-29  Score=239.37  Aligned_cols=274  Identities=17%  Similarity=0.206  Sum_probs=207.6

Q ss_pred             hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          217 HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       217 ~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      .+|+||.+.|.+ +++++ |++||||+.||+|+|||+.+++.+.++        .+|...|.+++|+++  +|+++    
T Consensus        10 ~~l~GH~~~V~s-~~~~~-g~~l~sgs~Dg~i~vWd~~~~~~~~~~--------~~h~~~V~~v~~~~~--~l~s~----   73 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTL--------VGHTGGVWSSQMRDN--IIISG----   73 (342)
T ss_dssp             EEEECSTTSCEE-EEEEE-TTEEEEEETTSCEEEEETTTCCEEEEC--------CCCSSCEEEEEEETT--EEEEE----
T ss_pred             EEECCcCCceEE-EEEEC-CCEEEEEeCCCeEEEEECCCCCEEEEE--------eCCCCCEEEEEeCCC--ccccc----
Confidence            467899999865 36664 789999999999999999998876665        589999999999874  89999    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSA  376 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  376 (540)
                      +.|+.+++|+....   ........   +...+....+   ....++.+..|+.+.+|+..++..   ...+.  .+.. 
T Consensus        74 s~D~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~--~~~~-  138 (342)
T d2ovrb2          74 STDRTLKVWNAETG---ECIHTLYG---HTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQC---LHVLM--GHVA-  138 (342)
T ss_dssp             ETTSCEEEEETTTT---EEEEEECC---CSSCEEEEEE---ETTEEEEEETTSEEEEEESSSCCE---EEEEE--CCSS-
T ss_pred             eecccccccccccc---cceecccc---cceeEeeeec---ccccccccccceeEEEeecccccc---eeeee--cccc-
Confidence            99999999999865   22333222   2344555555   446788999999999999998764   12221  1222 


Q ss_pred             eeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-CccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          377 VMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-ESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       377 v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                       ....+.+....+++++.|+.|++||......+..... ...+....+++     .++++|+.||.|++||++...... 
T Consensus       139 -~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~s~~~dg~i~~~d~~~~~~~~-  211 (342)
T d2ovrb2         139 -AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG-----IHVVSGSLDTSIRVWDVETGNCIH-  211 (342)
T ss_dssp             -CEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECS-----SEEEEEETTSCEEEEETTTCCEEE-
T ss_pred             -cceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCC-----CEEEEEeCCCeEEEeecccceeee-
Confidence             2333445678899999999999999998877665433 34455555544     589999999999999999877543 


Q ss_pred             eeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc---ccccceeEEEEcCCCCEEEEEEcC
Q 009203          456 AFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR---AHQKRVFKAVWHYSHPLLISISSD  532 (540)
Q Consensus       456 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~---~h~~~i~~l~~s~~~~~l~s~~~d  532 (540)
                            ...+|...+.+++++  +++|++|+.||.|++||+..  .+....+.   .|...+.++.++  +.++++|+.|
T Consensus       212 ------~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~D  279 (342)
T d2ovrb2         212 ------TLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT--GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD  279 (342)
T ss_dssp             ------EECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTT--CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT
T ss_pred             ------EecccccceeEEecC--CCEEEEEcCCCEEEEEeccc--ccccccccccceeeeceeecccC--CCeeEEEcCC
Confidence                  345788888888875  56999999999999999987  44444443   456677777774  5699999999


Q ss_pred             CcEEEEeC
Q 009203          533 LNIGLHKI  540 (540)
Q Consensus       533 g~v~iw~l  540 (540)
                      |+|+|||+
T Consensus       280 g~i~iwd~  287 (342)
T d2ovrb2         280 GTVKLWDL  287 (342)
T ss_dssp             SEEEEEET
T ss_pred             CEEEEEEC
Confidence            99999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4e-30  Score=239.37  Aligned_cols=271  Identities=13%  Similarity=0.120  Sum_probs=209.3

Q ss_pred             eeeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccchhcccccCceE
Q 009203          148 STQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSNHVSSLHKRKLR  227 (540)
Q Consensus       148 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~~~~~~h~~~V~  227 (540)
                      ++.+.+|...|.++.+.|                                   +++++.|++|++|+......+|...|.
T Consensus         6 i~~l~gH~~~I~~l~~s~-----------------------------------l~sgs~Dg~v~~Wd~~~~~~~h~~~V~   50 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP-----------------------------------LISGSYDGRIMEWSSSSMHQDHSNLIV   50 (287)
T ss_dssp             EEEECCCSSCEEEEETTT-----------------------------------TEEEETTSCEEETTTTEEECCCCSCEE
T ss_pred             eEEECCCCCceEEEEECc-----------------------------------EEEEeCCCeEEEEECCCCCCCCCCCEE
Confidence            456778888888876642                                   567889999999998877889999999


Q ss_pred             EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203          228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL  307 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~  307 (540)
                      +++|++  +..+++++.|++|++|++...+               ....+..+++++++..++++     .++.+.+|+.
T Consensus        51 ~~~~~~--~~~~~s~s~D~~v~~w~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  108 (287)
T d1pgua2          51 SLDNSK--AQEYSSISWDDTLKVNGITKHE---------------FGSQPKVASANNDGFTAVLT-----NDDDLLILQS  108 (287)
T ss_dssp             EEECCS--TTCCEEEETTTEEEETTEEEEE---------------CSSCEEEEEECSSSEEEEEE-----TTSEEEEEET
T ss_pred             EEEecC--CCeEEEEeeccccccccccccc---------------cccceeeeeeccCCceEEEe-----ecccceeeec
Confidence            999997  3468999999999999986532               11235678899988887775     5667888988


Q ss_pred             CCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC-cEEEEecCCCCCccccceeecccCCcceeEEEeccCC
Q 009203          308 NKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH-AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQK  386 (540)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~  386 (540)
                      .++   ..+..+..    ...+  .++++ ++..+++++.++ .|++|++.....    .......|...+++++|+|++
T Consensus       109 ~~~---~~~~~~~~----~~~~--~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~~  174 (287)
T d1pgua2         109 FTG---DIIKSVRL----NSPG--SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEV----SFDLKTPLRAKPSYISISPSE  174 (287)
T ss_dssp             TTC---CEEEEEEC----SSCE--EEEEE-CSSEEEEEETTTSCEEEEETTEEEE----EEECSSCCSSCEEEEEECTTS
T ss_pred             cce---eeeeeccc----ccee--eeeec-cCcceeeeccccceeeeeeccccce----eeeeeeccCCceeEEEeccCc
Confidence            876   34444442    2223  45666 667787777765 799999976542    112223477889999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeee--eccCccEEEEeecCCC-------CCceEEEEEcCCCeEEEEECCCCcceeeee
Q 009203          387 QIVLSAGADKRIIGFDAGVGRADFK--HQIESKCMSVLPNPCD-------FNLFMVQTGTPGRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       387 ~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~  457 (540)
                      .+|++|+.||.|++||+.++.....  ..+...+.++.|+|..       ....++++|+.|++|++||+........  
T Consensus       175 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~--  252 (287)
T d1pgua2         175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK--  252 (287)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEE--
T ss_pred             cccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEE--
Confidence            9999999999999999998876543  3345678889998854       2336899999999999999987554333  


Q ss_pred             ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203          458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI  496 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~  496 (540)
                          .+.+|...|++++|+|++ .|++++.||.|++|++
T Consensus       253 ----~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         253 ----ALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ----ETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ----EeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                446899999999999986 5888999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-27  Score=221.21  Aligned_cols=259  Identities=15%  Similarity=0.222  Sum_probs=196.5

Q ss_pred             eEEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHR  274 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~  274 (540)
                      .+++++.|++|++|+..     .++.+|.+.|++|+|+   +++|++|+.|+.|++|++..+........          
T Consensus        27 ~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~~~~~~~~~----------   93 (293)
T d1p22a2          27 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIH----------   93 (293)
T ss_dssp             EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEECC----------
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeecccccccccccccccccccccccc----------
Confidence            58899999999999765     5689999999999874   56999999999999999998765444321          


Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      .......+.+....++++    ..++.+.+|+............+..   |...+..+.+.+   ..+++++.|+.|++|
T Consensus        94 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~---~~~~~~s~d~~i~~~  163 (293)
T d1p22a2          94 HCEAVLHLRFNNGMMVTC----SKDRSIAVWDMASPTDITLRRVLVG---HRAAVNVVDFDD---KYIVSASGDRTIKVW  163 (293)
T ss_dssp             CCSCEEEEECCTTEEEEE----ETTSCEEEEECSSSSCCEEEEEECC---CSSCEEEEEEET---TEEEEEETTSEEEEE
T ss_pred             cccccccccccccceeec----ccccceeEeeccccccccccccccc---cccccccceecc---cccccccCCCceeee
Confidence            112345566677788888    8999999999987755444444443   567788888755   678899999999999


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCcc-EEEEeecCCCCCceEE
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESK-CMSVLPNPCDFNLFMV  433 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  433 (540)
                      |+++++.   ...  ..++...+..+.++  +.++++++.||.|++||+++...+........ +..+.++  .   .+|
T Consensus       164 d~~~~~~---~~~--~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~---~~l  231 (293)
T d1p22a2         164 NTSTCEF---VRT--LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--N---KRI  231 (293)
T ss_dssp             ETTTCCE---EEE--EECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECC--S---SEE
T ss_pred             cCCCCcE---EEE--EcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeecccc--c---eEE
Confidence            9998874   222  24577778887775  57899999999999999999888776554433 3333333  2   589


Q ss_pred             EEEcCCCeEEEEECCCCcceeeee--ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 009203          434 QTGTPGRQLRLYDIRLRQTEIHAF--GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFD  495 (540)
Q Consensus       434 ~~~~~dg~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd  495 (540)
                      ++|+.||.|++||+..........  .....+.+|.+.|++++|  ++.+|++|+.||+|+|||
T Consensus       232 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            999999999999986533211110  012245789999999999  567899999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.6e-29  Score=241.25  Aligned_cols=253  Identities=12%  Similarity=0.082  Sum_probs=182.0

Q ss_pred             CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce----eEEeecCCCCccccee------EEEEeCCCCC
Q 009203          271 PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA----CVTFLDDKPHVKGIIN------SIIFLPWENP  340 (540)
Q Consensus       271 ~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~~v~------~~~~~p~~~~  340 (540)
                      .+|...|.++++++  ++|+++    +.|++|++||..+.....    ......    +...+.      .+.....+..
T Consensus        11 ~~H~~~I~~v~~~~--~~l~S~----S~D~~iriWd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   80 (393)
T d1sq9a_          11 KAHDADIFSVSACN--SFTVSC----SGDGYLKVWDNKLLDNENPKDKSYSHFV----HKSGLHHVDVLQAIERDAFELC   80 (393)
T ss_dssp             SCSSSCEEEEEECS--SEEEEE----ETTSEEEEEESBCCTTCCGGGGEEEEEC----CTTCEEEEEEEEEEETTTEEEE
T ss_pred             CcccCccEEEEEeC--CEEEEE----ECCCeEEEEECCCCCCCcccceeEeeee----ccCCceEeeeEeeeccCCCCCc
Confidence            69999999999864  689999    999999999987653211    111111    122222      2222221345


Q ss_pred             EEEEEecCCcEEEEecCCCCCccccce-----eecccCCcceeEEEeccC-----CCEEEEEeCCCeEEEEECCCCCe--
Q 009203          341 CFATGGSDHAVVLWSERDAEDSWKPKA-----LHRNLHSSAVMGVAGMQQ-----KQIVLSAGADKRIIGFDAGVGRA--  408 (540)
Q Consensus       341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~v~~l~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~--  408 (540)
                      ++++++.||.|++|++...........     +....+...+..++|.++     +.++++++.||.+++||+.....  
T Consensus        81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  160 (393)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence            678999999999999876543221111     111235566778888765     46889999999999999853211  


Q ss_pred             ------------e-----eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeE
Q 009203          409 ------------D-----FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALI  471 (540)
Q Consensus       409 ------------~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~  471 (540)
                                  +     ........+.++.++|++    +|++|+.|++|++||+.+++.. ..+.....+.+|..+|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----~lasgs~Dg~i~iwd~~~~~~~-~~~~~~~~l~~h~~~V~  235 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG----LIATGFNNGTVQISELSTLRPL-YNFESQHSMINNSNSIR  235 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS----EEEEECTTSEEEEEETTTTEEE-EEEECCC---CCCCCEE
T ss_pred             ceeeeeeccceecccceecccCCCCcEEEEEECCCC----EEEEEeCCCcEEEEeecccccc-cccccccccccccceEE
Confidence                        0     001123456788899876    8899999999999999987743 33333456778999999


Q ss_pred             EEEEcCCCCEEEEEeCCCc---EEEEeccCCCCccccc-------------ccccccceeEEEEcCCCCEEEEEEcCCcE
Q 009203          472 NQSWSPDGLYITSGSADPV---IHLFDIRYSANKPSQS-------------IRAHQKRVFKAVWHYSHPLLISISSDLNI  535 (540)
Q Consensus       472 ~~~~sp~g~~l~sg~~dg~---i~iwd~~~~~~~~~~~-------------~~~h~~~i~~l~~s~~~~~l~s~~~dg~v  535 (540)
                      +++|+|+|++|++|+.|+.   |++||+.+  +..+..             +.+|.+.|++++|+|++++|+|||.|++|
T Consensus       236 ~l~~spdg~~l~sgs~D~t~~~i~lwd~~~--g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         236 SVKFSPQGSLLAIAHDSNSFGCITLYETEF--GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             EEEECSSTTEEEEEEEETTEEEEEEEETTT--CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             EcccccccceeeeecCCCCcceeeeccccc--ceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEE
Confidence            9999999999999999875   89999987  444433             34899999999999999999999999999


Q ss_pred             EEEeC
Q 009203          536 GLHKI  540 (540)
Q Consensus       536 ~iw~l  540 (540)
                      +|||+
T Consensus       314 ~vWd~  318 (393)
T d1sq9a_         314 RFWDV  318 (393)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=5.7e-29  Score=239.05  Aligned_cols=275  Identities=6%  Similarity=-0.050  Sum_probs=204.6

Q ss_pred             EEEEec-CCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCC--CeEEE
Q 009203          228 SLSLNP-VNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGD--SQISV  304 (540)
Q Consensus       228 ~l~~sp-d~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d--~~i~v  304 (540)
                      .-.||| | |+++|+++ +|.|.+||+..+... .         .+|...|.+++|+|||++|+++    +.+  ..|++
T Consensus         7 ~~~fSP~d-G~~~a~~~-~g~v~v~d~~~~~~~-~---------~~~~~~v~~~~~spDg~~l~~~----~~~~g~~v~v   70 (360)
T d1k32a3           7 AEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVL-K---------VPEPLRIRYVRRGGDTKVAFIH----GTREGDFLGI   70 (360)
T ss_dssp             EEEEEECG-GGCEEEEE-TTEEEEECTTSSBEE-E---------CSCCSCEEEEEECSSSEEEEEE----EETTEEEEEE
T ss_pred             cccccCCC-CCEEEEEE-CCeEEEEECCCCcEE-E---------ccCCCCEEEEEECCCCCEEEEE----EcCCCCEEEE
Confidence            467999 6 89999887 579999999876432 1         2688899999999999999876    433  47999


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ  384 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  384 (540)
                      ||+.++.    ...+..   |...|.+++|+| ++++|++++.++.+++|++.++..   ...  ...|...+.+++|+|
T Consensus        71 ~d~~~~~----~~~~~~---~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~sp  137 (360)
T d1k32a3          71 YDYRTGK----AEKFEE---NLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKP---TVI--ERSREAMITDFTISD  137 (360)
T ss_dssp             EETTTCC----EEECCC---CCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE---EEE--EECSSSCCCCEEECT
T ss_pred             EECCCCc----EEEeeC---CCceEEeeeecc-cccccceeccccccccccccccce---eee--eecccccccchhhcc
Confidence            9998752    233332   567899999999 999999999999999999998874   222  245788899999999


Q ss_pred             CCCEEEEEe----------CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          385 QKQIVLSAG----------ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       385 ~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                      +|++|+.+.          .++.+++||+.+++.............+.++|++   .+|++++.++.+.+||........
T Consensus       138 dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg---~~l~~~s~~~~~~~~d~~~~~~~~  214 (360)
T d1k32a3         138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADS---KNLYYLSYRSLDPSPDRVVLNFSF  214 (360)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTS---CEEEEEESCCCCCEECSSSSCEEC
T ss_pred             ceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCC---CEEEEEeCCCceEcccccccceee
Confidence            999998654          3456999999998877777777788889999988   789999999999999976432110


Q ss_pred             ------eeeccc------------------------------cccCccccCeEEEEEcCCC-------------CEEEEE
Q 009203          455 ------HAFGWK------------------------------QESSESQSALINQSWSPDG-------------LYITSG  485 (540)
Q Consensus       455 ------~~~~~~------------------------------~~~~~~~~~v~~~~~sp~g-------------~~l~sg  485 (540)
                            ......                              ..+....+....+...+++             .+++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (360)
T d1k32a3         215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA  294 (360)
T ss_dssp             CSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCC
T ss_pred             ccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEec
Confidence                  000000                              0000011222333333332             235566


Q ss_pred             eCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          486 SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       486 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      +.++.|++||+.+  ++    ...|.+.|.+++|+|||++|++++.||.|++||+
T Consensus       295 ~~~~~i~~~d~~~--~~----~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~  343 (360)
T d1k32a3         295 PEKGVLLKYDVKT--RK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL  343 (360)
T ss_dssp             CCCEEEEEEETTT--CC----EEEEEEEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred             CCCCEEEEEECCC--Ce----EEEecCCcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence            6788999999986  32    2345667999999999999999999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-27  Score=224.76  Aligned_cols=306  Identities=12%  Similarity=0.026  Sum_probs=219.0

Q ss_pred             eeecCCcceeeEEEEcccccccCCCCccEEEEeecCCCceEEecccccccceEEecCCCCeEEEeccc--------hhcc
Q 009203          149 TQASPAAHSIGIVKVKGEKSHRNSSDSEIVEVRDRGTKRKFEQKEHRELIPLVRTSASPATIHCHTSN--------HVSS  220 (540)
Q Consensus       149 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~d~~i~~~~~~--------~~~~  220 (540)
                      ....+|...|+++++.|...                               .+++++.|++|++|+..        ....
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~-------------------------------~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~   53 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKS-------------------------------LLLITSWDGSLTVYKFDIQAKNVDLLQSL   53 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGT-------------------------------EEEEEETTSEEEEEEEETTTTEEEEEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCC-------------------------------EEEEEECCCeEEEEEccCCCcceEEEEec
Confidence            34468999999999999753                               57888999999999753        1234


Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      +|.++|++++|+|+++.+|++|+.||.|++|++..........       ..+........+.+++..++++    +.++
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~~  122 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT-------NNEANLGICRICKYGDDKLIAA----SWDG  122 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB-------SCCCCSCEEEEEEETTTEEEEE----ETTS
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccc-------cccccccccccccccccccccc----cccc
Confidence            7999999999999767899999999999999998876544432       1333444556677788899998    9999


Q ss_pred             eEEEEecCCCCCceeEE-eecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          301 QISVLNLNKTKGRACVT-FLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      .+++||+.++....... ..... ........+.+.+ .+..+++++.|+.|++||+............  ..+...+.+
T Consensus       123 ~~~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~  198 (342)
T d1yfqa_         123 LIEVIDPRNYGDGVIAVKNLNSN-NTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE--SGLKYQIRD  198 (342)
T ss_dssp             EEEEECHHHHTTBCEEEEESCSS-SSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEEE--CSCSSCEEE
T ss_pred             ccceeeccccccceeeecccccc-cccceeeeeeeec-cCCceeeecCCCcEEEEecccCcccceeeee--cccccceee
Confidence            99999987653322222 22221 1223345666777 8889999999999999999887653222222  234445555


Q ss_pred             EEe-ccCCCEEEEEeCCCeEEEEECCCCCeeee----------------eccCccEEEEeecCCCCCceEEEEEcCCCeE
Q 009203          380 VAG-MQQKQIVLSAGADKRIIGFDAGVGRADFK----------------HQIESKCMSVLPNPCDFNLFMVQTGTPGRQL  442 (540)
Q Consensus       380 l~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v  442 (540)
                      ..+ ..++..+++++.||.+.+|+.........                ......+.+++|+|++   .+|++|+.||.|
T Consensus       199 ~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~---~~lasg~~Dg~v  275 (342)
T d1yfqa_         199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH---KFLYTAGSDGII  275 (342)
T ss_dssp             EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT---CCEEEEETTSCE
T ss_pred             eEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc---cEEEEECCCCEE
Confidence            555 45678999999999999999875432110                1123457789999988   689999999999


Q ss_pred             EEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEE
Q 009203          443 RLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKA  517 (540)
Q Consensus       443 ~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l  517 (540)
                      ++||+.+++....       +.. ...+..++|+|+|++|++++.|+.+++|....      ..+..|...|..+
T Consensus       276 ~vWD~~~~~~l~~-------~~~-~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~------~~~~~~~~~i~~~  336 (342)
T d1yfqa_         276 SCWNLQTRKKIKN-------FAK-FNEDSVVKIACSDNILCLATSDDTFKTNAAID------QTIELNASSIYII  336 (342)
T ss_dssp             EEEETTTTEEEEE-------CCC-CSSSEEEEEEECSSEEEEEEECTHHHHCSSSC------TTSCCCCCEEEEE
T ss_pred             EEEECCCCcEEEE-------ecC-CCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC------CCccCCCCeEEEE
Confidence            9999998775432       111 23455678888999999999999888876542      2445566666543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.9e-26  Score=226.85  Aligned_cols=322  Identities=9%  Similarity=0.036  Sum_probs=219.0

Q ss_pred             EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR  275 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~  275 (540)
                      +.+.+.|++|++||..     ..+.+| ..+..++|||| |++|++++.|++|++||+.+++.........   ..+|..
T Consensus        35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPD-Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~---~~~~~~  109 (426)
T d1hzua2          35 SVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIKI---GIEARS  109 (426)
T ss_dssp             EEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEEC---CSEEEE
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCC-CCEEEEEeCCCCEEEEEccCCceeEEEEEeC---CCCCcc
Confidence            5677889999999876     345666 45999999996 8999999999999999999887543322111   135666


Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC--------CcccceeEEEEeCCCCCEEEEEe-
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP--------HVKGIINSIIFLPWENPCFATGG-  346 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~p~~~~~l~s~~-  346 (540)
                      .+.+++|+|||++|+++.   ..++.+.+||..++   .+......+.        .+.+....+.+++ ++..++... 
T Consensus       110 ~~~s~~~spDG~~l~v~~---~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~  182 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGA---YWPPQFAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVK  182 (426)
T ss_dssp             EEECCSTTCTTTEEEEEE---EESSEEEEEETTTC---CEEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEET
T ss_pred             eEEeeeecCCCCEEEEee---cCCCeEEEEcCCcc---ceeEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEecC
Confidence            678888999999876651   58899999999986   3333333211        1223345566666 555554433 


Q ss_pred             cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCCCeeeeeccC---ccEEEEe
Q 009203          347 SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVGRADFKHQIE---SKCMSVL  422 (540)
Q Consensus       347 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~---~~~~~~~  422 (540)
                      ..+.+.+++......    .......+...+..+.|+|++++++++.. +..+.+++..+++.+......   .......
T Consensus       183 ~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (426)
T d1hzua2         183 ETGKVLLVNYKDIDN----LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN  258 (426)
T ss_dssp             TTTEEEEEECSSSSS----CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEE
T ss_pred             CCCeEEEEEeccccc----eeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceee
Confidence            345566666655442    22222347778999999999998887764 567999999988876543322   1111222


Q ss_pred             ecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEE-------EeCCCcEEEEe
Q 009203          423 PNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITS-------GSADPVIHLFD  495 (540)
Q Consensus       423 ~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s-------g~~dg~i~iwd  495 (540)
                      +...+......+..+.|+.+.+|+................+.+|...+..++|+|||++|++       ++.|++|+|||
T Consensus       259 ~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd  338 (426)
T d1hzua2         259 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  338 (426)
T ss_dssp             EEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred             eecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence            22222221344556678899999987654333222233456789999999999999999995       55688999999


Q ss_pred             ccCCCCcccccc---------cccccceeEEEEcCCCCEEE-EE----EcCCcEEEEeC
Q 009203          496 IRYSANKPSQSI---------RAHQKRVFKAVWHYSHPLLI-SI----SSDLNIGLHKI  540 (540)
Q Consensus       496 ~~~~~~~~~~~~---------~~h~~~i~~l~~s~~~~~l~-s~----~~dg~v~iw~l  540 (540)
                      +.+  ++...++         ..|...|.+++|||||++++ ++    +.+|.|+|||.
T Consensus       339 ~~t--~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         339 LKN--LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             TTC--TTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred             CCC--CCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence            987  4443332         34566799999999999664 43    35788999984

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.3e-26  Score=222.49  Aligned_cols=272  Identities=10%  Similarity=0.036  Sum_probs=195.3

Q ss_pred             EEecCCCCeEEEeccc---hhcccccCceEEEEEecCCCcEEEEEeCC--ceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203          201 VRTSASPATIHCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTSALD--GVIRLWQLQSRGSGASLLSTTDCLSPKHRR  275 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~  275 (540)
                      +++.+ .+.|.+|+..   .+..+|...|++++|+|| |++|++++.+  ..|++||..+++.. .+        ..|..
T Consensus        18 ~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spD-g~~l~~~~~~~g~~v~v~d~~~~~~~-~~--------~~~~~   86 (360)
T d1k32a3          18 IAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KF--------EENLG   86 (360)
T ss_dssp             EEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-EC--------CCCCC
T ss_pred             EEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCC-CCEEEEEEcCCCCEEEEEECCCCcEE-Ee--------eCCCc
Confidence            34433 4688888664   233489999999999997 7777766544  37999999876532 22        47889


Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe---------
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG---------  346 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---------  346 (540)
                      .|.+++|+|+|++|+++    +.++.+++|++.++   .....+..   +...+.+++|+| ++++|+.+.         
T Consensus        87 ~v~~~~~spdg~~l~~~----~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~  155 (360)
T d1k32a3          87 NVFAMGVDRNGKFAVVA----NDRFEIMTVDLETG---KPTVIERS---REAMITDFTISD-NSRFIAYGFPLKHGETDG  155 (360)
T ss_dssp             SEEEEEECTTSSEEEEE----ETTSEEEEEETTTC---CEEEEEEC---SSSCCCCEEECT-TSCEEEEEEEECSSTTCS
T ss_pred             eEEeeeeccccccccee----cccccccccccccc---ceeeeeec---ccccccchhhcc-ceeeeeeeccccccceee
Confidence            99999999999999999    99999999999976   33444443   456789999999 999998654         


Q ss_pred             -cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeee-------eec-----
Q 009203          347 -SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADF-------KHQ-----  413 (540)
Q Consensus       347 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~-----  413 (540)
                       .++.+++||+.+++.    ..+  ..+...+..++|+|+|+.|++++.++.+.+||........       ...     
T Consensus       156 ~~~~~~~v~d~~~~~~----~~~--~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  229 (360)
T d1k32a3         156 YVMQAIHVYDMEGRKI----FAA--TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS  229 (360)
T ss_dssp             CCEEEEEEEETTTTEE----EEC--SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred             ccccceeeeccccCce----eee--cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCc
Confidence             345689999998763    222  3367788999999999999999999999999875432210       000     


Q ss_pred             --------------------------------cCccEEEEe----------ecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          414 --------------------------------IESKCMSVL----------PNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       414 --------------------------------~~~~~~~~~----------~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                                                      .......+.          +.+.+....++++++.++.|++||+.+++
T Consensus       230 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  309 (360)
T d1k32a3         230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK  309 (360)
T ss_dssp             CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred             cccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe
Confidence                                            000111111          22222222344556678899999998765


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccc
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKR  513 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~  513 (540)
                      ..           .|.+.|.+++|||||++|++++.||.|++||+..  +....++..+..+
T Consensus       310 ~~-----------~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~--~~~~~~~~~d~~~  358 (360)
T d1k32a3         310 VT-----------EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK--PEDERTVETDKRP  358 (360)
T ss_dssp             EE-----------EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSC--TTSCEECCCCSSC
T ss_pred             EE-----------EecCCcCEEEECCCCCEEEEEECCCeEEEEECCC--CCcceEEEecccc
Confidence            32           2445689999999999999999999999999998  4555555444433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.7e-25  Score=219.61  Aligned_cols=313  Identities=10%  Similarity=0.001  Sum_probs=202.1

Q ss_pred             EEecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR  275 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~  275 (540)
                      +.+.+++++|.+||..     ..+..| ..+..++|||| |++|++++.||+|++||+.+++.........   ..+|.+
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpD-G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~---~~~~~~  109 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI---GSEARS  109 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEEC---CSEEEE
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCC-CCEEEEEcCCCCEEEEEeeCCCceEEEEEec---CCCCCC
Confidence            5788899999999876     335555 46999999996 9999999999999999998876432221110   124556


Q ss_pred             CceeEEEecCCCeE-EEEeecCCCCCeEEEEecCCCCCceeEEeecCC--------CCcccceeEEEEeCCCCCEE-EEE
Q 009203          276 WPEDIAWHPQGNSL-FSAHTADSGDSQISVLNLNKTKGRACVTFLDDK--------PHVKGIINSIIFLPWENPCF-ATG  345 (540)
Q Consensus       276 ~V~~~~~~~~~~~l-~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~p~~~~~l-~s~  345 (540)
                      .+.+.+|+|||++| +++    +.++.|++||..+++   .+..+...        ..+.+....+.++| ++..+ ++.
T Consensus       110 ~~~s~~~SpDG~~l~vs~----~~~~~v~i~d~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~  181 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGA----YWPPQYVIMDGETLE---PKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNV  181 (432)
T ss_dssp             EEECCSTTCTTTEEEEEE----EETTEEEEEETTTCC---EEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEE
T ss_pred             eEEecccCCCCCEEEEEc----CCCCeEEEEeCcccc---ceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEE
Confidence            67777889999986 555    789999999999873   33333221        12345577889999 66654 666


Q ss_pred             ecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECCCCCeeeeeccC------ccE
Q 009203          346 GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAGVGRADFKHQIE------SKC  418 (540)
Q Consensus       346 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~------~~~  418 (540)
                      ..++.|.+||..+.+.    ..+....+...+.+++|+|+|+++++++. ++.+.++|..+++.+......      ...
T Consensus       182 ~~~~~i~~~d~~~~~~----~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~  257 (432)
T d1qksa2         182 KETGKILLVDYTDLNN----LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG  257 (432)
T ss_dssp             TTTTEEEEEETTCSSE----EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred             ccCCeEEEEEccCCCc----ceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcc
Confidence            7789999999988653    12222235567889999999998777765 557999999887775443221      222


Q ss_pred             EEEeecCCCCCceEEEEE-cCCCeEEEEECCCCcceee-------eeccc------------------cccCccccCeEE
Q 009203          419 MSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQTEIH-------AFGWK------------------QESSESQSALIN  472 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~~-------~~~~~------------------~~~~~~~~~v~~  472 (540)
                      ..+.+...+   ...++. ..++.|.+|+.........       .+...                  ..+..|.....+
T Consensus       258 ~~~~~~~~g---~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~s  334 (432)
T d1qksa2         258 ANFVHPTFG---PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGS  334 (432)
T ss_dssp             EEEEETTTE---EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTC
T ss_pred             cceecCCCC---ceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeE
Confidence            233333222   233333 3477888887654321100       00000                  000111111222


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEE-----cCCcEEEEe
Q 009203          473 QSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISIS-----SDLNIGLHK  539 (540)
Q Consensus       473 ~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~-----~dg~v~iw~  539 (540)
                      +++ ||++.|++++.|+.+++|++..  +   ..+..|...|.+++|+|||++|+.+.     .+|.|.|||
T Consensus       335 v~v-pDg~~la~~s~d~~~k~w~~~~--~---~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         335 VAV-FDIKAMTGDGSDPEFKTLPIAE--W---AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             EEE-EEGGGCCCSSSCCCEEEECHHH--H---HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             EEE-EechhhcccccCCceEeccccc--c---cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            333 6666777777777777777654  2   23335677899999999999875554     468899998

