Citrus Sinensis ID: 009215

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
METMNGWLRLPMHESFNHDLAIRRFCPARVEQEQREWEETMNELELLSPYHEDAITSTSQDLAASEVDEFVDSFINMDHEDKDDDREINKSPALADHEAETFSMVNDGYGDQVSMMIEGNDHHLETMSIDFSGEDHDHHFTVVPEMVPSVEEVSHGVDQGLHLVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNINANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKSLSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLASAWQVNNASSS
cccccccccccccccccccHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHcccccEEEEEEccEEEEEEcccEEEEEEEccccccccc
cHHHHHHHccccccccccccHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccEHccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEHHHHHcccccccHHHcccccccEEEEEHHHHHHccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEcccHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEcccccEEEEEEcccccccccc
metmngwlrlpmhesfnhdlAIRRFCPARVEQEQREWEETMNElellspyhedaitstsqdlaaSEVDEFVDSFInmdhedkdddreinkspaladheAETFsmvndgygdqvsmmiegndhhletmsidfsgedhdhhftvvpemvpsveevshgvDQGLHLVHLLLACAEAVGCRDTKLAVSMLSQIWAsatpwgdslqRVSYCFALGLKSRLSLLQNINangtftggamdvplitREEKMEAFQLVYQttpyisfgFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSlasrpegpprirITCLISNQNLSELkasmkpvlhdatslginlefsmisepvtpslltrenldlreGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEqdanhngpffLGRFLESLHYYSAIFDSleaslprnsplrmnIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKSLSQARMMLSVYGCDGYTLACEKGClllgwkgrpIMLASAWQVNNASSS
metmngwlrlpmHESFNHDLAIRRFCPARVEQEQREWEETMNELELLSPYHEDAITSTSQDLAASEVDEFVDSFINMdhedkdddrEINKSpaladheaetFSMVNDGYGDQVSMMIEGNDHHLETMSIDFSGEDHDHHFTVVPEMVPSVEEVSHGVDQGLHLVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNINANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLAsrpegpprIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKSLSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLASAWqvnnasss
METMNGWLRLPMHESFNHDLAIRRFCPARVEQEQREWEETMNELELLSPYHEDAITSTSQDLAASEVDEFVDSFINMDHEDKDDDREINKSPALADHEAETFSMVNDGYGDQVSMMIEGNDHHLETMSIDFSGEDHDHHFTvvpemvpsveevsHGVDQGLHLVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNINANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKSLSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLASAWQVNNASSS
******WLRLPMHESFNHDLAIRRFCPARV*************************************************************************************MI*****HLETMSIDFSGEDHDHHFTVVPEMVPSVEEVSHGVDQGLHLVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNINANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLA******PRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKSLSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLASAWQV******
****NGW*RLPMHESFNHDLA**********************************************************************************************************************************************VHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNI*************PLITREEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLAS***GPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKSLSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLASAW*VNN****
METMNGWLRLPMHESFNHDLAIRRFCPARVEQEQREWEETMNELELLSPYHEDAITSTSQDLAASEVDEFVDSFINMDHEDKDDDREINKSPALADHEAETFSMVNDGYGDQVSMMIEGNDHHLETMSIDFSGEDHDHHFTVVPEMVPSVEEVSHGVDQGLHLVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNINANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKSLSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLASAWQVNNASSS
*ETMNGWLRLPMHESFNHDLAIRRFCPARVEQEQREWEETMNELEL*****************************************************************Q*************************************VEEVSHGVDQGLHLVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNINANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKSLSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLASAWQV******
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METMNGWLRLPMHESFNHDLAIRRFCPARVEQEQREWEETMNELELLSPYHEDAITSTSQDLAASEVDEFVDSFINMDHEDKDDDREINKSPALADHEAETFSMVNDGYGDQVSMMIEGNDHHLETMSIDFSGEDHDHHFTVVPEMVPSVEEVSHGVDQGLHLVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNINANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKSLSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLASAWQVNNASSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query540 2.2.26 [Sep-21-2011]
Q9C8Y3511 DELLA protein RGL1 OS=Ara yes no 0.662 0.700 0.387 3e-68
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.668 0.611 0.389 4e-68
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.675 0.667 0.369 3e-63
Q9LQT8533 DELLA protein GAI OS=Arab no no 0.666 0.675 0.365 8e-61
Q5BN22579 DELLA protein RGA2 OS=Bra N/A no 0.659 0.614 0.355 1e-59
Q84TQ7537 DELLA protein GAI OS=Goss N/A no 0.662 0.666 0.360 2e-59
Q9LF53523 DELLA protein RGL3 OS=Ara no no 0.670 0.692 0.354 3e-59
Q5BN23573 DELLA protein RGA1 OS=Bra N/A no 0.662 0.624 0.360 5e-59
Q9SLH3587 DELLA protein RGA OS=Arab no no 0.657 0.604 0.362 1e-58
Q7Y1B6588 DELLA protein GAI OS=Sola N/A no 0.661 0.607 0.360 4e-58
>sp|Q9C8Y3|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  259 bits (663), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 148/382 (38%), Positives = 226/382 (59%), Gaps = 24/382 (6%)

Query: 158 DQGLHLVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSL 217
           + G+ LVH LLACAEAV   + KLA +++  +   A+    ++++V+  FA GL  R+  
Sbjct: 147 ETGVRLVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRIYR 206

Query: 218 LQNINANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSL 277
           +   +          DV L +  + ++     Y++ PY+ F    AN+AI +     + +
Sbjct: 207 IYPRD----------DVALSSFSDTLQIH--FYESCPYLKFAHFTANQAILEVFATAEKV 254

Query: 278 HIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGI 337
           H+IDLG+   LQWP+LI++LA RP GPP  R+T +    +L++++     +   A+++G+
Sbjct: 255 HVIDLGLNHGLQWPALIQALALRPNGPPDFRLTGI--GYSLTDIQEVGWKLGQLASTIGV 312

Query: 338 NLEFSMISEPVTPSLLTRENLDLREG-EALFVNSIMHLHKYVKESRGSLKAILQAIKRLN 396
           N EF  I+     S L  E LD+R G E++ VNS+  LH+ +    GS+   L  IK + 
Sbjct: 313 NFEFKSIALN-NLSDLKPEMLDIRPGLESVAVNSVFELHRLLAHP-GSIDKFLSTIKSIR 370

Query: 397 PTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIR 456
           P ++TVVEQ+ANHNG  FL RF ESLHYYS++FDSLE    ++  +      L    +I 
Sbjct: 371 PDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPPSQDRVM----SELFLGRQIL 426

Query: 457 NIVAYEGSDRIERHERAHQWRRQLGRAGFQLV--GLKSLSQARMMLSVY-GCDGYTLACE 513
           N+VA EG DR+ERHE  +QWR + G  GF+ V  G  +  QA M+L++Y G DGY +   
Sbjct: 427 NLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEEN 486