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=2.2e-22  Score=187.46  Aligned_cols=263  Identities=9%  Similarity=0.078  Sum_probs=197.8

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEE-EEeecCCCCCeEEEEecCCCCCceeE
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLF-SAHTADSGDSQISVLNLNKTKGRACV  316 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~~~~~d~~i~vwd~~~~~~~~~~  316 (540)
                      ..++++.|++|.|||+.+++.+.++..         ...+..++|+|||++|+ ++    +.++.|.+||+.++   ..+
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~---------g~~p~~va~spdG~~l~v~~----~~~~~i~v~d~~t~---~~~   67 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPV---------GSNPMGAVISPDGTKVYVAN----AHSNDVSIIDTATN---NVI   67 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEEC---------SSSEEEEEECTTSSEEEEEE----GGGTEEEEEETTTT---EEE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEEC---------CCCceEEEEeCCCCEEEEEE----CCCCEEEEEECCCC---cee
Confidence            356778899999999999887666632         13467899999999875 55    78899999999986   556


Q ss_pred             EeecCCCCcccceeEEEEeCCCCCE-EEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEE-EeC
Q 009203          317 TFLDDKPHVKGIINSIIFLPWENPC-FATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLS-AGA  394 (540)
Q Consensus       317 ~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~  394 (540)
                      ..+..   + ..+..++|++ ++.. ++++..++.+.+|+..+++.   ...+   .+...+.++.|+|+|..++. +..
T Consensus        68 ~~~~~---~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~dg~~~~~~~~~  136 (301)
T d1l0qa2          68 ATVPA---G-SSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTV---AGTV---KTGKSPLGLALSPDGKKLYVTNNG  136 (301)
T ss_dssp             EEEEC---S-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEE---EEEE---ECSSSEEEEEECTTSSEEEEEETT
T ss_pred             eeeec---c-cccccccccc-ccccccccccccceeeeccccccee---eeec---cccccceEEEeecCCCeeeeeecc
Confidence            66554   2 3478999999 6665 45566778899999998764   2222   25566789999999988755 556


Q ss_pred             CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEE
Q 009203          395 DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQS  474 (540)
Q Consensus       395 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~  474 (540)
                      ++.+.+|+..++..............+.++|++.  .+++++..++.+.+|+..........        .....+..++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  206 (301)
T d1l0qa2         137 DKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGT--KVYVANFDSMSISVIDTVTNSVIDTV--------KVEAAPSGIA  206 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECCSSEEEEEECTTSS--EEEEEETTTTEEEEEETTTTEEEEEE--------ECSSEEEEEE
T ss_pred             ccceeeeeccccceeeecccCCCceEEEeecccc--ceeeecccccccccccccceeeeecc--------cccCCcceee
Confidence            8889999999998888777777788889998773  24444555677888888765532221        1234578899


Q ss_pred             EcCCCCEEEEEe---CCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEE-EEEEcCCcEEEEeC
Q 009203          475 WSPDGLYITSGS---ADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLL-ISISSDLNIGLHKI  540 (540)
Q Consensus       475 ~sp~g~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l-~s~~~dg~v~iw~l  540 (540)
                      |++++..++.++   .++.|++||+.+  ++.+..+..+ ..+.+++|+|||++| ++++.|+.|++||+
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t--~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGT--NKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTT--TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ccccccccccccccceeeeeeeeecCC--CeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence            999999887654   346899999997  6666666643 468999999999976 67778999999985

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=6.6e-23  Score=194.15  Aligned_cols=271  Identities=10%  Similarity=0.048  Sum_probs=193.1

Q ss_pred             cEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEE-EEeecCCCCCeEEEEecCCCCCcee
Q 009203          237 QLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLF-SAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       237 ~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      .+|++++.|++|+|||+.+++.+..+..      ..+...+.+++|+|||++++ ++    +.++.|.+||+.+++   .
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~------~~~~~~~~~i~~spDg~~l~v~~----~~~~~v~v~D~~t~~---~   68 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITI------ADAGPTPMVPMVAPGGRIAYATV----NKSESLVKIDLVTGE---T   68 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC------TTCTTCCCCEEECTTSSEEEEEE----TTTTEEEEEETTTCC---E
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEEC------CCCCCCccEEEECCCCCEEEEEE----CCCCeEEEEECCCCc---E
Confidence            5899999999999999999887766643      23345578999999999875 55    789999999999873   3


Q ss_pred             EEeecCC--CCcccceeEEEEeCCCCCEEEEEec------------CCcEEEEecCCCCCccccceeecccCCcceeEEE
Q 009203          316 VTFLDDK--PHVKGIINSIIFLPWENPCFATGGS------------DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       316 ~~~~~~~--~~~~~~v~~~~~~p~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~  381 (540)
                      +..+...  ..+...+..++|+| ++.+++++..            +..+.+||..++..   ...+   .+...+.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~---~~~~~~~~~~  141 (337)
T d1pbyb_          69 LGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---RKAF---EAPRQITMLA  141 (337)
T ss_dssp             EEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---EEEE---ECCSSCCCEE
T ss_pred             EEEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeE---EEec---cccCCceEEE
Confidence            3333221  11233466899999 9988887753            56788999998764   2222   2456688999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCC-------CCc--------------eEEEEEcCCC
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCD-------FNL--------------FMVQTGTPGR  440 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--------------~~l~~~~~dg  440 (540)
                      |+|+|+++++++.+  +.+||..+++...............+.|++       ...              .....+..++
T Consensus       142 ~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (337)
T d1pbyb_         142 WARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT  219 (337)
T ss_dssp             ECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred             EcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCc
Confidence            99999999998754  778999988765543332111111111111       000              0111223345


Q ss_pred             eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEc
Q 009203          441 QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWH  520 (540)
Q Consensus       441 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s  520 (540)
                      .+.+||..++......      ...+...+..+.++|++.+++.+  ++.|++||+.+  ++.+..+. +...+.+++|+
T Consensus       220 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~--~~~~~~~~-~~~~~~~~~~s  288 (337)
T d1pbyb_         220 GLLTMDLETGEMAMRE------VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK--NASIKRVP-LPHSYYSVNVS  288 (337)
T ss_dssp             EEEEEETTTCCEEEEE------EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT--TEEEEEEE-CSSCCCEEEEC
T ss_pred             cEEEEEcCCCcEEEEE------ecCCCcceEEEEecccceEEEEc--cccEEEEECCC--CcEEEEEc-CCCCEEEEEEC
Confidence            6889999877654432      23456678889999999998876  58899999998  66666664 56678999999


Q ss_pred             CCCCEEEEEEcCCcEEEEeC
Q 009203          521 YSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       521 ~~~~~l~s~~~dg~v~iw~l  540 (540)
                      |||++|++++.|+.|+|||+
T Consensus       289 ~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         289 TDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEET
T ss_pred             CCCCEEEEEeCCCcEEEEEC
Confidence            99999999999999999985

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=2.7e-23  Score=197.65  Aligned_cols=281  Identities=9%  Similarity=0.056  Sum_probs=196.9

Q ss_pred             EEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecC
Q 009203          229 LSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLN  308 (540)
Q Consensus       229 l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~  308 (540)
                      ++|++ ++++|++++.|++|.+||+.+++.+.++..       .|...+.+++|+|||++++++   +..++.|.+||+.
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~-------~~~~~p~~l~~spDG~~l~v~---~~~~~~v~~~d~~   70 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------PDKFGPGTAMMAPDNRTAYVL---NNHYGDIYGIDLD   70 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-------SSCCSSCEEEECTTSSEEEEE---ETTTTEEEEEETT
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEc-------CCCCCcceEEECCCCCEEEEE---ECCCCcEEEEeCc
Confidence            57888 599999999999999999999877666532       344567899999999987544   1788999999999


Q ss_pred             CCCCceeEEeecCC---CCcccceeEEEEeCCCCCEEEEEe------------cCCcEEEEecCCCCCccccceeecccC
Q 009203          309 KTKGRACVTFLDDK---PHVKGIINSIIFLPWENPCFATGG------------SDHAVVLWSERDAEDSWKPKALHRNLH  373 (540)
Q Consensus       309 ~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~  373 (540)
                      ++   ..+..+...   ..+...+..++|+| ++.++++++            .++.+.+||..++........   ...
T Consensus        71 t~---~~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~  143 (346)
T d1jmxb_          71 TC---KNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT---FPM  143 (346)
T ss_dssp             TT---EEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE---EEC
T ss_pred             cC---eeeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEe---eec
Confidence            87   333333221   11223467899999 998887765            367789999988764222221   113


Q ss_pred             CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCc-----------------------
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNL-----------------------  430 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  430 (540)
                      ...+..+.+++++.+++++   +.+.+||+.+++.+...........+.++|++...                       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (346)
T d1jmxb_         144 PRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK  220 (346)
T ss_dssp             CSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred             cCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCc
Confidence            3456667777777666542   45899999888876655444333333333332110                       


Q ss_pred             eEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          431 FMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       431 ~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      ..++++..++.+.+||+.++......      ...+...+..+.+++++.+++.+.. +.|.+||..+  ++.+..+. +
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~--~~~~~~~~-~  290 (346)
T d1jmxb_         221 QDPATADLLYGYLSVDLKTGKTHTQE------FADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQ--RKLIKAAN-L  290 (346)
T ss_dssp             ---CCCEEEEEEEEEETTTCCEEEEE------EEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTT--TEEEEEEE-C
T ss_pred             eeEeeccCCceEEEEECCCCceEEEE------eecccceeEEEEEeCCCCEEEEecC-CeEEEEECCC--CcEEEEEc-C
Confidence            12233444567888888877654432      2356678889999999988887754 5799999987  66666655 4


Q ss_pred             ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          511 QKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       511 ~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ...+.+++|+|||++|++++.|+.|+|||+
T Consensus       291 ~~~~~~va~s~DG~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         291 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             SSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            457999999999999999999999999995

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=6.1e-21  Score=177.48  Aligned_cols=268  Identities=13%  Similarity=0.112  Sum_probs=196.6

Q ss_pred             EecCCCCeEEEeccc-----hhcccccCceEEEEEecCCCcEE-EEEeCCceEEEEEcCCCCCcceeecccccCCCCCCC
Q 009203          202 RTSASPATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLF-VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRR  275 (540)
Q Consensus       202 ~~~~~d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l-~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~  275 (540)
                      .++..+++|.+||..     ..+.. ...+..++|+|| |++| ++++.++.|++||+.+++.+.++.        .| .
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spd-G~~l~v~~~~~~~i~v~d~~t~~~~~~~~--------~~-~   74 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVP--------AG-S   74 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEE--------CS-S
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCceeeeee--------cc-c
Confidence            456778899999865     12222 255789999997 6655 677789999999999988766653        22 2


Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEE-EEEecCCcEEEE
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCF-ATGGSDHAVVLW  354 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iw  354 (540)
                      .+..++|++++..++++.   ..++.+.+|+..++   .....+..    ...+.++.|+| ++..+ +++..++.+.+|
T Consensus        75 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~  143 (301)
T d1l0qa2          75 SPQGVAVSPDGKQVYVTN---MASSTLSVIDTTSN---TVAGTVKT----GKSPLGLALSP-DGKKLYVTNNGDKTVSVI  143 (301)
T ss_dssp             SEEEEEECTTSSEEEEEE---TTTTEEEEEETTTT---EEEEEEEC----SSSEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred             cccccccccccccccccc---cccceeeecccccc---eeeeeccc----cccceEEEeec-CCCeeeeeeccccceeee
Confidence            367899999998665541   77889999999876   44555543    34578999999 77765 556668889999


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEE
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  433 (540)
                      +..+...   ...+   .+...+..++++|++..+++++.+ +.+.+|+..................+.+++++.. .++
T Consensus       144 ~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~v  216 (301)
T d1l0qa2         144 NTVTKAV---INTV---SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTK-AYV  216 (301)
T ss_dssp             ETTTTEE---EEEE---ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSE-EEE
T ss_pred             eccccce---eeec---ccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccc-ccc
Confidence            9998764   1222   244568899999999988877765 6788888887777777777777888899988743 122


Q ss_pred             E-EEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE-EEEeCCCcEEEEeccCCCCccccccc
Q 009203          434 Q-TGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI-TSGSADPVIHLFDIRYSANKPSQSIR  508 (540)
Q Consensus       434 ~-~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~sg~~dg~i~iwd~~~~~~~~~~~~~  508 (540)
                      + .+..++.|++||+.+++.....        .+...+.+++|+|||++| ++++.|+.|++||+.+  ++.+.++.
T Consensus       217 ~~~~~~~~~v~v~D~~t~~~~~~~--------~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t--~~~~~~~~  283 (301)
T d1l0qa2         217 TNVDKYFNTVSMIDTGTNKITARI--------PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT--NTITATMA  283 (301)
T ss_dssp             EEECSSCCEEEEEETTTTEEEEEE--------ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEE
T ss_pred             ccccceeeeeeeeecCCCeEEEEE--------cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC--CeEEEEEe
Confidence            2 2244578999999987753321        123468999999999987 5777899999999998  66666664

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=1.5e-20  Score=184.33  Aligned_cols=283  Identities=10%  Similarity=-0.028  Sum_probs=189.0

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      +.++++.+.||+|+|||+.+++.+.++.        .| ..+..++|+|||++|+++    +.|+.|++||+.+++... 
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~--------~g-~~~~~vafSPDGk~l~~~----~~d~~v~vwd~~t~~~~~-   97 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVID--------TG-YAVHISRMSASGRYLLVI----GRDARIDMIDLWAKEPTK-   97 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEE--------CC-SSEEEEEECTTSCEEEEE----ETTSEEEEEETTSSSCEE-
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEe--------CC-CCeeEEEECCCCCEEEEE----eCCCCEEEEEccCCceeE-
Confidence            3456788899999999999998887773        33 358999999999999999    899999999999875422 


Q ss_pred             EEeecCCCCcccceeEEEEeCCCCCEE-EEEecCCcEEEEecCCCCCccccceee------cccCCcceeEEEeccCCCE
Q 009203          316 VTFLDDKPHVKGIINSIIFLPWENPCF-ATGGSDHAVVLWSERDAEDSWKPKALH------RNLHSSAVMGVAGMQQKQI  388 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~v~~l~~s~~~~~  388 (540)
                      ...+.....|.+.+.+++|+| +|+++ +++..++.+.+||..++..........      ...+......+.+++++..
T Consensus        98 ~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~  176 (426)
T d1hzua2          98 VAEIKIGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE  176 (426)
T ss_dssp             EEEEECCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred             EEEEeCCCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCE
Confidence            222232223556677888889 88876 555688999999999887421111000      0113344556666777766


Q ss_pred             EEEEeC-CCeEEEEECCCCCee--eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCc
Q 009203          389 VLSAGA-DKRIIGFDAGVGRAD--FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSE  465 (540)
Q Consensus       389 l~~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~  465 (540)
                      ++.... .+.+.+++......+  ...........+.++|++.  .++++...+..+.+++..++.......     ...
T Consensus       177 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~  249 (426)
T d1hzua2         177 FIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHR--YFMTAANNSNKVAVIDSKDRRLSALVD-----VGK  249 (426)
T ss_dssp             EEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSC--EEEEEETTCSEEEEEETTTTEEEEEEE-----CSS
T ss_pred             EEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCc--EEEeeeecccceeeeecccccEEEEec-----cCC
Confidence            655444 456666666655432  2345667788899999873  345556677889999999877543321     111


Q ss_pred             cccCeEEEEEcCCCC--E-EEEEeCCCcEEEEeccCCC-----CcccccccccccceeEEEEcCCCCEEEE-------EE
Q 009203          466 SQSALINQSWSPDGL--Y-ITSGSADPVIHLFDIRYSA-----NKPSQSIRAHQKRVFKAVWHYSHPLLIS-------IS  530 (540)
Q Consensus       466 ~~~~v~~~~~sp~g~--~-l~sg~~dg~i~iwd~~~~~-----~~~~~~~~~h~~~i~~l~~s~~~~~l~s-------~~  530 (540)
                      +........+...+.  . .++.+.|+.+.+|+.....     .+....+.+|...+..++|+||+++|++       ++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~  329 (426)
T d1hzua2         250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR  329 (426)
T ss_dssp             CCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHH
T ss_pred             cccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcc
Confidence            111222233332222  2 2234457777777765421     3456678899999999999999999994       56


Q ss_pred             cCCcEEEEeC
Q 009203          531 SDLNIGLHKI  540 (540)
Q Consensus       531 ~dg~v~iw~l  540 (540)
                      .|++|+|||+
T Consensus       330 ~~~tv~vwd~  339 (426)
T d1hzua2         330 ISQSVAVFDL  339 (426)
T ss_dssp             HHTCEEEEET
T ss_pred             cCCEEEEEEC
Confidence            7899999985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.7e-19  Score=170.27  Aligned_cols=283  Identities=11%  Similarity=0.085  Sum_probs=190.8

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEE
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVT  317 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~  317 (540)
                      .+++++.|++|++|++........+..      ..|.+.|..++|+|||++|+++   +..|+.|.+|++..........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~------~~~~~~v~~la~spDG~~L~v~---~~~d~~i~~~~i~~~~~~~~~~   76 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQV------VDVPGQVQPMVVSPDKRYLYVG---VRPEFRVLAYRIAPDDGALTFA   76 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEE------EECSSCCCCEEECTTSSEEEEE---ETTTTEEEEEEECTTTCCEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEE------EcCCCCEeEEEEeCCCCEEEEE---ECCCCeEEEEEEeCCCCcEEEe
Confidence            457788999999999986554332221      1466779999999999998655   1678999999998654322222


Q ss_pred             eecCCCCcccceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-C
Q 009203          318 FLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-D  395 (540)
Q Consensus       318 ~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-d  395 (540)
                      ...   .+...+..++|+| ++++|++++. ++.|.+|+......   ........+...+.++.++|+++++++++. +
T Consensus        77 ~~~---~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~  149 (333)
T d1ri6a_          77 AES---ALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLP---VGVVDVVEGLDGCHSANISPDNRTLWVPALKQ  149 (333)
T ss_dssp             EEE---ECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEE---EEEEEEECCCTTBCCCEECTTSSEEEEEEGGG
T ss_pred             eec---ccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccc---eecccccCCCccceEEEeeecceeeecccccc
Confidence            111   1234578899999 9998888875 67899998877653   222222346677889999999998887775 5


Q ss_pred             CeEEEEECCCCCeeee-------eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeecc---ccccCc
Q 009203          396 KRIIGFDAGVGRADFK-------HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGW---KQESSE  465 (540)
Q Consensus       396 g~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~---~~~~~~  465 (540)
                      ..+.+|+.........       .........+.+++.+.  ..+.+....+...+|+.............   ......
T Consensus       150 ~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  227 (333)
T d1ri6a_         150 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ--YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS  227 (333)
T ss_dssp             TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS--EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred             ceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccce--eEEeeccccCceEEEeecccccceeeeeeeeeeecCCC
Confidence            5799999876544221       22334556788888763  34556667788888887654432221110   011122


Q ss_pred             cccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccc---cccccceeEEEEcCCCCEEEEEE-cCCcEEEEeC
Q 009203          466 SQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSI---RAHQKRVFKAVWHYSHPLLISIS-SDLNIGLHKI  540 (540)
Q Consensus       466 ~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~---~~h~~~i~~l~~s~~~~~l~s~~-~dg~v~iw~l  540 (540)
                      .......+++++++++++.. ..++.+.+|++...  .....+   ..+...+.+++|+|||++|++++ .++.|++|++
T Consensus       228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSED--GSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT--SCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             ccccceeEEEecccCceeeecccCCeEEEEEEcCC--CCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            34567788999999976654 56788999999863  222222   22345678999999999877665 5689999964

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=9.7e-21  Score=179.03  Aligned_cols=274  Identities=10%  Similarity=0.053  Sum_probs=187.2

Q ss_pred             EEecCCCCeEEEeccc-----hhcc--cccCceEEEEEecCCCcEE-EEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVSS--LHKRKLRSLSLNPVNEQLF-VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK  272 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~~--~h~~~V~~l~~spd~~~~l-~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  272 (540)
                      +.+++.|.+|.+||..     ..+.  .+...+.+++|+|| |++| ++++.++.|.+||+.+++....+.....   ..
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD-g~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~---~~   79 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---EE   79 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---TE
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCC-CCEEEEEECCCCeEEEEECCCCcEEEEEecCCC---cc
Confidence            5567789999999876     2233  34566889999997 6665 6778899999999999887666543321   12


Q ss_pred             CCCCceeEEEecCCCeEEEEeec--------CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTA--------DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFAT  344 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~--------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  344 (540)
                      +...+..++|+|++++++++...        ...+..+.+||..++   .....+..    ...+.+++|+| ++.++++
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~----~~~~~~~~~s~-dg~~l~~  151 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAFEA----PRQITMLAWAR-DGSKLYG  151 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEEC----CSSCCCEEECT-TSSCEEE
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC---eEEEeccc----cCCceEEEEcC-CCCEEEE
Confidence            33456789999999999887211        015678999999986   44555543    34588899999 9999988


Q ss_pred             EecCCcEEEEecCCCCCccccceeecccCCcceeEEEecc------------------------CCCEEEEEeCCCeEEE
Q 009203          345 GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQ------------------------QKQIVLSAGADKRIIG  400 (540)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~------------------------~~~~l~~~~~dg~i~i  400 (540)
                      ++.  .+.+||..+++.......     + .......+.+                        +...+..+..++.+.+
T Consensus       152 ~~~--~~~~~d~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (337)
T d1pbyb_         152 LGR--DLHVMDPEAGTLVEDKPI-----Q-SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT  223 (337)
T ss_dssp             ESS--SEEEEETTTTEEEEEECS-----T-TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred             EcC--CcceeeeecCcEEEEeec-----C-CccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEE
Confidence            864  478899988764211110     0 0001111111                        1111222233556999


Q ss_pred             EECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC
Q 009203          401 FDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD  478 (540)
Q Consensus       401 wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  478 (540)
                      ||..++.....  .........+.++|++   .+++.+  ++.|++||+.+++.....        .+...+.+++|+||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~i~v~d~~~~~~~~~~--------~~~~~~~~~~~s~d  290 (337)
T d1pbyb_         224 MDLETGEMAMREVRIMDVFYFSTAVNPAK---TRAFGA--YNVLESFDLEKNASIKRV--------PLPHSYYSVNVSTD  290 (337)
T ss_dssp             EETTTCCEEEEEEEECSSCEEEEEECTTS---SEEEEE--ESEEEEEETTTTEEEEEE--------ECSSCCCEEEECTT
T ss_pred             EEcCCCcEEEEEecCCCcceEEEEecccc---eEEEEc--cccEEEEECCCCcEEEEE--------cCCCCEEEEEECCC
Confidence            99998876543  3344566677788876   455544  589999999988754432        23456899999999


Q ss_pred             CCEEEEEeCCCcEEEEeccCCCCcccccccc
Q 009203          479 GLYITSGSADPVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       479 g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~  509 (540)
                      |++|++++.||.|+|||..+  .+.+.++..
T Consensus       291 G~~l~v~~~~~~i~v~D~~t--~~~v~~i~~  319 (337)
T d1pbyb_         291 GSTVWLGGALGDLAAYDAET--LEKKGQVDL  319 (337)
T ss_dssp             SCEEEEESBSSEEEEEETTT--CCEEEEEEC
T ss_pred             CCEEEEEeCCCcEEEEECCC--CcEEEEEEC
Confidence            99999999999999999998  676666653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=1.3e-19  Score=177.26  Aligned_cols=200  Identities=12%  Similarity=-0.003  Sum_probs=146.5

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      .-++++.+.||+|.|||..+++.+..+.        .| ..+..++|+|||++|+++    +.|+.|.+||+.+++... 
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~--------~g-~~~~~v~fSpDG~~l~~~----s~dg~v~~~d~~t~~~~~-   97 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLD--------TG-YAVHISRLSASGRYLFVI----GRDGKVNMIDLWMKEPTT-   97 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEE--------CS-SCEEEEEECTTSCEEEEE----ETTSEEEEEETTSSSCCE-
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEe--------CC-CCeeEEEECCCCCEEEEE----cCCCCEEEEEeeCCCceE-
Confidence            3446888999999999999999888773        23 358999999999999999    899999999998875422 


Q ss_pred             EEeecCCCCcccceeEEEEeCCCCCEE-EEEecCCcEEEEecCCCCCccccceee------cccCCcceeEEEeccCCCE
Q 009203          316 VTFLDDKPHVKGIINSIIFLPWENPCF-ATGGSDHAVVLWSERDAEDSWKPKALH------RNLHSSAVMGVAGMQQKQI  388 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~v~~l~~s~~~~~  388 (540)
                      ...+.....|.+.+.+..|+| ||++| ++++.++.|++||..+++.........      ...+......+.++|+|..
T Consensus        98 ~~~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~  176 (432)
T d1qksa2          98 VAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE  176 (432)
T ss_dssp             EEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred             EEEEecCCCCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE
Confidence            223332223455677777888 88875 788889999999999987522111100      0124566778899999987


Q ss_pred             E-EEEeCCCeEEEEECCCCCeee--eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          389 V-LSAGADKRIIGFDAGVGRADF--KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       389 l-~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      + ++...++.|.+||..+++...  ..........+.++|++.  .+++++..++.+.++|..+...
T Consensus       177 ~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~--~~~va~~~~~~v~v~d~~~~~~  241 (432)
T d1qksa2         177 FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR--YFITAANARNKLVVIDTKEGKL  241 (432)
T ss_dssp             EEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC--EEEEEEGGGTEEEEEETTTTEE
T ss_pred             EEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCC--EEEEeccccceEEEeecccceE
Confidence            6 456668999999998877543  345566778899999982  2445555667899999987653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.8e-18  Score=160.79  Aligned_cols=278  Identities=9%  Similarity=0.102  Sum_probs=186.8

Q ss_pred             EEecCCCCeEEEeccc-----hhc--ccccCceEEEEEecCCCcEE-EEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203          201 VRTSASPATIHCHTSN-----HVS--SLHKRKLRSLSLNPVNEQLF-VTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK  272 (540)
Q Consensus       201 ~~~~~~d~~i~~~~~~-----~~~--~~h~~~V~~l~~spd~~~~l-~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  272 (540)
                      ..+++.+.+|++|+..     .++  ..|.+.|.+|+|+|| |++| +++..|+.|++|++.......++....     .
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spD-G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~-----~   80 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-----A   80 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-----E
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEeeec-----c
Confidence            4567789999999753     222  378899999999997 7777 455568999999998776544443322     2


Q ss_pred             CCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-CCcE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-DHAV  351 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i  351 (540)
                      +...+..++|+|||++|+++.   ..++.|.+|+..............    +...+.++.++| +++++++++. +..|
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~---~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~v~~s~-d~~~~~~~~~~~~~i  152 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGS---YNAGNVSVTRLEDGLPVGVVDVVE----GLDGCHSANISP-DNRTLWVPALKQDRI  152 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEE---TTTTEEEEEEEETTEEEEEEEEEC----CCTTBCCCEECT-TSSEEEEEEGGGTEE
T ss_pred             cCCCceEEEEcCCCCEEeecc---cCCCceeeeccccccceecccccC----CCccceEEEeee-cceeeecccccccee
Confidence            334567899999999988871   467899999987652222222222    345688899999 8888777664 4679


Q ss_pred             EEEecCCCCCccccce-eecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeee----e-------eccCccE
Q 009203          352 VLWSERDAEDSWKPKA-LHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADF----K-------HQIESKC  418 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~----~-------~~~~~~~  418 (540)
                      .+|+............ ............++|++++..++... ..+...+|+........    .       .......
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (333)
T d1ri6a_         153 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA  232 (333)
T ss_dssp             EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred             eEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccc
Confidence            9999877543111111 11123445678899999998877655 45678888865432211    1       1122445


Q ss_pred             EEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe-CCCcEEEEecc
Q 009203          419 MSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS-ADPVIHLFDIR  497 (540)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~-~dg~i~iwd~~  497 (540)
                      ..+.+++++.  .+++++..++.+.+|++............    ......+.+++|+|||++|++++ .++.|.+|+++
T Consensus       233 ~~~~~s~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         233 ADIHITPDGR--HLYACDRTASLITVFSVSEDGSVLSKEGF----QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEEEECTTSS--EEEEEETTTTEEEEEEECTTSCCEEEEEE----EECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             eeEEEecccC--ceeeecccCCeEEEEEEcCCCCEEEEEEE----eCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            6677888763  36677788899999999876544433221    12334678899999999987665 56889999776


Q ss_pred             C
Q 009203          498 Y  498 (540)
Q Consensus       498 ~  498 (540)
                      .
T Consensus       307 ~  307 (333)
T d1ri6a_         307 G  307 (333)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=2e-19  Score=170.43  Aligned_cols=281  Identities=11%  Similarity=0.054  Sum_probs=185.1

Q ss_pred             eEEecCCCCeEEEeccc-----hhcc-cccCceEEEEEecCCCcE-EEEEeCCceEEEEEcCCCCCcceeecccccCCCC
Q 009203          200 LVRTSASPATIHCHTSN-----HVSS-LHKRKLRSLSLNPVNEQL-FVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPK  272 (540)
Q Consensus       200 ~~~~~~~d~~i~~~~~~-----~~~~-~h~~~V~~l~~spd~~~~-l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  272 (540)
                      .+++++.|.+|.+||..     ..+. .|...+.+++|+|| |++ +++++.++.|.+||+.+++....+......  ..
T Consensus        10 ~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spD-G~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~--~~   86 (346)
T d1jmxb_          10 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP--GE   86 (346)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEESCCST--TE
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCC-CCEEEEEECCCCcEEEEeCccCeeeeeecccccc--cc
Confidence            46778889999999876     2233 45677899999997 655 467778999999999998776555432211  12


Q ss_pred             CCCCceeEEEecCCCeEEEEeec--------CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEE
Q 009203          273 HRRWPEDIAWHPQGNSLFSAHTA--------DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFAT  344 (540)
Q Consensus       273 h~~~V~~~~~~~~~~~l~s~~~~--------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  344 (540)
                      +...+..++|+|||++++++...        ...++.+.+||..++.....+.....    ...+..+.+++ ++.++++
T Consensus        87 ~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~  161 (346)
T d1jmxb_          87 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM----PRQVYLMRAAD-DGSLYVA  161 (346)
T ss_dssp             EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC----CSSCCCEEECT-TSCEEEE
T ss_pred             cCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec----cCceEEEEecC-CCEEEEe
Confidence            33456789999999988876211        02578899999887643333332221    23355666766 6666554


Q ss_pred             EecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCC--------------------------EEEEEeCCCeE
Q 009203          345 GGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQ--------------------------IVLSAGADKRI  398 (540)
Q Consensus       345 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~--------------------------~l~~~~~dg~i  398 (540)
                         ++.+.+|++.+++...   .+.   .......+.++|++.                          .++++..++.+
T Consensus       162 ---~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (346)
T d1jmxb_         162 ---GPDIYKMDVKTGKYTV---ALP---LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  232 (346)
T ss_dssp             ---SSSEEEECTTTCCEEE---EEC---STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             ---CCcceEEEccCCCEEE---EEe---cCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceE
Confidence               3568899998876421   111   112223333333332                          23334445668


Q ss_pred             EEEECCCCCeeee--eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEc
Q 009203          399 IGFDAGVGRADFK--HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS  476 (540)
Q Consensus       399 ~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  476 (540)
                      .+||+.++.....  ...........+++++.   +++.+. ++.|.+||..+++.....        .+...+.+++|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~v~v~d~~~~~~~~~~--------~~~~~~~~va~s  300 (346)
T d1jmxb_         233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDP---NQIYGV-LNRLAKYDLKQRKLIKAA--------NLDHTYYCVAFD  300 (346)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCT---TEEEEE-ESEEEEEETTTTEEEEEE--------ECSSCCCEEEEC
T ss_pred             EEEECCCCceEEEEeecccceeEEEEEeCCCC---EEEEec-CCeEEEEECCCCcEEEEE--------cCCCCEEEEEEc
Confidence            8899888776443  33455667778887763   344443 468999999987754321        123468899999