Query: 514 KGCLLLGWKGRPIMLASAWQVN 535
           +GCLLLGW+ RP++  SAW++N
Sbjct: 487 EGCLLLGWQTRPLIATSAWRIN 508
Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description
>sp|Q9LQT8|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1 Back     alignment and function description
>sp|Q5BN22|RGA2_BRACM DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1 Back     alignment and function description
>sp|Q84TQ7|GAI_GOSHI DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q9LF53|RGL3_ARATH DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1 Back     alignment and function description
>sp|Q5BN23|RGA1_BRACM DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SLH3|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1 Back     alignment and function description
>sp|Q7Y1B6|GAI_SOLLC DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
255544600545 DELLA protein GAI1, putative [Ricinus co 0.981 0.972 0.742 0.0
224081403535 GRAS family transcription factor [Populu 0.970 0.979 0.705 0.0
147772469530 hypothetical protein VITISV_021044 [Viti 0.957 0.975 0.669 0.0
359494641616 PREDICTED: DELLA protein RGL1-like [Viti 0.957 0.839 0.669 0.0
356554755549 PREDICTED: DELLA protein RGL1-like [Glyc 0.979 0.963 0.620 0.0
358345180536 DELLA protein GAI [Medicago truncatula] 0.962 0.970 0.615 1e-178
356523560453 PREDICTED: LOW QUALITY PROTEIN: DELLA pr 0.835 0.995 0.558 1e-151
302764772541 GRAS family protein [Selaginella moellen 0.688 0.687 0.515 1e-103
302823137472 hypothetical protein SELMODRAFT_136689 [ 0.688 0.788 0.513 1e-102
224136051523 GRAS family transcription factor [Populu 0.688 0.711 0.473 3e-93
>gi|255544600|ref|XP_002513361.1| DELLA protein GAI1, putative [Ricinus communis] gi|223547269|gb|EEF48764.1| DELLA protein GAI1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/555 (74%), Positives = 462/555 (83%), Gaps = 25/555 (4%)

Query: 1   METMNGWLRLPMHESFNHDLAIRRFCPARVEQEQR--EWEET-MNELELLSPYHEDAITS 57
           ME MNGWL  PM+ESFNHDLAIRRFCPAR+EQEQ   EWEET MNE ELLSP   D  TS
Sbjct: 1   MEAMNGWLSFPMYESFNHDLAIRRFCPARMEQEQGSGEWEETVMNEFELLSP--SDDATS 58

Query: 58  TSQDLAASEVDEFVDSFINMDHEDK--DDDREINKSPALADH--------EAETFSMVND 107
           T  DLAASEVDE VDSFIN+DH+D   DD  +        DH          ETFSM+ND
Sbjct: 59  TPHDLAASEVDELVDSFINVDHQDNGHDDHHQSPDDLEYQDHFDHFQHDEMVETFSMLND 118

Query: 108 GYGDQVSMMIEGNDHHLETMSIDFSGEDHDHHFTVVPEMVPSVEEVSHGVDQGLHLVHLL 167
            + D V MMI G D  + T SI+ S         V P MVPS+EEVS+GVD+GLHLVHLL
Sbjct: 119 IFVD-VPMMIGGGDLEMSTGSIENSA-------AVGPGMVPSMEEVSYGVDRGLHLVHLL 170

Query: 168 LACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNINANGTF 227
           LACAEAVGCRDT+LA S+L+QIWAS  P+GDSLQRVSYCFALGL+SRLSLLQN  +NGTF
Sbjct: 171 LACAEAVGCRDTQLANSVLAQIWASVNPFGDSLQRVSYCFALGLRSRLSLLQNATSNGTF 230

Query: 228 TGGAMDVPLITREEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERT 287
              A++V LITREEKMEAFQL+YQTTPY++FGFMAANEAI +AA+GKD+LH+IDLGM+ T
Sbjct: 231 ANAAIEVSLITREEKMEAFQLLYQTTPYVAFGFMAANEAICEAARGKDALHVIDLGMDHT 290

Query: 288 LQWPSLIRSLASRPEGPPRIRITCLISN-QNLSELKASMKPVLHDATSLGINLEFSMISE 346
           LQWPS IR+LASRPEGPP++RIT LI++ QNL EL+ASMK +  DA+SLG++LEF+MI E
Sbjct: 291 LQWPSFIRTLASRPEGPPKVRITGLINDHQNLLELEASMKVLAEDASSLGVSLEFNMILE 350

Query: 347 PVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQD 406
            VTPSLLTRENL+LR+GEALF NSIMHLHK+VKESRGSLKAILQAIKRL+PTLLTVVEQD
Sbjct: 351 SVTPSLLTRENLNLRDGEALFFNSIMHLHKFVKESRGSLKAILQAIKRLSPTLLTVVEQD 410

Query: 407 ANHNGPFFLGRFLESLHYYSAIFDSLEAS-LPRNSPLRMNIERLHFAEEIRNIVAYEGSD 465
           ANHNGPFFLGRFLESLHYYSAIFDSLEAS LPRNS  RM IE+LHFAEEIRNIVAYEG D
Sbjct: 411 ANHNGPFFLGRFLESLHYYSAIFDSLEASLLPRNSRQRMKIEKLHFAEEIRNIVAYEGCD 470

Query: 466 RIERHERAHQWRRQLGRAGFQLVGLKSLSQARMMLSVYGCDGYTLACEKGCLLLGWKGRP 525
           RIERHERA QWRRQLGRAGFQ++GLK +SQARMMLSVYGCDGYTLA +KGCLLLGWKGRP
Sbjct: 471 RIERHERADQWRRQLGRAGFQVMGLKCMSQARMMLSVYGCDGYTLASDKGCLLLGWKGRP 530

Query: 526 IMLASAWQVNNASSS 540
           IMLASAW+ +N  SS
Sbjct: 531 IMLASAWKAHNVPSS 545

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224081403|ref|XP_002306397.1| GRAS family transcription factor [Populus trichocarpa] gi|222855846|gb|EEE93393.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147772469|emb|CAN65103.1| hypothetical protein VITISV_021044 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359494641|ref|XP_002263234.2| PREDICTED: DELLA protein RGL1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356554755|ref|XP_003545708.1| PREDICTED: DELLA protein RGL1-like [Glycine max] Back     alignment and taxonomy information
>gi|358345180|ref|XP_003636660.1| DELLA protein GAI [Medicago truncatula] gi|355502595|gb|AES83798.1| DELLA protein GAI [Medicago truncatula] Back     alignment and taxonomy information
>gi|356523560|ref|XP_003530405.1| PREDICTED: LOW QUALITY PROTEIN: DELLA protein RGL1-like [Glycine max] Back     alignment and taxonomy information
>gi|302764772|ref|XP_002965807.1| GRAS family protein [Selaginella moellendorffii] gi|300166621|gb|EFJ33227.1| GRAS family protein [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|302823137|ref|XP_002993223.1| hypothetical protein SELMODRAFT_136689 [Selaginella moellendorffii] gi|300138993|gb|EFJ05743.1| hypothetical protein SELMODRAFT_136689 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|224136051|ref|XP_002322227.1| GRAS family transcription factor [Populus trichocarpa] gi|222869223|gb|EEF06354.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.662 0.700 0.392 1.8e-64
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.677 0.669 0.378 5.5e-61
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.664 0.673 0.361 1.7e-57
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.672 0.555 0.379 4.6e-57
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.664 0.611 0.356 2e-56
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.668 0.690 0.363 2.5e-56
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.283 0.317 0.425 3e-54
TAIR|locus:2165685405 AT5G41920 "AT5G41920" [Arabido 0.664 0.886 0.379 1.3e-52
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.664 0.605 0.343 6.5e-51
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.666 0.734 0.338 1.3e-50
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 150/382 (39%), Positives = 227/382 (59%)

Query:   158 DQGLHLVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSL 217
             + G+ LVH LLACAEAV   + KLA +++  +   A+    ++++V+  FA GL  R+  
Sbjct:   147 ETGVRLVHALLACAEAVQQNNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRIYR 206

Query:   218 LQNINANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSL 277
             +   +          DV L +  + ++     Y++ PY+ F    AN+AI +     + +
Sbjct:   207 IYPRD----------DVALSSFSDTLQIH--FYESCPYLKFAHFTANQAILEVFATAEKV 254

Query:   278 HIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGI 337
             H+IDLG+   LQWP+LI++LA RP GPP  R+T +    +L++++     +   A+++G+
Sbjct:   255 HVIDLGLNHGLQWPALIQALALRPNGPPDFRLTGI--GYSLTDIQEVGWKLGQLASTIGV 312