Q ss_pred             CCCCEEEEEeCCCcEEEEeccCCCCcccccccccc
Q 009203          477 PDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQ  511 (540)
Q Consensus       477 p~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~  511 (540)
                      |||++|++++.||.|+|||+.+  .+.+.++..+.
T Consensus       301 ~DG~~l~v~~~d~~v~v~D~~t--~~~i~~i~~p~  333 (346)
T d1jmxb_         301 KKGDKLYLGGTFNDLAVFNPDT--LEKVKNIKLPG  333 (346)
T ss_dssp             SSSSCEEEESBSSEEEEEETTT--TEEEEEEECSS
T ss_pred             CCCCEEEEEeCCCcEEEEECcc--CCEEEEEECCC
Confidence            9999999999999999999998  77777776443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.80  E-value=2.3e-17  Score=158.24  Aligned_cols=290  Identities=9%  Similarity=-0.135  Sum_probs=190.2

Q ss_pred             ccccCceEEEEEecCCCcEEEEE-----eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203          220 SLHKRKLRSLSLNPVNEQLFVTS-----ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT  294 (540)
Q Consensus       220 ~~h~~~V~~l~~spd~~~~l~tg-----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~  294 (540)
                      .+|.+++.+++++|| ++.++..     +.++.|.+||..+++.+.++.        .+.  ...++|+|||++|+++..
T Consensus        17 ~~~~~p~~~~a~spd-g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~--------~~~--~~~~a~SpDG~~l~va~~   85 (373)
T d2madh_          17 GAADGPTNDEAPGAD-GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN--------GGF--LPNPVAAHSGSEFALAST   85 (373)
T ss_pred             ccCCCCccccccCCC-CCEEEEEcccccCCCceEEEEECCCCCEEEEEe--------CCC--CccEEEcCCCCEEEEEee
Confidence            468899999999997 6655543     234679999999988776653        222  236999999999998732


Q ss_pred             c------CCCCCeEEEEecCCCCCceeEEeecCCCCc----ccceeEEEEeCCCCCEEEEEe--cCCcEEEEecCCCCCc
Q 009203          295 A------DSGDSQISVLNLNKTKGRACVTFLDDKPHV----KGIINSIIFLPWENPCFATGG--SDHAVVLWSERDAEDS  362 (540)
Q Consensus       295 ~------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~  362 (540)
                      .      +..++.|.+||..+++   .+..+......    ......+.|++ ++..++...  .++.+.+|+....+. 
T Consensus        86 ~~~~~~~~~~~~~v~v~D~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~-  160 (373)
T d2madh_          86 SFSRIAKGKRTDYVEVFDPVTFL---PIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSD-  160 (373)
T ss_pred             cCCcccccccceEEEEEECCCCc---EEEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeE-
Confidence            1      1346889999999873   33333321110    11235678888 777655443  456788888877642 


Q ss_pred             cccceeecccCCcceeEEEeccCCCEE-EEEeCCCeEEEEECCCCCeeeeecc-------CccEEEEeecCCCCCceEEE
Q 009203          363 WKPKALHRNLHSSAVMGVAGMQQKQIV-LSAGADKRIIGFDAGVGRADFKHQI-------ESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       363 ~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~  434 (540)
                           .   .+.....++.++|+|+.+ ++.+.|+.+.+||...+........       ........+.+.+    .++
T Consensus       161 -----~---~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  228 (373)
T d2madh_         161 -----D---QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG----RIV  228 (373)
T ss_pred             -----E---EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc----eEE
Confidence                 1   134456788999998755 6788899999999988776543221       1223344455543    556


Q ss_pred             EEcCCCeEEEEECCCCcceeeee-ccc--c--ccCccccCeEEEEEcCCCCEEE----------EEeCCCcEEEEeccCC
Q 009203          435 TGTPGRQLRLYDIRLRQTEIHAF-GWK--Q--ESSESQSALINQSWSPDGLYIT----------SGSADPVIHLFDIRYS  499 (540)
Q Consensus       435 ~~~~dg~v~i~d~~~~~~~~~~~-~~~--~--~~~~~~~~v~~~~~sp~g~~l~----------sg~~dg~i~iwd~~~~  499 (540)
                      ..+.++.+.+|+........... ...  .  ...........+++++++..++          +...++.+.+||..+ 
T Consensus       229 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-  307 (373)
T d2madh_         229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-  307 (373)
T ss_pred             EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC-
Confidence            66778999999988765322111 000  0  0000112334456666665544          445567899999987 


Q ss_pred             CCcccccccccccceeEEEEcCCCC--EEEEEEcCCcEEEEeC
Q 009203          500 ANKPSQSIRAHQKRVFKAVWHYSHP--LLISISSDLNIGLHKI  540 (540)
Q Consensus       500 ~~~~~~~~~~h~~~i~~l~~s~~~~--~l~s~~~dg~v~iw~l  540 (540)
                       ++.+..+. +...+.+++|+|||+  ++++++.|+.|+|||+
T Consensus       308 -~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         308 -GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             -CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence             66666665 556789999999998  4578899999999995

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=2.1e-16  Score=151.37  Aligned_cols=289  Identities=8%  Similarity=-0.070  Sum_probs=183.4

Q ss_pred             CCeEEEeccc-----hhcccccCceEEEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCCC
Q 009203          207 PATIHCHTSN-----HVSSLHKRKLRSLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLSP  271 (540)
Q Consensus       207 d~~i~~~~~~-----~~~~~h~~~V~~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~  271 (540)
                      ...+.+||..     ..+.++..  ..++|+|| |++|++++          .++.|.+||..+++....+........ 
T Consensus        46 ~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpD-G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~-  121 (373)
T d2madh_          46 IIQQWVLDAGSGSILGHVNGGFL--PNPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-  121 (373)
T ss_pred             CceEEEEECCCCCEEEEEeCCCC--ccEEEcCC-CCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCccee-
Confidence            3455566543     12334433  37999997 78887764          457899999999887655532211100 


Q ss_pred             CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcE
Q 009203          272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAV  351 (540)
Q Consensus       272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  351 (540)
                      .-......+.|+++++.++....  ..++.+.+|+..+.   ......       ....++.|+|.....+++.+.|+.+
T Consensus       122 ~~~~~~~~~~~s~dg~~~~v~~~--~~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~s~~g~~~~v~~~~dg~~  189 (373)
T d2madh_         122 DVGPYSWMNANTPNNADLLFFQF--AAGPAVGLVVQGGS---SDDQLL-------SSPTCYHIHPGAPSTFYLLCAQGGL  189 (373)
T ss_pred             EeccCCCcEEEEeCCCcEEEEEE--cCCCceEEeeccCC---eEEEEe-------ccceeEEEecCCCcEEEEEcCCCeE
Confidence            00112356899999997766521  45678899998864   223222       3367889999334456788999999


Q ss_pred             EEEecCCCCCccccceeec-ccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------------Ccc
Q 009203          352 VLWSERDAEDSWKPKALHR-NLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-------------ESK  417 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------~~~  417 (540)
                      .+|+...+........... .+.......+.+.+++. ++..+.++.+.+|+...+........             ...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (373)
T d2madh_         190 AKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGG  268 (373)
T ss_pred             EEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCc
Confidence            9999988765222111111 11222334455665554 45566788999999887654322111             111


Q ss_pred             EEEEeecCCCCC-------ceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE--EEEEeCC
Q 009203          418 CMSVLPNPCDFN-------LFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY--ITSGSAD  488 (540)
Q Consensus       418 ~~~~~~~~~~~~-------~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~--l~sg~~d  488 (540)
                      ...+.+++++..       ...++....++.+.+||..+++.....        .+...+.+++|+|||+.  +++++.|
T Consensus       269 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~--------~~~~~~~~~a~spDG~~~l~vt~~~d  340 (373)
T d2madh_         269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI--------SLGHDVDAISVAQDGGPDLYALSAGT  340 (373)
T ss_pred             ceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe--------cCCCCeeEEEECCCCCEEEEEEeCCC
Confidence            222333333311       124556677789999999988754422        24567899999999984  4688899


Q ss_pred             CcEEEEeccCCCCcccccccccccceeEEEEcCC
Q 009203          489 PVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       489 g~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~  522 (540)
                      +.|++||+.+  ++.+.++..+....+.|++.++
T Consensus       341 ~~v~v~D~~t--g~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         341 EVLHIYDAGA--GDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CeEEEEECCC--CCEEEEECCCCCCCcEEEEecC
Confidence            9999999998  7889999888777888877543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=4.8e-17  Score=154.70  Aligned_cols=288  Identities=10%  Similarity=0.009  Sum_probs=177.5

Q ss_pred             CCCCeEEEeccc---hhcccccCceEEEEEecCCCcEEEEE----------eCCceEEEEEcCCCCCcceeecccccCCC
Q 009203          205 ASPATIHCHTSN---HVSSLHKRKLRSLSLNPVNEQLFVTS----------ALDGVIRLWQLQSRGSGASLLSTTDCLSP  271 (540)
Q Consensus       205 ~~d~~i~~~~~~---~~~~~h~~~V~~l~~spd~~~~l~tg----------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  271 (540)
                      ..+.++.+||..   .+-.-+.+.+..++|+|| |++|++.          +.|+.|++||..+++....+....... .
T Consensus        25 ~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpD-g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~-~  102 (355)
T d2bbkh_          25 AAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADD-GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR-F  102 (355)
T ss_dssp             CSSEEEEEEETTTTEEEEEEEECSSCEEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-C
T ss_pred             CCcCeEEEEECCCCcEEEEEECCCCCceEEcCC-CCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce-e
Confidence            345567777654   111112234447999997 6666543          457899999999988766554332111 1


Q ss_pred             CCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCC----cccceeEEEEeCCCCCEEEEE-e
Q 009203          272 KHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPH----VKGIINSIIFLPWENPCFATG-G  346 (540)
Q Consensus       272 ~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~s~-~  346 (540)
                      ........++|++++++++.+..  +.+..+.+|+..++   ..+..+.....    ..+....+.+++ ++..++.. .
T Consensus       103 ~~~~~~~~~~~s~dg~~~~v~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~v~~~  176 (355)
T d2bbkh_         103 LVGTYPWMTSLTPDGKTLLFYQF--SPAPAVGVVDLEGK---AFKRMLDVPDCYHIFPTAPDTFFMHCR-DGSLAKVAFG  176 (355)
T ss_dssp             CBSCCGGGEEECTTSSEEEEEEC--SSSCEEEEEETTTT---EEEEEEECCSEEEEEEEETTEEEEEET-TSCEEEEECC
T ss_pred             ecCCCCceEEEecCCCeeEEecC--CCCceeeeeecCCC---cEeeEEecCCcceEeecCCcceEEEcC-CCCEEEEEec
Confidence            22344577999999998877621  45678999999886   44444432110    011223345555 44443332 2


Q ss_pred             cCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc------------
Q 009203          347 SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI------------  414 (540)
Q Consensus       347 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------  414 (540)
                      .++.+.+++.....          ..+...+....+.+++..++.++.++.+++|++..+........            
T Consensus       177 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (355)
T d2bbkh_         177 TEGTPEITHTEVFH----------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW  246 (355)
T ss_dssp             SSSCCEEEECCCCS----------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred             CCCeEEEEeccccc----------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeee
Confidence            33444444443332          12444566677888889999999999999999988765321110            


Q ss_pred             -CccEEEEeecCCCCCceEEEEEcC----------CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC--E
Q 009203          415 -ESKCMSVLPNPCDFNLFMVQTGTP----------GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL--Y  481 (540)
Q Consensus       415 -~~~~~~~~~~~~~~~~~~l~~~~~----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~  481 (540)
                       ......+.+++++.   .++....          ...|.+||..+++.....        .+...+.+++|+|||+  +
T Consensus       247 ~p~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~--------~~~~~~~~~a~spDG~~~l  315 (355)
T d2bbkh_         247 RPGGWQQVAYHRALD---RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF--------EMGHEIDSINVSQDEKPLL  315 (355)
T ss_dssp             EECSSSCEEEETTTT---EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE--------EEEEEECEEEECCSSSCEE
T ss_pred             eccceEEEEEeCCCC---eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe--------cCCCCEEEEEEcCCCCeEE
Confidence             01122355666652   3333221          247999999988754322        1234588999999998  4


Q ss_pred             EEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCC
Q 009203          482 ITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSH  523 (540)
Q Consensus       482 l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~  523 (540)
                      +++++.|+.|++||+.+  ++.+.++.++......+.+.++|
T Consensus       316 ~v~~~~d~~i~v~D~~t--g~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         316 YALSTGDKTLYIHDAES--GEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEETTTTEEEEEETTT--CCEEEEECCCCSSCCEEECCCCC
T ss_pred             EEEECCCCEEEEEECCC--CCEEEEEeCcCCCccEEEeCCCC
Confidence            56777899999999998  78888888776666666665543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=7.7e-17  Score=153.26  Aligned_cols=291  Identities=8%  Similarity=-0.103  Sum_probs=177.0

Q ss_pred             ceEEEEEecCCCcEEEEE-----eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec----
Q 009203          225 KLRSLSLNPVNEQLFVTS-----ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA----  295 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg-----~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~----  295 (540)
                      ++.-.+.+|| ++.++..     ..++.|.+||..+++.+.++..        +  .+..++|+|||++|+++...    
T Consensus         3 p~~~~a~spd-g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~--------g--~~~~~a~SpDg~~l~v~~~~~~~~   71 (355)
T d2bbkh_           3 PRILEAPAPD-ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--------G--FLPNPVVADDGSFIAHASTVFSRI   71 (355)
T ss_dssp             CCBCCCCCCC-TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--------C--SSCEEEECTTSSCEEEEEEEEEET
T ss_pred             CcEeEeeCCC-CCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC--------C--CCCceEEcCCCCEEEEEeCCCccc
Confidence            3444466897 6666554     3466799999999887666532        1  23479999999988875110    


Q ss_pred             --CCCCCeEEEEecCCCCCceeEEeecCCC-CcccceeEEEEeCCCCCEEEEEe--cCCcEEEEecCCCCCccccceeec
Q 009203          296 --DSGDSQISVLNLNKTKGRACVTFLDDKP-HVKGIINSIIFLPWENPCFATGG--SDHAVVLWSERDAEDSWKPKALHR  370 (540)
Q Consensus       296 --~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~  370 (540)
                        +..++.|.+||+.+++....+....... ........++|+| ++.+++.+.  .+..+.+|+..+++..   ..+..
T Consensus        72 ~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~  147 (355)
T d2bbkh_          72 ARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFK---RMLDV  147 (355)
T ss_dssp             TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEE---EEEEC
T ss_pred             cccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEe---eEEec
Confidence              1347899999999874322222211111 1122346789999 888877764  4578999999988642   22211


Q ss_pred             cc-----CCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEE
Q 009203          371 NL-----HSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRL  444 (540)
Q Consensus       371 ~~-----~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i  444 (540)
                      ..     .......+.+++++..++... .++.+.+++.........    .......+.+.+   ..++.++.++.+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~v  220 (355)
T d2bbkh_         148 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE----FLINHPAYSQKA---GRLVWPTYTGKIHQ  220 (355)
T ss_dssp             CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS----CBCSCCEEETTT---TEEEEEBTTSEEEE
T ss_pred             CCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceec----ceeeeccccCCC---CeEEEecCCCeEEE
Confidence            00     012233455666666555433 234455555443322111    111122333333   46778889999999


Q ss_pred             EECCCCcceeeeec-cc----cccCccccCeEEEEEcCCCCEEEEEeCC----------CcEEEEeccCCCCcccccccc
Q 009203          445 YDIRLRQTEIHAFG-WK----QESSESQSALINQSWSPDGLYITSGSAD----------PVIHLFDIRYSANKPSQSIRA  509 (540)
Q Consensus       445 ~d~~~~~~~~~~~~-~~----~~~~~~~~~v~~~~~sp~g~~l~sg~~d----------g~i~iwd~~~~~~~~~~~~~~  509 (540)
                      |++..+........ ..    ............+++++++..++....+          ..|.+||..+  ++.+..+. 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t--~~~~~~~~-  297 (355)
T d2bbkh_         221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--GERLAKFE-  297 (355)
T ss_dssp             EECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT--CCEEEEEE-
T ss_pred             EecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC--CcEEEEec-
Confidence            99987664321110 00    0000112234558899999988766543          3699999998  66676665 


Q ss_pred             cccceeEEEEcCCCC--EEEEEEcCCcEEEEeC
Q 009203          510 HQKRVFKAVWHYSHP--LLISISSDLNIGLHKI  540 (540)
Q Consensus       510 h~~~i~~l~~s~~~~--~l~s~~~dg~v~iw~l  540 (540)
                      +...+.+++|+|||+  ++++++.|+.|+|||+
T Consensus       298 ~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             EEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence            345689999999997  4567778999999985

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.62  E-value=1.3e-13  Score=136.14  Aligned_cols=282  Identities=11%  Similarity=0.069  Sum_probs=158.6

Q ss_pred             hcccccCceEEEEEecCCCcEEEEEeC---------CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCe
Q 009203          218 VSSLHKRKLRSLSLNPVNEQLFVTSAL---------DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNS  288 (540)
Q Consensus       218 ~~~~h~~~V~~l~~spd~~~~l~tg~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  288 (540)
                      .+.+|...|.++.|||| |++|+.++.         ++.+.|||+.+++. ..+        ..|...+..+.|+|||+.
T Consensus        56 ~~~~~~~~i~~~~~SpD-g~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l--------~~~~~~~~~~~~SPDG~~  125 (470)
T d2bgra1          56 TFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITE--------ERIPNNTQWVTWSPVGHK  125 (470)
T ss_dssp             TTTTSSSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCS--------SCCCTTEEEEEECSSTTC
T ss_pred             hhhhccCccceeEECCC-CCEEEEEECCcceeeeccCceEEEEECCCCcc-ccc--------ccCCccccccccccCcce
Confidence            46778889999999997 888887753         56789999998753 222        467788999999999999


Q ss_pred             EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC---------------CcccceeEEEEeCCCCCEEEEEecCCc-EE
Q 009203          289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP---------------HVKGIINSIIFLPWENPCFATGGSDHA-VV  352 (540)
Q Consensus       289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~  352 (540)
                      ||..     .++.+.+|+..++..   .+......               ...+....+.|+| ||+.|+....|.+ +.
T Consensus       126 ia~~-----~~~~l~~~~~~~g~~---~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~  196 (470)
T d2bgra1         126 LAYV-----WNNDIYVKIEPNLPS---YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVP  196 (470)
T ss_dssp             EEEE-----ETTEEEEESSTTSCC---EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCC
T ss_pred             eeEe-----ecccceEEECCCCce---eeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEecCCcCc
Confidence            9986     678899999987743   22221100               0123346688999 9999998765432 33


Q ss_pred             -----------------------------------EEecCCCCCccccceeec------ccCCcceeEEEeccCCCEEEE
Q 009203          353 -----------------------------------LWSERDAEDSWKPKALHR------NLHSSAVMGVAGMQQKQIVLS  391 (540)
Q Consensus       353 -----------------------------------iwd~~~~~~~~~~~~~~~------~~~~~~v~~l~~s~~~~~l~~  391 (540)
                                                         +|++..+...........      ......+..+.|.+++..++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  276 (470)
T d2bgra1         197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ  276 (470)
T ss_dssp             EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred             eEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence                                               233332221111100000      012234567788887776554


Q ss_pred             Ee-CCC-----eEEEEECCCCCeeeee-------ccCc-----cEEEEeecCCCCCceEEEEEcCCCeEEEE--ECCCCc
Q 009203          392 AG-ADK-----RIIGFDAGVGRADFKH-------QIES-----KCMSVLPNPCDFNLFMVQTGTPGRQLRLY--DIRLRQ  451 (540)
Q Consensus       392 ~~-~dg-----~i~iwd~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~l~~~~~dg~v~i~--d~~~~~  451 (540)
                      .. ..+     .+..+|..++......       ....     ......+.+++ ...+++....+|...||  +.....
T Consensus       277 ~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~s~~dg~~~ly~~~~~g~~  355 (470)
T d2bgra1         277 WLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG-NSFYKIISNEEGYRHICYFQIDKKD  355 (470)
T ss_dssp             EEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS-SEEEEEEECTTSCEEEEEEETTCSC
T ss_pred             EeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecC-CCcEEEEeccCcCceeEEEeccCCc
Confidence            32 221     2344455555432211       0000     00111222222 22456677777765555  444333


Q ss_pred             ceeeeeccccccCccccCeEEEEEcCCCCEE-EEEeCCC----cEEEEeccCCCCc---cc-ccccccccceeEEEEcCC
Q 009203          452 TEIHAFGWKQESSESQSALINQSWSPDGLYI-TSGSADP----VIHLFDIRYSANK---PS-QSIRAHQKRVFKAVWHYS  522 (540)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~sg~~dg----~i~iwd~~~~~~~---~~-~~~~~h~~~i~~l~~s~~  522 (540)
                      .  .      .+..+...|..+ ++++++.+ +++..++    .-.||.+......   ++ ..+..|...+.+++||||
T Consensus       356 ~--~------~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpd  426 (470)
T d2bgra1         356 C--T------FITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKE  426 (470)
T ss_dssp             C--E------ESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTT
T ss_pred             e--e------eeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCC
Confidence            2  1      122334556665 33444443 4443322    2345555432122   22 234578888999999999


Q ss_pred             CCEEEE
Q 009203          523 HPLLIS  528 (540)
Q Consensus       523 ~~~l~s  528 (540)
                      |++++.
T Consensus       427 gky~~~  432 (470)
T d2bgra1         427 AKYYQL  432 (470)
T ss_dssp             SSEEEE
T ss_pred             CCEEEE
Confidence            998763

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.57  E-value=4e-14  Score=134.28  Aligned_cols=276  Identities=10%  Similarity=0.058  Sum_probs=173.0

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeeccccc----------------------CCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDC----------------------LSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~----------------------~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      .+++|+.+|.|++|++.+++.+.++......                      ....|.-......++|||++|++.   
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~---   89 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIN---   89 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEE---
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEE---
Confidence            4677778889999998887765554321100                      001233334445567999988665   


Q ss_pred             CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEE-EEEecCCcE------------------EEEec
Q 009203          296 DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCF-ATGGSDHAV------------------VLWSE  356 (540)
Q Consensus       296 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s~~~dg~i------------------~iwd~  356 (540)
                      +..+..|.++|+.++   ++...+..  .....+..++|+| +++.+ +++..+..+                  ..+|.
T Consensus        90 d~~~~rVavIDl~t~---k~~~ii~i--P~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2          90 DKANTRVARIRLDIM---KTDKITHI--PNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             ETTTTEEEEEETTTT---EEEEEEEC--TTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             cCCCCEEEEEECCCC---cEeeEEec--CCCCCccceEEec-cCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence            268899999999987   33443332  1234589999999 77642 333333333                  44677


Q ss_pred             CCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC-----------------------------------------
Q 009203          357 RDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD-----------------------------------------  395 (540)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-----------------------------------------  395 (540)
                      .+.+..++..      -......+.|+|+|+++++.+.+                                         
T Consensus       164 ~t~~v~~qI~------v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~  237 (441)
T d1qnia2         164 ETMDVAWQVI------VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS  237 (441)
T ss_dssp             TTCSEEEEEE------ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred             ccceeeEEEe------cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC
Confidence            7665422221      22457789999999998887643                                         


Q ss_pred             CeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee-eecccccc---CccccCeE
Q 009203          396 KRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH-AFGWKQES---SESQSALI  471 (540)
Q Consensus       396 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~-~~~~~~~~---~~~~~~v~  471 (540)
                      +.+.+++......+.....+.....+.++|++.  .+++++..+++|.+||+.+....+. .+.....+   ....-...
T Consensus       238 ~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGk--yl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgpl  315 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGK--YFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPL  315 (441)
T ss_dssp             CCCEEECSSSCSSEEEECCBSSCCCEEECTTSC--EEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEE
T ss_pred             CcEEEEcccCCceEEEEeCCCCccCceECCCCC--EEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcc
Confidence            233444444444444555555567788889883  3557788999999999875332100 00000000   11112345


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeccCC------C--Ccccccc-----cccccceeEEEEcCCCCEEEEEE
Q 009203          472 NQSWSPDGLYITSGSADPVIHLFDIRYS------A--NKPSQSI-----RAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       472 ~~~~sp~g~~l~sg~~dg~i~iwd~~~~------~--~~~~~~~-----~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      ..+|+++|..+.+...|..|..|++...      +  ...+..+     .+|...+.+..++|||++|++++
T Consensus       316 h~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         316 HTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            5689999999999999999999998621      0  1122222     58888888999999999999994

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=4.7e-14  Score=134.56  Aligned_cols=269  Identities=10%  Similarity=-0.043  Sum_probs=159.9

Q ss_pred             cccccCceEEEEEecCCCcEEEEEe----------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCe
Q 009203          219 SSLHKRKLRSLSLNPVNEQLFVTSA----------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNS  288 (540)
Q Consensus       219 ~~~h~~~V~~l~~spd~~~~l~tg~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~  288 (540)
                      +.++..+  .++|+|| |++|++.+          .|+.|++||..+++....+....... .........++|+|||++
T Consensus        62 ~~~~~~~--~~a~spD-g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~-~~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          62 SLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-FSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             EEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-CCBSCCTTSEEECTTSSC
T ss_pred             EeCCCCC--cceECCC-CCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce-ecccCCccceEECCCCCE
Confidence            3444443  5899997 77777654          47789999999988766654322111 111233457999999999


Q ss_pred             EEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccc-e
Q 009203          289 LFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPK-A  367 (540)
Q Consensus       289 l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~  367 (540)
                      |+++.   ..++.+.+||+.++   +....+...   ....    +.|.....++..+.||.+.+|++.......... .
T Consensus       138 l~va~---~~~~~v~~~d~~~~---~~~~~~~~~---~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~  204 (368)
T d1mdah_         138 LLFFL---FGSSAAAGLSVPGA---SDDQLTKSA---SCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA  204 (368)
T ss_dssp             EEEEE---CSSSCEEEEEETTT---EEEEEEECS---SCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred             EEEEe---CCCCeEEEEECCCC---cEeEEeecc---Ccce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeec
Confidence            98761   46799999999986   445544431   1111    112134566677778888888876554311100 0


Q ss_pred             eecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc-------------CccEEEEeecCCCCCceEEE
Q 009203          368 LHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI-------------ESKCMSVLPNPCDFNLFMVQ  434 (540)
Q Consensus       368 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~  434 (540)
                      .....+...+..+.+.+++..+.+.  ++.+++++...+........             ......+.+++++..  +++
T Consensus       205 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~--~~v  280 (368)
T d1mdah_         205 QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG--IMI  280 (368)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE--EEE
T ss_pred             ccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCE--EEE
Confidence            0112244455667777777665543  45566777665544322111             011123455555532  222


Q ss_pred             EEcC--------CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE--EEEEeCCCcEEEEeccCCCCccc
Q 009203          435 TGTP--------GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY--ITSGSADPVIHLFDIRYSANKPS  504 (540)
Q Consensus       435 ~~~~--------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~--l~sg~~dg~i~iwd~~~~~~~~~  504 (540)
                      ....        ...|.+||..+++.....        .+...+.+++|+|||+.  ++++..|+.|++||..+  ++.+
T Consensus       281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~--------~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t--gk~~  350 (368)
T d1mdah_         281 LTVEHSRSCLAAAENTSSVTASVGQTSGPI--------SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS--DQDQ  350 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECC--------EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS--CEEE
T ss_pred             EecCCCceeecCCceEEEEECCCCcEeEEe--------cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC--CCEE
Confidence            2211        236999999988753321        23456889999999973  45777899999999998  7777


Q ss_pred             ccccccccceeEEEE
Q 009203          505 QSIRAHQKRVFKAVW  519 (540)
Q Consensus       505 ~~~~~h~~~i~~l~~  519 (540)
                      .++..... ...|++
T Consensus       351 ~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         351 SSVELDKG-PESLSV  364 (368)
T ss_dssp             EECCCCSC-CCEEEC
T ss_pred             EEEECCCC-CCEEEE
Confidence            77764432 344443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=2.4e-13  Score=129.52  Aligned_cols=289  Identities=8%  Similarity=-0.071  Sum_probs=168.2

Q ss_pred             cccCceEEEEEecCCCcEE---EEEeCCce--EEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec
Q 009203          221 LHKRKLRSLSLNPVNEQLF---VTSALDGV--IRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA  295 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l---~tg~~dg~--v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~  295 (540)
                      .+.++...++..+| ++..   ++...+|.  |.+||..+++.+.++.        ++.  ...++|+|||+.|+++...
T Consensus        17 ~~~g~~~~~a~~~~-~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~--------~~~--~~~~a~spDg~~i~~~~~~   85 (368)
T d1mdah_          17 ASDGSSCDHGPGAI-SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL--------GAF--LSLAVAGHSGSDFALASTS   85 (368)
T ss_dssp             CCCCCCBCCCCCCC-TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE--------ECT--TCEEEECTTSSCEEEEEEE
T ss_pred             ccCCCccccccCCC-CcceeEEeeccCCCcceEEEEeCCCCcEEEEEe--------CCC--CCcceECCCCCEEEEEccc
Confidence            44555666667775 5432   22344444  6666888877655543        222  2358999999999886321


Q ss_pred             ------CCCCCeEEEEecCCCCCceeEEeecCCC----CcccceeEEEEeCCCCCEEEEEe-cCCcEEEEecCCCCCccc
Q 009203          296 ------DSGDSQISVLNLNKTKGRACVTFLDDKP----HVKGIINSIIFLPWENPCFATGG-SDHAVVLWSERDAEDSWK  364 (540)
Q Consensus       296 ------~~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~  364 (540)
                            |..++.|.+||..+++   .+..+....    ........++|+| ||++|+++. .++.+.+||+.+++..  
T Consensus        86 ~~~~~~g~~d~~v~v~D~~t~~---~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~--  159 (368)
T d1mdah_          86 FARSAKGKRTDYVEVFDPVTFL---PIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDD--  159 (368)
T ss_dssp             ETTTTSSSEEEEEEEECTTTCC---EEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEE--
T ss_pred             CccccccccCCeEEEEECCCCc---EeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEe--
Confidence                  2457889999999873   333332111    1122345799999 888887765 5799999999998742  


Q ss_pred             cceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-------eccCccEEEEeecCCCCCceEEEEEc
Q 009203          365 PKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-------HQIESKCMSVLPNPCDFNLFMVQTGT  437 (540)
Q Consensus       365 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~  437 (540)
                       ..+..  +....  + +......++..+.||.+.+|++........       ...........+.+++   ..+.+  
T Consensus       160 -~~~~~--~~~~~--~-~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~--  228 (368)
T d1mdah_         160 -QLTKS--ASCFH--I-HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG---MLVWA--  228 (368)
T ss_dssp             -EEEEC--SSCCC--C-EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT---EEEEC--
T ss_pred             -EEeec--cCcce--E-ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc---EEEEe--
Confidence             22211  21111  1 111234555666777777777665433211       1112222344555554   33332  


Q ss_pred             CCCeEEEEECCCCcceeeeec-ccc----ccCccccCeEEEEEcCCCCEEEEEeCC---------CcEEEEeccCCCCcc
Q 009203          438 PGRQLRLYDIRLRQTEIHAFG-WKQ----ESSESQSALINQSWSPDGLYITSGSAD---------PVIHLFDIRYSANKP  503 (540)
Q Consensus       438 ~dg~v~i~d~~~~~~~~~~~~-~~~----~~~~~~~~v~~~~~sp~g~~l~sg~~d---------g~i~iwd~~~~~~~~  503 (540)
                      .++.++++++........... ...    ...........+++++++..++....+         ..|.+||..+  ++.
T Consensus       229 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t--~~~  306 (368)
T d1mdah_         229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--GQT  306 (368)
T ss_dssp             BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--CCE
T ss_pred             cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC--CcE
Confidence            345667777665443221100 000    000111223457899998887655322         3588999987  677


Q ss_pred             cccccccccceeEEEEcCCCC--EEEEEEcCCcEEEEeC
Q 009203          504 SQSIRAHQKRVFKAVWHYSHP--LLISISSDLNIGLHKI  540 (540)
Q Consensus       504 ~~~~~~h~~~i~~l~~s~~~~--~l~s~~~dg~v~iw~l  540 (540)
                      +..+. +...+.+++|+|||+  +++++..|+.|+|||.
T Consensus       307 ~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         307 SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            77766 445789999999997  3567778899999984

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.41  E-value=3.7e-11  Score=118.18  Aligned_cols=154  Identities=12%  Similarity=0.021  Sum_probs=106.0

Q ss_pred             EEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec-----CCCCCe
Q 009203          227 RSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA-----DSGDSQ  301 (540)
Q Consensus       227 ~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~-----~~~d~~  301 (540)
                      ..+.|.+| +.++..  .|+.+.+||+.+++....+...   ....|...|.++.|+|||++|+.++..     .+.++.
T Consensus        20 ~~~~W~~d-~~~~~~--~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          20 YSLRWISD-HEYLYK--QENNILVFNAEYGNSSVFLENS---TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCCEECSS-SEEEEE--SSSCEEEEETTTCCEEEEECTT---TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cCCEeCCC-CEEEEE--cCCcEEEEECCCCCEEEEEchh---hhhhccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence            35789995 776654  5788999999998754333211   114677889999999999999987321     133578


Q ss_pred             EEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee----c-------
Q 009203          302 ISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH----R-------  370 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~-------  370 (540)
                      +.+||+.++   . +..+..   +...+..+.|+| +|+.||... ++.+++|+..++..........    .       
T Consensus        94 ~~l~d~~~~---~-~~~l~~---~~~~~~~~~~SP-DG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~  164 (470)
T d2bgra1          94 YDIYDLNKR---Q-LITEER---IPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV  164 (470)
T ss_dssp             EEEEETTTT---E-ECCSSC---CCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred             EEEEECCCC---c-cccccc---CCcccccccccc-CcceeeEee-cccceEEECCCCceeeeeeccCCCccccccccee
Confidence            899999976   2 222332   456799999999 999999864 6789999999886411110000    0       


Q ss_pred             --ccCCcceeEEEeccCCCEEEEEeCC
Q 009203          371 --NLHSSAVMGVAGMQQKQIVLSAGAD  395 (540)
Q Consensus       371 --~~~~~~v~~l~~s~~~~~l~~~~~d  395 (540)
                        ....+....+.|||||+.|++...|
T Consensus       165 ~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         165 YEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             HHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eeeeecCCccccEECCCCCccceeEec
Confidence              0122345678899999999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.35  E-value=2.8e-10  Score=104.45  Aligned_cols=232  Identities=10%  Similarity=0.046  Sum_probs=158.6

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      ++..++++|||+++++.    ..+++|..|+....    ......    ..+.+.+++|.+ +++++++...++.+..|+
T Consensus        29 ~~e~iAv~pdG~l~vt~----~~~~~I~~i~p~g~----~~~~~~----~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~   95 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTN----HEVGEIVSITPDGN----QQIHAT----VEGKVSGLAFTS-NGDLVATGWNADSIPVVS   95 (302)
T ss_dssp             CEEEEEECTTSCEEEEE----TTTTEEEEECTTCC----EEEEEE----CSSEEEEEEECT-TSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEe----CCCCEEEEEeCCCC----EEEEEc----CCCCcceEEEcC-CCCeEEEecCCceEEEEE
Confidence            47789999999999998    88999998886632    112222    235689999999 999999988888888888


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee-----------ccCccEEEEeec
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH-----------QIESKCMSVLPN  424 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----------~~~~~~~~~~~~  424 (540)
                      .......  ...+.........+.+++.++|+++++.+.++.+..+|...+......           ........+.++
T Consensus        96 ~~~~~~~--~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~  173 (302)
T d2p4oa1          96 LVKSDGT--VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF  173 (302)
T ss_dssp             EECTTSC--EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred             ecccccc--eeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc
Confidence            7654321  122222234566889999999999998888999999998876532211           112234455555


Q ss_pred             CCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccc
Q 009203          425 PCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPS  504 (540)
Q Consensus       425 ~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~  504 (540)
                      ..    .++++.+..+.|..++...........    . ......+..++|+++|+++++...++.|..|+.... ...+
T Consensus       174 ~~----~l~~~~~~~~~i~~~~~~~~~~~~~~~----~-~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~  243 (302)
T d2p4oa1         174 GN----FLYVSNTEKMLLLRIPVDSTDKPGEPE----I-FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTII  243 (302)
T ss_dssp             TT----EEEEEETTTTEEEEEEBCTTSCBCCCE----E-EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEE
T ss_pred             CC----ceeeecCCCCeEEeccccccccccccc----c-ccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEE
Confidence            43    477778888999999987654322110    0 012234567999999998888888999999987631 1123


Q ss_pred             ccccccccceeEEEE---cCCCCEEEEEEcC
Q 009203          505 QSIRAHQKRVFKAVW---HYSHPLLISISSD  532 (540)
Q Consensus       505 ~~~~~h~~~i~~l~~---s~~~~~l~s~~~d  532 (540)
                      ..........++++|   ++|++.|..++..
T Consensus       244 ~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         244 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             ECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            333334456899999   6788877665543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.34  E-value=5.9e-10  Score=105.11  Aligned_cols=287  Identities=10%  Similarity=-0.008  Sum_probs=159.0

Q ss_pred             EEEEEeC--CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          238 LFVTSAL--DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       238 ~l~tg~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      .|+.|++  .+.|.++.++.......+.....   ......+..|+|+++++.|+++    . .+.+..|.+........
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~---~~~~~~~s~la~s~d~~~ly~~----~-~~~~~~~~i~~~~~~~~   75 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTE---IPQDEPISWMTFDHERKNIYGA----A-MKKWSSFAVKSPTEIVH   75 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEE---CCTTCCCSEEEECTTSSEEEEE----E-BTEEEEEEEEETTEEEE
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeee---ccCCCCCCEEEEcCCCCEEEEE----e-CCcEEEEEEeCCCCeEE
Confidence            3555543  44565555544332222221111   1223446679999999999887    3 45688887764322111


Q ss_pred             EEeecCCCCcccceeEEEEeCCCCCEEEE--Ee-cCCcEEEEecCCCC------------CccccceeecccCCcceeEE
Q 009203          316 VTFLDDKPHVKGIINSIIFLPWENPCFAT--GG-SDHAVVLWSERDAE------------DSWKPKALHRNLHSSAVMGV  380 (540)
Q Consensus       316 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~s--~~-~dg~i~iwd~~~~~------------~~~~~~~~~~~~~~~~v~~l  380 (540)
                      ......    ......+.+++ +++.++.  +. ..+.|..+.+....            ................+.++
T Consensus        76 ~~~~~~----~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v  150 (365)
T d1jofa_          76 EASHPI----GGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGM  150 (365)
T ss_dssp             EEEEEC----CSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEE
T ss_pred             EeeecC----CCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEE
Confidence            111111    23355677787 6664322  21 23455544432211            00000000001123347899


Q ss_pred             EeccCCCEEEEEeC-CCeEEEEECCC-CCeee-----eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          381 AGMQQKQIVLSAGA-DKRIIGFDAGV-GRADF-----KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       381 ~~s~~~~~l~~~~~-dg~i~iwd~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                      .|+|+|+++++++. ...|.+|+... +....     ..........+.|+|++.  .+.++...+++|.+|++......
T Consensus       151 ~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~--~~yv~~e~~~~V~v~~~~~~~~~  228 (365)
T d1jofa_         151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN--YLYALMEAGNRICEYVIDPATHM  228 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTTCC
T ss_pred             EECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCc--eEEEeccCCCEEEEEEecCCCce
Confidence            99999998888765 45788887654 33221     123356788899999884  34566778899999999765422


Q ss_pred             eee-e---ccc--------cccCccccCeEEEEEcCCCCEEEEEeC------CCcEEEEeccCCCCccccc-----cccc
Q 009203          454 IHA-F---GWK--------QESSESQSALINQSWSPDGLYITSGSA------DPVIHLFDIRYSANKPSQS-----IRAH  510 (540)
Q Consensus       454 ~~~-~---~~~--------~~~~~~~~~v~~~~~sp~g~~l~sg~~------dg~i~iwd~~~~~~~~~~~-----~~~h  510 (540)
                      ... .   ...        .....+......+.++|||++|+++..      .+.|..|++... +.....     ....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~  307 (365)
T d1jofa_         229 PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLFLSPTPTS  307 (365)
T ss_dssp             EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEEEEECSSC
T ss_pred             EEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCC-CceeeEeEeeEEEcC
Confidence            111 0   000        011122334667899999999887642      233777777652 221111     1122


Q ss_pred             ccceeEEEEcC-CCCEEEEE-EcCCcEEEEeC
Q 009203          511 QKRVFKAVWHY-SHPLLISI-SSDLNIGLHKI  540 (540)
Q Consensus       511 ~~~i~~l~~s~-~~~~l~s~-~~dg~v~iw~l  540 (540)
                      .....+++++| +|++|+.+ ..++.|.+|++
T Consensus       308 G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         308 GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             CTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            34567899998 88977666 56799999974

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.34  E-value=9.3e-10  Score=101.21  Aligned_cols=252  Identities=11%  Similarity=0.053  Sum_probs=155.2

Q ss_pred             ceeEEEecCCCeEEEEeec---CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEE
Q 009203          277 PEDIAWHPQGNSLFSAHTA---DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVL  353 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~---~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i  353 (540)
                      ...++|.++|++.++....   +..++.|..||..++..  ............+....++|.+ +++.++++...+.|..
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~--~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLV   96 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcE--EEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEE
Confidence            5678999999977765100   01146788999887521  1111111001123467899999 8888888877777888


Q ss_pred             EecCCCCCccccceeec--ccC-CcceeEEEeccCCCEEEEEeC---------------CCeEEEEECCCCCeeeeeccC
Q 009203          354 WSERDAEDSWKPKALHR--NLH-SSAVMGVAGMQQKQIVLSAGA---------------DKRIIGFDAGVGRADFKHQIE  415 (540)
Q Consensus       354 wd~~~~~~~~~~~~~~~--~~~-~~~v~~l~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~  415 (540)
                      +|..+...    ..+..  .+. -...+.+++.++|++.++...               +|.|..++.. ++.......-
T Consensus        97 ~~~~g~~~----~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~  171 (314)
T d1pjxa_          97 VQTDGTFE----EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF  171 (314)
T ss_dssp             EETTSCEE----ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE
T ss_pred             EeCCCcEE----EEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCc
Confidence            88876542    11111  111 123678999999988876432               2355555554 3333222222


Q ss_pred             ccEEEEeecCCCC--CceEEEEEcCCCeEEEEECCCCcceeeeeccccccC-ccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 009203          416 SKCMSVLPNPCDF--NLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESS-ESQSALINQSWSPDGLYITSGSADPVIH  492 (540)
Q Consensus       416 ~~~~~~~~~~~~~--~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~sg~~dg~i~  492 (540)
                      .....++++|++.  ...++++.+..+.|..||+.......... ....+. ........++++.+|++.++....+.|.
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~-~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~  250 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK-VWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE  250 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE-EEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceee-EEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence            3345666666532  22355666788999999986543221110 000111 1233467899999999988887889999


Q ss_pred             EEeccCCCCcccccccccccceeEEEEcCCCC-EEEEEEcCCcEEEEe
Q 009203          493 LFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP-LLISISSDLNIGLHK  539 (540)
Q Consensus       493 iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~-~l~s~~~dg~v~iw~  539 (540)
                      +||.+.  +..+..+......+++++|.|+++ ++++.+.+|.|...+
T Consensus       251 ~~dp~~--g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         251 VFGPDG--GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             EECTTC--BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEeCCC--CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            999886  455555665556789999999997 557777778877665

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=1.3e-08  Score=91.83  Aligned_cols=240  Identities=10%  Similarity=0.118  Sum_probs=160.1

Q ss_pred             CCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCC---CcccceeEEEEeCCCCCEEEEE-ecCC
Q 009203          274 RRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKP---HVKGIINSIIFLPWENPCFATG-GSDH  349 (540)
Q Consensus       274 ~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~-~~dg  349 (540)
                      ......++++++|+++++-    ..++.|++||.+ +   ..+..+....   ........+++.+..+..+++. +.++
T Consensus        22 f~~P~gvavd~dg~i~VaD----~~n~rI~v~d~~-G---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~   93 (279)
T d1q7fa_          22 FTEPSGVAVNAQNDIIVAD----TNNHRIQIFDKE-G---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH   93 (279)
T ss_dssp             BSCEEEEEECTTCCEEEEE----GGGTEEEEECTT-S---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred             ECCccEEEEcCCCCEEEEE----CCCCEEEEEeCC-C---CEEEEecccCCCcccccccccccccccccccceeccCCcc
Confidence            3456789999999988876    788999999976 3   3343332211   1122355677776344455443 3445


Q ss_pred             cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeec---cCccEEEEeecCC
Q 009203          350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQ---IESKCMSVLPNPC  426 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~  426 (540)
                      .|..++.....     ..............+++.++|.++++....+.+.+++.. ++.+....   .......++++++
T Consensus        94 ~i~~~~~~g~~-----~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_          94 QIQIYNQYGQF-----VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             EEEEECTTSCE-----EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS
T ss_pred             ccccccccccc-----eeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeeccc
Confidence            77777765432     111112345567889999999998888888889998875 55444332   2345667777776


Q ss_pred             CCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCCCCcccc
Q 009203          427 DFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYSANKPSQ  505 (540)
Q Consensus       427 ~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~~~~~~  505 (540)
                      +   .++++....+.|++||....  ....++    ..+......+|+++++|+++++-.. ++.|.+|+.+   ++.+.
T Consensus       168 g---~i~v~d~~~~~V~~~d~~G~--~~~~~g----~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~---G~~~~  235 (279)
T d1q7fa_         168 Q---EIFISDNRAHCVKVFNYEGQ--YLRQIG----GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD---GQLIS  235 (279)
T ss_dssp             S---EEEEEEGGGTEEEEEETTCC--EEEEES----CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT---SCEEE
T ss_pred             e---eEEeeeccccceeeeecCCc--eeeeec----ccccccCCcccccccCCeEEEEECCCCcEEEEECCC---CCEEE
Confidence            6   67888888899999998643  222222    1234556889999999998877544 4579999865   66665


Q ss_pred             ccccc--ccceeEEEEcCCCCEEEEEEcCCcEEEEeC
Q 009203          506 SIRAH--QKRVFKAVWHYSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       506 ~~~~h--~~~i~~l~~s~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++...  ....+.|++.++|.+++ ++.+..|++|++
T Consensus       236 ~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~  271 (279)
T d1q7fa_         236 ALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRY  271 (279)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEEC
T ss_pred             EEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEe
Confidence            55422  23578999999997555 567999999985

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.22  E-value=6.9e-09  Score=92.62  Aligned_cols=236  Identities=10%  Similarity=0.015  Sum_probs=155.2

Q ss_pred             CCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEE
Q 009203          275 RWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLW  354 (540)
Q Consensus       275 ~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  354 (540)
                      ....++++.++|+..++.   .+..+.+..++....  .  ...+...  .......+++++ ++.++++....+.++++
T Consensus        14 ~~P~~vavd~dG~i~v~~---~~~~~~i~~~~~~~~--~--~~~~~~~--~~~~p~gvav~~-~g~i~v~d~~~~~i~~~   83 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTS---EGMYGRVVKLATGST--G--TTVLPFN--GLYQPQGLAVDG-AGTVYVTDFNNRVVTLA   83 (260)
T ss_dssp             CCEEEEEECTTCCEEEEE---CSSSCEEEEEC------C--EEECCCC--SCCSCCCEEECT-TCCEEEEETTTEEEEEC
T ss_pred             CCCCEEEEcCCCCEEEEE---cCCCCEEEEEcCCCc--e--EEEeccC--CccCceEEEEcC-CCCEEEeeeeeceeeee
Confidence            445799999999976664   145677887776643  1  2222211  123467899999 88888887777777776


Q ss_pred             ecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEE
Q 009203          355 SERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMV  433 (540)
Q Consensus       355 d~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l  433 (540)
                      +-.+...      ...........++++.++|+++++-..+..+..++......... .........+++++++   .++
T Consensus        84 ~~~~~~~------~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g---~~~  154 (260)
T d1rwia_          84 AGSNNQT------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG---NVY  154 (260)
T ss_dssp             TTCSCCE------ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTC---CEE
T ss_pred             eecccee------eeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCC---CEe
Confidence            6554432      11122335678999999999888877777888888765443222 2222344567778766   577


Q ss_pred             EEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-cccc
Q 009203          434 QTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-AHQK  512 (540)
Q Consensus       434 ~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~h~~  512 (540)
                      ++...++.|..+|..........       .........++++++|+++++....+.|..++....   ....+. ..-.
T Consensus       155 v~~~~~~~i~~~d~~~~~~~~~~-------~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~---~~~~~~~~~~~  224 (260)
T d1rwia_         155 VTDTDNNRVVKLEAESNNQVVLP-------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST---TSTVLPFTGLN  224 (260)
T ss_dssp             EEEGGGTEEEEECTTTCCEEECC-------CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS---CCEECCCCSCC
T ss_pred             eeccccccccccccccceeeeee-------ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC---eEEEEccCCCC
Confidence            77788889999998765432211       123346789999999999888888888988887642   222221 2234


Q ss_pred             ceeEEEEcCCCCEEEEEEcCCcEEEEe
Q 009203          513 RVFKAVWHYSHPLLISISSDLNIGLHK  539 (540)
Q Consensus       513 ~i~~l~~s~~~~~l~s~~~dg~v~iw~  539 (540)
                      ....|+++++|.++++-..++.|+..+
T Consensus       225 ~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         225 TPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             CeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            578999999999888877777776543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.21  E-value=5.9e-09  Score=98.06  Aligned_cols=285  Identities=9%  Similarity=-0.013  Sum_probs=159.6

Q ss_pred             cceEEecCCCCeEEEeccchhcccccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc
Q 009203          198 IPLVRTSASPATIHCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP  277 (540)
Q Consensus       198 v~~~~~~~~d~~i~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V  277 (540)
                      |+.+.+....+++.+-..  +.......+.-|+|+|| +++|.+... +.+..|.+.............      .....
T Consensus        16 i~~~~fd~~~~~l~~~~~--~~~~~~~~~s~la~s~d-~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~------~~~~p   85 (365)
T d1jofa_          16 IFTVQFDDEKLTCKLIKR--TEIPQDEPISWMTFDHE-RKNIYGAAM-KKWSSFAVKSPTEIVHEASHP------IGGHP   85 (365)
T ss_dssp             EEEEEEETTTTEEEEEEE--EECCTTCCCSEEEECTT-SSEEEEEEB-TEEEEEEEEETTEEEEEEEEE------CCSSG
T ss_pred             EEEEEEcCCCCeEEEeee--eeccCCCCCCEEEEcCC-CCEEEEEeC-CcEEEEEEeCCCCeEEEeeec------CCCCc
Confidence            445555555554433211  11233455677999996 777776654 568888776543222221111      11335


Q ss_pred             eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCC-----------CCcccceeEEEEeCCCCCEEEEEe
Q 009203          278 EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDK-----------PHVKGIINSIIFLPWENPCFATGG  346 (540)
Q Consensus       278 ~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~p~~~~~l~s~~  346 (540)
                      ..++++++++.++... .....+.|..+.+........+..+...           ......+.++.|+| ++++++++.
T Consensus        86 ~~v~~~~~~~~~~v~~-a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d  163 (365)
T d1jofa_          86 RANDADTNTRAIFLLA-AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSAD  163 (365)
T ss_dssp             GGGCTTSCCEEEEEEE-CSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEE-ecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCCEEEEee
Confidence            6788899988543321 1134556665544321110101100000           00123478999999 999887775


Q ss_pred             c-CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCCeEEEEECCCCCeeee--e----------
Q 009203          347 S-DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADKRIIGFDAGVGRADFK--H----------  412 (540)
Q Consensus       347 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~----------  412 (540)
                      . ...|.+|+........................++|+|+++++++.. .++.|.+|++..+.....  .          
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~  243 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence            4 3578888776443211111222223456789999999999886655 478999999876543211  0          


Q ss_pred             --------ccCccEEEEeecCCCCCceEEEEEcC------CCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcC-
Q 009203          413 --------QIESKCMSVLPNPCDFNLFMVQTGTP------GRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSP-  477 (540)
Q Consensus       413 --------~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-  477 (540)
                              ........+.++|++   .+|+++..      .+.|..|++............. ..........+++++| 
T Consensus       244 ~~~~~~~~~~~~~~~~i~~spdG---~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~G~~p~~i~~~p~  319 (365)
T d1jofa_         244 PDRDPETGKGLYRADVCALTFSG---KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS-PTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTS---SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE-ECSSCCTTCCCEEECTT
T ss_pred             cccccccccccCCccceEECCCC---CEEEEEcccCCCccceEEEEEEecCCCceeeEeEee-EEEcCCCCccEEEecCC
Confidence                    011235567889988   55555421      2347778876544322211111 1122234567799998 


Q ss_pred             CCCEEEEE-eCCCcEEEEeccC
Q 009203          478 DGLYITSG-SADPVIHLFDIRY  498 (540)
Q Consensus       478 ~g~~l~sg-~~dg~i~iwd~~~  498 (540)
                      +|++|+++ ..++.|.+|+++.
T Consensus       320 ~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         320 SDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCEEEEEeCCCCeEEEEEEeC
Confidence            89987766 5679999999875

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.20  E-value=3.3e-10  Score=107.09  Aligned_cols=227  Identities=10%  Similarity=0.035  Sum_probs=141.3

Q ss_pred             CCCCeEEEEecCCCCCceeEEeecC-------------------------CCCcccceeEEEEeCCCCCEEEEE-ecCCc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDD-------------------------KPHVKGIINSIIFLPWENPCFATG-GSDHA  350 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~p~~~~~l~s~-~~dg~  350 (540)
                      +.+|.|.+|++.+++....+..+..                         ..|| .......+.| ||++|++. ..+..
T Consensus        18 g~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hh-P~~s~t~gtp-DGr~lfV~d~~~~r   95 (441)
T d1qnia2          18 GHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHH-PHISMTDGRY-DGKYLFINDKANTR   95 (441)
T ss_dssp             BTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCC-CEEEEETTEE-EEEEEEEEETTTTE
T ss_pred             CCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccC-CCcceecccC-CCCEEEEEcCCCCE
Confidence            8899999999987732222222210                         0012 2244455578 88888555 56789


Q ss_pred             EEEEecCCCCCccccceeecccCCcceeEEEeccCCCE--EEEEeCCC-----------------eEEEEECCCCCeeee
Q 009203          351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQI--VLSAGADK-----------------RIIGFDAGVGRADFK  411 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~--l~~~~~dg-----------------~i~iwd~~~~~~~~~  411 (540)
                      |.++|+.+.+.   ...+ ...+...+..++|+|+|+.  ++..+.+.                 .+..+|..+.+....
T Consensus        96 VavIDl~t~k~---~~ii-~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q  171 (441)
T d1qnia2          96 VARIRLDIMKT---DKIT-HIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ  171 (441)
T ss_dssp             EEEEETTTTEE---EEEE-ECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred             EEEEECCCCcE---eeEE-ecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence            99999999874   2222 2235677999999999984  44444332                 245688888877776


Q ss_pred             eccCccEEEEeecCCCCCceEEEEEcCC-----------------------------------------CeEEEEECCCC
Q 009203          412 HQIESKCMSVLPNPCDFNLFMVQTGTPG-----------------------------------------RQLRLYDIRLR  450 (540)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----------------------------------------g~v~i~d~~~~  450 (540)
                      .........+.++|++   .++++.+.+                                         +.+.+++....
T Consensus       172 I~v~~~p~~v~~spdG---k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~  248 (441)
T d1qnia2         172 VIVDGNLDNTDADYTG---KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES  248 (441)
T ss_dssp             EEESSCCCCEEECSSS---SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC
T ss_pred             EecCCCccceEECCCC---CEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC
Confidence            6666777788888887   455544332                                         22222222221


Q ss_pred             cceeeeeccccccCccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeccCCC------Cccccccccccc---ceeEEEEc
Q 009203          451 QTEIHAFGWKQESSESQSALINQSWSPDGLYIT-SGSADPVIHLFDIRYSA------NKPSQSIRAHQK---RVFKAVWH  520 (540)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-sg~~dg~i~iwd~~~~~------~~~~~~~~~h~~---~i~~l~~s  520 (540)
                      .. ..      .+... .....+.++|||++++ ++..+++|.|||+..-.      ......+.++..   .....+|+
T Consensus       249 ~v-~~------~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd  320 (441)
T d1qnia2         249 EF-TR------YIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFD  320 (441)
T ss_dssp             SS-EE------EECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEEC
T ss_pred             ce-EE------EEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceec
Confidence            11 11      11222 2457799999999875 56789999999987510      011111212111   23456899


Q ss_pred             CCCCEEEEEEcCCcEEEEeC
Q 009203          521 YSHPLLISISSDLNIGLHKI  540 (540)
Q Consensus       521 ~~~~~l~s~~~dg~v~iw~l  540 (540)
                      ++|..+.+...|..|..|++
T Consensus       321 ~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         321 GRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             SSSEEEEEETTTTEEEEEEH
T ss_pred             CCceEEEcccccceEEEecc
Confidence            99999999999999999984

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=1.3e-08  Score=90.69  Aligned_cols=237  Identities=9%  Similarity=0.077  Sum_probs=153.2

Q ss_pred             ceEEEEEecCCCcEEEEE-eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          225 KLRSLSLNPVNEQLFVTS-ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      .-.+|+++++ |.++++. +..+.+..++......  .... .     +-......++++++|.++++.    ..++.++
T Consensus        15 ~P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~--~~~~-~-----~~~~~p~gvav~~~g~i~v~d----~~~~~i~   81 (260)
T d1rwia_          15 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGT--TVLP-F-----NGLYQPQGLAVDGAGTVYVTD----FNNRVVT   81 (260)
T ss_dssp             CEEEEEECTT-CCEEEEECSSSCEEEEEC----CE--EECC-C-----CSCCSCCCEEECTTCCEEEEE----TTTEEEE
T ss_pred             CCCEEEEcCC-CCEEEEEcCCCCEEEEEcCCCceE--EEec-c-----CCccCceEEEEcCCCCEEEee----eeeceee
Confidence            4589999996 7765554 4556777776654331  1111 1     112335689999999887776    6777777


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEec
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGM  383 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  383 (540)
                      +++-.+.   ..+.....    ...+.++++.+ +++++++-..+..+..++......     ............+++++
T Consensus        82 ~~~~~~~---~~~~~~~~----~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~i~~~  148 (260)
T d1rwia_          82 LAAGSNN---QTVLPFDG----LNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-----TVLPFTGLNDPDGVAVD  148 (260)
T ss_dssp             ECTTCSC---CEECCCCS----CCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSC-----EECCCCSCCSCCEEEEC
T ss_pred             eeeeccc---eeeeeeee----eeecccccccc-cceeEeecccccccccccccccee-----eeeeecccCCcceeeec
Confidence            6655443   22221211    24578999999 888888777777788887766542     11111223456789999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccc
Q 009203          384 QQKQIVLSAGADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQE  462 (540)
Q Consensus       384 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~  462 (540)
                      ++|+++++...++.|..+|......... ...-.....+++++++   .++++....+.|..++..........      
T Consensus       149 ~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g---~l~vsd~~~~~i~~~~~~~~~~~~~~------  219 (260)
T d1rwia_         149 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG---TVYVTEHNTNQVVKLLAGSTTSTVLP------  219 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC---CEEEEETTTTEEEEECTTCSCCEECC------
T ss_pred             CCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeee---eeeeeecCCCEEEEEeCCCCeEEEEc------
Confidence            9999888888889999999886544332 2333556788888876   57788888888998887654322211      


Q ss_pred             cCccccCeEEEEEcCCCCEEEEEeCCCcEEEEecc
Q 009203          463 SSESQSALINQSWSPDGLYITSGSADPVIHLFDIR  497 (540)
Q Consensus       463 ~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~  497 (540)
                       ...-.....|+++++|+++++-..+++|+.++..
T Consensus       220 -~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         220 -FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             -CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             -cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence             1122467899999999988887777777655543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=6.3e-08  Score=86.61  Aligned_cols=239  Identities=15%  Similarity=0.113  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcc
Q 009203          247 VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVK  326 (540)
Q Consensus       247 ~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  326 (540)
                      .|.|-|... .....+.        .+...+...+|||||+.||.... ......+.+.+...+.   ......    +.
T Consensus        20 ~l~i~d~dG-~~~~~l~--------~~~~~~~sP~wSPDGk~IAf~~~-~~~~~~~~~~~~~~~~---~~~~~~----~~   82 (269)
T d2hqsa1          20 ELRVSDYDG-YNQFVVH--------RSPQPLMSPAWSPDGSKLAYVTF-ESGRSALVIQTLANGA---VRQVAS----FP   82 (269)
T ss_dssp             EEEEEETTS-CSCEEEE--------EESSCEEEEEECTTSSEEEEEEC-TTSSCEEEEEETTTCC---EEEEEC----CS
T ss_pred             EEEEEcCCC-CCcEEEe--------cCCCceeeeEECCCCCEEEEEEe-eccCcceeeeecccCc---eeEEee----ee
Confidence            466666653 3333332        22345778999999999987622 1233356666666542   122222    34


Q ss_pred             cceeEEEEeCCCCCEEEEEec-CCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe-CCC--eEEEEE
Q 009203          327 GIINSIIFLPWENPCFATGGS-DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG-ADK--RIIGFD  402 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg--~i~iwd  402 (540)
                      +......|+| ++..++.... ++...++.......    ................+++++..++..+ .+|  .|.+.+
T Consensus        83 ~~~~~~~~sp-dg~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~  157 (269)
T d2hqsa1          83 RHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASG----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  157 (269)
T ss_dssp             SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC----CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cccccceecC-CCCeeeEeeecCCccceeecccccc----cceeeeeccccccccccccccccceecccccCCceEeeee
Confidence            5688899999 8888876553 33333333222221    1111122334445556777776655544 344  567777


Q ss_pred             CCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCe--EEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCC
Q 009203          403 AGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQ--LRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGL  480 (540)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~  480 (540)
                      +..+................++|++.  .++......+.  +.++|........         ..+........|||||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~~~p~~SPDG~  226 (269)
T d2hqsa1         158 INGGAPQRITWEGSQNQDADVSSDGK--FMVMVSSNGGQQHIAKQDLATGGVQV---------LSSTFLDETPSLAPNGT  226 (269)
T ss_dssp             TTSSCCEECCCSSSEEEEEEECTTSS--EEEEEEECSSCEEEEEEETTTCCEEE---------CCCSSSCEEEEECTTSS
T ss_pred             cccccceeeecccccccccccccccc--eeEEEeecCCceeeeEeecccccceE---------eecCccccceEECCCCC
Confidence            77766555555566677788999884  23333444444  4444544433211         12344567789999999


Q ss_pred             EEEEEeC---CCcEEEEeccCCCCcccccccccccceeEEEEcC
Q 009203          481 YITSGSA---DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHY  521 (540)
Q Consensus       481 ~l~sg~~---dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~  521 (540)
                      +|+..+.   ...|++++++.   .....+....+.+...+|+|
T Consensus       227 ~i~f~s~~~~~~~l~~~~~dg---~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         227 MVIYSSSQGMGSVLNLVSTDG---RFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEEEEEETTEEEEEEEETTS---CCEEECCCSSSEEEEEEECC
T ss_pred             EEEEEEcCCCCcEEEEEECCC---CCEEEEeCCCCcEEeEEeCC
Confidence            9875543   34688899885   33455555667788999998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.14  E-value=9.2e-09  Score=94.06  Aligned_cols=235  Identities=13%  Similarity=0.047  Sum_probs=151.1