Query:   338 NLEFSMISEPVTPSLLTRENLDLREG-EALFVNSIMHLHKYVKESRGSLKAILQAIKRLN 396
             N EF  I+     S L  E LD+R G E++ VNS+  LH+ +    GS+   L  IK + 
Sbjct:   313 NFEFKSIALN-NLSDLKPEMLDIRPGLESVAVNSVFELHRLLAHP-GSIDKFLSTIKSIR 370

Query:   397 PTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIR 456
             P ++TVVEQ+ANHNG  FL RF ESLHYYS++FDSLE   P +    M+   L    +I 
Sbjct:   371 PDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEG--PPSQDRVMS--ELFLGRQIL 426

Query:   457 NIVAYEGSDRIERHERAHQWRRQLGRAGFQLV--GLKSLSQARMMLSVY-GCDGYTLACE 513
             N+VA EG DR+ERHE  +QWR + G  GF+ V  G  +  QA M+L++Y G DGY +   
Sbjct:   427 NLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEEN 486

Query:   514 KGCLLLGWKGRPIMLASAWQVN 535
             +GCLLLGW+ RP++  SAW++N
Sbjct:   487 EGCLLLGWQTRPLIATSAWRIN 508
GO:0005634 "nucleus" evidence=ISM;IDA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS
GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IMP
GO:0009651 "response to salt stress" evidence=IGI
GO:0009723 "response to ethylene stimulus" evidence=IGI;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IGI;RCA
GO:0042538 "hyperosmotic salinity response" evidence=IGI;RCA
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IGI
GO:0009863 "salicylic acid mediated signaling pathway" evidence=IGI;RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI;RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010325 "raffinose family oligosaccharide biosynthetic process" evidence=RCA
GO:0048444 "floral organ morphogenesis" evidence=RCA
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165685 AT5G41920 "AT5G41920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-124
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  368 bits (947), Expect = e-124
 Identities = 168/378 (44%), Positives = 239/378 (63%), Gaps = 15/378 (3%)

Query: 163 LVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNIN 222
           LVHLLLACAEAV   D  LA ++L+++   A+P GD +QR++  F   L +RL+      
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLA------ 54

Query: 223 ANGTFTGGAMDVPLITRE---EKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHI 279
            +G+    A+     T     E + A++L Y+ +PY+ FG   AN+AI +A +G++ +HI
Sbjct: 55  RSGSSIYSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHI 114

Query: 280 IDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLS--ELKASMKPVLHDATSLGI 337
           ID  + + LQWPSLI++LASRP GPP +RIT + S Q  S  EL+ +   +   A SLG+
Sbjct: 115 IDFDIGQGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGV 174

Query: 338 NLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLK-AILQAIKRLN 396
             EF+          L  E LD+R GEAL VN +  LH+ + ES        L+ +K LN
Sbjct: 175 PFEFN-PLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRLVKSLN 233

Query: 397 PTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIR 456
           P ++T+VEQ+ANHN   FL RF+E+LHYYSA+FDSLEA+LPR+S  R  +ER     EI 
Sbjct: 234 PKVVTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIV 293

Query: 457 NIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLKS--LSQARMMLSVYGCDGYTLACEK 514
           N+VA EG++R+ERHE   +WR ++ RAGF+ V L    + QA+++L +Y  DGY +  + 
Sbjct: 294 NVVACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDN 353