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      .+..++++|| |+++++...+++|..|+....  ...+.        .....+.+++|.++|+++++.    ..++.+..
T Consensus        29 ~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~g~--~~~~~--------~~~~~~~gla~~~dG~l~v~~----~~~~~~~~   93 (302)
T d2p4oa1          29 FLENLASAPD-GTIFVTNHEVGEIVSITPDGN--QQIHA--------TVEGKVSGLAFTSNGDLVATG----WNADSIPV   93 (302)
T ss_dssp             CEEEEEECTT-SCEEEEETTTTEEEEECTTCC--EEEEE--------ECSSEEEEEEECTTSCEEEEE----ECTTSCEE
T ss_pred             CcCCEEECCC-CCEEEEeCCCCEEEEEeCCCC--EEEEE--------cCCCCcceEEEcCCCCeEEEe----cCCceEEE
Confidence            4788999996 899999999998888885532  12221        233568899999999988887    67788888


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccc-----cceeecccCCcceeE
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWK-----PKALHRNLHSSAVMG  379 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~v~~  379 (540)
                      |+........ ...... . .......+++.+ ++.++++.+.++.+..+|..++.....     ...............
T Consensus        94 ~~~~~~~~~~-~~~~~~-~-~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng  169 (302)
T d2p4oa1          94 VSLVKSDGTV-ETLLTL-P-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG  169 (302)
T ss_dssp             EEEECTTSCE-EEEEEC-T-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred             EEecccccce-eecccc-C-CccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence            8776543211 111111 1 235588999999 898888888888898888877642100     000000112234566


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCCCeeee---eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeee
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFK---HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHA  456 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~  456 (540)
                      +.+.. +.++++.+..+.|..++.........   .........+++++++   .++++...++.|..|+......... 
T Consensus       170 i~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG---~l~va~~~~~~V~~i~p~G~~~~~~-  244 (302)
T d2p4oa1         170 LKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG---NLYGATHIYNSVVRIAPDRSTTIIA-  244 (302)
T ss_dssp             EEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC---CEEEECBTTCCEEEECTTCCEEEEE-
T ss_pred             ccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCC---CEEEEEcCCCcEEEECCCCCEEEEE-
Confidence            66653 45566677788999998876443221   1223334567888877   5777777788999998764332222 


Q ss_pred             eccccccCccccCeEEEEE---cCCCCEEEEEeCC
Q 009203          457 FGWKQESSESQSALINQSW---SPDGLYITSGSAD  488 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~---sp~g~~l~sg~~d  488 (540)
                           .....-..+++++|   ++|++.|+.++..
T Consensus       245 -----~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         245 -----QAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             -----CGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -----ecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence                 11223346899999   6788887766544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=1.6e-07  Score=84.51  Aligned_cols=246  Identities=11%  Similarity=0.088  Sum_probs=160.4

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCCCeE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGDSQI  302 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d~~i  302 (540)
                      ..-..|+++|+ ++++++-..+..|++||.+ ++.+..+......  .+.......+++..+.. .+++.   .+.++.|
T Consensus        23 ~~P~gvavd~d-g~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~---~~~~~~i   95 (279)
T d1q7fa_          23 TEPSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR--DSQLLYPNRVAVVRNSGDIIVTE---RSPTHQI   95 (279)
T ss_dssp             SCEEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS--TTCBSSEEEEEEETTTTEEEEEE---CGGGCEE
T ss_pred             CCccEEEEcCC-CCEEEEECCCCEEEEEeCC-CCEEEEecccCCC--cccccccccccccccccccceec---cCCcccc
Confidence            35689999996 8888887778899999965 4443333211110  12223345667666544 44443   1456678


Q ss_pred             EEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEe
Q 009203          303 SVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAG  382 (540)
Q Consensus       303 ~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~  382 (540)
                      ..++...    .....+..  ........+++.+ ++.++++....+.+.+++.....    ...+....+......+++
T Consensus        96 ~~~~~~g----~~~~~~~~--~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~~----~~~~g~~~~~~~~~~i~~  164 (279)
T d1q7fa_          96 QIYNQYG----QFVRKFGA--TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNV----LHKFGCSKHLEFPNGVVV  164 (279)
T ss_dssp             EEECTTS----CEEEEECT--TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE----EEEEECTTTCSSEEEEEE
T ss_pred             ccccccc----cceeecCC--Ccccccceecccc-CCcEEEEeeccceeeEeccCCce----eecccccccccccceeee
Confidence            8887653    23333332  1234578899998 88888887777888888876432    222223446677889999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeeecc---CccEEEEeecCCCCCceEEEEEc-CCCeEEEEECCCCcceeeeec
Q 009203          383 MQQKQIVLSAGADKRIIGFDAGVGRADFKHQI---ESKCMSVLPNPCDFNLFMVQTGT-PGRQLRLYDIRLRQTEIHAFG  458 (540)
Q Consensus       383 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~i~d~~~~~~~~~~~~  458 (540)
                      .++++.+++....+.|++||.. ++.+.....   ......+++++++   .++++-. .++.|.+|+.. ++. ...+.
T Consensus       165 d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G---~i~Vad~~~~~~v~~f~~~-G~~-~~~~~  238 (279)
T d1q7fa_         165 NDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG---EILIADNHNNFNLTIFTQD-GQL-ISALE  238 (279)
T ss_dssp             CSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTC---CEEEEECSSSCEEEEECTT-SCE-EEEEE
T ss_pred             ccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCC---eEEEEECCCCcEEEEECCC-CCE-EEEEe
Confidence            9999999988889999999986 555544432   2356788898887   4555543 45579999854 332 22221


Q ss_pred             cccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccC
Q 009203          459 WKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRY  498 (540)
Q Consensus       459 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~  498 (540)
                      .    .........|++.|+|.+++ ++.++.|++|....
T Consensus       239 ~----~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         239 S----KVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             E----SSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred             C----CCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence            1    12223578999999997655 45789999999886

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.11  E-value=8.8e-08  Score=87.97  Aligned_cols=235  Identities=12%  Similarity=0.011  Sum_probs=149.4

Q ss_pred             ceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC----CcEE
Q 009203          277 PEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD----HAVV  352 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----g~i~  352 (540)
                      +..++|.++|++.++-    ..++.|..|+..+.   .....+..   .......++|++ ++.++++...+    +.+.
T Consensus        42 lEG~~~D~~G~Ly~~D----~~~g~I~ri~p~g~---~~~~~~~~---~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~  110 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLD----VFEGNIFKINPETK---EIKRPFVS---HKANPAAIKIHK-DGRLFVCYLGDFKSTGGIF  110 (319)
T ss_dssp             EEEEEECTTSCEEEEE----TTTCEEEEECTTTC---CEEEEEEC---SSSSEEEEEECT-TSCEEEEECTTSSSCCEEE
T ss_pred             cEeCEECCCCCEEEEE----CCCCEEEEEECCCC---eEEEEEeC---CCCCeeEEEECC-CCCEEEEecCCCccceeEE
Confidence            3478999999977776    78999999998764   22222221   234578999999 89888775432    3355


Q ss_pred             EEecCCCCCccccceee-cccCCcceeEEEeccCCCEEEEEeC------CCeEEEEECCCCCeeeeeccCccEEEEeecC
Q 009203          353 LWSERDAEDSWKPKALH-RNLHSSAVMGVAGMQQKQIVLSAGA------DKRIIGFDAGVGRADFKHQIESKCMSVLPNP  425 (540)
Q Consensus       353 iwd~~~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  425 (540)
                      ..+..+...    .... ...-...++.+++.++|++.++...      .+.+..++...+........-.....++|+|
T Consensus       111 ~~~~~~~~~----~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~  186 (319)
T d2dg1a1         111 AATENGDNL----QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALST  186 (319)
T ss_dssp             EECTTSCSC----EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT
T ss_pred             EEcCCCcee----eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeecc
Confidence            555555442    2211 1122345788999999987766432      2346666665443322223334456789999


Q ss_pred             CCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc-cccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccc
Q 009203          426 CDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK-QESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPS  504 (540)
Q Consensus       426 ~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~  504 (540)
                      ++.  .++++-+..+.|..||+............. ............++++++|++.++....+.|.+||..   ++.+
T Consensus       187 dg~--~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~---G~~l  261 (319)
T d2dg1a1         187 DEK--VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR---GYPI  261 (319)
T ss_dssp             TSS--EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT---SCEE
T ss_pred             ccc--eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC---CcEE
Confidence            873  355667778999999987543222111100 0011112236789999999988888889999999975   6666


Q ss_pred             cccc------ccccceeEEEEcCCCCEEEEEEc
Q 009203          505 QSIR------AHQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       505 ~~~~------~h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      ..+.      ++...+++++|.+++..+++...
T Consensus       262 ~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         262 GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            5553      34446889999998876666543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.08  E-value=5.4e-08  Score=89.10  Aligned_cols=244  Identities=9%  Similarity=0.053  Sum_probs=147.6

Q ss_pred             ceEEEEEecCCCcEEEEEeC-------CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCC
Q 009203          225 KLRSLSLNPVNEQLFVTSAL-------DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADS  297 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~  297 (540)
                      ...+++|.|+ |+++++...       +|+|..||..++..........    .........++|.++++.|+++    .
T Consensus        19 g~EGpa~d~d-G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~----~~~~g~P~Gl~~~~dg~~l~va----d   89 (314)
T d1pjxa_          19 GAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV----NGYGGIPAGCQCDRDANQLFVA----D   89 (314)
T ss_dssp             TCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE----TTEECCEEEEEECSSSSEEEEE----E
T ss_pred             CCeEeEEeCC-CCEEEEECccccccccCCEEEEEECCCCcEEEEECCcc----ccCCCcceeEEEeCCCCEEEEE----E
Confidence            4567889996 777766432       4568888887765322211111    0111235689999999988887    6


Q ss_pred             CCCeEEEEecCCCCCceeEEeecC--CCCcccceeEEEEeCCCCCEEEEEec---------------CCcEEEEecCCCC
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDD--KPHVKGIINSIIFLPWENPCFATGGS---------------DHAVVLWSERDAE  360 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~s~~~---------------dg~i~iwd~~~~~  360 (540)
                      ..+.|..++.+..    ....+..  ....-...+.+++.+ +|.+.++...               +|.|..++... +
T Consensus        90 ~~~~i~~~~~~g~----~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~  163 (314)
T d1pjxa_          90 MRLGLLVVQTDGT----FEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q  163 (314)
T ss_dssp             TTTEEEEEETTSC----EEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C
T ss_pred             CCCeEEEEeCCCc----EEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeecC-c
Confidence            6677888888754    1111111  001112367899999 8888877432               23444444432 2


Q ss_pred             CccccceeecccCCcceeEEEeccCCC-----EEEEEeCCCeEEEEECCCCCeeee------ec--cCccEEEEeecCCC
Q 009203          361 DSWKPKALHRNLHSSAVMGVAGMQQKQ-----IVLSAGADKRIIGFDAGVGRADFK------HQ--IESKCMSVLPNPCD  427 (540)
Q Consensus       361 ~~~~~~~~~~~~~~~~v~~l~~s~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~------~~--~~~~~~~~~~~~~~  427 (540)
                          ...+.  ......+.++|+|++.     ++++-+..+.|..||+.....+..      ..  .......++++.++
T Consensus       164 ----~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G  237 (314)
T d1pjxa_         164 ----MIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             ----EEEEE--EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred             ----eeEee--CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC
Confidence                11111  1223457899998764     445556788899998764332211      11  11234567787776


Q ss_pred             CCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCE-EEEEeCCCcEEEEeccCC
Q 009203          428 FNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLY-ITSGSADPVIHLFDIRYS  499 (540)
Q Consensus       428 ~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~sg~~dg~i~iwd~~~~  499 (540)
                         .++++....+.|.+||...+......       ......+++++|.|+++. +++.+.+|.|..+++...
T Consensus       238 ---nlyVa~~~~g~I~~~dp~~g~~~~~i-------~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         238 ---NLLVANWGSSHIEVFGPDGGQPKMRI-------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             ---CEEEEEETTTEEEEECTTCBSCSEEE-------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             ---cEEEEEcCCCEEEEEeCCCCEEEEEE-------ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence               56677777899999998766532211       122346889999999974 566667888888887753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.01  E-value=4e-07  Score=83.45  Aligned_cols=237  Identities=13%  Similarity=0.077  Sum_probs=144.0

Q ss_pred             ceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEE
Q 009203          225 KLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISV  304 (540)
Q Consensus       225 ~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~v  304 (540)
                      .+..++|.++ |+++++-...+.|..|+.........+.        ........++|+++|+++++........+.+..
T Consensus        41 ~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~~~~--------~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~  111 (319)
T d2dg1a1          41 QLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFV--------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  111 (319)
T ss_dssp             CEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEE--------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             CcEeCEECCC-CCEEEEECCCCEEEEEECCCCeEEEEEe--------CCCCCeeEEEECCCCCEEEEecCCCccceeEEE
Confidence            4568999996 8888888888999989887654333221        222346789999999887775100011334555


Q ss_pred             EecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec------CCcEEEEecCCCCCccccceeecccCCccee
Q 009203          305 LNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS------DHAVVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       305 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      .+....   ......... .....+..+++.+ +|++.++...      .+.+..++...+.    ...+..  .....+
T Consensus       112 ~~~~~~---~~~~~~~~~-~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~----~~~~~~--~~~~pn  180 (319)
T d2dg1a1         112 ATENGD---NLQDIIEDL-STAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRT----VTPIIQ--NISVAN  180 (319)
T ss_dssp             ECTTSC---SCEEEECSS-SSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCC----EEEEEE--EESSEE
T ss_pred             EcCCCc---eeeeeccCC-CcccCCcceeEEe-ccceeecccccccccCcceeEEEecccce----eEEEee--ccceee
Confidence            555543   222222211 1134578899999 8887766432      1335555554433    122211  223467


Q ss_pred             EEEeccCCCEEE-EEeCCCeEEEEECCCCC-eeee--------eccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECC
Q 009203          379 GVAGMQQKQIVL-SAGADKRIIGFDAGVGR-ADFK--------HQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIR  448 (540)
Q Consensus       379 ~l~~s~~~~~l~-~~~~dg~i~iwd~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~  448 (540)
                      .++|+|+++.|+ +-+..+.|..||+.... ....        .........++++.++   .+.++....+.|.+||..
T Consensus       181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G---~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD---NLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC---CEEEEEETTTEEEEECTT
T ss_pred             eeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC---CEEEEEcCCCEEEEECCC
Confidence            899999998664 44567899999986432 1111        1112235567888777   577777888999999964


Q ss_pred             CCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEe
Q 009203          449 LRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                       ++ .+..+.......++...+++++|.+++..+++..
T Consensus       258 -G~-~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         258 -GY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             -SC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             -Cc-EEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence             44 2333333333335566788999999887766554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=1.1e-06  Score=78.10  Aligned_cols=214  Identities=12%  Similarity=-0.003  Sum_probs=127.8

Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC---cEEEEecCCCCCccccceeecccCCcce
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH---AVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      .|.|.|.+.. ....+  ...    ...+...+|+| ||+.||......   .+.+.+..++..    ..+.  .+....
T Consensus        20 ~l~i~d~dG~-~~~~l--~~~----~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~   85 (269)
T d2hqsa1          20 ELRVSDYDGY-NQFVV--HRS----PQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV----RQVA--SFPRHN   85 (269)
T ss_dssp             EEEEEETTSC-SCEEE--EEE----SSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE----EEEE--CCSSCE
T ss_pred             EEEEEcCCCC-CcEEE--ecC----CCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCce----eEEe--eeeccc
Confidence            5777787743 22333  222    34588999999 999998765443   467777776652    2332  366778


Q ss_pred             eEEEeccCCCEEEEEeCC-C--eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCC--eEEEEECCCCcc
Q 009203          378 MGVAGMQQKQIVLSAGAD-K--RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGR--QLRLYDIRLRQT  452 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~  452 (540)
                      ....|+|+|..++..... +  .+..+.....................+++.+.  ..+++...++  .|.++++.....
T Consensus        86 ~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~i~~~~~~~~~~  163 (269)
T d2hqsa1          86 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ--NLAFTSDQAGRPQVYKVNINGGAP  163 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTSSCC
T ss_pred             ccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccc--cceecccccCCceEeeeecccccc
Confidence            899999999998876642 2  23444444444444344444444445555442  3455555555  455566655442


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSA-DPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      ..        ............|+|+|+.++..+. .+...+|..... .... .+..+........|+|||+.|+..+.
T Consensus       164 ~~--------~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         164 QR--------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-TGGV-QVLSSTFLDETPSLAPNGTMVIYSSS  233 (269)
T ss_dssp             EE--------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT-TCCE-EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred             ee--------eecccccccccccccccceeEEEeecCCceeeeEeecc-cccc-eEeecCccccceEECCCCCEEEEEEc
Confidence            22        2234456777899999999887654 445555555542 2222 23334556778899999998865543


Q ss_pred             C---CcEEEEeC
Q 009203          532 D---LNIGLHKI  540 (540)
Q Consensus       532 d---g~v~iw~l  540 (540)
                      .   ..|++|++
T Consensus       234 ~~~~~~l~~~~~  245 (269)
T d2hqsa1         234 QGMGSVLNLVST  245 (269)
T ss_dssp             ETTEEEEEEEET
T ss_pred             CCCCcEEEEEEC
Confidence            3   34666653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.1e-06  Score=84.90  Aligned_cols=290  Identities=11%  Similarity=0.075  Sum_probs=156.0

Q ss_pred             CceEEEEEecCCCcEEEEEe---------CCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEee
Q 009203          224 RKLRSLSLNPVNEQLFVTSA---------LDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHT  294 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~  294 (540)
                      -.+....|||| +++++...         ..+.+.++|+.++... .+...     ......+....|||||+.||..  
T Consensus        61 ~~~~~~~~SpD-~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-~l~~~-----~~~~~~l~~~~wSPDG~~iafv--  131 (465)
T d1xfda1          61 LRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPP-----EVSNAKLQYAGWGPKGQQLIFI--  131 (465)
T ss_dssp             TTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCT-----TCCSCCCSBCCBCSSTTCEEEE--
T ss_pred             cccceeEECCC-CCeEEEEEcccceeEeeccccEEEEEccCCcee-eccCc-----cCCccccceeeeccCCceEEEE--
Confidence            36778899997 77766653         3577889999887632 22111     1233456678999999999886  


Q ss_pred             cCCCCCeEEEEecCCCCCceeEEeec-CCCC--------------cccceeEEEEeCCCCCEEEEEecC-C---------
Q 009203          295 ADSGDSQISVLNLNKTKGRACVTFLD-DKPH--------------VKGIINSIIFLPWENPCFATGGSD-H---------  349 (540)
Q Consensus       295 ~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~--------------~~~~v~~~~~~p~~~~~l~s~~~d-g---------  349 (540)
                         .++.|.+.+..++..   .+... +...              ..+.-.++-|+| ||+.||....| .         
T Consensus       132 ---~~~nl~~~~~~~~~~---~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~  204 (465)
T d1xfda1         132 ---FENNIYYCAHVGKQA---IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPT  204 (465)
T ss_dssp             ---ETTEEEEESSSSSCC---EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECC
T ss_pred             ---ecceEEEEecCCCce---EEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeeccc
Confidence               577898888876533   22221 1100              001124778999 99999876432 2         


Q ss_pred             ------------------------cEEEEecCCCCCccccceee-cccCCcceeEEEeccCCCEEEEEeC-C---CeEEE
Q 009203          350 ------------------------AVVLWSERDAEDSWKPKALH-RNLHSSAVMGVAGMQQKQIVLSAGA-D---KRIIG  400 (540)
Q Consensus       350 ------------------------~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~-d---g~i~i  400 (540)
                                              .+.++|+.++.......... .......+..+.|++++++++.... +   ..+.+
T Consensus       205 ~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~  284 (465)
T d1xfda1         205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL  284 (465)
T ss_dssp             CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred             ccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEE
Confidence                                    24455554433211000000 0112234678899999886665433 2   25888


Q ss_pred             EECCCCCeeeeec--cCcc----EEEEeecCCCCCceEEEEEcCCC--eEEEEECCCCcceeeeeccccccCccccCeEE
Q 009203          401 FDAGVGRADFKHQ--IESK----CMSVLPNPCDFNLFMVQTGTPGR--QLRLYDIRLRQTEIHAFGWKQESSESQSALIN  472 (540)
Q Consensus       401 wd~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~  472 (540)
                      +|..++++.....  ....    .....|.+++....++.....+|  .+..+++........ -.....+......|..
T Consensus       285 ~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~-~~~~~~LT~G~w~V~~  363 (465)
T d1xfda1         285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS-NDNIQSITSGDWDVTK  363 (465)
T ss_dssp             EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS-SCCCCBSCCSSSCEEE
T ss_pred             EcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCC-CceeEEeccCCceEEE
Confidence            9999988754432  1221    12345667665432332322332  344443321110000 0000122333455666


Q ss_pred             E-EEcCCCCEEE-EEeCC--CcEEEEeccCCCC---cccccccccccceeEEEEcCCCCEEEEEE
Q 009203          473 Q-SWSPDGLYIT-SGSAD--PVIHLFDIRYSAN---KPSQSIRAHQKRVFKAVWHYSHPLLISIS  530 (540)
Q Consensus       473 ~-~~sp~g~~l~-sg~~d--g~i~iwd~~~~~~---~~~~~~~~h~~~i~~l~~s~~~~~l~s~~  530 (540)
                      + .|+.+++.|. ++..+  +.-.+|.+.....   +++..-........++.|||++++++..+
T Consensus       364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~  428 (465)
T d1xfda1         364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (465)
T ss_dssp             EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence            5 6888877654 45433  3445665543212   22222223344678999999999887544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.74  E-value=7e-06  Score=73.89  Aligned_cols=229  Identities=8%  Similarity=-0.012  Sum_probs=147.7

Q ss_pred             eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCC
Q 009203          279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERD  358 (540)
Q Consensus       279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~  358 (540)
                      +..|++....|.-.   +-..+.|..||..++.    ...+..    ...+.++++.+ ++.++++ +.+ .|.++|..+
T Consensus        22 gp~wd~~~~~l~wv---Di~~~~I~r~d~~~g~----~~~~~~----~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~t   87 (295)
T d2ghsa1          22 GPTFDPASGTAWWF---NILERELHELHLASGR----KTVHAL----PFMGSALAKIS-DSKQLIA-SDD-GLFLRDTAT   87 (295)
T ss_dssp             EEEEETTTTEEEEE---EGGGTEEEEEETTTTE----EEEEEC----SSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTT
T ss_pred             CCeEECCCCEEEEE---ECCCCEEEEEECCCCe----EEEEEC----CCCcEEEEEec-CCCEEEE-EeC-ccEEeeccc
Confidence            46788755544433   1578899999998762    222221    24588999988 7766664 444 588999998


Q ss_pred             CCCccccceeec---ccCCcceeEEEeccCCCEEEEEeC----CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCce
Q 009203          359 AEDSWKPKALHR---NLHSSAVMGVAGMQQKQIVLSAGA----DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       359 ~~~~~~~~~~~~---~~~~~~v~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (540)
                      ++.    ..+..   ......++.+.+.|+|++.++...    .+.-.+|.+..++.......-.....+.+++++.  .
T Consensus        88 g~~----~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~--~  161 (295)
T d2ghsa1          88 GVL----TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGT--T  161 (295)
T ss_dssp             CCE----EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSC--E
T ss_pred             cee----eEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCc--e
Confidence            863    22221   112346889999999997776543    2244566666665544443344556788888773  3


Q ss_pred             EEEEEcCCCeEEEEECCCCccee-eeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccc
Q 009203          432 MVQTGTPGRQLRLYDIRLRQTEI-HAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      ++++.+..+.|..|++....... ..........+..+....++++.+|++.++.-..+.|..||.+   ++.+..+...
T Consensus       162 l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~---G~~~~~i~lP  238 (295)
T d2ghsa1         162 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD---GNHIARYEVP  238 (295)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT---CCEEEEEECS
T ss_pred             EEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC---CcEeeEecCC
Confidence            66777888999999886432111 0000001223344567889999999988887778889999976   6777777655


Q ss_pred             ccceeEEEEc-CCCCEE-EEEE
Q 009203          511 QKRVFKAVWH-YSHPLL-ISIS  530 (540)
Q Consensus       511 ~~~i~~l~~s-~~~~~l-~s~~  530 (540)
                      ...+++++|- +|.+.| +|..
T Consensus       239 ~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         239 GKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             CSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCceEEEEEeCCCCCEEEEEEC
Confidence            5679999996 666654 4433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.8e-07  Score=86.87  Aligned_cols=227  Identities=7%  Similarity=0.027  Sum_probs=135.1

Q ss_pred             EEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEe---------cCCc
Q 009203          280 IAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGG---------SDHA  350 (540)
Q Consensus       280 ~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---------~dg~  350 (540)
                      ..|.+++.++..     ..+|.|.+||+.++...   ..+.......-.+....|+| |++.++...         ..+.
T Consensus        22 ~~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~   92 (465)
T d1xfda1          22 AKWISDTEFIYR-----EQKGTVRLWNVETNTST---VLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGY   92 (465)
T ss_dssp             CCBSSSSCBCCC-----CSSSCEEEBCGGGCCCE---EEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSE
T ss_pred             CEEeCCCcEEEE-----eCCCcEEEEECCCCCEE---EEEcCccccccccceeEECC-CCCeEEEEEcccceeEeecccc
Confidence            568888887665     57889999999987542   22222222233577889999 999887764         3567


Q ss_pred             EEEEecCCCCCccccceee-cccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC--------------
Q 009203          351 VVLWSERDAEDSWKPKALH-RNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE--------------  415 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------  415 (540)
                      +.+||+.++..    ..+. .......+....|||||+.|+... ++.|.+.+...+..+.....+              
T Consensus        93 ~~i~d~~~~~~----~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vy  167 (465)
T d1xfda1          93 YVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY  167 (465)
T ss_dssp             EEEEESSSCCC----EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred             EEEEEccCCce----eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhh
Confidence            89999998873    2222 122344566789999999998876 567888888766554332111              


Q ss_pred             -----ccEEEEeecCCCCCceEEEEEc-CCC---------------------------------eEEEEECCCCcceeee
Q 009203          416 -----SKCMSVLPNPCDFNLFMVQTGT-PGR---------------------------------QLRLYDIRLRQTEIHA  456 (540)
Q Consensus       416 -----~~~~~~~~~~~~~~~~~l~~~~-~dg---------------------------------~v~i~d~~~~~~~~~~  456 (540)
                           ..-.++.|+|++   .+|+... .+.                                 .+.++|+.++......
T Consensus       168 eee~~~~~~a~~WSPDg---k~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~  244 (465)
T d1xfda1         168 EEEILKTHIAHWWSPDG---TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM  244 (465)
T ss_dssp             HHTTSSSSEEEEECTTS---SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred             hhhhccccceEEECCCC---CeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEE
Confidence                 112467789988   4555432 122                                 2344454433321111


Q ss_pred             eccccccCccccCeEEEEEcCCCCEEEEEeC-C---CcEEEEeccCCCCccccccccc-ccce----eEEEEcCCCCEE
Q 009203          457 FGWKQESSESQSALINQSWSPDGLYITSGSA-D---PVIHLFDIRYSANKPSQSIRAH-QKRV----FKAVWHYSHPLL  526 (540)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~-d---g~i~iwd~~~~~~~~~~~~~~h-~~~i----~~l~~s~~~~~l  526 (540)
                      .. ..........+..+.|+|++++++.... +   ..|.++|..+  +.....+..+ .+.|    ....|++||+.+
T Consensus       245 ~~-~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~t--g~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         245 MP-PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT--GVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CC-CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT--CCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             ec-cCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCC--CcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence            10 0011122335788999999987665432 2   2577788877  4433332221 2222    346789999743

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.50  E-value=0.00014  Score=67.89  Aligned_cols=280  Identities=9%  Similarity=0.042  Sum_probs=140.5

Q ss_pred             CCcEEEEEeCCc-----------eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          235 NEQLFVTSALDG-----------VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       235 ~~~~l~tg~~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      +|++++.|+.+.           .+.+||..++.........     ..|.....+.++.++|.+++.|   +.....+.
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-----~~~~~~~~~~~~~~~g~i~v~G---g~~~~~~~  101 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-----TKHDMFCPGISMDGNGQIVVTG---GNDAKKTS  101 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-----CSCCCSSCEEEECTTSCEEEEC---SSSTTCEE
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC-----CCcccceeEEEEecCCcEEEee---cCCCccee
Confidence            477777776421           3778999987643322111     2333344567889999988887   22346899


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC------CcEEEEecCCCCCccccce----eecccC
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD------HAVVLWSERDAEDSWKPKA----LHRNLH  373 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~----~~~~~~  373 (540)
                      +||..+..   .. .....+. ...-.+.+..+ ++.+++.|+.+      ..+.+||..+.+-......    .....+
T Consensus       102 ~yd~~~~~---w~-~~~~~~~-~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~  175 (387)
T d1k3ia3         102 LYDSSSDS---WI-PGPDMQV-ARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK  175 (387)
T ss_dssp             EEEGGGTE---EE-ECCCCSS-CCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT
T ss_pred             EecCccCc---cc-ccccccc-cccccceeeec-CCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccc
Confidence            99998752   12 2221111 12234566677 88999888753      3589999987642100000    000001


Q ss_pred             C-----cceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeecc---------CccEEEEeecCCCCCceEEEEEcCC
Q 009203          374 S-----SAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQI---------ESKCMSVLPNPCDFNLFMVQTGTPG  439 (540)
Q Consensus       374 ~-----~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~d  439 (540)
                      .     ..-..+...++|..++.+..++.+.++|..+.........         .....++.....+  +.+++.|+..
T Consensus       176 ~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~v~v~GG~~  253 (387)
T d1k3ia3         176 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK--GKILTFGGSP  253 (387)
T ss_dssp             TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT--TEEEEECCBS
T ss_pred             cceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccC--CceEEEEecc
Confidence            0     0111122345677777777777777888776543221100         0111122221111  1455555432


Q ss_pred             --------CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-----------cEEEEeccCCC
Q 009203          440 --------RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-----------VIHLFDIRYSA  500 (540)
Q Consensus       440 --------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-----------~i~iwd~~~~~  500 (540)
                              ....++++................. ....-.+....+||++++.|+.++           .+.+||..+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~  332 (387)
T d1k3ia3         254 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  332 (387)
T ss_dssp             SSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCCCCcccceeecccccccccCCCceeeccccc-cccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCe
Confidence                    1233444332221111110010111 111223455668999999988531           47889987632


Q ss_pred             CcccccccccccceeEEEEcCCCCEEEEEEc
Q 009203          501 NKPSQSIRAHQKRVFKAVWHYSHPLLISISS  531 (540)
Q Consensus       501 ~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~  531 (540)
                      ...+..+......=....+.+||++|+.|+.
T Consensus       333 W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         333 FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence            2233222211100112345789999999884

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.44  E-value=7e-06  Score=73.14  Aligned_cols=234  Identities=10%  Similarity=0.011  Sum_probs=116.4

Q ss_pred             EEecC-CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC--eEEEEe
Q 009203          230 SLNPV-NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS--QISVLN  306 (540)
Q Consensus       230 ~~spd-~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~--~i~vwd  306 (540)
                      ..+|| .|+.+|-.+ +|.|.+.|+..++. ..+        ..+...+...+|||||+.||.....++.+.  .|.+++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~L--------t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~   74 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKI--------VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN   74 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEE--------ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEE--------ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEE
Confidence            35675 144555443 45677778887653 233        234455788999999999987633333333  466667


Q ss_pred             cCCCCCceeEEeecCCC---CcccceeEEEEeCCCCCEEEEEecC------CcEEEEecCCCCCccccceeecccCCcce
Q 009203          307 LNKTKGRACVTFLDDKP---HVKGIINSIIFLPWENPCFATGGSD------HAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       307 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      ..++   ...+......   ..........|+| +++.|+.....      ..+...+...+..    ..    .+....
T Consensus        75 ~~~g---~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~  142 (281)
T d1k32a2          75 GENG---EIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINF----VP----LNLGPA  142 (281)
T ss_dssp             TTTT---EEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTEE----EE----CCSCSC
T ss_pred             ecCC---ceEEeeecCCCccCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCcee----EE----ecCCcc
Confidence            7655   2222211100   1122356788999 99888775332      2244455544331    11    122223


Q ss_pred             eEEEeccCCCEEEEEeCCC-----------eEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcC--CCeEEE
Q 009203          378 MGVAGMQQKQIVLSAGADK-----------RIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTP--GRQLRL  444 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~v~i  444 (540)
                      ..+.+.+++..++......           ...++.....................+.++    ..+.....  ...|.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~  218 (281)
T d1k32a2         143 THILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH----RIYFITDIDGFGQIYS  218 (281)
T ss_dssp             SEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT----EEEEEECTTSSCEEEE
T ss_pred             ceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecc----ccceecccccccceEE
Confidence            3333333333333322211           111111111111111222222333334443    23333333  345778


Q ss_pred             EECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC
Q 009203          445 YDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS  499 (540)
Q Consensus       445 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~  499 (540)
                      +|+.+.......       ......  ...|+|||+.|+.. .++.|+++|+.++
T Consensus       219 ~d~~g~~~~~lt-------~~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g  263 (281)
T d1k32a2         219 TDLDGKDLRKHT-------SFTDYY--PRHLNTDGRRILFS-KGGSIYIFNPDTE  263 (281)
T ss_dssp             EETTSCSCEECC-------CCCSSC--EEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred             EeCCCCceEEee-------cCCCcc--cccCcCCCCEEEEE-eCCEEEEEECCCC
Confidence            888766543211       111122  34689999998864 4688999999873

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.30  E-value=0.00074  Score=60.13  Aligned_cols=196  Identities=12%  Similarity=0.053  Sum_probs=121.5

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEE
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQIS  303 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~  303 (540)
                      ..+.++++.++ +.++++ +.+ .+.++|..+++... +.. ...  ......++.+.+.|+|++.++........+.-.
T Consensus        59 ~~~~~i~~~~d-g~l~va-~~~-gl~~~d~~tg~~~~-l~~-~~~--~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~  131 (295)
T d2ghsa1          59 FMGSALAKISD-SKQLIA-SDD-GLFLRDTATGVLTL-HAE-LES--DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGS  131 (295)
T ss_dssp             SCEEEEEEEET-TEEEEE-ETT-EEEEEETTTCCEEE-EEC-SST--TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEE
T ss_pred             CCcEEEEEecC-CCEEEE-EeC-ccEEeecccceeeE-Eee-eec--CCCcccceeeEECCCCCEEEEecccccccccee
Confidence            56889999985 776665 455 58889998876322 211 110  112235788999999997776532223344556


Q ss_pred             EEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCE-EEEEecCCcEEEEecCCCCCc--cccce-eecccCCcceeE
Q 009203          304 VLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPC-FATGGSDHAVVLWSERDAEDS--WKPKA-LHRNLHSSAVMG  379 (540)
Q Consensus       304 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~s~~~dg~i~iwd~~~~~~~--~~~~~-~~~~~~~~~v~~  379 (540)
                      +|.+..+   ........    -...+.++|++ +++. +++.+..+.|..|++......  ..... ....+..+....
T Consensus       132 l~~~~~g---~~~~~~~~----~~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG  203 (295)
T d2ghsa1         132 IYHVAKG---KVTKLFAD----ISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG  203 (295)
T ss_dssp             EEEEETT---EEEEEEEE----ESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred             EeeecCC---cEEEEeec----cCCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccc
Confidence            6766654   22222221    23467899999 6664 556666788999887543211  11111 112234456788


Q ss_pred             EEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccC-ccEEEEeecCCCCCceEEEEE
Q 009203          380 VAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIE-SKCMSVLPNPCDFNLFMVQTG  436 (540)
Q Consensus       380 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  436 (540)
                      +++..+|++.++.-..+.|..||.. |+.+...... ..+.+++|-..+.+ .+++|.
T Consensus       204 ~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T~~~FGG~d~~-~LyvTt  259 (295)
T d2ghsa1         204 SVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDAS-RLLVTS  259 (295)
T ss_dssp             EEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSC-EEEEEE
T ss_pred             eEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceEEEEEeCCCCC-EEEEEE
Confidence            9999999988887788899999975 7777666654 45778888644333 244443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=0.0014  Score=56.44  Aligned_cols=258  Identities=11%  Similarity=0.091  Sum_probs=155.5

Q ss_pred             ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCc
Q 009203          246 GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHV  325 (540)
Q Consensus       246 g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  325 (540)
                      ..|.|-|+.......+....           --+.-.+|..+.||.-     ...++++||+++.   ..+....-    
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~-----------AdsAIMhP~~~IiALr-----ag~~LQiFnletK---~klks~~~----  101 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPIS-----------ADSAIMNPASKVIALK-----AGKTLQIFNIEMK---SKMKAHTM----  101 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECC-----------CSEEEECSSSSEEEEE-----ETTEEEEEETTTT---EEEEEEEC----
T ss_pred             ceEEEEECCCCCcceecccc-----------hhhhhcCCCCcEEEEe-----cCCeEEEEehhHh---hhhceEEc----
Confidence            57889999876643322211           1256678988888875     3678999999985   44554443    


Q ss_pred             ccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecc--cCCcceeEEEeccCCCEEEEEeC-------CC
Q 009203          326 KGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRN--LHSSAVMGVAGMQQKQIVLSAGA-------DK  396 (540)
Q Consensus       326 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~-------dg  396 (540)
                      ...|.--.|-  +.+.|+..+ +..|+-|+++....  ..+.+.+.  -....|.....+++.++++..+-       .|
T Consensus       102 ~e~VvfWkWi--s~~~L~lVT-~taVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G  176 (327)
T d1utca2         102 TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG  176 (327)
T ss_dssp             SSCCCEEEES--SSSEEEEEC-SSEEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred             CCCcEEEEec--CCCEEEEEc-CCceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeE
Confidence            3457777787  445565555 36799999965432  12233221  12356777788899998876542       46


Q ss_pred             eEEEEECCCCCeeeeeccCccEEEEe---ecCCCCCceEEEE---EcCCCeEEEEECCCCcc---ee--eeeccccccCc
Q 009203          397 RIIGFDAGVGRADFKHQIESKCMSVL---PNPCDFNLFMVQT---GTPGRQLRLYDIRLRQT---EI--HAFGWKQESSE  465 (540)
Q Consensus       397 ~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~---~~~dg~v~i~d~~~~~~---~~--~~~~~~~~~~~  465 (540)
                      .+.+|..+.+..-. .  ++++.++.   .........+++.   +...+.+.+.++.....   ..  ...........
T Consensus       177 ~mQLYS~er~~sQ~-i--eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea  253 (327)
T d1utca2         177 AMQLYSVDRKVSQP-I--EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA  253 (327)
T ss_dssp             EEEEEETTTTEEEE-E--CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTC
T ss_pred             EEEEEEeccCcCcc-c--cceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccc
Confidence            78899988654321 1  12222221   1111111122222   23346899999876321   11  11111111122


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCCcEE
Q 009203          466 SQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDLNIG  536 (540)
Q Consensus       466 ~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg~v~  536 (540)
                      -..-..++..|+....+..-+.-|.|++||+.+  +.++..-+-....|...+-+.+..-++....+|.|.
T Consensus       254 ~~DFPvamqvs~kygiiyviTK~G~i~lyDleT--gt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         254 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET--GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTCCEEEEEEETTTTEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cCCcEEEEEeeccCCEEEEEecCcEEEEEEccc--ccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            345577889999888999999999999999999  677766665566777655555555566666788764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.19  E-value=8.3e-05  Score=65.83  Aligned_cols=111  Identities=12%  Similarity=0.119  Sum_probs=70.1

Q ss_pred             EEEecC--CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec-C-----CcE
Q 009203          280 IAWHPQ--GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS-D-----HAV  351 (540)
Q Consensus       280 ~~~~~~--~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-d-----g~i  351 (540)
                      +..+||  |+.++..     .++.|.+.|+.++..   .+...    +.+.+...+|+| ||+.|+.... +     ..|
T Consensus         4 ~~~sPdi~G~~v~f~-----~~~dl~~~d~~~g~~---~~Lt~----~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i   70 (281)
T d1k32a2           4 LLLNPDIHGDRIIFV-----CCDDLWEHDLKSGST---RKIVS----NLGVINNARFFP-DGRKIAIRVMRGSSLNTADL   70 (281)
T ss_dssp             CCEEEEEETTEEEEE-----ETTEEEEEETTTCCE---EEEEC----SSSEEEEEEECT-TSSEEEEEEEESTTCCEEEE
T ss_pred             cccCCCCCCCEEEEE-----eCCcEEEEECCCCCE---EEEec----CCCcccCEEECC-CCCEEEEEEeeCCCCCceEE
Confidence            346788  9988875     456788889987632   22222    245688899999 9998886542 2     247


Q ss_pred             EEEecCCCCCccccceeec-----ccCCcceeEEEeccCCCEEEEEeCC------CeEEEEECCCCC
Q 009203          352 VLWSERDAEDSWKPKALHR-----NLHSSAVMGVAGMQQKQIVLSAGAD------KRIIGFDAGVGR  407 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~-----~~~~~~v~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~  407 (540)
                      .+++..+++.    ..+..     ...........|+|+|+.|+.....      ..+...+...+.
T Consensus        71 ~~~~~~~g~~----~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2          71 YFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             EEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             EEEEecCCce----EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence            7788877763    22211     1122345678899999998876442      234555555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.98  E-value=0.0003  Score=64.07  Aligned_cols=236  Identities=13%  Similarity=0.146  Sum_probs=133.8

Q ss_pred             eEEEec---CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCC-CCCEEEEEecC------
Q 009203          279 DIAWHP---QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPW-ENPCFATGGSD------  348 (540)
Q Consensus       279 ~~~~~~---~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~s~~~d------  348 (540)
                      .+.+..   ||++|++.   +..+..|.+.|+.+.   ++...... + ....+..+...+. +..+++.++.+      
T Consensus        89 ~~S~TdGtyDGrylFVN---Dkan~RVAvIdl~~f---kt~kIi~i-P-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pn  160 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMN---DKANTRVARVRCDVM---KCDAILEI-P-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVN  160 (459)
T ss_dssp             EEEEETTEEEEEEEEEE---ETTTTEEEEEETTTT---EEEEEEEC-S-SCCSEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred             cccccCCccceeEEEEE---cCCCceEEEEECcce---eeeEEEec-C-CCCCCceeecccCCCeEEEEccCccccccCC
Confidence            455543   78888876   368899999999986   44333322 1 1233666666431 44566655542      


Q ss_pred             ------------CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCC--------------------
Q 009203          349 ------------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADK--------------------  396 (540)
Q Consensus       349 ------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg--------------------  396 (540)
                                  +.+.++|..+.+..+++.      -.+....+.++++|+++++.+.+.                    
T Consensus       161 dg~~l~d~~~y~~~~t~ID~~tm~V~~QV~------V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~  234 (459)
T d1fwxa2         161 DGTNMEDVANYVNVFTAVDADKWEVAWQVL------VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVF  234 (459)
T ss_dssp             SSSSTTCGG-EEEEEEEEETTTTEEEEEEE------ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred             CCccccchhhcceEEEEEecCCceEEEEee------eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEe
Confidence                        235678888776543332      123466889999999999876431                    


Q ss_pred             ------------------eEEEEECCCC---CeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceee
Q 009203          397 ------------------RIIGFDAGVG---RADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIH  455 (540)
Q Consensus       397 ------------------~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~  455 (540)
                                        .+.+.|.+..   ..+...........+..+|++.  .+++++.-+.++.++|++.......
T Consensus       235 n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGK--yi~VaGKLs~tVSViD~~Ki~~~~~  312 (459)
T d1fwxa2         235 NIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKK--HLCVAGKLSPTVTVLDVTRFDAVFY  312 (459)
T ss_dssp             EHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSS--EEEEECTTSSBEEEEEGGGHHHHHH
T ss_pred             chHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCC--EEEEeCCcCCcEEEEEehhhhhhhc
Confidence                              1234443321   1111222333445567778773  3566777899999999974221110


Q ss_pred             e-e---ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCC--------CCccccccc-----ccccceeEEE
Q 009203          456 A-F---GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYS--------ANKPSQSIR-----AHQKRVFKAV  518 (540)
Q Consensus       456 ~-~---~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~--------~~~~~~~~~-----~h~~~i~~l~  518 (540)
                      . .   ..........-.....+|+.+|....+---|..|.-|++...        ....+..+.     +|.....+-.
T Consensus       313 ~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t  392 (459)
T d1fwxa2         313 ENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGET  392 (459)
T ss_dssp             SCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTS
T ss_pred             ccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCc
Confidence            0 0   000000112335667799988876667778999999998631        012222332     2322111112


Q ss_pred             EcCCCCEEEEEE
Q 009203          519 WHYSHPLLISIS  530 (540)
Q Consensus       519 ~s~~~~~l~s~~  530 (540)
                      ..|||++|++..
T Consensus       393 ~~~dgk~l~~~n  404 (459)
T d1fwxa2         393 LDATNDWLVCLS  404 (459)
T ss_dssp             TTCCSSEEEEEE
T ss_pred             CCCCCCEEEEec
Confidence            468899988875

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=0.0098  Score=51.42  Aligned_cols=206  Identities=13%  Similarity=0.074  Sum_probs=124.4

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCC
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDS  300 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~  300 (540)
                      .+...+.+|+|.+.++.++.+-..++.|+..++..... ..+..       .....+.++++..-+..|+.+   ....+
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~-------~~~~~p~~iAvD~~~~~lY~~---d~~~~  101 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIR-------QDLGSPEGIALDHLGRTIFWT---DSQLD  101 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEEC-------TTCCCEEEEEEETTTTEEEEE---ETTTT
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEE-------eccccccEEEEeccCCeEEEe---ccCCC
Confidence            34456888999985455555556678888888875443 22221       112347889998767766654   16778


Q ss_pred             eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCc--EEEEecCCCCCccccceeecccCCccee
Q 009203          301 QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHA--VVLWSERDAEDSWKPKALHRNLHSSAVM  378 (540)
Q Consensus       301 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~  378 (540)
                      .|.+.+++...   +......   ....+..+++.|..+.++.+-...+.  |.--++.....    ..+.. ..-....
T Consensus       102 ~I~~~~~dg~~---~~~l~~~---~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~----~~i~~-~~~~~P~  170 (263)
T d1npea_         102 RIEVAKMDGTQ---RRVLFDT---GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----RILAQ-DNLGLPN  170 (263)
T ss_dssp             EEEEEETTSCS---CEEEECS---SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----EEEEC-TTCSCEE
T ss_pred             EEEEEecCCce---EEEEecc---cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc----eeeee-ecccccc
Confidence            99999998542   2222222   12458899999945544445333233  44445654432    22221 1334568


Q ss_pred             EEEeccCCCEEEEE-eCCCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          379 GVAGMQQKQIVLSA-GADKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       379 ~l~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      +|++.+.++.|+.+ ...+.|...|+................+++... +   .+..+-...+.|...|..+++.
T Consensus       171 glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~~-~---~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         171 GLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYG-K---NLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEET-T---EEEEEETTTTEEEEEETTTTEE
T ss_pred             eEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEEC-C---EEEEEECCCCEEEEEECCCCcc
Confidence            99998877777555 457789999997554433223223345666553 2   4556666778888888887664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.55  E-value=0.04  Score=53.70  Aligned_cols=165  Identities=14%  Similarity=0.113  Sum_probs=94.3

Q ss_pred             eEEEecC----CCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecC-CCCccccee-EEEEeCCCCCEEEEEec-----
Q 009203          279 DIAWHPQ----GNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDD-KPHVKGIIN-SIIFLPWENPCFATGGS-----  347 (540)
Q Consensus       279 ~~~~~~~----~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~-~~~~~p~~~~~l~s~~~-----  347 (540)
                      .+++.++    +.+|+.+    +.|+.|.-.|..+++.   +-.+.. .......++ .-.+.   +..++.|..     
T Consensus       110 Gv~~~~~~~~~~~~v~~~----t~dg~l~Alda~tG~~---~w~~~~~d~~~~~~~t~~P~v~---~~~vivg~~~~e~~  179 (596)
T d1w6sa_         110 GLAYWPGDGKTPALILKT----QLDGNVAALNAETGET---VWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELG  179 (596)
T ss_dssp             CCEEECCCSSSCCEEEEE----CTTSEEEEEETTTCCE---EEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGT
T ss_pred             eeEEecCCCCCceEEEEE----eCCCCeEeeccccCce---eccccccccccccccccCCcEE---CCeEEEeecccccc
Confidence            4566543    2367777    8899999999999843   222221 111111111 11121   234555543     


Q ss_pred             -CCcEEEEecCCCCCccccceeecc---------------------------------cCCcceeEEEeccCCCEEEEEe
Q 009203          348 -DHAVVLWSERDAEDSWKPKALHRN---------------------------------LHSSAVMGVAGMQQKQIVLSAG  393 (540)
Q Consensus       348 -dg~i~iwd~~~~~~~~~~~~~~~~---------------------------------~~~~~v~~l~~s~~~~~l~~~~  393 (540)
                       .|.|+-+|..+++.+|+.......                                 +....-..+++.+...+++.+.
T Consensus       180 ~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~t  259 (596)
T d1w6sa_         180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (596)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             ccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccc
Confidence             488999999999988765433100                                 0011122445666667776654


Q ss_pred             CC----------------CeEEEEECCCCCeeeeeccC----------ccEEEE-eecCCCCCceEEEEEcCCCeEEEEE
Q 009203          394 AD----------------KRIIGFDAGVGRADFKHQIE----------SKCMSV-LPNPCDFNLFMVQTGTPGRQLRLYD  446 (540)
Q Consensus       394 ~d----------------g~i~iwd~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~l~~~~~dg~v~i~d  446 (540)
                      .+                ..|.-.|+++|+.+..++..          ....-+ ....++.....++....+|.+.++|
T Consensus       260 g~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlD  339 (596)
T d1w6sa_         260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD  339 (596)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeec
Confidence            32                35778899999987654321          111111 1223333335788889999999999


Q ss_pred             CCCCcce
Q 009203          447 IRLRQTE  453 (540)
Q Consensus       447 ~~~~~~~  453 (540)
                      ..+++..
T Consensus       340 r~tG~~i  346 (596)
T d1w6sa_         340 RTDGALV  346 (596)
T ss_dssp             TTTCCEE
T ss_pred             CCCCcee
Confidence            9988754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.48  E-value=0.0095  Score=54.11  Aligned_cols=232  Identities=9%  Similarity=-0.008  Sum_probs=129.8

Q ss_pred             EEEEe---cCCCcEEEEE-eCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC--CeEEEEeecCCCC--
Q 009203          228 SLSLN---PVNEQLFVTS-ALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG--NSLFSAHTADSGD--  299 (540)
Q Consensus       228 ~l~~s---pd~~~~l~tg-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~--~~l~s~~~~~~~d--  299 (540)
                      .+++.   +| |++|+.. ..+++|.+-|+.+.+....+..       .....+..++..+++  .+++..    +..  
T Consensus        89 ~~S~TdGtyD-GrylFVNDkan~RVAvIdl~~fkt~kIi~i-------Pn~~~~HG~r~~~~p~T~YV~~~----~e~~v  156 (459)
T d1fwxa2          89 HMSFTEGKYD-GRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWPRSNYVFCN----GEDET  156 (459)
T ss_dssp             EEEEETTEEE-EEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSSBCSEEEEE----ECSCE
T ss_pred             cccccCCccc-eeEEEEEcCCCceEEEEECcceeeeEEEec-------CCCCCCceeecccCCCeEEEEcc----Ccccc
Confidence            55554   35 6666555 4788999999998876443322       122345566665544  366554    221  


Q ss_pred             ----------------CeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCC--------------
Q 009203          300 ----------------SQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDH--------------  349 (540)
Q Consensus       300 ----------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg--------------  349 (540)
                                      +.+.++|..+.+.  ..+..-     .+....+.+++ +|.++++.+.+.              
T Consensus       157 P~pndg~~l~d~~~y~~~~t~ID~~tm~V--~~QV~V-----~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~  228 (459)
T d1fwxa2         157 PLVNDGTNMEDVANYVNVFTAVDADKWEV--AWQVLV-----SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEM  228 (459)
T ss_dssp             ESSCSSSSTTCGG-EEEEEEEEETTTTEE--EEEEEE-----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             ccCCCCccccchhhcceEEEEEecCCceE--EEEeee-----CCChhccccCC-CCCEEEEEeccccCCcchhhcccccc
Confidence                            3466788887632  222221     23466889999 888888776431              


Q ss_pred             ------------------------cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC-CCeEEEEECC
Q 009203          350 ------------------------AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA-DKRIIGFDAG  404 (540)
Q Consensus       350 ------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~iwd~~  404 (540)
                                              .+.+-|.+....   ...+..-.-......+.++|||+++++++. +.++.++|++
T Consensus       229 D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~---~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         229 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS---SLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG-----CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             eEEEEechHHhHHhhhcCCcEEeCCceeecccccCC---cceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence                                    123333332110   000000001233567899999999887765 8899999996


Q ss_pred             CCCe------------eeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCC------c---ceeeeecccccc
Q 009203          405 VGRA------------DFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLR------Q---TEIHAFGWKQES  463 (540)
Q Consensus       405 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~------~---~~~~~~~~~~~~  463 (540)
                      .-..            ......+-..+...|+..+   ....+-.-|..|.-|++...      .   .....+. ....
T Consensus       306 Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g---~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~-v~y~  381 (459)
T d1fwxa2         306 RFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG---NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD-VHYQ  381 (459)
T ss_dssp             GHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS---EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE-CSSC
T ss_pred             hhhhhhcccCCccccEEeecccCcCccccccCCCc---eEEEEeeccceEEEEecchhhhhhccccCCcceeccc-cccC
Confidence            4211            1223345566777787765   56667778999999998532      1   1111110 0011


Q ss_pred             CccccCeEEEEEcCCCCEEEEEe
Q 009203          464 SESQSALINQSWSPDGLYITSGS  486 (540)
Q Consensus       464 ~~~~~~v~~~~~sp~g~~l~sg~  486 (540)
                      .+|.....+-...|+|++|++..
T Consensus       382 ~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         382 PGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEEEEETTTTSTTCCSSEEEEEE
T ss_pred             CCCCccCcCCcCCCCCCEEEEec
Confidence            23322222224578999999885

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.47  E-value=0.02  Score=55.58  Aligned_cols=164  Identities=12%  Similarity=0.061  Sum_probs=90.5

Q ss_pred             eEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEE-EEeCCCCCEEEEEe------cCCcE
Q 009203          279 DIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSI-IFLPWENPCFATGG------SDHAV  351 (540)
Q Consensus       279 ~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~s~~------~dg~i  351 (540)
                      .+++.  +..|+.+    +.++.+.-.|..+++..........  .....++.- .+.  ++ .++.+.      .+|.|
T Consensus       110 g~a~~--~~~i~~~----~~~g~l~alda~tG~~~w~~~~~~~--~~~~~~t~~p~v~--~~-~vivg~~~~~~~~~G~v  178 (571)
T d2ad6a1         110 GLAYG--AGQIVKK----QANGHLLALDAKTGKINWEVEVCDP--KVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAV  178 (571)
T ss_dssp             CCEEE--TTEEEEE----CTTSEEEEEETTTCCEEEEEECCCG--GGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEE
T ss_pred             cceee--CCeEEEE----eCCCcEEeeehhhhhhhcccccccc--ccccceeecCeEe--CC-eEEEeeccccccccCcE
Confidence            34554  3456666    8899999999999843222221111  011111111 111  33 444444      36789


Q ss_pred             EEEecCCCCCccccceeecc--------------------------------cCCcce-eEEEeccCCCEEEEEeC----
Q 009203          352 VLWSERDAEDSWKPKALHRN--------------------------------LHSSAV-MGVAGMQQKQIVLSAGA----  394 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~~--------------------------------~~~~~v-~~l~~s~~~~~l~~~~~----  394 (540)
                      +-+|+.+++.+|+.......                                .....+ ...++.+....++.+..    
T Consensus       179 ~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p  258 (571)
T d2ad6a1         179 NAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAP  258 (571)
T ss_dssp             EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC
T ss_pred             EEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccC
Confidence            99999999987754432100                                001111 23456666677666554    


Q ss_pred             ------------CCeEEEEECCCCCeeeeeccC----------ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          395 ------------DKRIIGFDAGVGRADFKHQIE----------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       395 ------------dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                                  ...+.-.|.++|+.+..++..          ..........++.....++.++.+|.+.++|..+++.
T Consensus       259 ~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~  338 (571)
T d2ad6a1         259 WNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL  338 (571)
T ss_dssp             SCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcE
Confidence                        346788899999987654421          1111111111221223677888999999999998875


Q ss_pred             e
Q 009203          453 E  453 (540)
Q Consensus       453 ~  453 (540)
                      .
T Consensus       339 i  339 (571)
T d2ad6a1         339 I  339 (571)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.041  Score=47.44  Aligned_cols=234  Identities=8%  Similarity=-0.048  Sum_probs=134.7

Q ss_pred             eEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce-eEEeecCCCCc
Q 009203          247 VIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA-CVTFLDDKPHV  325 (540)
Q Consensus       247 ~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~  325 (540)
                      .|+-.++.+.... .+.        .....+.+++|++..+.|+-+   +...+.|.-.+++...... .......   .
T Consensus        11 ~I~~~~l~~~~~~-~~~--------~~~~~~~~id~d~~~~~lYw~---D~~~~~I~~~~l~~~~~~~~~~~~~~~---~   75 (266)
T d1ijqa1          11 EVRKMTLDRSEYT-SLI--------PNLRNVVALDTEVASNRIYWS---DLSQRMICSTQLDRAHGVSSYDTVISR---D   75 (266)
T ss_dssp             SEEEEETTSCCCE-EEE--------CSCSSEEEEEEETTTTEEEEE---ETTTTEEEEEEC--------CEEEECS---S
T ss_pred             eEEEEECCCCcce-eee--------CCCCceEEEEEEeCCCEEEEE---ECCCCEEEEEEecCCCCCcceEEEEeC---C
Confidence            4887888765432 221        122346789999988877665   2567778777775421111 1122221   1


Q ss_pred             ccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEe--CCCeEEEEEC
Q 009203          326 KGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAG--ADKRIIGFDA  403 (540)
Q Consensus       326 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~--~dg~i~iwd~  403 (540)
                      ...+.++++.+..+++.++-...+.|.+.++.....    ..+. ........++++.|...+|+...  ..+.|...++
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~----~~~~-~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~  150 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  150 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE----EEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceE----EEEE-cCCCCCcceEEEEcccCeEEEeccCCCcceeEecc
Confidence            234678898874555666666678899999987652    2222 22445688999998666655543  3456777777


Q ss_pred             CCCCeeeee-ccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEE
Q 009203          404 GVGRADFKH-QIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYI  482 (540)
Q Consensus       404 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  482 (540)
                      ......... ..-.....++.++.+.  .+..+-...+.|...|+..........     .........++++. ++.++
T Consensus       151 dGs~~~~l~~~~~~~p~gl~iD~~~~--~lYw~d~~~~~I~~~~~dG~~~~~~~~-----~~~~~~~p~~lav~-~~~ly  222 (266)
T d1ijqa1         151 NGVDIYSLVTENIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNGGNRKTILE-----DEKRLAHPFSLAVF-EDKVF  222 (266)
T ss_dssp             TSCCEEEEECSSCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEEE-----CTTTTSSEEEEEEE-TTEEE
T ss_pred             CCCceecccccccceeeEEEeecccc--EEEEecCCcCEEEEEECCCCCEEEEEe-----CCCcccccEEEEEE-CCEEE
Confidence            654433322 2234567788877552  455566777899999997655322211     11222346677776 33444


Q ss_pred             EEEeCCCcEEEEeccCCCCccccccccc
Q 009203          483 TSGSADPVIHLFDIRYSANKPSQSIRAH  510 (540)
Q Consensus       483 ~sg~~dg~i~iwd~~~~~~~~~~~~~~h  510 (540)
                      .+-..++.|...+..+  +.....+...
T Consensus       223 ~td~~~~~I~~~~~~~--g~~~~~~~~~  248 (266)
T d1ijqa1         223 WTDIINEAIFSANRLT--GSDVNLLAEN  248 (266)
T ss_dssp             EEETTTTEEEEEETTT--CCCCEEEECS
T ss_pred             EEECCCCeEEEEECCC--CcceEEEEcC
Confidence            4445677887777665  4444444433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.31  E-value=0.028  Score=51.47  Aligned_cols=122  Identities=11%  Similarity=-0.014  Sum_probs=72.3

Q ss_pred             eEEEecCCCeEEEEeecCC-CCC------eEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-Cc
Q 009203          279 DIAWHPQGNSLFSAHTADS-GDS------QISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-HA  350 (540)
Q Consensus       279 ~~~~~~~~~~l~s~~~~~~-~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-g~  350 (540)
                      ..+...+|+.++.|..... ..+      .+.+||..++.-.........   +.....+.++.+ ++.+++.|+.+ ..
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~---~~~~~~~~~~~~-~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK---HDMFCPGISMDG-NGQIVVTGGNDAKK   99 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS---CCCSSCEEEECT-TSCEEEECSSSTTC
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC---cccceeEEEEec-CCcEEEeecCCCcc
Confidence            3444557887777621100 011      367899998743222222221   222345667888 99999988765 57


Q ss_pred             EEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC------CeEEEEECCCCCe
Q 009203          351 VVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD------KRIIGFDAGVGRA  408 (540)
Q Consensus       351 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~  408 (540)
                      +.+||..+...    ...........-.+.+..+||++++.++.+      ..+.+||..+.+-
T Consensus       100 ~~~yd~~~~~w----~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         100 TSLYDSSSDSW----IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEEEGGGTEE----EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eeEecCccCcc----cccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            99999987653    111111122233456667789999988753      3589999987643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.045  Score=47.16  Aligned_cols=223  Identities=9%  Similarity=-0.062  Sum_probs=121.4

Q ss_pred             CCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcce
Q 009203          298 GDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAV  377 (540)
Q Consensus       298 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v  377 (540)
                      ....|+-.++++...   ......    ...+.+++|++..+.++.+-...+.|.-.++...........+. ......+
T Consensus         8 ~~~~I~~~~l~~~~~---~~~~~~----~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~-~~~~~~p   79 (266)
T d1ijqa1           8 NRHEVRKMTLDRSEY---TSLIPN----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAP   79 (266)
T ss_dssp             CBSSEEEEETTSCCC---EEEECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCC
T ss_pred             CCCeEEEEECCCCcc---eeeeCC----CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEE-eCCCCCc
Confidence            345688889986532   222222    23478999998344444444456777777765432211112221 1123456


Q ss_pred             eEEEeccCCCEEEEE-eCCCeEEEEECCCCCeeee-eccCccEEEEeecCCCCCceEEEEE-cCCCeEEEEECCCCccee
Q 009203          378 MGVAGMQQKQIVLSA-GADKRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLFMVQTG-TPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       378 ~~l~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~v~i~d~~~~~~~~  454 (540)
                      .++++.+.+..|+.+ ...+.|.+.++........ .........++.+|...  .++.+. +..+.|...++.......
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g--~ly~~~~~~~~~I~r~~~dGs~~~~  157 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--FMYWTDWGTPAKIKKGGLNGVDIYS  157 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--EEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccC--eEEEeccCCCcceeEeccCCCceec
Confidence            778887655555544 5567899999986554332 33345667888887542  333333 344567777776544322


Q ss_pred             eeeccccccCccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeccCCCCcccccccccccceeEEEEcCCCCEEEEEEcCC
Q 009203          455 HAFGWKQESSESQSALINQSWSPDGLYITSG-SADPVIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISISSDL  533 (540)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~~~dg  533 (540)
                      ..       ...-..++++++++.++.|..+ ...+.|...+++......+...........+|++. .+.+..+-..++
T Consensus       158 l~-------~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~  229 (266)
T d1ijqa1         158 LV-------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (266)
T ss_dssp             EE-------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             cc-------ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCC
Confidence            11       1223457899999877766655 55688888888753222222222222345667765 233444444556