Query: 515 GCLLLGWKGRPIMLASAW 532
           G L+LGWKGRP++ ASAW
Sbjct: 354 GSLVLGWKGRPLVAASAW 371

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 540
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.46
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.94
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.65
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 94.58
PRK06202232 hypothetical protein; Provisional 94.26
PLN02233261 ubiquinone biosynthesis methyltransferase 92.5
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 92.28
PLN02336475 phosphoethanolamine N-methyltransferase 90.92
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 90.55
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 90.25
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 90.21
PLN02336 475 phosphoethanolamine N-methyltransferase 89.6
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 89.46
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 89.45
PRK08317241 hypothetical protein; Provisional 89.09
PLN02585315 magnesium protoporphyrin IX methyltransferase 88.42
PRK12335287 tellurite resistance protein TehB; Provisional 86.7
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 86.14
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 86.12
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 86.08
PRK11207197 tellurite resistance protein TehB; Provisional 85.35
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 85.12
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 85.01
TIGR03438301 probable methyltransferase. This model represents 83.2
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 82.3
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 81.32
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-107  Score=857.27  Aligned_cols=366  Identities=46%  Similarity=0.768  Sum_probs=338.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHhhhcccccCCCCcccccCCCC-CCCCCHHH
Q 009215          163 LVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNINANGTFTGGAMD-VPLITREE  241 (540)
Q Consensus       163 Lv~LLl~CAeAV~~gd~~~A~~lL~~L~~~aSp~Gd~~QRlA~yFaeAL~~Rl~~~~~~~~~~~~~~~~~~-~~~~~~~~  241 (540)
                      |++||++||+||+.||...|+.+|++|++++||+|||+||||+||++||.+||.+.    +++.|...... .+.....+
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~----~~~~~~~~~~~~~~~~~~~~   76 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGS----GPGLYSALPPSSPSPSESSE   76 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhcc----CcccccCCCCccccccchHH
Confidence            68999999999999999999999999999999999999999999999999999963    44555211111 11112567


Q ss_pred             HHHHHHHHHhcCCcchhhhHhhhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC--Chh
Q 009215          242 KMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ--NLS  319 (540)
Q Consensus       242 ~~~A~~~f~e~sP~~kfahftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~--~~~  319 (540)
                      ++.||++||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++|.  +..
T Consensus        77 ~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~  156 (374)
T PF03514_consen   77 QLAAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSAD  156 (374)
T ss_pred             HHHHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHH
Confidence            888999999999999999999999999999999999999999999999999999999999999999999999976  455


Q ss_pred             HHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcccccCccCCceEEEEeccccccccccc---cchHHHHHHHHHhcC
Q 009215          320 ELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKES---RGSLKAILQAIKRLN  396 (540)
Q Consensus       320 ~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es---~~~r~~~L~~Ir~L~  396 (540)
                      .+++++++|.++|+++||+|+|+.+... .+++++.++|++++||+|||||+++||||++++   .++++.||+.||+|+
T Consensus       157 ~l~~~g~rL~~fA~~lgv~fef~~v~~~-~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~  235 (374)
T PF03514_consen  157 ELQETGRRLAEFARSLGVPFEFHPVVVE-SLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLN  235 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccEEEEecccC-chhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcC
Confidence            7899999999999999999999996422 456788899999999999999999999999765   458999999999999


Q ss_pred             CcEEEEEeecCCCCCCchhHHHHHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHH
Q 009215          397 PTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQW  476 (540)
Q Consensus       397 PkvvvlvEqea~hnsp~F~~RF~EAL~yYsAlFDSLea~lp~~s~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~W  476 (540)
                      |+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||||.+|+||||++++|
T Consensus       236 P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W  315 (374)
T PF03514_consen  236 PKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQW  315 (374)
T ss_pred             CCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCeeecCCc--HHHHHHHHhccCCCCcEEEeeCCEEEEEECCceeEEEeece
Q 009215          477 RRQLGRAGFQLVGLKS--LSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLASAWQ  533 (540)
Q Consensus       477 r~rm~rAGF~~vpls~--~~qA~~ll~~~~~~gy~v~~d~g~LlLgWk~rpL~aaSAWr  533 (540)
                      +.||++|||+++|+|+  +.|||+|++.|+++||+|++++|||+||||++||+++||||
T Consensus       316 ~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  316 RRRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            9999999999999999  89999999999888999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.4 bits (148), Expect = 5e-10
 Identities = 59/401 (14%), Positives = 115/401 (28%), Gaps = 100/401 (24%)