Q ss_pred             cEEEE
Q 009203          534 NIGLH  538 (540)
Q Consensus       534 ~v~iw  538 (540)
                      .|...
T Consensus       230 ~I~~~  234 (266)
T d1ijqa1         230 AIFSA  234 (266)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            55443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.23  E-value=0.045  Score=52.97  Aligned_cols=204  Identities=9%  Similarity=0.019  Sum_probs=105.8

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCC---CCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCce
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLS---PKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRA  314 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~---~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~  314 (540)
                      .|..++.++.|.-.|..+++.+.++........   ......-..++..  +..++.+    ..++.|.-.|..+++.  
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~----~~~g~l~Alda~tG~~--  139 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVG----TLDGRLIALDAKTGKA--  139 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEE----CTTSEEEEEETTTCCE--
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee--CCeEEEE----eCCCEEEEEECCCCcE--
Confidence            344455667777778777776665432110000   0000001122222  3456666    8899999999988843  


Q ss_pred             eEEeecCCCCccc-cee-EEEEeCCCCCEEEEEec------CCcEEEEecCCCCCccccceeeccc--------------
Q 009203          315 CVTFLDDKPHVKG-IIN-SIIFLPWENPCFATGGS------DHAVVLWSERDAEDSWKPKALHRNL--------------  372 (540)
Q Consensus       315 ~~~~~~~~~~~~~-~v~-~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~--------------  372 (540)
                       +-.......... .+. ...+.  + ..++.+..      .|.|.-+|..+++.+|+........              
T Consensus       140 -~w~~~~~~~~~~~~~~~~p~v~--~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~  215 (560)
T d1kv9a2         140 -IWSQQTTDPAKPYSITGAPRVV--K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK  215 (560)
T ss_dssp             -EEEEECSCTTSSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred             -EeccCccCcccceeeeeeeeee--c-CcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccc
Confidence             222221110000 011 11111  2 23444332      3679999999999888765542211              


Q ss_pred             -----------CCcc-eeEEEeccCCCEEEEEeC-------------------CCeEEEEECCCCCeeeeeccC------
Q 009203          373 -----------HSSA-VMGVAGMQQKQIVLSAGA-------------------DKRIIGFDAGVGRADFKHQIE------  415 (540)
Q Consensus       373 -----------~~~~-v~~l~~s~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~------  415 (540)
                                 .... -..+++.+...+++.+..                   ...|.-.|+++++....++..      
T Consensus       216 ~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd  295 (560)
T d1kv9a2         216 TWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD  295 (560)
T ss_dssp             TCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred             cccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecccccccc
Confidence                       0111 123455666666665432                   235777788998886543321      


Q ss_pred             ----ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcce
Q 009203          416 ----SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTE  453 (540)
Q Consensus       416 ----~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~  453 (540)
                          ....-+....++.....++.+..+|.+.++|..+++..
T Consensus       296 ~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             ccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence                11111111122222246778899999999999988754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.053  Score=46.57  Aligned_cols=219  Identities=7%  Similarity=-0.023  Sum_probs=129.1

Q ss_pred             CceeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEe
Q 009203          276 WPEDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWS  355 (540)
Q Consensus       276 ~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  355 (540)
                      .+.+++|.+..+.|+.+   +..++.|...+++....   ...+..   ....+.++++....+.+.++-...+.|.+.+
T Consensus        37 ~~~~ld~D~~~~~iyws---d~~~~~I~~~~l~g~~~---~~v~~~---~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~  107 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWT---DISEPSIGRASLHGGEP---TTIIRQ---DLGSPEGIALDHLGRTIFWTDSQLDRIEVAK  107 (263)
T ss_dssp             EEEEEEEETTTTEEEEE---ETTTTEEEEEESSSCCC---EEEECT---TCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cEEEEEEEeCCCEEEEE---ECCCCeEEEEEcccCCc---EEEEEe---ccccccEEEEeccCCeEEEeccCCCEEEEEe
Confidence            36679999887777665   26778899988875422   222322   1235889999873444555666678999999


Q ss_pred             cCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCC---CeEEEEECCCCCeeee-eccCccEEEEeecCCCCCce
Q 009203          356 ERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGAD---KRIIGFDAGVGRADFK-HQIESKCMSVLPNPCDFNLF  431 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  431 (540)
                      +.....    ..+. ......+..+++.|...+++.....   +.|..-++........ ...-.....+++++.+.  +
T Consensus       108 ~dg~~~----~~l~-~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~--~  180 (263)
T d1npea_         108 MDGTQR----RVLF-DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS--Q  180 (263)
T ss_dssp             TTSCSC----EEEE-CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTT--E
T ss_pred             cCCceE----EEEe-cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCc--E
Confidence            987653    2222 1233568899999977777655432   2355556654333222 22234557788876652  3


Q ss_pred             EEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccc-cc
Q 009203          432 MVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIR-AH  510 (540)
Q Consensus       432 ~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~h  510 (540)
                      +..+-...+.|...|+.........       .+. ....++++. ++.+..+-...+.|...|..+  ++.+..+. ..
T Consensus       181 lYw~d~~~~~I~~~~~~g~~~~~v~-------~~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~--g~~~~~~~~~~  249 (263)
T d1npea_         181 LCWVDAGTHRAECLNPAQPGRRKVL-------EGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI--SKEMDTFHPHK  249 (263)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEEEE-------ECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTT--TEEEEEECCSS
T ss_pred             EEEEeCCCCEEEEEECCCCCeEEEE-------CCC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCC--CccceEECCCC
Confidence            4456567789999999765432211       111 134577775 343444545667888888876  44443332 22


Q ss_pred             ccceeEEEEcC
Q 009203          511 QKRVFKAVWHY  521 (540)
Q Consensus       511 ~~~i~~l~~s~  521 (540)
                      .....+++..+
T Consensus       250 ~~~~~gi~v~~  260 (263)
T d1npea_         250 QTRLYGITIAL  260 (263)
T ss_dssp             CCCCCCEEEEC
T ss_pred             CCCcceEEEeC
Confidence            23444555543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.19  E-value=0.014  Score=56.78  Aligned_cols=174  Identities=6%  Similarity=0.001  Sum_probs=91.2

Q ss_pred             EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec--CCCCCeEEEE
Q 009203          228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA--DSGDSQISVL  305 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~--~~~d~~i~vw  305 (540)
                      .+++..  + .|+.++.||.+.--|..+++...........    ....++.--.-.++ .++.+...  ....|.|.-+
T Consensus       110 g~a~~~--~-~i~~~~~~g~l~alda~tG~~~w~~~~~~~~----~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~  181 (571)
T d2ad6a1         110 GLAYGA--G-QIVKKQANGHLLALDAKTGKINWEVEVCDPK----VGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAF  181 (571)
T ss_dssp             CCEEET--T-EEEEECTTSEEEEEETTTCCEEEEEECCCGG----GTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEE
T ss_pred             cceeeC--C-eEEEEeCCCcEEeeehhhhhhhccccccccc----cccceeecCeEeCC-eEEEeeccccccccCcEEEE
Confidence            345542  3 4666778898888899998865554321100    00111111111233 44444110  0147889999


Q ss_pred             ecCCCCCceeEEeecCC-------------------------------CCcccce-eEEEEeCCCCCEEEEEec------
Q 009203          306 NLNKTKGRACVTFLDDK-------------------------------PHVKGII-NSIIFLPWENPCFATGGS------  347 (540)
Q Consensus       306 d~~~~~~~~~~~~~~~~-------------------------------~~~~~~v-~~~~~~p~~~~~l~s~~~------  347 (540)
                      |+.+++...........                               ....+.+ ...++.+ ...+++.+..      
T Consensus       182 D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~tg~~~p~~  260 (571)
T d2ad6a1         182 DLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWN  260 (571)
T ss_dssp             ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSC
T ss_pred             ECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeecccccCcc
Confidence            99998443222221100                               0001112 2346666 5556555543      


Q ss_pred             ----------CCcEEEEecCCCCCccccceeecccCC----cceeEEEeccCCC---EEEEEeCCCeEEEEECCCCCeee
Q 009203          348 ----------DHAVVLWSERDAEDSWKPKALHRNLHS----SAVMGVAGMQQKQ---IVLSAGADKRIIGFDAGVGRADF  410 (540)
Q Consensus       348 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~v~~l~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~  410 (540)
                                ...+.-.|.++++..|..+......+.    ..........+++   .++.++.+|.++++|..+|+.+.
T Consensus       261 ~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         261 ETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             GGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEee
Confidence                      245777889999876655543221111    1111222223443   56778899999999999998764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.01  E-value=0.05  Score=52.79  Aligned_cols=203  Identities=9%  Similarity=0.049  Sum_probs=103.2

Q ss_pred             EEEEeCCceEEEEEcCCCCCcceeecccccCC--CCCCCCc-eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCcee
Q 009203          239 FVTSALDGVIRLWQLQSRGSGASLLSTTDCLS--PKHRRWP-EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       239 l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~--~~h~~~V-~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~  315 (540)
                      |..++.++.|.-+|..+++.+.++........  ..-...+ ..+.+.  +..++.+    +.++.+.-.|..+++....
T Consensus        80 vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~----t~~g~l~alda~tG~~~W~  153 (573)
T d1kb0a2          80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVG----AWDGRLIALDAATGKEVWH  153 (573)
T ss_dssp             EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEE----CTTSEEEEEETTTCCEEEE
T ss_pred             EEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEE----ecccceeeeccccccceec
Confidence            44455666777777777776655432111000  0000011 123333  2355566    7888898889888843222


Q ss_pred             EEeecCCCCcccce--e--EEEEeCCCCCEEEEEec------CCcEEEEecCCCCCccccceeeccc-------------
Q 009203          316 VTFLDDKPHVKGII--N--SIIFLPWENPCFATGGS------DHAVVLWSERDAEDSWKPKALHRNL-------------  372 (540)
Q Consensus       316 ~~~~~~~~~~~~~v--~--~~~~~p~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~-------------  372 (540)
                      .......   ...+  .  -+.+   + ..+++++.      .|.|+-+|..+++.+|+........             
T Consensus       154 ~~~~~~~---~~~~~~~~~p~v~---~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  226 (573)
T d1kb0a2         154 QNTFEGQ---KGSLTITGAPRVF---K-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA  226 (573)
T ss_dssp             EETTTTC---CSSCBCCSCCEEE---T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred             ccCccCC---cceEEeecceEEE---e-ccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccc
Confidence            2221111   1111  1  1111   2 34444432      4679999999999877654432110             


Q ss_pred             -------------CCcce-eEEEeccCCCEEEEEeC-------------------CCeEEEEECCCCCeeeeeccC----
Q 009203          373 -------------HSSAV-MGVAGMQQKQIVLSAGA-------------------DKRIIGFDAGVGRADFKHQIE----  415 (540)
Q Consensus       373 -------------~~~~v-~~l~~s~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~----  415 (540)
                                   ....+ ...++.++...++.+..                   ...|.-.|+++++....++..    
T Consensus       227 ~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~  306 (573)
T d1kb0a2         227 RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN  306 (573)
T ss_dssp             TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC
T ss_pred             cccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccc
Confidence                         00111 23455566565554332                   124667788888775543321    


Q ss_pred             ------ccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCccee
Q 009203          416 ------SKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEI  454 (540)
Q Consensus       416 ------~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~  454 (540)
                            ..........++.....++.++.+|.+.++|..+++...
T Consensus       307 wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~  351 (573)
T d1kb0a2         307 WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS  351 (573)
T ss_dssp             SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             ccccccceeeecceecCCCceeeeeeccccceeEEeccccccccc
Confidence                  111111222222222577888999999999999887543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.94  E-value=0.078  Score=51.56  Aligned_cols=177  Identities=7%  Similarity=-0.020  Sum_probs=95.4

Q ss_pred             EEEEecCC---CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCcee-EEEecCCCeEEEEeec--CCCCCe
Q 009203          228 SLSLNPVN---EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPED-IAWHPQGNSLFSAHTA--DSGDSQ  301 (540)
Q Consensus       228 ~l~~spd~---~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~~~~~~l~s~~~~--~~~d~~  301 (540)
                      .+++-++.   +.+++.++.|+.|.-.|..+++....+.......    ...++. -.+.  +..++++...  ....|.
T Consensus       110 Gv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~----~~~~t~~P~v~--~~~vivg~~~~e~~~~G~  183 (596)
T d1w6sa_         110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKV----GSTLTIAPYVV--KDKVIIGSSGAELGVRGY  183 (596)
T ss_dssp             CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGG----TCBCCSCCEEE--TTEEEECCBCGGGTCCCE
T ss_pred             eeEEecCCCCCceEEEEEeCCCCeEeeccccCceecccccccccc----ccccccCCcEE--CCeEEEeeccccccccCc
Confidence            45554421   3468888889999989999998776653211000    011111 1111  3345554110  013589


Q ss_pred             EEEEecCCCCCceeEEeecCC-----------------------------C---CcccceeEEEEeCCCCCEEEEEec--
Q 009203          302 ISVLNLNKTKGRACVTFLDDK-----------------------------P---HVKGIINSIIFLPWENPCFATGGS--  347 (540)
Q Consensus       302 i~vwd~~~~~~~~~~~~~~~~-----------------------------~---~~~~~v~~~~~~p~~~~~l~s~~~--  347 (540)
                      |+-+|+.+++...........                             .   .....-..+++.+ ...++..+..  
T Consensus       184 v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~tg~~  262 (596)
T d1w6sa_         184 LTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNP  262 (596)
T ss_dssp             EEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCC
T ss_pred             eEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeecccccc
Confidence            999999998543332222100                             0   0001122456666 5556555532  


Q ss_pred             --------------CCcEEEEecCCCCCccccceeecccCC----cceeEEEe-ccCC---CEEEEEeCCCeEEEEECCC
Q 009203          348 --------------DHAVVLWSERDAEDSWKPKALHRNLHS----SAVMGVAG-MQQK---QIVLSAGADKRIIGFDAGV  405 (540)
Q Consensus       348 --------------dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~v~~l~~-s~~~---~~l~~~~~dg~i~iwd~~~  405 (540)
                                    ...|.-.|+++++..|..+........    ..+.-+.. ..+|   ..++....+|.+.++|..+
T Consensus       263 ~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~t  342 (596)
T d1w6sa_         263 APWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTD  342 (596)
T ss_dssp             SCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred             cccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCC
Confidence                          234777899999876655544322111    11111221 2234   3677788999999999999


Q ss_pred             CCeeee
Q 009203          406 GRADFK  411 (540)
Q Consensus       406 ~~~~~~  411 (540)
                      |+.+..
T Consensus       343 G~~i~~  348 (596)
T d1w6sa_         343 GALVSA  348 (596)
T ss_dssp             CCEEEE
T ss_pred             Cceeee
Confidence            987653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.87  E-value=0.18  Score=46.78  Aligned_cols=230  Identities=11%  Similarity=0.009  Sum_probs=114.5

Q ss_pred             ceeEEEecCCCeEEEEeec-CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecC-------
Q 009203          277 PEDIAWHPQGNSLFSAHTA-DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSD-------  348 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-------  348 (540)
                      +..++++|++++++.+... |+....|+++|+.+++.  .-..+..     .....++|.+ ++..|+....+       
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~--~~~~i~~-----~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE--LPDVLER-----VKFSCMAWTH-DGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE--EEEEEEE-----ECSCCEEECT-TSSEEEEEECCCCSSCCS
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCccee--ccccccc-----ccccceEEcC-CCCEEEEEEeccccCccc
Confidence            4567889999998877543 44556899999998721  1122221     1235789999 77776654332       


Q ss_pred             ---------CcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC---CCe--EEEEECCCCCee-----
Q 009203          349 ---------HAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA---DKR--IIGFDAGVGRAD-----  409 (540)
Q Consensus       349 ---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~--i~iwd~~~~~~~-----  409 (540)
                               ..|..+.+.+..... ............+..+..++++++++....   +..  +.+.|+......     
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~  277 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             ccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence                     257777777754210 111111122334667778899998775432   223  445555432110     


Q ss_pred             ---eeec-cCccEEEEeecCCCCCceEEEEE--cCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEE
Q 009203          410 ---FKHQ-IESKCMSVLPNPCDFNLFMVQTG--TPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYIT  483 (540)
Q Consensus       410 ---~~~~-~~~~~~~~~~~~~~~~~~~l~~~--~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  483 (540)
                         .... ......-+......   .++.+.  +.++.|...++........    ...+..+...+..-.++..+.+|+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~---~~~~Tn~~a~~~~L~~~~~~~~~~~~w----~~vi~~~~~~~~~~~~~~~~~~lv  350 (430)
T d1qfma1         278 KWVKLIDNFEGEYDYVTNEGTV---FTFKTNRHSPNYRLINIDFTDPEESKW----KVLVPEHEKDVLEWVACVRSNFLV  350 (430)
T ss_dssp             CCEEEECSSSSCEEEEEEETTE---EEEEECTTCTTCEEEEEETTBCCGGGC----EEEECCCSSCEEEEEEEETTTEEE
T ss_pred             ceeEeecccccceEEEecCCce---eecccCcccccceeEEecCCCCccccc----eEEecccCcceeeeEEEEECCEEE
Confidence               0111 11111111111111   223332  2245666667665432110    111223444454444444555666


Q ss_pred             EEe-CCC--cEEEEeccCCCCcccccccccccceeEEEEcCCCC
Q 009203          484 SGS-ADP--VIHLFDIRYSANKPSQSIRAHQKRVFKAVWHYSHP  524 (540)
Q Consensus       484 sg~-~dg--~i~iwd~~~~~~~~~~~~~~h~~~i~~l~~s~~~~  524 (540)
                      ... .++  .|++++...  +..........+.|..+...++..
T Consensus       351 l~~~~~~~~~l~v~~~~~--~~~~~~~~~~~~sv~~~~~~~~~~  392 (430)
T d1qfma1         351 LCYLHDVKNTLQLHDLAT--GALLKIFPLEVGSVVGYSGQKKDT  392 (430)
T ss_dssp             EEEEETTEEEEEEEETTT--CCEEEEECCCSSEEEEEECCTTCS
T ss_pred             EEEEcCCEeEEEEEECCC--CcEEEecCCCCceEeeccCCCCCC
Confidence            543 454  578888886  333322232334555555555544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.84  E-value=0.1  Score=50.42  Aligned_cols=168  Identities=11%  Similarity=0.050  Sum_probs=86.9

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeec--CCCCCeEEEEecCCCCCcee
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTA--DSGDSQISVLNLNKTKGRAC  315 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~--~~~d~~i~vwd~~~~~~~~~  315 (540)
                      .++.+..|+.+.-.|..+++............  .+  .++..-.--++ .++.+...  ....|.|.-+|..+++....
T Consensus       119 ~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~--~~--~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  193 (560)
T d1kv9a2         119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK--PY--SITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (560)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTTS--SC--BCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             eEEEEeCCCEEEEEECCCCcEEeccCccCccc--ce--eeeeeeeeecC-cccccccceeccccceEEEEECCCceEEee
Confidence            56777788888888888887766553321110  10  11111111123 34443110  12346799999999854443


Q ss_pred             EEeecCCCC------------------------cccce-eEEEEeCCCCCEEEEEec-------------------CCcE
Q 009203          316 VTFLDDKPH------------------------VKGII-NSIIFLPWENPCFATGGS-------------------DHAV  351 (540)
Q Consensus       316 ~~~~~~~~~------------------------~~~~v-~~~~~~p~~~~~l~s~~~-------------------dg~i  351 (540)
                      .........                        ..+.+ ..+++.+ ...+++.+..                   ...|
T Consensus       194 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~si  272 (560)
T d1kv9a2         194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI  272 (560)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCcccccccccccCCccccceee
Confidence            333321110                        01111 2356667 5555554321                   2356


Q ss_pred             EEEecCCCCCccccceeecccCC----cceeEEEeccCC---CEEEEEeCCCeEEEEECCCCCeeee
Q 009203          352 VLWSERDAEDSWKPKALHRNLHS----SAVMGVAGMQQK---QIVLSAGADKRIIGFDAGVGRADFK  411 (540)
Q Consensus       352 ~iwd~~~~~~~~~~~~~~~~~~~----~~v~~l~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~  411 (540)
                      .-.|+++++..|..+........    ....-+....++   ..++.++.+|.++++|..+|+.+..
T Consensus       273 vAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~  339 (560)
T d1kv9a2         273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA  339 (560)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccc
Confidence            77788888876555443221111    111112222234   3677788899999999999988643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.83  E-value=0.12  Score=44.25  Aligned_cols=198  Identities=13%  Similarity=0.096  Sum_probs=119.7

Q ss_pred             EEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecCCCCCeEEEEec
Q 009203          228 SLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTADSGDSQISVLNL  307 (540)
Q Consensus       228 ~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~  307 (540)
                      +.-.+| ..+.||.-+ ..++.|+|+++.+.+....-         ...|.--.|-.+ +.|+..     .+..|+-|++
T Consensus        67 sAIMhP-~~~IiALra-g~~LQiFnletK~klks~~~---------~e~VvfWkWis~-~~L~lV-----T~taVYHW~~  129 (327)
T d1utca2          67 SAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM---------TDDVTFWKWISL-NTVALV-----TDNAVYHWSM  129 (327)
T ss_dssp             EEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC---------SSCCCEEEESSS-SEEEEE-----CSSEEEEEES
T ss_pred             hhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEc---------CCCcEEEEecCC-CEEEEE-----cCCceEEEcc
Confidence            444678 478888776 45899999998776655532         245666677654 455554     4778999999


Q ss_pred             CCCCCceeEEeecCCCC-cccceeEEEEeCCCCCEEEEEe-------cCCcEEEEecCCCCCccccceeecccCCcceeE
Q 009203          308 NKTKGRACVTFLDDKPH-VKGIINSIIFLPWENPCFATGG-------SDHAVVLWSERDAEDSWKPKALHRNLHSSAVMG  379 (540)
Q Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  379 (540)
                      +...  .....++.++. ....|..-..++ +.++++..+       -.|.+.+|..+.+.    .+.+  ++|.+....
T Consensus       130 ~g~s--~P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~~----sQ~i--eGhaa~F~~  200 (327)
T d1utca2         130 EGES--QPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPI--EGHAASFAQ  200 (327)
T ss_dssp             SSSC--CCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTTE----EEEE--CCSEEEEEE
T ss_pred             cCCC--CchhhhhhcccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccCc----Cccc--cceeeeeEE
Confidence            6432  45555554331 124577778888 888876543       23678899998765    2444  456554444


Q ss_pred             EEeccC--C-CEEEEE---eCCCeEEEEECCCCC---eee-e------ec---cCccEEEEeecCCCCCceEEEEEcCCC
Q 009203          380 VAGMQQ--K-QIVLSA---GADKRIIGFDAGVGR---ADF-K------HQ---IESKCMSVLPNPCDFNLFMVQTGTPGR  440 (540)
Q Consensus       380 l~~s~~--~-~~l~~~---~~dg~i~iwd~~~~~---~~~-~------~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg  440 (540)
                      +.+.-+  . ..++.+   ...+.+++.++....   ..+ .      +.   ......++..++..   .++..-+.-|
T Consensus       201 ~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky---giiyviTK~G  277 (327)
T d1utca2         201 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH---DVVFLITKYG  277 (327)
T ss_dssp             ECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT---TEEEEEETTS
T ss_pred             EEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccC---CEEEEEecCc
Confidence            443211  1 223322   223678888886522   111 0      01   12334455555433   3666677889


Q ss_pred             eEEEEECCCCccee
Q 009203          441 QLRLYDIRLRQTEI  454 (540)
Q Consensus       441 ~v~i~d~~~~~~~~  454 (540)
                      .|++||+.++.+..
T Consensus       278 ~i~lyDleTgt~i~  291 (327)
T d1utca2         278 YIHLYDLETGTCIY  291 (327)
T ss_dssp             EEEEEETTTCCEEE
T ss_pred             EEEEEEcccccEEE
Confidence            99999999988654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.81  E-value=0.25  Score=47.75  Aligned_cols=207  Identities=10%  Similarity=-0.030  Sum_probs=103.7

Q ss_pred             EEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCc-eeEEEecCCCeEEEEeecCCCCCeEEEEecCCCCCceeE
Q 009203          238 LFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWP-EDIAWHPQGNSLFSAHTADSGDSQISVLNLNKTKGRACV  316 (540)
Q Consensus       238 ~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V-~~~~~~~~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~  316 (540)
                      .|.+++.++.|.-.|..+++.+.++..............+ ..+++.  +..++.+    +.++.+.-.|..+++.....
T Consensus        70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~----t~~~~l~alda~tG~~~W~~  143 (582)
T d1flga_          70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFG----TLDASVVALNKNTGKVVWKK  143 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEE----ETTTEEEEEESSSCCEEEEE
T ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEe----cCCCeEEEecccccceeeee
Confidence            4455566677777777777776655322111000100111 234443  3456666    78888888899988432111


Q ss_pred             EeecCCC-Cc-ccceeEEEEeCCCCCEEEEE-------ecCCcEEEEecCCCCCccccceeecc----------------
Q 009203          317 TFLDDKP-HV-KGIINSIIFLPWENPCFATG-------GSDHAVVLWSERDAEDSWKPKALHRN----------------  371 (540)
Q Consensus       317 ~~~~~~~-~~-~~~v~~~~~~p~~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~~~~~----------------  371 (540)
                       .+.... .. ......+.-.......++..       +..+.|.-+|..+++.+|+.......                
T Consensus       144 -~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~  222 (582)
T d1flga_         144 -KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK  222 (582)
T ss_dssp             -ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred             -cccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccc
Confidence             111100 00 00000111111122333332       23456888899888877654432110                


Q ss_pred             -------------------cCCcc-eeEEEeccCCCEEEEEeC------------------------CCeEEEEECCCCC
Q 009203          372 -------------------LHSSA-VMGVAGMQQKQIVLSAGA------------------------DKRIIGFDAGVGR  407 (540)
Q Consensus       372 -------------------~~~~~-v~~l~~s~~~~~l~~~~~------------------------dg~i~iwd~~~~~  407 (540)
                                         .-... -..+++.+...+++.+..                        ...+.-.|.++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~  302 (582)
T d1flga_         223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGE  302 (582)
T ss_dssp             CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCC
T ss_pred             cccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchh
Confidence                               00111 223567777777766541                        2357778888888


Q ss_pred             eeeeeccCc------------cEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcc
Q 009203          408 ADFKHQIES------------KCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQT  452 (540)
Q Consensus       408 ~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~  452 (540)
                      ....++...            ....+.. .++.....++....++.+.++|..+++.
T Consensus       303 ~~W~~q~~~~D~wd~d~~~~p~l~d~~~-~~g~~~~~v~~~~k~g~~~vldr~tG~~  358 (582)
T d1flga_         303 VKWFYQHTPNDAWDFSGNNELVLFDYKA-KDGKIVKATAHADRNGFFYVVDRSNGKL  358 (582)
T ss_dssp             EEEEEESSTTCCSCCCCCCCCEEEEEEC-SSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             hhhccccccccccccccccccccccccc-ccccccceeEeecccccEEeecccCCcc
Confidence            765543311            1111222 2222224677788899999999888764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.22  E-value=0.21  Score=39.96  Aligned_cols=225  Identities=16%  Similarity=0.126  Sum_probs=113.7

Q ss_pred             CCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCC--CeEEEE--eecCCCCCeEEEEecCCC
Q 009203          235 NEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQG--NSLFSA--HTADSGDSQISVLNLNKT  310 (540)
Q Consensus       235 ~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~--~~l~s~--~~~~~~d~~i~vwd~~~~  310 (540)
                      +..+|+++...|.+.++-+..++...--           ..+|.... .|..  .++..+  ...|-.-+.|.+-++...
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt-----------kePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~   92 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN-----------REPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRP   92 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC-----------SSCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe-----------cccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCC
Confidence            4668888888999999988876543211           12222111 1111  122222  111123334444444422


Q ss_pred             CCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceeeccc--------CCcceeEEEe
Q 009203          311 KGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNL--------HSSAVMGVAG  382 (540)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~v~~l~~  382 (540)
                        .+... +..  ...-.|.+++..  +.+..++|+......+|-++.++.    ..+....        ....|..+.+
T Consensus        93 --GEE~~-i~s--pk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGkl----rkL~~vPpFsFVtDI~~d~I~G~g~  161 (313)
T d2hu7a1          93 --GEEQR-LEA--VKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGL----RELARLPGFGFVSDIRGDLIAGLGF  161 (313)
T ss_dssp             --TCEEE-CTT--SCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEE----EEEEEESSCEEEEEEETTEEEEEEE
T ss_pred             --CeeeE-ecC--CceEEEEEeeec--CceEEEecccCCceEEEEEeCCce----eeeccCCCcceEEeccCCeEEEEee
Confidence              11121 221  111346666664  667788888888899999998873    3222211        2233444444


Q ss_pred             -ccCCCEEEEEeC-CCeEEEEECCCCCeeeeeccCccEEEEeecCCCCCceEEEEEcC---CCeEEEEECCCCcceeeee
Q 009203          383 -MQQKQIVLSAGA-DKRIIGFDAGVGRADFKHQIESKCMSVLPNPCDFNLFMVQTGTP---GRQLRLYDIRLRQTEIHAF  457 (540)
Q Consensus       383 -s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~v~i~d~~~~~~~~~~~  457 (540)
                       .++..-++++.. .|.+++++...|...          .....+.+    .++++-.   .....-+|++++......+
T Consensus       162 ~~g~~~sfF~adl~SG~lri~tpkeGS~~----------~ay~~~gn----KV~sdyEt~gEsywit~D~~s~~yerve~  227 (313)
T d2hu7a1         162 FGGGRVSLFTSNLSSGGLRVFDSGEGSFS----------SASISPGM----KVTAGLETAREARLVTVDPRDGSVEDLEL  227 (313)
T ss_dssp             EETTEEEEEEEETTTEEEEEECCSSEEEE----------EEEECTTS----CEEEEEEESSCEEEEEECTTTCCEEECCC
T ss_pred             ecCCcceEEEEecccCCEEEecCCCCccc----------ceeEccCc----eeeeccCCCCceEEEEEecccCceeeeec
Confidence             223333555555 777787777665542          22333322    1122211   1112234666554332222


Q ss_pred             ccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEec
Q 009203          458 GWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDI  496 (540)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~  496 (540)
                      ....-..-....|+-+-+.|++++++.+-.||.-.+|.-
T Consensus       228 P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         228 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  266 (313)
T ss_dssp             SSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CcccceeecceEEEeeeeCCCCcEEEEEecCCchheeec
Confidence            111000111234566679999999999999999999863

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.80  E-value=0.89  Score=43.65  Aligned_cols=80  Identities=15%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             CeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCCcEEEEeccCCCCccccccccccc-ceeEEE
Q 009203          440 RQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSADPVIHLFDIRYSANKPSQSIRAHQK-RVFKAV  518 (540)
Q Consensus       440 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~h~~-~i~~l~  518 (540)
                      |.|.-+|+.+++.......        ..++.+-.++..|.++++|+.||.++.||..+  ++.+-.+.-... .-.-+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~--------~~p~~~g~lstagglVF~Gt~dg~l~A~Da~T--Ge~LW~~~~~~~~~~~P~t  535 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKE--------HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKS--GKELWKFQTGSGIVSPPIT  535 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEE--------SSCCCSCCEEETTTEEEEECTTSEEEEEETTT--CCEEEEEECSSCCCSCCEE
T ss_pred             CeEEEEcCCCCcEEeecCC--------CCCCccceeEEcCCeEEEeCCCCeEEEEECCC--CcEeEEEECCCCccccCEE
Confidence            5677777777765443211        01111112234677888999999999999999  777766653221 111256


Q ss_pred             EcCCCC-EEEEE
Q 009203          519 WHYSHP-LLISI  529 (540)
Q Consensus       519 ~s~~~~-~l~s~  529 (540)
                      |..+|+ |++..
T Consensus       536 y~~~G~qYv~i~  547 (582)
T d1flga_         536 WEQDGEQYLGVT  547 (582)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEECCEEEEEEE
Confidence            667885 55543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.47  E-value=0.77  Score=40.58  Aligned_cols=204  Identities=9%  Similarity=0.116  Sum_probs=111.9