Query: 122 HHL--ETMSIDFSGED----------HDHHFTVVPEMVPSV---EEVSHGVDQG--LHLV 164
           HH+  ET    +  +D           +     V +M  S+   EE+ H +     +   
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 165 HLLLACAEAVGCRDTKLAVSMLSQI---WASATPW-----GDSLQRVSYCFALGLKSRLS 216
             L     +      +  V  + +I   +   +P        S+    Y        +  
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMY------IEQRD 117

Query: 217 LLQNINANGTFTGGAMDVPLITREEKMEA-----FQLVYQTTPYIS-FGFMA-------A 263
            L N N    F     +V    R +          +L  +    +   G +        A
Sbjct: 118 RLYNDNQ--VFA--KYNVS---RLQPYLKLRQALLEL--RPAKNVLIDG-VLGSGKTWVA 167

Query: 264 NEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRIT-CLISNQNLSELK 322
            +            + +   M+  + W +L     + PE    +        + N +   
Sbjct: 168 LDVCLS--------YKVQCKMDFKIFWLNLKNC--NSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 323 ASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENL-DLREGEALFVNSIMHLHKYVKES 381
                +     S+   L   + S+P    LL   N+ + +   A  ++      K +  +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-----KILLTT 272

Query: 382 RGSLKAILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPR--- 438
           R   K +   +     T +++      H+         E         D     LPR   
Sbjct: 273 RF--KQVTDFLSAATTTHISLDH----HSMTLTPD---EVKSLLLKYLDCRPQDLPREVL 323

Query: 439 -NSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRR 478
             +P R++I     AE IR     +G    +       W+ 
Sbjct: 324 TTNPRRLSI----IAESIR-----DGLATWDN------WKH 349
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query540
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.65
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.52
3dh0_A219 SAM dependent methyltransferase; cystal structure, 96.12
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 96.1
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 95.99
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.91
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 95.27
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 95.0
3dp7_A363 SAM-dependent methyltransferase; structural genomi 94.92
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 94.9
2r3s_A335 Uncharacterized protein; methyltransferase domain, 94.84
3f4k_A257 Putative methyltransferase; structural genomics, P 94.77
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 94.74
1xxl_A239 YCGJ protein; structural genomics, protein structu 94.23
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 94.18
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 94.02
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 93.7
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.59
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 93.42
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 93.34
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 93.0
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 92.88
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 92.85
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 92.48
3hnr_A220 Probable methyltransferase BT9727_4108; structural 92.46
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 92.41
3ocj_A305 Putative exported protein; structural genomics, PS 91.98
3m70_A286 Tellurite resistance protein TEHB homolog; structu 91.74
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 91.73
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 91.65
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 91.43
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 91.37
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 91.33
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 90.22
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 90.16
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 89.65
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 89.61
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 89.31
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 89.15
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 88.99
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 88.86
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 87.91
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 87.67
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 87.26
3ege_A261 Putative methyltransferase from antibiotic biosyn 87.1
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 86.5
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 86.32
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 85.91
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 85.47
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 85.19
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 85.17
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 84.82
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 84.64
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 84.46
3lcc_A235 Putative methyl chloride transferase; halide methy 84.43
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 84.32
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 83.45
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 83.27
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 83.09
1wzn_A252 SAM-dependent methyltransferase; structural genomi 82.97
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 82.95
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 82.76
3d2l_A243 SAM-dependent methyltransferase; ZP_00538691.1, st 82.21
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 81.86
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 81.69
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 81.53
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 80.93
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 80.59
2p8j_A209 S-adenosylmethionine-dependent methyltransferase; 80.58
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.65  E-value=0.003  Score=62.38  Aligned_cols=107  Identities=15%  Similarity=0.152  Sum_probs=66.2