Q ss_pred             CCCeEEEEeecCCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeC-----CCCCEEEEEec--C--CcEEEEe
Q 009203          285 QGNSLFSAHTADSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLP-----WENPCFATGGS--D--HAVVLWS  355 (540)
Q Consensus       285 ~~~~l~s~~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-----~~~~~l~s~~~--d--g~i~iwd  355 (540)
                      +..+++..    ...+-|.+||+. |   +.+..+..     +.++.|..-.     ....-|+.++.  +  .+|.+|.
T Consensus        39 ~~SlI~gT----dK~~Gl~vYdL~-G---~~l~~~~~-----Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          39 QNSKLITT----NKKSGLAVYSLE-G---KMLHSYHT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             GGCEEEEE----ETTSCCEEEETT-C---CEEEECCS-----SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred             CccEEEEE----cCcCCEEEEcCC-C---cEEEeccc-----CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence            44466655    566679999997 4   44555542     4566665431     02223455552  2  3577887


Q ss_pred             cCCCCCccccceeecc-----cCCcceeEEEe--ccC-CC-EEEEEeCCCeEEEEECC---CCC----eeeeeccCccEE
Q 009203          356 ERDAEDSWKPKALHRN-----LHSSAVMGVAG--MQQ-KQ-IVLSAGADKRIIGFDAG---VGR----ADFKHQIESKCM  419 (540)
Q Consensus       356 ~~~~~~~~~~~~~~~~-----~~~~~v~~l~~--s~~-~~-~l~~~~~dg~i~iwd~~---~~~----~~~~~~~~~~~~  419 (540)
                      +......  ...+...     .-...++.+|+  ++. |. ++++...+|.+..|.+.   .+.    .+..+......-
T Consensus       106 id~~~~~--l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~E  183 (353)
T d1h6la_         106 IDGKNGT--LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTE  183 (353)
T ss_dssp             EETTTTE--EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEE
T ss_pred             ecCcccc--cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccc
Confidence            7532210  1111100     01234677777  554 44 45667778988888663   332    244566677788


Q ss_pred             EEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEc--CC--CCEEEEEeCCCcEEEEe
Q 009203          420 SVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWS--PD--GLYITSGSADPVIHLFD  495 (540)
Q Consensus       420 ~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~--g~~l~sg~~dg~i~iwd  495 (540)
                      .+.++...   ..|+.+-.+..|..++..........+-...........+-.|+.-  .+  |-+|++.-.+++..|||
T Consensus       184 GCVvDde~---~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         184 GMAADDEY---GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             EEEEETTT---TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             eEEEeCCC---CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            88888766   5788888888787777653221111100000111234567777653  23  33455555688999999


Q ss_pred             ccCCCCcccccc
Q 009203          496 IRYSANKPSQSI  507 (540)
Q Consensus       496 ~~~~~~~~~~~~  507 (540)
                      .... ...+..|
T Consensus       261 r~~~-~~~~g~F  271 (353)
T d1h6la_         261 RQGQ-NKYVADF  271 (353)
T ss_dssp             SSTT-CCEEEEE
T ss_pred             cCCC-ccccceE
Confidence            9863 3444443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.36  E-value=0.83  Score=40.33  Aligned_cols=201  Identities=12%  Similarity=0.024  Sum_probs=104.8

Q ss_pred             ceeEEEecCCCeEEEEee-c-------CCCCCeEEEEecCCCCCceeEEeec-CCC-CcccceeEEEE--eCCCCC-EEE
Q 009203          277 PEDIAWHPQGNSLFSAHT-A-------DSGDSQISVLNLNKTKGRACVTFLD-DKP-HVKGIINSIIF--LPWENP-CFA  343 (540)
Q Consensus       277 V~~~~~~~~~~~l~s~~~-~-------~~~d~~i~vwd~~~~~~~~~~~~~~-~~~-~~~~~v~~~~~--~p~~~~-~l~  343 (540)
                      .-+++..|+|..++++.. .       ....|.|.++|+.+.......-.+. ..+ ...-....+.+  .+ ++. +|+
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~-dg~~~L~  115 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD-DNTVYLL  115 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECT-TCCEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcC-CCcEEEE
Confidence            346788888877766510 0       0124899999998654322222222 111 01112345544  33 444 333


Q ss_pred             EE---ecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeC---------------CCeEEEEECCC
Q 009203          344 TG---GSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGA---------------DKRIIGFDAGV  405 (540)
Q Consensus       344 s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---------------dg~i~iwd~~~  405 (540)
                      +.   ....+|.+|++.....................+++++..+|.++++-..               -+.-.+|....
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            33   2456788888865432111111111123345789999888888887321               01233333333


Q ss_pred             CCeeeeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC-CCEEEE
Q 009203          406 GRADFKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD-GLYITS  484 (540)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~s  484 (540)
                      +........-.....++++|++.  .++++-+..+.|++|++.......... .    ..-.+.+-.+.++++ |.+.+.
T Consensus       196 ~~~~~~~~~l~~pNGI~~s~d~~--~lyVa~t~~~~i~~y~~~~~~~l~~~~-~----~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         196 NDVRVVAEGFDFANGINISPDGK--YVYIAELLAHKIHVYEKHANWTLTPLR-V----LSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SCEEEEEEEESSEEEEEECTTSS--EEEEEEGGGTEEEEEEECTTSCEEEEE-E----EECSSEEEEEEECTTTCCEEEE
T ss_pred             CceEEEcCCCCccceeEECCCCC--EEEEEeCCCCeEEEEEeCCCcccceEE-E----ecCCCCCCccEEecCCCEEEEE
Confidence            33333333345677888998863  456677788999999997544222111 0    112345667888764 444444


Q ss_pred             E
Q 009203          485 G  485 (540)
Q Consensus       485 g  485 (540)
                      +
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.97  Score=40.37  Aligned_cols=185  Identities=8%  Similarity=-0.014  Sum_probs=102.5

Q ss_pred             cceeEEEEeCCCCCEEEEEecCCcEEEEecCCC-------CCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEE
Q 009203          327 GIINSIIFLPWENPCFATGGSDHAVVLWSERDA-------EDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRII  399 (540)
Q Consensus       327 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~  399 (540)
                      ....-+++++ ...+++.|+.++ +.|..+..-       .........   ..-..|..++|+-  ..++.. .++.+.
T Consensus        37 ~~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~---~~ip~v~~vafs~--d~l~v~-~~~~l~  108 (381)
T d1xipa_          37 ASLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE---KEIPDVIFVCFHG--DQVLVS-TRNALY  108 (381)
T ss_dssp             SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE---EECTTEEEEEEET--TEEEEE-ESSEEE
T ss_pred             cccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceec---cCCCCeEEEEeeC--CEEEEE-eCCCEE
Confidence            3467788888 666788888765 666653210       000001111   1123588899974  445544 445688


Q ss_pred             EEECCCCCee-eeeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccccccCccccCeEEEEEcCC
Q 009203          400 GFDAGVGRAD-FKHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPD  478 (540)
Q Consensus       400 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  478 (540)
                      .++...-... ..........++.++|.     .++....++.+.++++..........+.. . -.-.+.+.+++|++.
T Consensus       109 ~~~~~~l~~~~~~~~~~~~~~~~~~~p~-----~~~l~~~~~~~~~~~l~~~~~~~~~~~v~-~-~~~~~~~~~v~ws~k  181 (381)
T d1xipa_         109 SLDLEELSEFRTVTSFEKPVFQLKNVNN-----TLVILNSVNDLSALDLRTKSTKQLAQNVT-S-FDVTNSQLAVLLKDR  181 (381)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS-----EEEEEETTSEEEEEETTTCCEEEEEESEE-E-EEECSSEEEEEETTS
T ss_pred             EEEeeccccccccccccccccceecCCc-----eeEEEecCCCEEEEEeccCccccccCCcc-e-EEecCCceEEEEeCC
Confidence            8887764433 33445567888888885     46666778999999998775322111100 0 011245778888888


Q ss_pred             CCEEEEEeCCCcEEEE-eccCCCCcccccccccccceeEEEEcCCCCEEEEE
Q 009203          479 GLYITSGSADPVIHLF-DIRYSANKPSQSIRAHQKRVFKAVWHYSHPLLISI  529 (540)
Q Consensus       479 g~~l~sg~~dg~i~iw-d~~~~~~~~~~~~~~h~~~i~~l~~s~~~~~l~s~  529 (540)
                      |..++++..++ ..+- ++..  ...+.........|.+|.|-.+..++++-
T Consensus       182 gkq~v~~~g~~-~q~k~~i~~--~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         182 SFQSFAWRNGE-MEKQFEFSL--PSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             CEEEEEEETTE-EEEEEEECC--CHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cEEEEEeCCCc-eeeccCCCC--ccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            88777774332 2111 2221  11111111223457888887766666554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.13  E-value=0.99  Score=39.84  Aligned_cols=205  Identities=9%  Similarity=0.105  Sum_probs=112.4

Q ss_pred             CcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEec----CCC--eEEEEeecCCCCCeEEEEecCC
Q 009203          236 EQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHP----QGN--SLFSAHTADSGDSQISVLNLNK  309 (540)
Q Consensus       236 ~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~----~~~--~l~s~~~~~~~d~~i~vwd~~~  309 (540)
                      ..+++....++-+.+||+. ++.+..+.          .+.++.+..-.    .++  -|++++.......+|.+|.+..
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~----------~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~  108 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYH----------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECC----------SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEET
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecc----------cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecC
Confidence            5677777777779999986 54433331          13344444321    222  3444422111234688888763


Q ss_pred             CCCceeEEeecCCCC----cccceeEEEE--eCCCCC-EEEEEecCCcEEEEecCCCCC-ccccceeecccCCcceeEEE
Q 009203          310 TKGRACVTFLDDKPH----VKGIINSIIF--LPWENP-CFATGGSDHAVVLWSERDAED-SWKPKALHRNLHSSAVMGVA  381 (540)
Q Consensus       310 ~~~~~~~~~~~~~~~----~~~~v~~~~~--~p~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~l~  381 (540)
                      ..  ..+..+.....    ....+..+|+  ++.++. +++....+|.+..|.+..... ......+....-...+..+.
T Consensus       109 ~~--~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCV  186 (353)
T d1h6la_         109 KN--GTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMA  186 (353)
T ss_dssp             TT--TEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEE
T ss_pred             cc--cccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEE
Confidence            31  22333322110    1123667776  664565 456667789998887743211 01111222223456788999


Q ss_pred             eccCCCEEEEEeCCCeEEEEECCCC-----Ceeeee---ccCcc--EEEEeecCCCCCceEEEEEcCCCeEEEEECCCCc
Q 009203          382 GMQQKQIVLSAGADKRIIGFDAGVG-----RADFKH---QIESK--CMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQ  451 (540)
Q Consensus       382 ~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~---~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~  451 (540)
                      +.+....|+.+-.+.-+..++..-.     ..+...   .....  -+++....+ ..+.+|++.-.+++..+||.....
T Consensus       187 vDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~-~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         187 ADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAAD-GKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             EETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGG-GCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             EeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCC-CCeEEEEEcCCCCeEEEEecCCCc
Confidence            9998899999988877777766421     111111   11223  334443333 244778888888999999998754


Q ss_pred             cee
Q 009203          452 TEI  454 (540)
Q Consensus       452 ~~~  454 (540)
                      ..+
T Consensus       266 ~~~  268 (353)
T d1h6la_         266 KYV  268 (353)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            333

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.12  E-value=0.99  Score=41.67  Aligned_cols=112  Identities=13%  Similarity=0.033  Sum_probs=63.6

Q ss_pred             CcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeee---------ccCccEEEEeecCCCCCceEEEEE-c------
Q 009203          374 SSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKH---------QIESKCMSVLPNPCDFNLFMVQTG-T------  437 (540)
Q Consensus       374 ~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~-~------  437 (540)
                      -...++|+|.|+|+++++--..|.|++++..++......         ..+...+.++++|+-....++... +      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            356789999999998887656799999998877653221         224567889999863332333332 1      


Q ss_pred             CC----C--eEEEEECCCCcceee----eeccccccCccccCeEEEEEcCCCCEEEEEeC
Q 009203          438 PG----R--QLRLYDIRLRQTEIH----AFGWKQESSESQSALINQSWSPDGLYITSGSA  487 (540)
Q Consensus       438 ~d----g--~v~i~d~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~  487 (540)
                      .+    +  .+..+..........    .+........|  ....|.|.|||.++++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDH--QSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSC--CEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccc--cccceeEcCCCCEEEEecC
Confidence            01    1  133333332221110    11000111223  4578999999987776553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.01  E-value=1.3  Score=40.57  Aligned_cols=264  Identities=11%  Similarity=0.048  Sum_probs=130.6

Q ss_pred             EEeccchhcccccCceEEEEEecCCCcEEEEE-eCC----ceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecC
Q 009203          211 HCHTSNHVSSLHKRKLRSLSLNPVNEQLFVTS-ALD----GVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQ  285 (540)
Q Consensus       211 ~~~~~~~~~~~h~~~V~~l~~spd~~~~l~tg-~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~  285 (540)
                      .+.|....-.++.-.+..+++||| ++++|.+ +..    ..+++.|+.+++.+.......         ....++|.+|
T Consensus       112 vllD~n~la~~~~~~~~~~~~Spd-~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~---------~~~~~~W~~D  181 (430)
T d1qfma1         112 VFLDPNILSDDGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV---------KFSCMAWTHD  181 (430)
T ss_dssp             EEECGGGGCSSSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE---------CSCCEEECTT
T ss_pred             eecchhhhcccccceecceEecCC-CCEEEEEeccccCchheeEEeccCcceecccccccc---------cccceEEcCC
Confidence            345655555566655677889997 6666643 333    469999999987543222111         1246899999


Q ss_pred             CCeEEEEeec------------CCCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEec---CCc
Q 009203          286 GNSLFSAHTA------------DSGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS---DHA  350 (540)
Q Consensus       286 ~~~l~s~~~~------------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~---dg~  350 (540)
                      ++.|+.....            ......|..|.+.+..... ...+... .....+..+..++ ++.+++....   +..
T Consensus       182 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~-d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~  258 (430)
T d1qfma1         182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFP-DEPKWMGGAELSD-DGRYVLLSIREGCDPV  258 (430)
T ss_dssp             SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCT-TCTTCEEEEEECT-TSCEEEEEEECSSSSC
T ss_pred             CCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccc-cCCceEEeeeccC-CcceeeEEeeccCCcc
Confidence            9987754110            0122368888888764322 2333321 1223466677788 8888764432   233


Q ss_pred             --EEEEecCCCCCcc----ccceeecccCCcceeEEEeccCCCEEEEEe---CCCeEEEEECCCCCee---eee-ccCcc
Q 009203          351 --VVLWSERDAEDSW----KPKALHRNLHSSAVMGVAGMQQKQIVLSAG---ADKRIIGFDAGVGRAD---FKH-QIESK  417 (540)
Q Consensus       351 --i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~---~~~-~~~~~  417 (540)
                        +.+.|+.......    ....+. ........-+. +.++.+++...   .++.|...++......   ... .....
T Consensus       259 ~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~  336 (430)
T d1qfma1         259 NRLWYCDLQQESNGITGILKWVKLI-DNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD  336 (430)
T ss_dssp             CEEEEEEGGGSSSSSCSSCCCEEEE-CSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSC
T ss_pred             EEEEEeeCCCcccccccccceeEee-cccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcc
Confidence              4444544322100    001111 11122222222 22233333332   2466777777654321   111 12222


Q ss_pred             EEEEeecC-CCCCceEEEEEcCCC--eEEEEECCCCcceeeeeccccccCccccCeEEEEEcCCCCEEEEEeC----CCc
Q 009203          418 CMSVLPNP-CDFNLFMVQTGTPGR--QLRLYDIRLRQTEIHAFGWKQESSESQSALINQSWSPDGLYITSGSA----DPV  490 (540)
Q Consensus       418 ~~~~~~~~-~~~~~~~l~~~~~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~----dg~  490 (540)
                      +....+.. .+   .+++....++  .|+++++.++.......       .-.+.|..+...++...+...-.    -.+
T Consensus       337 ~~~~~~~~~~~---~lvl~~~~~~~~~l~v~~~~~~~~~~~~~-------~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~  406 (430)
T d1qfma1         337 VLEWVACVRSN---FLVLCYLHDVKNTLQLHDLATGALLKIFP-------LEVGSVVGYSGQKKDTEIFYQFTSFLSPGI  406 (430)
T ss_dssp             EEEEEEEETTT---EEEEEEEETTEEEEEEEETTTCCEEEEEC-------CCSSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred             eeeeEEEEECC---EEEEEEEcCCEeEEEEEECCCCcEEEecC-------CCCceEeeccCCCCCCEEEEEEcCCCCCCe
Confidence            32222221 22   3444444554  58889988765422211       11234555555555554433222    367


Q ss_pred             EEEEeccCC
Q 009203          491 IHLFDIRYS  499 (540)
Q Consensus       491 i~iwd~~~~  499 (540)
                      ++-||+.++
T Consensus       407 ~y~~Dl~t~  415 (430)
T d1qfma1         407 IYHCDLTKE  415 (430)
T ss_dssp             EEEEETTSS
T ss_pred             EEEEECCCC
Confidence            888888874

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.36  E-value=0.64  Score=44.65  Aligned_cols=62  Identities=16%  Similarity=0.352  Sum_probs=40.3

Q ss_pred             cEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEECCCCCeeeeeccCcc
Q 009203          350 AVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFDAGVGRADFKHQIESK  417 (540)
Q Consensus       350 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  417 (540)
                      .|.-||+.+++.+|+....      .+..+=..+-.|.++++|+.||.++.||.++|+.+..+.....
T Consensus       458 ~l~AiD~~tGk~~W~~~~~------~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~  519 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHV------SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (573)
T ss_dssp             EEEEEETTTTEEEEEEEES------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cEEEeCCCCCceEeeecCC------CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCC
Confidence            4556666666655543321      1111111223578888999999999999999999988766543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=2.6  Score=35.56  Aligned_cols=104  Identities=13%  Similarity=0.085  Sum_probs=49.0

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCCeeeeecc--CccEEEEeecCCCCCceEEEEEcCC-----CeEEEEECCCCcc
Q 009203          385 QKQIVLSAGAD-----KRIIGFDAGVGRADFKHQI--ESKCMSVLPNPCDFNLFMVQTGTPG-----RQLRLYDIRLRQT  452 (540)
Q Consensus       385 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d-----g~v~i~d~~~~~~  452 (540)
                      ++..++.|+.+     ..+..||..+.+.......  .....+......    .+++.|+.+     ..+..||..+..-
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~i~GG~~~~~~~~~~~~~~~~~~~~  223 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHN----CIYAAGGYDGQDQLNSVERYDVETETW  223 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT----EEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccceee----eEEEecCccccccccceeeeeecceee
Confidence            34555555543     3578888876554322111  111112222221    355554433     3467777766542


Q ss_pred             eeeeeccccccCccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEeccCC
Q 009203          453 EIHAFGWKQESSESQSALINQSWSPDGLYITSGSADP-----VIHLFDIRYS  499 (540)
Q Consensus       453 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~dg-----~i~iwd~~~~  499 (540)
                      ....     ....-......+.+  ++++++.|+.++     .|.+||+.+.
T Consensus       224 ~~~~-----~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         224 TFVA-----PMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             EECC-----CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             eccc-----CccCcccceEEEEE--CCEEEEEecCCCCeecceEEEEECCCC
Confidence            2211     01111111222233  678888887654     3788988864

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.83  E-value=3.8  Score=35.85  Aligned_cols=172  Identities=12%  Similarity=0.082  Sum_probs=90.3

Q ss_pred             CceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEE--ecCCC-eEEEEeecCCCCCeEEEEecCCCCC-ceeEEeec
Q 009203          245 DGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAW--HPQGN-SLFSAHTADSGDSQISVLNLNKTKG-RACVTFLD  320 (540)
Q Consensus       245 dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~--~~~~~-~l~s~~~~~~~d~~i~vwd~~~~~~-~~~~~~~~  320 (540)
                      .|.|.++|+.+...................-....+..  .++|. +|++.. -.....+|-+|++..... ...+..+.
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn-H~~~~~~ieif~~~~~~~~l~~~~~v~  145 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN-HPGSSSTVEVFKFQEEEKSLLHLKTIR  145 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE-CSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe-ccCCCceeEEEEEeCCCCeEEEEeecC
Confidence            48899999876543221111110000000111234444  34565 444441 113467889998865432 11222232


Q ss_pred             CCCCcccceeEEEEeCCCCCEEEEEec---------------CCcEEEEecCCCCCccccceeecccCCcceeEEEeccC
Q 009203          321 DKPHVKGIINSIIFLPWENPCFATGGS---------------DHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQ  385 (540)
Q Consensus       321 ~~~~~~~~v~~~~~~p~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~  385 (540)
                      .  ......+.+++.. ++.+++|-..               -+...+|....+..    ..+..  .-...+.|+++||
T Consensus       146 ~--~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~----~~~~~--~l~~pNGI~~s~d  216 (340)
T d1v04a_         146 H--KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV----RVVAE--GFDFANGINISPD  216 (340)
T ss_dssp             C--TTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE----EEEEE--EESSEEEEEECTT
T ss_pred             C--ccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce----EEEcC--CCCccceeEECCC
Confidence            2  1224478898888 7877777321               12334444444432    22211  3356889999999


Q ss_pred             CCEEEEE-eCCCeEEEEECCCCCee---eeeccCccEEEEeecCC
Q 009203          386 KQIVLSA-GADKRIIGFDAGVGRAD---FKHQIESKCMSVLPNPC  426 (540)
Q Consensus       386 ~~~l~~~-~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~  426 (540)
                      +++|+++ +..+.|++|++.....+   .........-.+.+++.
T Consensus       217 ~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~  261 (340)
T d1v04a_         217 GKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPV  261 (340)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTT
T ss_pred             CCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecC
Confidence            9877665 45778999998754332   22334555666666653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.21  E-value=6.6  Score=35.79  Aligned_cols=119  Identities=18%  Similarity=0.232  Sum_probs=63.5

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccC-CCCCCCCceeEEEecC---CCeEEEEeecC---
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCL-SPKHRRWPEDIAWHPQ---GNSLFSAHTAD---  296 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~~~~---~~~l~s~~~~~---  296 (540)
                      ..-++|+|.|| +++|++--..|.|++++..++... .+....... ...-......|+|+|+   ..+|..+++..   
T Consensus        27 ~~P~~la~~pd-g~llVter~~G~i~~v~~~~g~~~-~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          27 NKPHALLWGPD-NQIWLTERATGKILRVNPESGSVK-TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEeCC-CeEEEEEecCCEEEEEECCCCcEe-ecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            46789999996 888887655799999987765532 221111111 0122356788999985   33554432210   


Q ss_pred             CC----CCe--EEEEecCCCCCc-----eeEEeecCCCCcccceeEEEEeCCCCCEEEEEec
Q 009203          297 SG----DSQ--ISVLNLNKTKGR-----ACVTFLDDKPHVKGIINSIIFLPWENPCFATGGS  347 (540)
Q Consensus       297 ~~----d~~--i~vwd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~  347 (540)
                      +.    ...  +..+........     ..+..+.....|.  ...|.|.| ++.++++.+.
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgp-DG~LYvs~Gd  163 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGP-DQKIYYTIGD  163 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECT-TSCEEEEECC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcC-CCCEEEEecC
Confidence            01    112  333333322110     1112222222232  46899999 8888777664

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.14  E-value=5.8  Score=35.07  Aligned_cols=144  Identities=12%  Similarity=0.047  Sum_probs=84.8

Q ss_pred             CceEEEEEecCCCcEEEEEeCCceEEEEEcCCC-------CCcceeecccccCCCCCCCCceeEEEecCCCeEEEEeecC
Q 009203          224 RKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSR-------GSGASLLSTTDCLSPKHRRWPEDIAWHPQGNSLFSAHTAD  296 (540)
Q Consensus       224 ~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~-------~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s~~~~~  296 (540)
                      ....-++.++. ..+++.|+.++ ++|-.+..-       .....+....      .-..|..++|+.+  .|+..    
T Consensus        37 ~~~~LLAVsn~-~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~------~ip~v~~vafs~d--~l~v~----  102 (381)
T d1xipa_          37 ASLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK------EIPDVIFVCFHGD--QVLVS----  102 (381)
T ss_dssp             SCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE------ECTTEEEEEEETT--EEEEE----
T ss_pred             cccceEEEeCC-CCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc------CCCCeEEEEeeCC--EEEEE----
Confidence            35678888884 56777777775 666653211       0000111000      0124788999754  45554    


Q ss_pred             CCCCeEEEEecCCCCCceeEEeecCCCCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCccccceee----ccc
Q 009203          297 SGDSQISVLNLNKTKGRACVTFLDDKPHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKALH----RNL  372 (540)
Q Consensus       297 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~  372 (540)
                       .++.+..++..+-........+      ..++..+.++|   ..++....++.+.++++..+..    ..+.    ...
T Consensus       103 -~~~~l~~~~~~~l~~~~~~~~~------~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~----~~~~~~v~~~~  168 (381)
T d1xipa_         103 -TRNALYSLDLEELSEFRTVTSF------EKPVFQLKNVN---NTLVILNSVNDLSALDLRTKST----KQLAQNVTSFD  168 (381)
T ss_dssp             -ESSEEEEEESSSTTCEEEEEEC------SSCEEEEEECS---SEEEEEETTSEEEEEETTTCCE----EEEEESEEEEE
T ss_pred             -eCCCEEEEEeeccccccccccc------cccccceecCC---ceeEEEecCCCEEEEEeccCcc----ccccCCcceEE
Confidence             4566888887764332222222      24578888876   4567777789999999988753    1111    111


Q ss_pred             CCcceeEEEeccCCCEEEEEeCC
Q 009203          373 HSSAVMGVAGMQQKQIVLSAGAD  395 (540)
Q Consensus       373 ~~~~v~~l~~s~~~~~l~~~~~d  395 (540)
                      -.+.+.+++|++.|..++++..+
T Consensus       169 ~~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         169 VTNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             ECSSEEEEEETTSCEEEEEEETT
T ss_pred             ecCCceEEEEeCCcEEEEEeCCC
Confidence            23567888888888777776443

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.94  E-value=5.5  Score=34.43  Aligned_cols=194  Identities=7%  Similarity=-0.041  Sum_probs=105.6

Q ss_pred             CCCEEEEEecCCcEEEEecCCCCCccccceeecccCCcceeEEEeccCCCEEEEEeCCCeEEEEE---CCC------CCe
Q 009203          338 ENPCFATGGSDHAVVLWSERDAEDSWKPKALHRNLHSSAVMGVAGMQQKQIVLSAGADKRIIGFD---AGV------GRA  408 (540)
Q Consensus       338 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~iwd---~~~------~~~  408 (540)
                      +...+++-+.+|.|+--++..-.... ..... ..-.+.+..+........|+.-+..|.++...   +..      |.+
T Consensus         4 ~E~v~v~lS~~GyiKR~~~~~~~~~~-~~~~~-~k~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p   81 (323)
T d1wp5a_           4 SEDVIVTVTKDGYVKRTSLRSYAASN-GQDFA-MKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             CCEEEEEEETTCEEEEEEHHHHHHTT-TCCCC-CCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             CCCEEEEEeCCCeEEEeeHHHhhhcC-CCCCc-ccCCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence            56678888999998865543211000 00011 11234555555444556666667778766554   332      222


Q ss_pred             ee---eeccCccEEEEeecCCCCCceEEEEEcCCCeEEEEECCCCcceeeeeccc-cccCccccCeEEEEEcCCCCEEEE
Q 009203          409 DF---KHQIESKCMSVLPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTEIHAFGWK-QESSESQSALINQSWSPDGLYITS  484 (540)
Q Consensus       409 ~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~s  484 (540)
                      +.   .......+..+....+.....+|+..+..|.++..++.........-+.. ..+ .-...+..+.+..+...++.
T Consensus        82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L-~~~D~l~~v~~~~~~~~i~l  160 (323)
T d1wp5a_          82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINL-KNDDQVVDVHLTDGMNELFL  160 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCC-CTTCCEEEEEEECSCSEEEE
T ss_pred             ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccc-cccccccceeccCCCeEEEE
Confidence            22   12233444444433322222578888999999999886432111100000 012 22345667777767778888


Q ss_pred             EeCCCcEEEEeccCCCCccc---------ccccccccceeE-EEEcCCCCEEEEEEcCCcEEE
Q 009203          485 GSADPVIHLFDIRYSANKPS---------QSIRAHQKRVFK-AVWHYSHPLLISISSDLNIGL  537 (540)
Q Consensus       485 g~~dg~i~iwd~~~~~~~~~---------~~~~~h~~~i~~-l~~s~~~~~l~s~~~dg~v~i  537 (540)
                      ++..|.+..|+...  -.+.         ..+. ..+.|.+ ....+++..|+..+..|..+.
T Consensus       161 ~t~~G~~lrf~~~~--vr~~gr~a~GV~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gKr  220 (323)
T d1wp5a_         161 VTHNGYALWFDESE--VSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKK  220 (323)
T ss_dssp             EETTSEEEEEEGGG--SCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEE
T ss_pred             EEecceeeEeeccc--ccccCcccccccccccc-cccccchhhhccccccceeeeeeeheeec
Confidence            99999999998875  1111         1222 1234444 445566678888888887764

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=86.87  E-value=10  Score=33.92  Aligned_cols=167  Identities=11%  Similarity=0.035  Sum_probs=80.3

Q ss_pred             cccCceEEEEEecCCCcEEEEEeCCceEEEEEcCCCCCcceeecccccCCCCCCCCceeEEEecCCC-eEEEEeecCCCC
Q 009203          221 LHKRKLRSLSLNPVNEQLFVTSALDGVIRLWQLQSRGSGASLLSTTDCLSPKHRRWPEDIAWHPQGN-SLFSAHTADSGD  299 (540)
Q Consensus       221 ~h~~~V~~l~~spd~~~~l~tg~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~s~~~~~~~d  299 (540)
                      +-.+.|.+|+++|.+..++..|+..|-|  |....+....+...........+...+.+|+++|... .|..+.......
T Consensus         9 ~~gg~~~~i~~~P~~~~~~ya~~~~gGv--~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~   86 (427)
T d2ebsa1           9 GGGGYITGIVAHPKTKDLLYARTDIGGA--YRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD   86 (427)
T ss_dssp             CBCSCEEEEEECSSSTTCEEEEESSSCE--EEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEecCCCE--EEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCC
Confidence            4457899999999878888888776654  4443443322221111000011234578899998653 444441100011


Q ss_pred             CeEEEEecC-CCCCceeEEeecCC---CCcccceeEEEEeCCCCCEEEEEecCCcEEEEecCCCCCcccccee--ecccC
Q 009203          300 SQISVLNLN-KTKGRACVTFLDDK---PHVKGIINSIIFLPWENPCFATGGSDHAVVLWSERDAEDSWKPKAL--HRNLH  373 (540)
Q Consensus       300 ~~i~vwd~~-~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~  373 (540)
                      ....||--. .++.-..+......   ......+..+.++|.+...+..++.++.|.. ....++ .|.....  .....
T Consensus        87 ~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~-tW~~~~~~~~~~~~  164 (427)
T d2ebsa1          87 EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAK-TWTNVTSIPDAFTN  164 (427)
T ss_dssp             SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTS-SCEECTTSSCCCCS
T ss_pred             cCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCc-eeeecccCcccccC
Confidence            123345333 23111111111000   0011235678999977788877776655432 333333 2221110  01112


Q ss_pred             CcceeEEEeccCC-CEEEE
Q 009203          374 SSAVMGVAGMQQK-QIVLS  391 (540)
Q Consensus       374 ~~~v~~l~~s~~~-~~l~~  391 (540)
                      ...+..+.++|.. ..|+.
T Consensus       165 ~~~~~~i~~~p~~~~~~y~  183 (427)
T d2ebsa1         165 GIGYTSVIFDPERNGTIYA  183 (427)
T ss_dssp             SSCEEEEEECTTSTTCEEE
T ss_pred             CccceEEEecccccceeee
Confidence            3457788888743 33433