Q ss_pred             eEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCccc
Q 009215          277 LHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRE  356 (540)
Q Consensus       277 VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~  356 (540)
                      -+|+|+|.|.|    .+...|+.+- ++|..+||||+.+..      .++..-++++..+.....+++...+.       
T Consensus        72 ~~vLDlGcGtG----~~~~~la~~~-~~~~~~v~gvD~s~~------ml~~A~~~~~~~~~~~~v~~~~~D~~-------  133 (261)
T 4gek_A           72 TQVYDLGCSLG----AATLSVRRNI-HHDNCKIIAIDNSPA------MIERCRRHIDAYKAPTPVDVIEGDIR-------  133 (261)
T ss_dssp             CEEEEETCTTT----HHHHHHHHTC-CSSSCEEEEEESCHH------HHHHHHHHHHTSCCSSCEEEEESCTT-------
T ss_pred             CEEEEEeCCCC----HHHHHHHHhc-CCCCCEEEEEECCHH------HHHHHHHHHHhhccCceEEEeecccc-------
Confidence            47999999999    4555666542 346789999998642      23444456667775545555543221       


Q ss_pred             ccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEE-Eeec
Q 009215          357 NLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTV-VEQD  406 (540)
Q Consensus       357 ~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvvl-vEqe  406 (540)
                      ++...+-.+  |-+.+.||++...   .+..+|+.| |.|+|.-..+ +|.-
T Consensus       134 ~~~~~~~d~--v~~~~~l~~~~~~---~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          134 DIAIENASM--VVLNFTLQFLEPS---ERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             TCCCCSEEE--EEEESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ccccccccc--ceeeeeeeecCch---hHhHHHHHHHHHcCCCcEEEEEecc
Confidence            122222233  4455678888643   467788876 7799987664 4543
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query540
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.71
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 97.23
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.95
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 95.62
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 95.44
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.38
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 94.48
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 94.02
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 93.82
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 93.68
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 93.56
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 93.17
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 92.95
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 92.82
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 92.46
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 91.9
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 91.6
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 90.31
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 90.04
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 87.0
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 86.42
d2fyta1311 Protein arginine N-methyltransferase 3, PRMT3 {Hum 84.09
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 83.86
d1oria_316 Protein arginine N-methyltransferase 1, PRMT1 {Rat 82.67
d1g6q1_328 Arginine methyltransferase, HMT1 {Baker's yeast (S 82.65
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=0.0017  Score=59.55  Aligned_cols=106  Identities=18%  Similarity=0.217  Sum_probs=68.4

Q ss_pred             CeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCc
Q 009215          275 DSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLT  354 (540)
Q Consensus       275 ~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~  354 (540)
                      ..-||+|+|.|.|    .+...|+.. -..|..+||||+.+..      .++.--+.++..+....+++.....      
T Consensus        39 ~~~~vLDlGCGtG----~~~~~l~~~-~~~~~~~v~giD~S~~------ml~~A~~~~~~~~~~~~~~~~~~d~------  101 (225)
T d1im8a_          39 ADSNVYDLGCSRG----AATLSARRN-INQPNVKIIGIDNSQP------MVERCRQHIAAYHSEIPVEILCNDI------  101 (225)
T ss_dssp             TTCEEEEESCTTC----HHHHHHHHT-CCCSSCEEEEECSCHH------HHHHHHHHHHTSCCSSCEEEECSCT------
T ss_pred             CCCEEEEeccchh----hHHHHHHHh-hcCCCCceEEeCCCHH------HHHHHHHHhHhhcccchhhhccchh------
Confidence            3458999999999    444555543 2247889999998753      2333344566777666676664321      


Q ss_pred             ccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 009215          355 RENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVV  403 (540)
Q Consensus       355 ~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvvlv  403 (540)
                         .....+..-+|.|.+.||++..+   ....+|+.| |.|+|.-.++.
T Consensus       102 ---~~~~~~~~d~i~~~~~l~~~~~~---d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         102 ---RHVEIKNASMVILNFTLQFLPPE---DRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             ---TTCCCCSEEEEEEESCGGGSCGG---GHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---hccccccceeeEEeeeccccChh---hHHHHHHHHHHhCCCCceeec
Confidence               12223445567778888988543   455777776 88999986655
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure